BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4090
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%)
Query: 12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N
Sbjct: 14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73
Query: 72 QTKFYALQILEQVIKTRWKALPREQCD 98
TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 74 NTKYYGLQILENVIKTRWKILPRNQCE 100
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%)
Query: 12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N
Sbjct: 16 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 75
Query: 72 QTKFYALQILEQVIKTRWKALPREQCD 98
TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 76 NTKYYGLQILENVIKTRWKILPRNQCE 102
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 4 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 63
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 64 KFIALSILDKLITRKWKLLPNDH 86
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 6 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 65
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 66 KFIALSILDKLITRKWKLLPNDH 88
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 48/72 (66%)
Query: 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVI 85
LD V Y G G +QKAAQ L KE PDAW VD IL ++ +QTKF ALQ+L+ VI
Sbjct: 17 LDATVRAFYEGRGEQQKAAQAALNQFKEDPDAWLMVDEILSRATYEQTKFLALQVLDNVI 76
Query: 86 KTRWKALPREQC 97
TRWK LPREQC
Sbjct: 77 MTRWKVLPREQC 88
>pdb|1ZSQ|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3-Phosphate
pdb|1ZVR|A Chain A, Crystal Structure Of Mtmr2 In Complex With
Phosphatidylinositol 3,5-Bisphosphate
Length = 528
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 10 QFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY 67
QF +FN+ IT+LD++ C++ EQ+ +E L K W+ +++ LE
Sbjct: 424 QFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLP--KRTVSLWSYINSQLED 481
Query: 68 SSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 482 FTNPLYGSYSNHVLYPVASMR 502
>pdb|1LW3|A Chain A, Crystal Structure Of Myotubularin-Related Protein 2
Complexed With Phosphate
pdb|1M7R|A Chain A, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
pdb|1M7R|B Chain B, Crystal Structure Of Myotubularin-Related Protein-2
(Mtmr2) Complexed With Phosphate
Length = 657
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 10 QFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY 67
QF +FN+ IT+LD++ C++ EQ+ +E L K W+ +++ LE
Sbjct: 496 QFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLP--KRTVSLWSYINSQLED 553
Query: 68 SSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 554 FTNPLYGSYSNHVLYPVASMR 574
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 31/77 (40%)
Query: 19 QKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYAL 78
+ +DI L+ V Y Q E LT + P AW +++ +Q+ +F+
Sbjct: 2 EPIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGA 61
Query: 79 QILEQVIKTRWKALPRE 95
L + W +P E
Sbjct: 62 ITLHSKLMKHWHEVPPE 78
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 73 TKFYALQILEQVIKTRWKALPR 94
+ + LQILE V+K RW + R
Sbjct: 63 VRHFGLQILEHVVKFRWNGMSR 84
>pdb|1QWK|A Chain A, Structural Genomics Of Caenorhabditis Elegans:
Hypothetical 35.2 Kda Protein (Aldose Reductase Family
Member)
Length = 317
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR-VDTILEYSSNQQTKFYALQILEQV 84
L N VE G+G Q + EV+TA+K A R +DT Y + + ++LE+
Sbjct: 10 LSNGVEMPVIGLGTWQSSPAEVITAVKTAVKAGYRLIDTASVYQNEEAIGTAIKELLEEG 69
Query: 85 IKTR 88
+ R
Sbjct: 70 VVKR 73
>pdb|3GYB|A Chain A, Crystal Structure Of A Laci-Family Transcriptional
Regulatory Protein From Corynebacterium Glutamicum
pdb|3GYB|B Chain B, Crystal Structure Of A Laci-Family Transcriptional
Regulatory Protein From Corynebacterium Glutamicum
Length = 280
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 34 YTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYAL 78
Y G VE E L LKEHP+ V I +SSN T AL
Sbjct: 154 YLGPAVEHAGYTETLALLKEHPE----VTAI--FSSNDITAIGAL 192
>pdb|4GIC|A Chain A, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
pdb|4GIC|B Chain B, Crystal Structure Of A Putative Histidinol Dehydrogenase
(Target Psi- 014034) From Methylococcus Capsulatus
Length = 423
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 77 ALQILEQVIKTRWKALPREQCD-VKEEKEREQNWFQR 112
AL++ V++ W+ALP EQ ++E ER + + +R
Sbjct: 71 ALELPRDVLEAAWQALPAEQAKALREAAERIRAYAER 107
>pdb|2J9I|A Chain A, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|B Chain B, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|C Chain C, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|D Chain D, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|E Chain E, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|F Chain F, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|G Chain G, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|H Chain H, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|I Chain I, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|J Chain J, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|K Chain K, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens.
pdb|2J9I|L Chain L, Lengsin Is A Survivor Of An Ancient Family Of Class I
Glutamine Synthetases In Eukaryotes That Has Undergone
Evolutionary Re-Engineering For A Tissue-Specific Role
In The Vertebrate Eye Lens
Length = 421
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 43 AAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTR 88
+A+ VLT L EH A+ R + + + ++K Q E+VI R
Sbjct: 1 SAEHVLTMLNEHAAAFVRFEAT-DAAGASRSKSIPAQFFEKVIHAR 45
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 7 PNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTAL-KEHPDAWTRVDTIL 65
P+E F L Q+ D V Y G + K E LTAL K+HPD VD ++
Sbjct: 69 PDEWFSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVI 128
>pdb|3H7V|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From
Thermosynechococcus Elongatus Bp-1 Complexed With Mg In
The Active Site
Length = 330
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVD 62
LL+ C G GV++ + +LT L + W R+D
Sbjct: 284 LLETWQPCHALGFGVDRWRSAPLLTTLTAYERLWERLD 321
>pdb|2OZT|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase From
Thermosynechococcus Elongatus Bp-1
Length = 332
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVD 62
LL+ C G GV++ + +LT L + W R+D
Sbjct: 286 LLETWQPCHALGFGVDRWRSAPLLTTLTAYERLWERLD 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,251,030
Number of Sequences: 62578
Number of extensions: 110245
Number of successful extensions: 348
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 29
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)