BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4090
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14980|XPO1_HUMAN Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1
Length = 1071
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%)
Query: 12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N
Sbjct: 14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73
Query: 72 QTKFYALQILEQVIKTRWKALPREQCD 98
TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 74 NTKYYGLQILENVIKTRWKILPRNQCE 100
>sp|Q80U96|XPO1_RAT Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1
Length = 1071
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%)
Query: 12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N
Sbjct: 14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73
Query: 72 QTKFYALQILEQVIKTRWKALPREQCD 98
TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 74 NTKYYGLQILENVIKTRWKILPRNQCE 100
>sp|Q6P5F9|XPO1_MOUSE Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1
Length = 1071
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 73/87 (83%)
Query: 12 KKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
++LLDF+QKLDI LLDN+V C+Y G G +Q+ AQEVLT LKEHPDAWTRVDTILE+S N
Sbjct: 14 RQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNM 73
Query: 72 QTKFYALQILEQVIKTRWKALPREQCD 98
TK+Y LQILE VIKTRWK LPR QC+
Sbjct: 74 NTKYYGLQILENVIKTRWKILPRNQCE 100
>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1
Length = 1063
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 1 MATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTR 60
MAT++ +E KLLDF+QKLDI LLD IVE +YT G + + AQ +LT LKEHP+AWTR
Sbjct: 1 MATMLTSDEA-GKLLDFSQKLDINLLDKIVEVVYTAQGEQLRLAQSILTTLKEHPEAWTR 59
Query: 61 VDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCD 98
VD+ILEYS NQ+TKFYALQILE+VIKTRWK LPR QC+
Sbjct: 60 VDSILEYSQNQRTKFYALQILEEVIKTRWKVLPRNQCE 97
>sp|Q54EV7|XPO1_DICDI Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2
Length = 1057
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQ--KAAQEVLTALKEHPDAWTRVDTILEYSSNQ 71
+L+FN+ LDI LLD IV +Y + + KAAQ VL +EHPDAW++VDTILE S
Sbjct: 4 ILNFNEPLDINLLDQIVSVLYNPLSNKNDIKAAQMVLGKFQEHPDAWSKVDTILETSKIV 63
Query: 72 QTKFYALQILEQVIKTRWKALPREQCD 98
QTKF AL I++ +IK RWK+LPREQC+
Sbjct: 64 QTKFIALVIMDSLIKYRWKSLPREQCE 90
>sp|P30822|XPO1_YEAST Exportin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CRM1 PE=1 SV=1
Length = 1084
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+LDF+ LDI LLD +V Y G GV+QK AQE+LT +++PDAW + D IL++S+N Q+
Sbjct: 4 ILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQS 63
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
KF AL IL+++I +WK LP +
Sbjct: 64 KFIALSILDKLITRKWKLLPNDH 86
>sp|P14068|XPO1_SCHPO Exportin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=xpo1 PE=1 SV=3
Length = 1078
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 62/83 (74%)
Query: 14 LLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
+L F+++LD+ LLD +V+ Y G+G EQ+ AQ+VLT + HPDAW++ +ILE S QT
Sbjct: 4 ILAFDRELDVALLDRVVQTFYQGVGAEQQQAQQVLTQFQAHPDAWSQAYSILEKSEYPQT 63
Query: 74 KFYALQILEQVIKTRWKALPREQ 96
K+ AL +L+++I TRWK LP+EQ
Sbjct: 64 KYIALSVLDKLITTRWKMLPKEQ 86
>sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1
Length = 1135
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 40 EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW 89
+++ +Q L +K +A + I+ S+N K +AL I+E ++K RW
Sbjct: 28 QREESQVFLEEIKTRANAHSYAIAIITTSNNDILKHFALHIIETLVKNRW 77
>sp|Q5ZIV1|MTMR2_CHICK Myotubularin-related protein 2 OS=Gallus gallus GN=MTMR2 PE=2 SV=1
Length = 571
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 10 QFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY 67
QF +FN+ IT+LD++ C++ EQ+ +E L K+ W+ +++ LE
Sbjct: 421 QFPTAFEFNEYFLITILDHLYSCLFGTFLCSSEQQRVKESLP--KKTVSLWSYINSQLED 478
Query: 68 SSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 479 FTNPLYVSYSNHVLYPVASMR 499
>sp|Q9Z2D1|MTMR2_MOUSE Myotubularin-related protein 2 OS=Mus musculus GN=Mtmr2 PE=1 SV=3
Length = 643
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 10 QFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY 67
QF +FN+ IT+LD++ C++ EQ+ +E L K+ W+ +++ LE
Sbjct: 493 QFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLP--KKTVSLWSYINSQLED 550
Query: 68 SSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 551 FTNPLYGSYSNHVLYPVASMR 571
>sp|Q54CB2|XPO6_DICDI Exportin-6 OS=Dictyostelium discoideum GN=xpo6 PE=3 SV=1
Length = 1047
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 26 LDNIVECMY-TGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQV 84
L N++E Y T ++K +L K D++ V L +S NQ +++L ++E
Sbjct: 13 LQNVLEQFYLTTDNPKRKEIDTILNNYKAQSDSYEHVQYYLVHSDNQYVIWFSLSVIEDK 72
Query: 85 IKTRWKAL 92
+ W ++
Sbjct: 73 VNKAWNSI 80
>sp|Q5REB9|MTMR2_PONAB Myotubularin-related protein 2 OS=Pongo abelii GN=MTMR2 PE=2 SV=1
Length = 643
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 10 QFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY 67
QF +FN+ IT+LD++ C++ EQ+ +E L K W+ +++ LE
Sbjct: 493 QFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLP--KRTVSLWSYINSQLED 550
Query: 68 SSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 551 FTNPLYGSYSNHVLYPVASMR 571
>sp|Q13614|MTMR2_HUMAN Myotubularin-related protein 2 OS=Homo sapiens GN=MTMR2 PE=1 SV=4
Length = 643
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 10 QFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY 67
QF +FN+ IT+LD++ C++ EQ+ +E L K W+ +++ LE
Sbjct: 493 QFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLP--KRTVSLWSYINSQLED 550
Query: 68 SSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 551 FTNPLYGSYSNHVLYPVASMR 571
>sp|A9KSC7|GSA2_CLOPH Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=hemL2 PE=3 SV=1
Length = 426
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 35 TGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFY 76
+G V A L LKEHP+ +T+++ + EY N+ + +
Sbjct: 299 SGNPVAMAAGMAQLKYLKEHPEVYTKINELGEYFRNKVNELF 340
>sp|P38147|CHK1_YEAST Serine/threonine-protein kinase CHK1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHK1 PE=1 SV=1
Length = 527
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 35 TGMGVEQKAAQEV---LTALKEHPD---AWTRVDTILEYSSNQQTKFYALQILEQVIKTR 88
TGM E K Q + + AL+ H D V L+++ N+ TKFY LQ ++ ++
Sbjct: 373 TGMTQEAKWTQFISYDIAALQFHSDENDCNELVKRHLQFNPNKLTKFYTLQPMDVLLPIL 432
Query: 89 WKALPREQCDVKEE 102
KAL Q VK +
Sbjct: 433 EKALNLSQIRVKPD 446
>sp|A6QLT2|MTMR2_BOVIN Myotubularin-related protein 2 OS=Bos taurus GN=MTMR2 PE=2 SV=1
Length = 643
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 10 QFKKLLDFNQKLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEY 67
QF +FN+ IT+LD++ C++ EQ+ +E L + W+ +++ LE
Sbjct: 493 QFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLP--RRTVSLWSYINSQLED 550
Query: 68 SSNQQTKFYALQILEQVIKTR 88
+N Y+ +L V R
Sbjct: 551 FTNPLYGSYSNHVLYPVASMR 571
>sp|Q8QHJ8|XPO6_DANRE Exportin-6 OS=Danio rerio GN=xpo6 PE=2 SV=1
Length = 1128
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 41 QKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPRE 95
++ +E+L + P +W L S N+ Y+L + E ++ W + E
Sbjct: 28 KREIEELLNSFAGQPGSWRHWLYFLSNSRNEYVMMYSLTVFENLVNKMWVGVASE 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,586,743
Number of Sequences: 539616
Number of extensions: 1388170
Number of successful extensions: 4719
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 4703
Number of HSP's gapped (non-prelim): 51
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)