Query psy4090
Match_columns 112
No_of_seqs 108 out of 275
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:37:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 99.9 6E-24 2.1E-28 188.5 6.3 104 2-106 7-110 (1073)
2 4hat_C Exportin-1; heat repeat 99.9 8.8E-22 3E-26 173.6 10.7 97 10-106 2-98 (1023)
3 3m1i_C Exportin-1; heat repeat 99.8 3.5E-19 1.2E-23 154.8 10.8 97 10-106 2-98 (1049)
4 2x1g_F Cadmus; transport prote 99.6 1.4E-16 4.6E-21 136.5 5.9 87 20-106 3-89 (971)
5 2x19_B Importin-13; nuclear tr 99.6 1.7E-15 5.8E-20 129.0 11.1 86 21-106 21-107 (963)
6 3a6p_A Exportin-5; exportin-5, 99.4 5.4E-13 1.9E-17 118.7 10.5 84 23-106 10-96 (1204)
7 3ibv_A Exportin-T; karyopherin 99.4 9E-13 3.1E-17 115.7 9.5 83 20-106 2-92 (980)
8 4fdd_A Transportin-1; heat rep 98.9 3.5E-09 1.2E-13 89.5 9.7 85 22-106 11-97 (852)
9 1wa5_C Importin alpha RE-expor 98.8 1.6E-08 5.5E-13 87.1 9.5 83 22-106 3-92 (960)
10 1ibr_B P95, importin beta-1 su 98.7 3.6E-08 1.2E-12 75.9 7.8 81 26-106 3-97 (462)
11 2bpt_A Importin beta-1 subunit 98.7 3.2E-08 1.1E-12 82.0 7.3 86 21-106 1-102 (861)
12 1qgr_A Protein (importin beta 98.1 9.4E-06 3.2E-10 67.3 7.7 81 26-106 3-97 (876)
13 3ldz_A STAM-1, signal transduc 88.6 3.2 0.00011 28.2 8.2 52 21-87 21-72 (140)
14 1elk_A Target of MYB1; superhe 83.6 5.2 0.00018 27.7 7.3 41 47-87 40-84 (157)
15 1mhq_A ADP-ribosylation factor 83.1 4.7 0.00016 27.8 6.8 52 21-87 17-68 (148)
16 3g2s_A C-terminal fragment of 82.3 6.1 0.00021 27.3 7.1 52 21-87 27-78 (149)
17 3zyq_A Hepatocyte growth facto 81.9 6.4 0.00022 28.8 7.5 20 68-87 56-75 (226)
18 1juq_A ADP-ribosylation factor 81.3 6.4 0.00022 27.7 7.1 21 67-87 60-80 (171)
19 1x5b_A Signal transducing adap 78.6 7.3 0.00025 27.2 6.6 21 67-87 62-82 (163)
20 3mab_A Uncharacterized protein 78.5 3.9 0.00013 26.4 4.7 31 73-106 53-84 (93)
21 3ul1_B Importin subunit alpha- 77.3 25 0.00085 27.8 10.1 70 25-99 58-138 (510)
22 1dvp_A HRS, hepatocyte growth 77.2 11 0.00039 27.1 7.5 21 67-87 52-72 (220)
23 3rru_A TOM1L1 protein; structu 76.9 11 0.00039 26.0 7.1 20 68-87 65-84 (152)
24 3ltj_A Alpharep-4; protein eng 76.9 14 0.00048 24.7 8.5 56 26-83 47-102 (201)
25 1u6g_C TIP120 protein, CAND1; 70.8 34 0.0012 29.8 10.0 78 24-106 6-93 (1230)
26 3bqs_A Uncharacterized protein 70.2 5.5 0.00019 25.6 3.8 30 74-106 54-84 (93)
27 3ltm_A Alpha-REP4; protein eng 65.9 27 0.00094 23.4 7.5 57 25-83 51-107 (211)
28 3grl_A General vesicular trans 54.5 45 0.0015 28.5 7.5 44 44-88 110-153 (651)
29 1eyh_A Epsin; superhelix of he 53.9 43 0.0015 22.9 6.2 53 22-88 22-74 (144)
30 3dad_A FH1/FH2 domain-containi 52.7 82 0.0028 24.7 9.2 64 41-108 219-305 (339)
31 1te4_A Conserved protein MTH18 51.9 42 0.0014 21.1 5.9 57 26-84 44-100 (131)
32 1inz_A EPS15-interacting porte 51.5 51 0.0018 22.6 6.4 52 23-88 41-92 (148)
33 3ltm_A Alpha-REP4; protein eng 50.8 53 0.0018 21.9 7.8 58 25-84 113-170 (211)
34 1oyz_A Hypothetical protein YI 48.2 52 0.0018 23.1 6.2 63 23-85 53-119 (280)
35 3tpo_A Importin subunit alpha- 46.1 1.1E+02 0.0036 24.1 9.9 63 25-87 77-150 (529)
36 1oyz_A Hypothetical protein YI 44.6 78 0.0027 22.1 8.4 57 26-84 25-81 (280)
37 3ltj_A Alpharep-4; protein eng 44.0 67 0.0023 21.2 7.5 56 26-83 78-133 (201)
38 1wa5_C Importin alpha RE-expor 42.7 94 0.0032 26.4 7.8 77 27-104 88-171 (960)
39 2jdq_A Importin alpha-1 subuni 42.7 1E+02 0.0034 22.8 7.5 62 26-87 22-95 (450)
40 1jdh_A Beta-catenin; beta-cate 39.8 1.2E+02 0.0041 22.9 7.7 58 26-84 462-528 (529)
41 4b8j_A Importin subunit alpha- 38.6 1.3E+02 0.0045 23.1 10.3 65 23-87 73-148 (528)
42 1te4_A Conserved protein MTH18 37.6 60 0.002 20.3 4.7 58 23-82 72-129 (131)
43 2qk2_A LP04448P; mini spindles 37.1 1E+02 0.0034 21.2 8.5 65 23-87 97-163 (242)
44 3fgh_A Transcription factor A, 35.9 17 0.00057 21.0 1.5 20 81-100 29-48 (67)
45 3b2a_A TON_1937, putative unch 35.1 1.5E+02 0.0051 22.6 9.8 89 11-101 99-199 (265)
46 1hry_A Human SRY; DNA, DNA-bin 34.8 17 0.0006 21.3 1.5 19 82-100 36-54 (76)
47 1gt0_D Transcription factor SO 34.5 21 0.0007 21.3 1.8 20 81-100 33-52 (80)
48 1wiz_A DNA-binding protein SAT 34.0 21 0.00073 23.4 2.0 42 47-103 51-93 (101)
49 1wa5_B Importin alpha subunit; 33.9 1.6E+02 0.0056 22.7 7.6 63 25-87 88-161 (530)
50 1wz6_A HMG-box transcription f 33.2 19 0.00065 21.6 1.5 20 81-100 38-57 (82)
51 1vdy_A Hypothetical protein (R 32.8 60 0.0021 22.2 4.2 64 21-103 27-91 (140)
52 4a3n_A Transcription factor SO 32.7 15 0.00053 21.1 1.0 21 80-100 32-52 (71)
53 2lef_A LEF-1 HMG, protein (lym 32.4 23 0.00079 21.5 1.8 19 81-99 33-51 (86)
54 2eqz_A High mobility group pro 30.9 21 0.00073 21.6 1.5 19 81-99 48-66 (86)
55 1j46_A SRY, sex-determining re 30.3 26 0.0009 21.2 1.8 19 81-99 35-53 (85)
56 2z6g_A B-catenin; FULL-length, 29.2 1.9E+02 0.0065 24.2 7.5 64 24-87 150-223 (780)
57 2c0g_A ERP29 homolog, windbeut 28.7 1.5E+02 0.005 21.6 6.1 20 22-41 140-159 (248)
58 1jdh_A Beta-catenin; beta-cate 28.5 1.8E+02 0.0061 22.0 6.7 66 21-86 14-89 (529)
59 2cs1_A PMS1 protein homolog 1; 28.4 25 0.00086 21.7 1.5 21 80-100 37-57 (92)
60 1ckt_A High mobility group 1 p 27.8 14 0.00047 21.5 0.2 19 81-99 34-52 (71)
61 1sz9_A PCF11 protein; RNA poly 27.6 71 0.0024 21.5 3.9 55 23-80 27-86 (144)
62 2co9_A Thymus high mobility gr 27.2 32 0.0011 21.7 1.9 20 80-99 47-66 (102)
63 3u2b_C Transcription factor SO 27.1 22 0.00075 21.0 1.0 20 80-99 32-51 (79)
64 2nx9_A Oxaloacetate decarboxyl 26.0 57 0.0019 26.4 3.6 37 68-104 340-377 (464)
65 1zoq_C CREB-binding protein, i 25.9 47 0.0016 18.8 2.2 30 25-56 2-31 (47)
66 2vgl_B AP-2 complex subunit be 25.6 1.3E+02 0.0043 24.1 5.6 54 37-92 252-317 (591)
67 1i11_A Transcription factor SO 25.6 23 0.00079 21.2 0.9 19 81-99 35-53 (81)
68 2e6o_A HMG box-containing prot 25.6 24 0.00082 21.5 1.0 19 81-99 48-66 (87)
69 3jxy_A Alkylpurine DNA glycosy 25.5 1.8E+02 0.0062 20.6 7.1 72 33-109 35-109 (232)
70 1aab_A High mobility group pro 25.4 21 0.00072 21.5 0.7 18 82-99 41-58 (83)
71 3f27_D Transcription factor SO 24.8 25 0.00087 21.0 1.0 21 80-100 36-56 (83)
72 4hxt_A De novo protein OR329; 24.7 1.6E+02 0.0054 19.6 7.9 66 25-91 171-246 (252)
73 2qk1_A Protein STU2; STU2P, XM 24.7 1.9E+02 0.0065 20.5 7.1 64 23-87 103-176 (249)
74 1hme_A High mobility group pro 24.6 17 0.00057 21.5 0.1 20 80-99 36-55 (77)
75 2crj_A SWI/SNF-related matrix- 24.6 26 0.00091 21.5 1.1 20 80-99 37-56 (92)
76 1b0n_A Protein (SINR protein); 24.0 66 0.0023 19.4 3.0 22 85-106 82-104 (111)
77 1wgf_A Upstream binding factor 23.9 27 0.00092 21.5 1.0 21 80-100 50-70 (90)
78 3cki_B Metalloproteinase inhib 23.8 36 0.0012 22.2 1.7 17 87-103 99-115 (121)
79 4euw_A Transcription factor SO 23.6 41 0.0014 21.4 1.9 21 80-100 59-79 (106)
80 3v96_A Metalloproteinase inhib 23.2 35 0.0012 24.3 1.6 18 87-104 103-120 (184)
81 2rr7_A Dynein heavy chain 9; m 22.9 59 0.002 22.1 2.7 75 21-106 23-110 (155)
82 1xm9_A Plakophilin 1; armadill 22.5 2.7E+02 0.0091 21.4 9.8 69 26-100 4-82 (457)
83 2d7l_A WD repeat and HMG-box D 22.4 46 0.0016 20.3 1.9 19 81-99 37-55 (81)
84 4ffb_C Protein STU2; tubulin f 22.2 2.1E+02 0.0072 20.2 7.9 52 37-88 116-170 (278)
85 2lk2_A Homeobox protein TGIF1; 22.1 57 0.0019 20.7 2.3 10 91-100 32-41 (89)
86 1q8d_A GDNF family receptor al 21.7 56 0.0019 21.7 2.3 20 36-55 79-98 (108)
87 1x2n_A Homeobox protein pknox1 21.7 65 0.0022 18.7 2.5 35 77-111 18-59 (73)
88 2yyn_A Transcription intermedi 21.6 59 0.002 21.6 2.5 25 37-61 18-42 (135)
89 1y6i_A Mg-chelatase cofactor G 21.1 2.6E+02 0.0088 20.7 6.8 82 25-110 4-106 (233)
90 1v63_A Nucleolar transcription 20.8 49 0.0017 20.9 1.8 19 81-99 37-55 (101)
91 1k61_A Mating-type protein alp 20.6 1.2E+02 0.0041 16.7 3.5 35 77-111 9-50 (60)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.89 E-value=6e-24 Score=188.53 Aligned_cols=104 Identities=62% Similarity=0.998 Sum_probs=92.1
Q ss_pred CcCCCChHHHHHhhcccccCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHH
Q psy4090 2 ATVIPPNEQFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQIL 81 (112)
Q Consensus 2 ~~~~~~~~~~~~lld~~~~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiL 81 (112)
|+++.+ +||+.||||++++||+.||++|.++|+|++++|++|+++|.+||.+|++|..|..||+.|+++++||||+++|
T Consensus 7 ~~~~~~-~~~~~~ld~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L 85 (1073)
T 3gjx_A 7 MTMLAD-HAARQLLDFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQIL 85 (1073)
T ss_dssp --------CCCCCCSSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHhhCcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 677788 8999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCHHHHHHHHHHhHh
Q psy4090 82 EQVIKTRWKALPREQCDVKEEKERE 106 (112)
Q Consensus 82 e~~I~~~W~~Lp~eqr~~IRnyv~~ 106 (112)
++.|+++|+.||+++|.+||+++.+
T Consensus 86 ~~~I~~~W~~L~~e~~~~LR~~Ll~ 110 (1073)
T 3gjx_A 86 ENVIKTRWKILPRNQCEGIKKYVVG 110 (1073)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999975
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.86 E-value=8.8e-22 Score=173.58 Aligned_cols=97 Identities=43% Similarity=0.775 Sum_probs=94.3
Q ss_pred HHHHhhcccccCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Q psy4090 10 QFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW 89 (112)
Q Consensus 10 ~~~~lld~~~~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W 89 (112)
+|+.||||++|+||+.||++|.++|+|+++.|++|+++|.+|+.+|++|..|..||+.|+++++||||+++|++.|+++|
T Consensus 2 ~~~~~l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W 81 (1023)
T 4hat_C 2 AMEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKW 81 (1023)
T ss_dssp GGGGGGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHG
T ss_pred chhHhhCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhHh
Q psy4090 90 KALPREQCDVKEEKERE 106 (112)
Q Consensus 90 ~~Lp~eqr~~IRnyv~~ 106 (112)
+.+|+++|.+||+++.+
T Consensus 82 ~~L~~e~~~~Ir~~Ll~ 98 (1023)
T 4hat_C 82 KLLPNDHRIGIRNFVVG 98 (1023)
T ss_dssp GGSCHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 99999999999999875
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.79 E-value=3.5e-19 Score=154.83 Aligned_cols=97 Identities=43% Similarity=0.775 Sum_probs=94.0
Q ss_pred HHHHhhcccccCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Q psy4090 10 QFKKLLDFNQKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRW 89 (112)
Q Consensus 10 ~~~~lld~~~~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W 89 (112)
+|+.||||+.+.|++.|++++.++|+|+++.|++|++.|.+|+.+|++|..|..||+.|+++++||||+++|++.|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W 81 (1049)
T 3m1i_C 2 AMEGILDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKW 81 (1049)
T ss_dssp GGGGGGCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTG
T ss_pred hhhHhcCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhHh
Q psy4090 90 KALPREQCDVKEEKERE 106 (112)
Q Consensus 90 ~~Lp~eqr~~IRnyv~~ 106 (112)
..+|+++|.+||+++.+
T Consensus 82 ~~l~~~~~~~ir~~ll~ 98 (1049)
T 3m1i_C 82 KLLPNDHRIGIRNFVVG 98 (1049)
T ss_dssp GGSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999999999999875
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.64 E-value=1.4e-16 Score=136.47 Aligned_cols=87 Identities=23% Similarity=0.416 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090 20 KLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 20 ~~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~ 99 (112)
++|++.|++++.++|+|+++.|++|+++|.+|+.+|++|..|..||+.+.++++||||+++|++.|+++|+.+|+++|.+
T Consensus 3 ~~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 82 (971)
T 2x1g_F 3 PIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREE 82 (971)
T ss_dssp --------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHH
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHH
Confidence 47899999999999998777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHh
Q psy4090 100 KEEKERE 106 (112)
Q Consensus 100 IRnyv~~ 106 (112)
||+++.+
T Consensus 83 ir~~ll~ 89 (971)
T 2x1g_F 83 LKQKILE 89 (971)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999976
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.62 E-value=1.7e-15 Score=128.96 Aligned_cols=86 Identities=15% Similarity=0.275 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHhC-CChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090 21 LDITLLDNIVECMYT-GMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 21 ~dv~~Ld~vv~~~y~-~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~ 99 (112)
.|++.|++++.++|. ++++.|++|+++|.+|+.+|++|..|..||+.|.++++|+||+++|++.|+++|+.+|+++|.+
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 689999999999665 4556799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHh
Q psy4090 100 KEEKERE 106 (112)
Q Consensus 100 IRnyv~~ 106 (112)
||+++.+
T Consensus 101 ir~~ll~ 107 (963)
T 2x19_B 101 LKAQLFT 107 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 6
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=118.73 Aligned_cols=84 Identities=21% Similarity=0.201 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhCCC-h-HHHHHHHHHHHHHhcCCccHHHHHHHhc-cCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090 23 ITLLDNIVECMYTGM-G-VEQKAAQEVLTALKEHPDAWTRVDTILE-YSSNQQTKFYALQILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 23 v~~Ld~vv~~~y~~~-~-~~r~~A~~iL~~fk~~pdaw~~v~~IL~-~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~ 99 (112)
++.+.+++.++|+|+ + +.|++|++.|.+|+++|++|..|..+|. .+.++++||||+++|++.|+++|+.+|+++|.+
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~ 89 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY 89 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 456889999999983 3 4699999999999999999999999996 888999999999999999999999999999999
Q ss_pred HHHHhHh
Q psy4090 100 KEEKERE 106 (112)
Q Consensus 100 IRnyv~~ 106 (112)
||+++.+
T Consensus 90 Ir~~ll~ 96 (1204)
T 3a6p_A 90 LKNSVME 96 (1204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 7
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.39 E-value=9e-13 Score=115.74 Aligned_cols=83 Identities=14% Similarity=0.284 Sum_probs=74.5
Q ss_pred cCCHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHhcCCccHHHHHHHhccCc--hHHHHHHHHHHHHHHHhhcccCCCHH
Q psy4090 20 KLDITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPDAWTRVDTILEYSS--NQQTKFYALQILEQVIKTRWKALPRE 95 (112)
Q Consensus 20 ~~dv~~Ld~vv~~~y~~~--~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~--~~~tk~fALqiLe~~I~~~W~~Lp~e 95 (112)
|+|++.+.++++..|+|+ ++.|++|+++|.+||++|++|..|..||..+. ++++||||+++|++.|+ .+|++
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e 77 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNE 77 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChh
Confidence 788999999997767773 45799999999999999999999999998875 89999999999999999 69999
Q ss_pred ----HHHHHHHHhHh
Q psy4090 96 ----QCDVKEEKERE 106 (112)
Q Consensus 96 ----qr~~IRnyv~~ 106 (112)
++.+||+++.+
T Consensus 78 ~~~~~~~~lr~~ll~ 92 (980)
T 3ibv_A 78 SNLLELQMIRDSVWS 92 (980)
T ss_dssp TSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 99999999875
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.94 E-value=3.5e-09 Score=89.48 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhc--cCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILE--YSSNQQTKFYALQILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~--~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~ 99 (112)
++..|-+++...++|+++.|++|++.|.+++.+|+.|..+..|+. .+.++.+|++|...|.+.|+++|..++++.|..
T Consensus 11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ 90 (852)
T 4fdd_A 11 GLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDF 90 (852)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHH
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 355666677777888778899999999999999999999999997 689999999999999999999999999999999
Q ss_pred HHHHhHh
Q psy4090 100 KEEKERE 106 (112)
Q Consensus 100 IRnyv~~ 106 (112)
||+.+.+
T Consensus 91 ik~~ll~ 97 (852)
T 4fdd_A 91 IKSECLN 97 (852)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998864
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.81 E-value=1.6e-08 Score=87.14 Aligned_cols=83 Identities=11% Similarity=0.191 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHh-ccCchHHHHHHHHHHHHHHHhhccc------CCCH
Q psy4090 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTIL-EYSSNQQTKFYALQILEQVIKTRWK------ALPR 94 (112)
Q Consensus 22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL-~~S~~~~tk~fALqiLe~~I~~~W~------~Lp~ 94 (112)
|++.|.+++....+|+.+.| |++.|.+++.+|+.|..+..|+ +.+.++.+|++|+.+|.+.|+++|. .+|+
T Consensus 3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~ 80 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 (960)
T ss_dssp HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred cHHHHHHHHHHhcCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCH
Confidence 45566667766555544445 9999999999999999999999 4556789999999999999999998 8999
Q ss_pred HHHHHHHHHhHh
Q psy4090 95 EQCDVKEEKERE 106 (112)
Q Consensus 95 eqr~~IRnyv~~ 106 (112)
++|..||+.+.+
T Consensus 81 ~~k~~ik~~ll~ 92 (960)
T 1wa5_C 81 NNVELIKKEIVP 92 (960)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 10
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.71 E-value=3.6e-08 Score=75.93 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=71.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhc--CCccHHHHHHHhccC-chHHHHHHHHHHHHHHHhhc-----------ccC
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALKE--HPDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTR-----------WKA 91 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~--~pdaw~~v~~IL~~S-~~~~tk~fALqiLe~~I~~~-----------W~~ 91 (112)
|.+++..+++|+++.|++|++.|.+++. .|+.|..+..+|..+ .++.+|.+|..+|.+.|+++ |..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 5677888888888889999999999998 599999999999766 48999999999999999876 689
Q ss_pred CCHHHHHHHHHHhHh
Q psy4090 92 LPREQCDVKEEKERE 106 (112)
Q Consensus 92 Lp~eqr~~IRnyv~~ 106 (112)
++++.|..||+.+.+
T Consensus 83 l~~~~~~~ik~~ll~ 97 (462)
T 1ibr_B 83 IDANARREVKNYVLQ 97 (462)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.69 E-value=3.2e-08 Score=82.00 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHH-hCCChHHHHHHHHHHHHHhcC--CccHHHHHHHhccC-chHHHHHHHHHHHHHHHhhc--------
Q psy4090 21 LDITLLDNIVECM-YTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILEYS-SNQQTKFYALQILEQVIKTR-------- 88 (112)
Q Consensus 21 ~dv~~Ld~vv~~~-y~~~~~~r~~A~~iL~~fk~~--pdaw~~v~~IL~~S-~~~~tk~fALqiLe~~I~~~-------- 88 (112)
+|...|.+++... ++|+++.|++|++.|.+++.+ |+.|..+..+|..+ .++.+|++|+.+|.+.|+++
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 3667888999898 888888899999999999986 99999999999765 68999999999999999766
Q ss_pred ---ccC-CCHHHHHHHHHHhHh
Q psy4090 89 ---WKA-LPREQCDVKEEKERE 106 (112)
Q Consensus 89 ---W~~-Lp~eqr~~IRnyv~~ 106 (112)
|.. +|+++|..||+.+.+
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~ 102 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALT 102 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHH
Confidence 575 999999999988765
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.07 E-value=9.4e-06 Score=67.34 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcC--CccHHHHHHHhccC-chHHHHHHHHHHHHHHHh-----------hcccC
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALKEH--PDAWTRVDTILEYS-SNQQTKFYALQILEQVIK-----------TRWKA 91 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~--pdaw~~v~~IL~~S-~~~~tk~fALqiLe~~I~-----------~~W~~ 91 (112)
|.+++....+|..+.|++|++.|.+++.+ |+.|..+..+|..+ .++.+|.+|..+|.+.|+ .+|..
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 45667777777777899999999999988 99999998888654 579999999999999884 67999
Q ss_pred CCHHHHHHHHHHhHh
Q psy4090 92 LPREQCDVKEEKERE 106 (112)
Q Consensus 92 Lp~eqr~~IRnyv~~ 106 (112)
++++.|..||+.+.+
T Consensus 83 l~~~~~~~ik~~ll~ 97 (876)
T 1qgr_A 83 IDANARREVKNYVLH 97 (876)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988765
No 13
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.59 E-value=3.2 Score=28.24 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 21 ~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
-|....-.+|+..-..... -++|-+.|..- | .+++|++.++||.+|+.+++.
T Consensus 21 ~dw~~ileicD~I~~~~~~-~k~a~rai~Kr-------------l-~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 21 EDWGLILDICDKVGQSRTG-PKDCLRSIMRR-------------V-NHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp CCHHHHHHHHHHHTTSTTH-HHHHHHHHHHH-------------H-TCSSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCCCcC-HHHHHHHHHHH-------------H-cCCChHHHHHHHHHHHHHHHh
Confidence 4677777777776443222 23343433321 2 346788889999999988886
No 14
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=83.62 E-value=5.2 Score=27.69 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=24.4
Q ss_pred HHHHHhcCCccHHHHHHHh----ccCchHHHHHHHHHHHHHHHhh
Q psy4090 47 VLTALKEHPDAWTRVDTIL----EYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 47 iL~~fk~~pdaw~~v~~IL----~~S~~~~tk~fALqiLe~~I~~ 87 (112)
+-......++....+-..| ..+.|+++.++||.+||.+++.
T Consensus 40 icD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkN 84 (157)
T 1elk_A 40 ICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKN 84 (157)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444 2356788888888888888775
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=83.11 E-value=4.7 Score=27.79 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 21 ~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
-|....-.+|+..-..... -+.|-+.|.. =| .++||++.++||.+|+.+++.
T Consensus 17 ~dw~~~leicD~I~~~~~~-~k~a~rai~k-------------rl-~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 17 QDWSAIQNFCEQVNTDPNG-PTHAPWLLAH-------------KI-QSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp CCHHHHHHHHHHHHHSSHH-HHHHHHHHHH-------------HH-TCSSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCcc-HHHHHHHHHH-------------Hh-cCCCHHHHHHHHHHHHHHHHH
Confidence 3667777777776543322 2333333321 11 467899999999999999885
No 16
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.30 E-value=6.1 Score=27.35 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 21 ~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
-|....-.+|+........-+ .|-+.|.. =| .++||++.++||.+|+.+++.
T Consensus 27 ~dw~~ileicD~I~~~~~~pk-~a~ral~k-------------rl-~~~n~~v~l~AL~LLe~cvkN 78 (149)
T 3g2s_A 27 LDWASINGFCEQLNEDFEGPP-LATRLLAH-------------KI-QSPQEWEAIQALTVLETCMKS 78 (149)
T ss_dssp CCHHHHHHHHHHGGGSSSHHH-HHHHHHHH-------------HH-TCSSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCCCCcHH-HHHHHHHH-------------HH-cCCCHHHHHHHHHHHHHHHHh
Confidence 366777777777554332222 23222221 11 267888888888888888774
No 17
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.88 E-value=6.4 Score=28.78 Aligned_cols=20 Identities=35% Similarity=0.713 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHHHHHhh
Q psy4090 68 SSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 68 S~~~~tk~fALqiLe~~I~~ 87 (112)
++||++.++||.+||.+++.
T Consensus 56 ~~n~~v~l~aL~LLe~~vkN 75 (226)
T 3zyq_A 56 DKNPHVALYALEVMESVVKN 75 (226)
T ss_dssp CSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 78888999999999988875
No 18
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=81.31 E-value=6.4 Score=27.75 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=17.3
Q ss_pred cCchHHHHHHHHHHHHHHHhh
Q psy4090 67 YSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 67 ~S~~~~tk~fALqiLe~~I~~ 87 (112)
.++|+++.++||.+||.+++.
T Consensus 60 ~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 60 QSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp TCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 357888889999999988885
No 19
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=78.61 E-value=7.3 Score=27.19 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=17.9
Q ss_pred cCchHHHHHHHHHHHHHHHhh
Q psy4090 67 YSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 67 ~S~~~~tk~fALqiLe~~I~~ 87 (112)
.+++|++.++||.+||.+++.
T Consensus 62 ~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 62 NHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp TCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 457889999999999999885
No 20
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=78.53 E-value=3.9 Score=26.40 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHh-hcccCCCHHHHHHHHHHhHh
Q psy4090 73 TKFYALQILEQVIK-TRWKALPREQCDVKEEKERE 106 (112)
Q Consensus 73 tk~fALqiLe~~I~-~~W~~Lp~eqr~~IRnyv~~ 106 (112)
..+||| +-+|. .+|..||.+.|.++|.|...
T Consensus 53 ~~L~aL---~gAi~G~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3mab_A 53 SELYAL---EGAVQGIRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHHH---HHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHcCCcHHHCCHHHHHHHHHHHHH
Confidence 345654 44443 78999999999999999864
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=77.28 E-value=25 Score=27.76 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHh---cCC--------ccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCC
Q psy4090 25 LLDNIVECMYTGMGVEQKAAQEVLTALK---EHP--------DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (112)
Q Consensus 25 ~Ld~vv~~~y~~~~~~r~~A~~iL~~fk---~~p--------daw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp 93 (112)
.++.+|..+++++.+.|.+|-+-+.++- .+| +..+..-.+|+.+.++..++-|+-+|.++-.. +
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-----~ 132 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-----T 132 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-----C
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-----C
Confidence 3788999987766666777777666653 233 24666677788999999999999999997654 4
Q ss_pred HHHHHH
Q psy4090 94 REQCDV 99 (112)
Q Consensus 94 ~eqr~~ 99 (112)
.+++..
T Consensus 133 ~e~~~~ 138 (510)
T 3ul1_B 133 SEQTKA 138 (510)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 22
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.21 E-value=11 Score=27.07 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=17.5
Q ss_pred cCchHHHHHHHHHHHHHHHhh
Q psy4090 67 YSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 67 ~S~~~~tk~fALqiLe~~I~~ 87 (112)
.++||++.++||.+||.+++.
T Consensus 52 ~~~n~~~~l~aL~Lle~~vkN 72 (220)
T 1dvp_A 52 NSPNPHSSCYSLLVLESIVKN 72 (220)
T ss_dssp TCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhc
Confidence 357888999999999998885
No 23
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=76.87 E-value=11 Score=26.03 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=13.9
Q ss_pred CchHHHHHHHHHHHHHHHhh
Q psy4090 68 SSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 68 S~~~~tk~fALqiLe~~I~~ 87 (112)
+.|+.+.++||.+|+.+++.
T Consensus 65 ~~n~~~~l~AL~LLe~cvkN 84 (152)
T 3rru_A 65 NYNHKEIQLTLSLIDMCVQN 84 (152)
T ss_dssp CCBHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHh
Confidence 45666777777777777664
No 24
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=76.85 E-value=14 Score=24.73 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHH
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQ 83 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~ 83 (112)
++.++..+.++....|..|-..|..+. .+++...+-..|. +.++.++..|+..|-.
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQIG-DERAVEPLIKALK-DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTT-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 333444433333333444444444432 3344444333332 2344455555444443
No 25
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=70.77 E-value=34 Score=29.77 Aligned_cols=78 Identities=15% Similarity=0.107 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHhcCC------ccH----HHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCC
Q psy4090 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKEHP------DAW----TRVDTILEYSSNQQTKFYALQILEQVIKTRWKALP 93 (112)
Q Consensus 24 ~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~p------daw----~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp 93 (112)
..|.++++.+-++....|.+|..-|...-..+ +.. ..+-..|. +.++.+|..|+..|..++.. ++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~----~~ 80 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK----VK 80 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT----SC
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh----CC
Confidence 45677777776777678999877776654433 112 22233334 78899999999998888764 67
Q ss_pred HHHHHHHHHHhHh
Q psy4090 94 REQCDVKEEKERE 106 (112)
Q Consensus 94 ~eqr~~IRnyv~~ 106 (112)
++....|...+.+
T Consensus 81 ~~~~~~i~~~Ll~ 93 (1230)
T 1u6g_C 81 EYQVETIVDTLCT 93 (1230)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777676665543
No 26
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=70.19 E-value=5.5 Score=25.63 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHh-hcccCCCHHHHHHHHHHhHh
Q psy4090 74 KFYALQILEQVIK-TRWKALPREQCDVKEEKERE 106 (112)
Q Consensus 74 k~fALqiLe~~I~-~~W~~Lp~eqr~~IRnyv~~ 106 (112)
.+||+ +.+|. .+|..||++.|..++.+++.
T Consensus 54 ~L~aL---~gAi~G~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3bqs_A 54 ELYAL---EGAVQGIRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHH---HHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHcCCCHHHCCHHHHHHHHHHHHH
Confidence 46654 44443 78999999999999998864
No 27
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.90 E-value=27 Score=23.43 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHH
Q psy4090 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQ 83 (112)
Q Consensus 25 ~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~ 83 (112)
.++.++..+.++....|..|-..|..+. .+++...+-..| .+.++.++..|+..|-.
T Consensus 51 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l-~~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 51 AVEPLIKALKDEDAWVRRAAADALGQIG-DERAVEPLIKAL-KDEDGWVRQSAAVALGQ 107 (211)
T ss_dssp GHHHHHHHTTCSCHHHHHHHHHHHHHHC-CGGGHHHHHHHT-TCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhC-CHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 3444444444443334555555555544 344554444444 23455566666555544
No 28
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=54.50 E-value=45 Score=28.53 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Q psy4090 44 AQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTR 88 (112)
Q Consensus 44 A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~ 88 (112)
+..+-..|-.+++..+-.-.+| .+.+.++|++++++|+.+...|
T Consensus 110 ~~~~~d~f~~~~~~i~~Ll~lL-~~~df~vR~~alqlL~~L~~~r 153 (651)
T 3grl_A 110 GSQFTEIFIKQQENVTLLLSLL-EEFDFHVRWPGVKLLTSLLKQL 153 (651)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCccHHHHHHHh-cCccHHHHHHHHHHHHHHHhcC
Confidence 3455667778899988877777 5789999999999999999875
No 29
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=53.87 E-value=43 Score=22.91 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Q psy4090 22 DITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTR 88 (112)
Q Consensus 22 dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~ 88 (112)
....++.+..+-|+. ..-.....-+...+.+++..|.+| |=||.+|+.+|++-
T Consensus 22 ~~~~m~eIa~~T~~~-~~~~~Im~~l~kRL~d~~k~Wr~v-------------yKaL~lleyLl~nG 74 (144)
T 1eyh_A 22 SSSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHV-------------YKAMTLMEYLIKTG 74 (144)
T ss_dssp CHHHHHHHHHHTTSH-HHHHHHHHHHHHHHSCCGGGHHHH-------------HHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchHHH-------------hHHHHHHHHHHHhC
Confidence 466788888887764 222444555556667777788864 44777788877773
No 30
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=52.74 E-value=82 Score=24.73 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCc--------------------cHHHHHHHhc--cCchHHHHHHHHHHHHHHHhhcccCCCHHH-H
Q psy4090 41 QKAAQEVLTALKEHPD--------------------AWTRVDTILE--YSSNQQTKFYALQILEQVIKTRWKALPREQ-C 97 (112)
Q Consensus 41 r~~A~~iL~~fk~~pd--------------------aw~~v~~IL~--~S~~~~tk~fALqiLe~~I~~~W~~Lp~eq-r 97 (112)
-+.|-++|..|-+..+ -|..+-.+|+ .+.+..++.+|+.++..++.. .|.+. +
T Consensus 219 ~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~----apd~d~~ 294 (339)
T 3dad_A 219 VKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAA----LPDQDSF 294 (339)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHH----CSSHHHH
T ss_pred HHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc----CCChhHH
Confidence 4556666666655543 3888889996 578999999999998888776 57444 7
Q ss_pred HHHHHHhHhhh
Q psy4090 98 DVKEEKEREQN 108 (112)
Q Consensus 98 ~~IRnyv~~~~ 108 (112)
..+...+.++|
T Consensus 295 ~di~d~Le~~g 305 (339)
T 3dad_A 295 YDVTDALEQQG 305 (339)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 77777776665
No 31
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=51.86 E-value=42 Score=21.09 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHH
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQV 84 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~ 84 (112)
++.++..+.++...-|..|-..|..+. ++++...+-..| .+.++.++.-|...|...
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L-~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLL-EDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHH-HHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Confidence 355665555555456777877777665 355666655566 356777888777776553
No 32
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=51.54 E-value=51 Score=22.65 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Q psy4090 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTR 88 (112)
Q Consensus 23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~ 88 (112)
...++.++.+-|+. ..-.....-+...+.+++..|.+| |=||.+|+.+|++-
T Consensus 41 ~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~v-------------yKaL~lleyLl~nG 92 (148)
T 1inz_A 41 SSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHV-------------YKAMTLMEYLIKTG 92 (148)
T ss_dssp SCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHH-------------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHh-------------hHHHHHHHHHHHhC
Confidence 45677777776664 222334444555566666677754 55778888888874
No 33
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.83 E-value=53 Score=21.94 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHH
Q psy4090 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQV 84 (112)
Q Consensus 25 ~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~ 84 (112)
.++.++..+.++...-|..|-..|..+. .+++...+..+| .+.++.++.-|...|-..
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEIG-DERAVEPLIKAL-KDEDGWVRQSAADALGEI 170 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Confidence 3444554444444445666666666653 355555555555 345566776666665544
No 34
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=48.22 E-value=52 Score=23.06 Aligned_cols=63 Identities=13% Similarity=0.001 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHh----ccCchHHHHHHHHHHHHHHH
Q psy4090 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTIL----EYSSNQQTKFYALQILEQVI 85 (112)
Q Consensus 23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL----~~S~~~~tk~fALqiLe~~I 85 (112)
-..++.++..+.++....|..|-..|..+...+.+...+-.+| ..+.++.++..|+..|-..-
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRC 119 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 3455556665555554567778788877776655554333333 35677888888888777653
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=46.09 E-value=1.1e+02 Score=24.08 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHhcCC-----------ccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEHP-----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 25 ~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~p-----------daw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
.++.++..++++....+..|-+.+..+-... +..+..-.+|..+.++..++-|+.+|.++-..
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~ 150 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 150 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 4788898887766666777776666553322 23445556788899999999999999998654
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=44.59 E-value=78 Score=22.11 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHH
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQV 84 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~ 84 (112)
++.++..+.+++...|..|-..|..+. .|++...+-..|+ +.++.++..|...|-..
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l 81 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCS-DKNYIRRDIGAFILGQI 81 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT-CSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHc-CCCHHHHHHHHHHHHHh
Confidence 456666665555567888888888776 5677777666664 55778888888777543
No 37
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.02 E-value=67 Score=21.20 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHH
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQ 83 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~ 83 (112)
++.++..+.++...-|..|-..|..+. ++++...+-..| .+.++.++..|+..|-.
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIG-DERAVEPLIKAL-KDEDWFVRIAAAFALGE 133 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHT-TCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 334444333333334555555555442 344444444444 23345555555555543
No 38
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=42.71 E-value=94 Score=26.44 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhc--CCccHHH-HHHHhc--cCchHHHHHHHHHHHHHHHhhcccC--CCHHHHHH
Q psy4090 27 DNIVECMYTGMGVEQKAAQEVLTALKE--HPDAWTR-VDTILE--YSSNQQTKFYALQILEQVIKTRWKA--LPREQCDV 99 (112)
Q Consensus 27 d~vv~~~y~~~~~~r~~A~~iL~~fk~--~pdaw~~-v~~IL~--~S~~~~tk~fALqiLe~~I~~~W~~--Lp~eqr~~ 99 (112)
+.++..+..++..-|.++-.++..+-. -|+.|+. ++.+++ .|.++..+.=||.+|..+++ +|.. -+++.+.+
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~-~~~~~~~~~~~~~~ 166 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFK-RWRPLFRSDELFLE 166 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHG-GGTTSCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHhhcChHHHHH
Confidence 344555555554557777777766543 4788873 344443 34567788899999999765 4543 34555655
Q ss_pred HHHHh
Q psy4090 100 KEEKE 104 (112)
Q Consensus 100 IRnyv 104 (112)
++..+
T Consensus 167 l~~~l 171 (960)
T 1wa5_C 167 IKLVL 171 (960)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 39
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=42.65 E-value=1e+02 Score=22.79 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHh---cCC---------ccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALK---EHP---------DAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk---~~p---------daw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
+..+++.+.+++...|..|-..|..+- .+| +..+..-.+|..+.++.+++.|+.+|.++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 95 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG 95 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 566777776655566888888887752 233 45666666777666899999999999988763
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=39.84 E-value=1.2e+02 Score=22.95 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhcCC---------ccHHHHHHHhccCchHHHHHHHHHHHHHH
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALKEHP---------DAWTRVDTILEYSSNQQTKFYALQILEQV 84 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~p---------daw~~v~~IL~~S~~~~tk~fALqiLe~~ 84 (112)
++.++..+.++..+-|+.|-..|..+..++ +....+..+ ..+.++.++.+|+.+|..+
T Consensus 462 v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l-~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL-LHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG-GGCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHH-hcCCCHHHHHHHHHHHHhc
Confidence 355555566665566888888887776543 444544444 4678999999999998764
No 41
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=38.65 E-value=1.3e+02 Score=23.08 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCC-----------ccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHP-----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~p-----------daw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
...++.++..+.+++...|..|-..|..+-... +..+.+-.+|..+.++.+++-|+..|.++...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 344788888887766567888888887773322 36777777887777799999999999988763
No 42
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=37.61 E-value=60 Score=20.33 Aligned_cols=58 Identities=12% Similarity=0.193 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHH
Q psy4090 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILE 82 (112)
Q Consensus 23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe 82 (112)
-..++.++..+-+++..-|..|-..|..+. ++++...+-..|+ +.++.++.-|...|.
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-~~~a~~~L~~~l~-d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIG-GERVRAAMEKLAE-TGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC-SHHHHHHHHHHTT-SCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 345666666666666667888888888876 5667776666664 677888888877664
No 43
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=37.11 E-value=1e+02 Score=21.25 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCccHHHHHHHh--ccCchHHHHHHHHHHHHHHHhh
Q psy4090 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTIL--EYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pdaw~~v~~IL--~~S~~~~tk~fALqiLe~~I~~ 87 (112)
...+..++..+-+++..-|..|...|..+-....-=..+..++ =.++++.+|..++..|..++.+
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 3455666666655555579999999999887754322233333 2356899999999999998866
No 44
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=35.85 E-value=17 Score=20.99 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.2
Q ss_pred HHHHHhhcccCCCHHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~I 100 (112)
+...|..+|+.|++++|.--
T Consensus 29 i~k~lg~~Wk~ls~~eK~~y 48 (67)
T 3fgh_A 29 KLKTVKENWKNLSDSEKELY 48 (67)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHH
Confidence 45678999999999997643
No 45
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=35.11 E-value=1.5e+02 Score=22.60 Aligned_cols=89 Identities=10% Similarity=0.115 Sum_probs=61.6
Q ss_pred HHHhhcccccCCHHHHHHHHHHHhC----CChHHHHHHHHHHHHHhcCCccHHHH---HHHhccCchHHHHHHHHHHHHH
Q psy4090 11 FKKLLDFNQKLDITLLDNIVECMYT----GMGVEQKAAQEVLTALKEHPDAWTRV---DTILEYSSNQQTKFYALQILEQ 83 (112)
Q Consensus 11 ~~~lld~~~~~dv~~Ld~vv~~~y~----~~~~~r~~A~~iL~~fk~~pdaw~~v---~~IL~~S~~~~tk~fALqiLe~ 83 (112)
+..||. +.|++-..++.+.+++-+ +++--+.+|-+.|..++--..+-.-+ -.++ .|+++++|--|+..|.+
T Consensus 99 L~~LLe-~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 99 LGYLVK-DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV-VSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp HHHHHT-TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHH-hCCChhHHHHHHHHHHH
Confidence 334666 678888899988888543 33345888999998884333333332 3344 89999999999999998
Q ss_pred HHhhc-----ccCCCHHHHHHHH
Q psy4090 84 VIKTR-----WKALPREQCDVKE 101 (112)
Q Consensus 84 ~I~~~-----W~~Lp~eqr~~IR 101 (112)
.-.+. |+.+-.|-++-++
T Consensus 177 ia~~S~D~~i~~~I~~eI~elL~ 199 (265)
T 3b2a_A 177 MLNSSADSGHLTLILDEIPSLLQ 199 (265)
T ss_dssp HGGGCSSCCCGGGTTTTHHHHHT
T ss_pred hhcccCCHHHHHHHHHHHHHHHc
Confidence 87766 7777666555443
No 46
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=34.77 E-value=17 Score=21.35 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.8
Q ss_pred HHHHhhcccCCCHHHHHHH
Q psy4090 82 EQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 82 e~~I~~~W~~Lp~eqr~~I 100 (112)
...|...|+.|++++|.--
T Consensus 36 sk~lg~~Wk~ls~~eK~~y 54 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPF 54 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHH
Confidence 4566789999999997543
No 47
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=34.52 E-value=21 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=16.1
Q ss_pred HHHHHhhcccCCCHHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~I 100 (112)
+...|...|+.|++++|.--
T Consensus 33 isk~lg~~Wk~ls~eeK~~y 52 (80)
T 1gt0_D 33 ISKRLGAEWKLLSETEKRPF 52 (80)
T ss_dssp HHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 45678899999999997543
No 48
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=33.97 E-value=21 Score=23.39 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=25.2
Q ss_pred HHHHHhcCC-ccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Q psy4090 47 VLTALKEHP-DAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVKEEK 103 (112)
Q Consensus 47 iL~~fk~~p-daw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~IRny 103 (112)
.|..+-.+| +-|.. |...+-++.+++ .|-.+|+++|.+|=.-
T Consensus 51 tLs~lLr~P~kPW~~----L~~Gre~f~RM~-----------nWL~l~e~eR~eIl~~ 93 (101)
T 1wiz_A 51 LLSEILRKEEDPRTA----SQSLLVNLRAMQ-----------NFLNLPEVERDRIYQD 93 (101)
T ss_dssp HHHHHHHTCCCTTTC----CHHHHHHHHHHH-----------HHTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHH----HHHHHHHHHHHH-----------HHhcCCHHHHHHHHHH
Confidence 345556666 46664 234455555554 7888888888776443
No 49
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=33.87 E-value=1.6e+02 Score=22.69 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHhcC---C--------ccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEH---P--------DAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 25 ~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~---p--------daw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
.++.++..+.+++...|..|-..|..+-.. | +..+.+-.+|..+.++.+++-|+.+|.++...
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~ 161 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG 161 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 467778777666556788888888887432 2 35666666676666899999999999988764
No 50
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=33.18 E-value=19 Score=21.60 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHhhcccCCCHHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~I 100 (112)
+...|...|+.|++++|.--
T Consensus 38 isk~lg~~Wk~ls~~eK~~y 57 (82)
T 1wz6_A 38 ATKILADWWAVLDPKEKQKY 57 (82)
T ss_dssp HHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHH
Confidence 45567889999999997543
No 51
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.81 E-value=60 Score=22.19 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHhCCChH-HHHHHHHHHHHHhcCCccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q psy4090 21 LDITLLDNIVECMYTGMGV-EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 21 ~dv~~Ld~vv~~~y~~~~~-~r~~A~~iL~~fk~~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~ 99 (112)
-..-+++.|.+..|++... ......-++..|+ .++++++|=||.+|+.++++. ++.-+..
T Consensus 27 ~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~---------------~k~~~vk~KaL~lL~yL~~~G----s~~f~~~ 87 (140)
T 1vdy_A 27 APVYKLEEICDLLRSSHVSIVKEFSEFILKRLD---------------NKSPIVKQKALRLIKYAVGKS----GSEFRRE 87 (140)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---------------SSSHHHHHHHHHHHHHHTTTS----CHHHHHH
T ss_pred CcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhc---------------CCCcceeehHHHHHHHHHHhC----CHHHHHH
Confidence 3466777777777765432 2333333333332 234668999999999999874 5666666
Q ss_pred HHHH
Q psy4090 100 KEEK 103 (112)
Q Consensus 100 IRny 103 (112)
+|..
T Consensus 88 ~r~~ 91 (140)
T 1vdy_A 88 MQRN 91 (140)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6554
No 52
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=32.71 E-value=15 Score=21.13 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=16.6
Q ss_pred HHHHHHhhcccCCCHHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~I 100 (112)
-+...|...|+.|++++|.-.
T Consensus 32 eisk~lg~~Wk~ls~~eK~~y 52 (71)
T 4a3n_A 32 ELSKMLGKSWKALTLAEKRPF 52 (71)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHH
Confidence 356677899999999998643
No 53
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=32.42 E-value=23 Score=21.46 Aligned_cols=19 Identities=37% Similarity=0.753 Sum_probs=15.5
Q ss_pred HHHHHhhcccCCCHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~ 99 (112)
+...|...|+.|++++|.-
T Consensus 33 isk~lg~~Wk~ls~eeK~~ 51 (86)
T 2lef_A 33 INQILGRRWHALSREEQAK 51 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHH
Confidence 4567789999999999754
No 54
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.91 E-value=21 Score=21.65 Aligned_cols=19 Identities=16% Similarity=0.435 Sum_probs=15.5
Q ss_pred HHHHHhhcccCCCHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~ 99 (112)
+...|..+|+.|++++|.-
T Consensus 48 isk~lg~~Wk~ls~~eK~~ 66 (86)
T 2eqz_A 48 FSKKCSERWKTMSGKEKSK 66 (86)
T ss_dssp HHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 4567789999999999744
No 55
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=30.33 E-value=26 Score=21.18 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.3
Q ss_pred HHHHHhhcccCCCHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~ 99 (112)
+...|...|+.|++++|.-
T Consensus 35 isk~lg~~Wk~ls~eeK~~ 53 (85)
T 1j46_A 35 ISKQLGYQWKMLTEAEKWP 53 (85)
T ss_dssp HHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHH
Confidence 4567788999999999754
No 56
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=29.19 E-value=1.9e+02 Score=24.18 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHhc----------CCccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 24 TLLDNIVECMYTGMGVEQKAAQEVLTALKE----------HPDAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 24 ~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~----------~pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
..++.++..+.++....|..|-..|..+.. .+++...+-.+|..+.++.++..|+..|.++...
T Consensus 150 g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~ 223 (780)
T 2z6g_A 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH 223 (780)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 345555655555444568888888888776 3456666666777778999999999999985443
No 57
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=28.69 E-value=1.5e+02 Score=21.64 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHhCCChHHH
Q psy4090 22 DITLLDNIVECMYTGMGVEQ 41 (112)
Q Consensus 22 dv~~Ld~vv~~~y~~~~~~r 41 (112)
-+..+|.++..|+.+.+..+
T Consensus 140 ~i~~~d~l~~~f~~~~~~~~ 159 (248)
T 2c0g_A 140 CIKEFNEVLKNYANIPDAEQ 159 (248)
T ss_dssp CCHHHHHHHTTGGGSCHHHH
T ss_pred chHHHHHHHHHHhcccchhH
Confidence 37888999888888765443
No 58
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=28.49 E-value=1.8e+02 Score=21.95 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCC----------ccHHHHHHHhccCchHHHHHHHHHHHHHHHh
Q psy4090 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHP----------DAWTRVDTILEYSSNQQTKFYALQILEQVIK 86 (112)
Q Consensus 21 ~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~p----------daw~~v~~IL~~S~~~~tk~fALqiLe~~I~ 86 (112)
++...++.++..+.++....|..|-..|..+-.++ +....+-.+|..+.++.++..|+..|.++..
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 34445677776665555566888888888776543 4455555566777789999999999988643
No 59
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.36 E-value=25 Score=21.66 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=16.7
Q ss_pred HHHHHHhhcccCCCHHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~I 100 (112)
-+...|..+|+.|++++|.-.
T Consensus 37 eisk~lg~~Wk~ls~eeK~~y 57 (92)
T 2cs1_A 37 DATLQIEELWKTLSEEEKLKY 57 (92)
T ss_dssp HHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHH
Confidence 455677899999999998544
No 60
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=27.76 E-value=14 Score=21.46 Aligned_cols=19 Identities=16% Similarity=0.435 Sum_probs=15.3
Q ss_pred HHHHHhhcccCCCHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~ 99 (112)
+...|..+|+.|++++|.-
T Consensus 34 isk~lg~~Wk~ls~~eK~~ 52 (71)
T 1ckt_A 34 FSKKCSERWKTMSAKEKGK 52 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHH
T ss_pred HHHHHHHHHhhCCHHHHHH
Confidence 4567789999999998743
No 61
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=27.58 E-value=71 Score=21.53 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCCc-----cHHHHHHHhccCchHHHHHHHHHH
Q psy4090 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPD-----AWTRVDTILEYSSNQQTKFYALQI 80 (112)
Q Consensus 23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pd-----aw~~v~~IL~~S~~~~tk~fALqi 80 (112)
|..|-.+|... .......++.+-..++.-|- +.--+|.|+.++..+++.+||-.+
T Consensus 27 I~~LT~~a~~~---~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l 86 (144)
T 1sz9_A 27 ITTLTKLAEEN---ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNL 86 (144)
T ss_dssp HHHHHHHHHHT---GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56665555442 22345667777777776553 234568888999999999999743
No 62
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.21 E-value=32 Score=21.66 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=15.9
Q ss_pred HHHHHHhhcccCCCHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~ 99 (112)
-+...|...|+.|++++|.-
T Consensus 47 eisk~lg~~Wk~ls~eeK~~ 66 (102)
T 2co9_A 47 EVSKIVASMWDGLGEEQKQV 66 (102)
T ss_dssp HHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHH
Confidence 35567789999999999754
No 63
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=27.09 E-value=22 Score=21.00 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.1
Q ss_pred HHHHHHhhcccCCCHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~ 99 (112)
-+...|...|+.|++++|.-
T Consensus 32 eisk~lg~~Wk~ls~~eK~~ 51 (79)
T 3u2b_C 32 EISKRLGKRWKLLKDSDKIP 51 (79)
T ss_dssp HHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 35667789999999999754
No 64
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=26.00 E-value=57 Score=26.44 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.1
Q ss_pred CchHHHHHHHHHHHHHHHhh-cccCCCHHHHHHHHHHh
Q psy4090 68 SSNQQTKFYALQILEQVIKT-RWKALPREQCDVKEEKE 104 (112)
Q Consensus 68 S~~~~tk~fALqiLe~~I~~-~W~~Lp~eqr~~IRnyv 104 (112)
.-.|.++|.|.+.+-++++. ||+.+|.+-+.-++.++
T Consensus 340 ~VTP~Sq~~g~~A~~~vl~~~~~~~~~~~~~~~~~G~~ 377 (464)
T 2nx9_A 340 LVTPTSQIVGTQAVINVVLGERYKTITKETSGVLKGEY 377 (464)
T ss_dssp SCTTHHHHHHHHHHHHHHTSSTTSSCCHHHHHHHTTTT
T ss_pred ccCchhHhhHHHHHHHHHcCCccccCCHHHHHHhCCCC
Confidence 35688899999988888887 99999999988777664
No 65
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=25.90 E-value=47 Score=18.83 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHhcCCc
Q psy4090 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEHPD 56 (112)
Q Consensus 25 ~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~pd 56 (112)
.|.+++..+-+|+++++ -+++|.-++.+|.
T Consensus 2 aLqqLl~tlksp~sp~q--qqqvl~ILksnPq 31 (47)
T 1zoq_C 2 ALQDLLRTLKSPSSPQQ--QQQVLNILKSNPQ 31 (47)
T ss_dssp HHHHHHHTCCSCCCHHH--HHHHHHHHHTCHH
T ss_pred HHHHHHHHhcCCCCHHH--HHHHHHHHHcCHH
Confidence 46677777777765532 2445555677775
No 66
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=25.61 E-value=1.3e+02 Score=24.15 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHh----cCCccHHHHH--------HHhccCchHHHHHHHHHHHHHHHhhcccCC
Q psy4090 37 MGVEQKAAQEVLTALK----EHPDAWTRVD--------TILEYSSNQQTKFYALQILEQVIKTRWKAL 92 (112)
Q Consensus 37 ~~~~r~~A~~iL~~fk----~~pdaw~~v~--------~IL~~S~~~~tk~fALqiLe~~I~~~W~~L 92 (112)
+..-+-+|-+.+..+. .+|+....|. .++ ++++++||.|+..|..+++++=..+
T Consensus 252 ~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~--~~d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 252 NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL--SGEPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT--TSCHHHHHHHHHHHHHHHHHCCSTT
T ss_pred ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHhChHHH
Confidence 3345777888887775 3566655322 233 4789999999999999888654433
No 67
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=25.59 E-value=23 Score=21.15 Aligned_cols=19 Identities=21% Similarity=0.592 Sum_probs=15.1
Q ss_pred HHHHHhhcccCCCHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~ 99 (112)
+...|...|+.|++++|.-
T Consensus 35 isk~lg~~Wk~ls~eeK~~ 53 (81)
T 1i11_A 35 ISKILGSRWKAMTNLEKQP 53 (81)
T ss_dssp HHHHHHHHHTTSCSGGGHH
T ss_pred HHHHHHhhhhhCCHHHHHH
Confidence 4567789999999998743
No 68
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=25.58 E-value=24 Score=21.51 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=15.4
Q ss_pred HHHHHhhcccCCCHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~ 99 (112)
+...|...|+.|++++|.-
T Consensus 48 isk~lg~~Wk~ls~eeK~~ 66 (87)
T 2e6o_A 48 ISVILGDRWKKMKNEERRM 66 (87)
T ss_dssp HHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHH
Confidence 4567788999999999854
No 69
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=25.51 E-value=1.8e+02 Score=20.59 Aligned_cols=72 Identities=10% Similarity=0.167 Sum_probs=47.2
Q ss_pred HhCCChH-HHHHHHHHHHHHhcC-CccH-HHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhHhhhh
Q psy4090 33 MYTGMGV-EQKAAQEVLTALKEH-PDAW-TRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPREQCDVKEEKEREQNW 109 (112)
Q Consensus 33 ~y~~~~~-~r~~A~~iL~~fk~~-pdaw-~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~eqr~~IRnyv~~~~~ 109 (112)
|++=..+ -|+.|-++....+.. ...| ..+..+.+. .....+++|+.+|... .+.++++....++.||...+|
T Consensus 35 ~lGVr~P~lR~laK~~~k~~~~~~~~~~~~~~~~L~~~-~~~E~r~~ai~~l~~~----~k~~~~~~l~~~~~~l~~~~n 109 (232)
T 3jxy_A 35 FLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDL-PEREFQAAALDIMQKY----KKHINETHIPFLEELIVTKSW 109 (232)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHTS-SBHHHHHHHHHHHHHT----GGGCCGGGHHHHHHHHTSSCC
T ss_pred eeccChHHHHHHHHHHHHhccccchhhHHHHHHHHhcC-cHHHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHccCCC
Confidence 3333444 477788876655432 2467 477777754 4667999999988643 334677777788888876555
No 70
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=25.42 E-value=21 Score=21.45 Aligned_cols=18 Identities=17% Similarity=0.422 Sum_probs=14.5
Q ss_pred HHHHhhcccCCCHHHHHH
Q psy4090 82 EQVIKTRWKALPREQCDV 99 (112)
Q Consensus 82 e~~I~~~W~~Lp~eqr~~ 99 (112)
...|..+|+.|++++|.-
T Consensus 41 sk~lg~~Wk~ls~~eK~~ 58 (83)
T 1aab_A 41 SKKCSERWKTMSAKEKGK 58 (83)
T ss_dssp HHHHHHHHTTSCTTHHHH
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 456688999999999754
No 71
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=24.85 E-value=25 Score=20.96 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=16.6
Q ss_pred HHHHHHhhcccCCCHHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~I 100 (112)
-+...|...|+.|++++|.-.
T Consensus 36 eisk~lg~~Wk~ls~~eK~~y 56 (83)
T 3f27_D 36 ELSKMLGKSWKALTLAEKRPF 56 (83)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHH
Confidence 456777899999999997643
No 72
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=24.68 E-value=1.6e+02 Score=19.56 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHhcC----------CccHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccC
Q psy4090 25 LLDNIVECMYTGMGVEQKAAQEVLTALKEH----------PDAWTRVDTILEYSSNQQTKFYALQILEQVIKTRWKA 91 (112)
Q Consensus 25 ~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~----------pdaw~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~ 91 (112)
.++.++..+.+++..-|..|-..|..+-.. .+..+.+-.+|. +.++.++..|+.+|.++.......
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT-STDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC-CCcHHHHHHHHHHHHHHHcCCCcc
Confidence 455566555544445677787777777652 233455555554 567789999999999988775543
No 73
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=24.68 E-value=1.9e+02 Score=20.52 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCC----------ccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 23 ITLLDNIVECMYTGMGVEQKAAQEVLTALKEHP----------DAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 23 v~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~p----------daw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
...|..+++.+=+....-|..|...|..+-++- +.+..+-..| .++++++|.-++..|..++..
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-KHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHH
Confidence 445666666664444445777888787777643 2222333333 556899999999999999976
No 74
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=24.59 E-value=17 Score=21.48 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=16.1
Q ss_pred HHHHHHhhcccCCCHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~ 99 (112)
-+...|...|+.|++++|.-
T Consensus 36 eisk~lg~~Wk~ls~~eK~~ 55 (77)
T 1hme_A 36 DVAKKLGEMWNNTAADDKQP 55 (77)
T ss_dssp HHHHHHHHHHHHSCGGGSHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 45577889999999999753
No 75
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=24.56 E-value=26 Score=21.54 Aligned_cols=20 Identities=10% Similarity=0.342 Sum_probs=16.0
Q ss_pred HHHHHHhhcccCCCHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~ 99 (112)
-+...|...|+.|++++|.-
T Consensus 37 eisk~lg~~Wk~ls~eeK~~ 56 (92)
T 2crj_A 37 EITKMLGAEWSKLQPAEKQR 56 (92)
T ss_dssp HHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 35567789999999999754
No 76
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=23.99 E-value=66 Score=19.40 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=17.4
Q ss_pred Hhhcc-cCCCHHHHHHHHHHhHh
Q psy4090 85 IKTRW-KALPREQCDVKEEKERE 106 (112)
Q Consensus 85 I~~~W-~~Lp~eqr~~IRnyv~~ 106 (112)
|...+ ..|++++++.|..|+..
T Consensus 82 l~~~~~~~l~~e~~~~i~~~i~~ 104 (111)
T 1b0n_A 82 VRDAMTSGVSKKQFREFLDYQKW 104 (111)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 33445 78999999999999864
No 77
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.85 E-value=27 Score=21.45 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=16.2
Q ss_pred HHHHHHhhcccCCCHHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~I 100 (112)
-+...|...|+.|++++|.-.
T Consensus 50 eisk~lg~~Wk~ls~eeK~~Y 70 (90)
T 1wgf_A 50 ELTRLLARMWNDLSEKKKAKY 70 (90)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 345677899999999997543
No 78
>3cki_B Metalloproteinase inhibitor 3; extra-cellular matrix, catalytic zinc, SA-SB loop, alternative splicing, cleavage on PAIR of basic residues; 2.30A {Homo sapiens}
Probab=23.84 E-value=36 Score=22.24 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=15.1
Q ss_pred hcccCCCHHHHHHHHHH
Q psy4090 87 TRWKALPREQCDVKEEK 103 (112)
Q Consensus 87 ~~W~~Lp~eqr~~IRny 103 (112)
.+|..++.+||.++|.-
T Consensus 99 ~~W~~ls~~qk~~~~~~ 115 (121)
T 3cki_B 99 ERWDQLTLSQRKGLNYR 115 (121)
T ss_dssp EETTTCCHHHHHHHHTT
T ss_pred eEchhCCHHHHHHHHHH
Confidence 68999999999999864
No 79
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=23.57 E-value=41 Score=21.38 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=16.7
Q ss_pred HHHHHHhhcccCCCHHHHHHH
Q psy4090 80 ILEQVIKTRWKALPREQCDVK 100 (112)
Q Consensus 80 iLe~~I~~~W~~Lp~eqr~~I 100 (112)
-+...|...|+.|++++|.-.
T Consensus 59 eisk~lg~~Wk~ls~eeK~~Y 79 (106)
T 4euw_A 59 ELSKTLGKLWRLLNESEKRPF 79 (106)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 356777899999999998653
No 80
>3v96_A Metalloproteinase inhibitor 1; metzincin, OB-fold, metalloproteinase, protease inhibitor, H inhibitor-hydrolase complex; 1.90A {Homo sapiens} PDB: 1uea_B 1d2b_A 1oo9_B 2j0t_D 3ma2_B
Probab=23.20 E-value=35 Score=24.34 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.8
Q ss_pred hcccCCCHHHHHHHHHHh
Q psy4090 87 TRWKALPREQCDVKEEKE 104 (112)
Q Consensus 87 ~~W~~Lp~eqr~~IRnyv 104 (112)
..|..|+..||.|++...
T Consensus 103 ~pW~~lt~~Qrkgl~~~Y 120 (184)
T 3v96_A 103 APWNSLSLAQRRGFTKTY 120 (184)
T ss_dssp EEGGGSCHHHHHHHHTTG
T ss_pred eEhHHCCHHHHhhhHHHH
Confidence 689999999999998654
No 81
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=22.89 E-value=59 Score=22.12 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHhcCC-------------ccHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Q psy4090 21 LDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHP-------------DAWTRVDTILEYSSNQQTKFYALQILEQVIKT 87 (112)
Q Consensus 21 ~dv~~Ld~vv~~~y~~~~~~r~~A~~iL~~fk~~p-------------daw~~v~~IL~~S~~~~tk~fALqiLe~~I~~ 87 (112)
++-..+..+= +|-+|...-+...+-++.-+...| ++|..+..+|... .| |+.+++.
T Consensus 23 l~k~di~Eik-s~~~PP~~V~~vmeaV~iLl~~~~~~~~~~~~g~~~~~~W~~~k~~l~~~-----~F-----l~~L~~f 91 (155)
T 2rr7_A 23 LKPADITEVK-GMKSPPAGVRRVLEAICIMKGVKPARVKDTASGRMVDDYWEASKKMLMEF-----DF-----LDSLRKF 91 (155)
T ss_dssp SCHHHHHHHH-HSSSCCTTHHHHHHHHHTTTTCCCCCEECTTTCSEECCHHHHHHHHHSCS-----SH-----HHHHHHS
T ss_pred CCHHHHHHHH-ccCCCcHHHHHHHHHHHHHcCCCCcccCCCccccccCCCHHHHHHHhchH-----HH-----HHHHHhc
Confidence 3444444333 555555555666666665555544 5899999999654 23 4666666
Q ss_pred cccCCCHHHHHHHHHHhHh
Q psy4090 88 RWKALPREQCDVKEEKERE 106 (112)
Q Consensus 88 ~W~~Lp~eqr~~IRnyv~~ 106 (112)
.=..+|++....|+.|+..
T Consensus 92 dkd~I~~~~~~~l~~yl~~ 110 (155)
T 2rr7_A 92 DKDHIPPEVIVKIRPFAQD 110 (155)
T ss_dssp CGGGCCHHHHTTSTTTSSC
T ss_pred CcccChHHHHHHHHHHhcC
Confidence 6678999999989888764
No 82
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=22.50 E-value=2.7e+02 Score=21.42 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHh-cCCccH---------HHHHHHhccCchHHHHHHHHHHHHHHHhhcccCCCHH
Q psy4090 26 LDNIVECMYTGMGVEQKAAQEVLTALK-EHPDAW---------TRVDTILEYSSNQQTKFYALQILEQVIKTRWKALPRE 95 (112)
Q Consensus 26 Ld~vv~~~y~~~~~~r~~A~~iL~~fk-~~pdaw---------~~v~~IL~~S~~~~tk~fALqiLe~~I~~~W~~Lp~e 95 (112)
++.+|..+.+++...|..|-..|..+- .+++.. +..-.+|. |.++.+++-|...|.++... .++
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~-----~~~ 77 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFR-----STT 77 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSS-----CHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcC-----CHH
Confidence 445566665555556667777777664 334434 34444555 67889999999999998763 355
Q ss_pred HHHHH
Q psy4090 96 QCDVK 100 (112)
Q Consensus 96 qr~~I 100 (112)
.|..|
T Consensus 78 ~k~~i 82 (457)
T 1xm9_A 78 NKLET 82 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 83
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.36 E-value=46 Score=20.28 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.1
Q ss_pred HHHHHhhcccCCCHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~ 99 (112)
+...+..+|+.|+.++|.-
T Consensus 37 isK~lge~Wk~ls~eeK~~ 55 (81)
T 2d7l_A 37 IIKEGMIRFRVLSTEERKV 55 (81)
T ss_dssp HHHHHHHHHSSSCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 4466789999999999843
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=22.24 E-value=2.1e+02 Score=20.18 Aligned_cols=52 Identities=6% Similarity=-0.015 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHHhcCCccHHHH-HHHh--ccCchHHHHHHHHHHHHHHHhhc
Q psy4090 37 MGVEQKAAQEVLTALKEHPDAWTRV-DTIL--EYSSNQQTKFYALQILEQVIKTR 88 (112)
Q Consensus 37 ~~~~r~~A~~iL~~fk~~pdaw~~v-~~IL--~~S~~~~tk~fALqiLe~~I~~~ 88 (112)
....|..|...|..+-+....-..| ..|+ -.++||.++--++..|..+|..-
T Consensus 116 k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 116 RATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 3446788888888877655443333 3444 46889999999999999998763
No 85
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=22.10 E-value=57 Score=20.69 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=4.7
Q ss_pred CCCHHHHHHH
Q psy4090 91 ALPREQCDVK 100 (112)
Q Consensus 91 ~Lp~eqr~~I 100 (112)
-.+.++|..|
T Consensus 32 YPs~~ek~~L 41 (89)
T 2lk2_A 32 YPSEQEKALL 41 (89)
T ss_dssp SCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3444555444
No 86
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=21.72 E-value=56 Score=21.70 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHHhcCC
Q psy4090 36 GMGVEQKAAQEVLTALKEHP 55 (112)
Q Consensus 36 ~~~~~r~~A~~iL~~fk~~p 55 (112)
++|+.+.+.+++|.-|.+++
T Consensus 79 ~SGN~~eeCe~fl~~Ft~N~ 98 (108)
T 1q8d_A 79 NSGNDLEDCLKFLNFFKDNT 98 (108)
T ss_dssp TCGGGHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHHHHccCH
Confidence 47788999999999999884
No 87
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.70 E-value=65 Score=18.70 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhc--ccCCCHHHHHHHHHHhH-----hhhhhc
Q psy4090 77 ALQILEQVIKTR--WKALPREQCDVKEEKER-----EQNWFQ 111 (112)
Q Consensus 77 ALqiLe~~I~~~--W~~Lp~eqr~~IRnyv~-----~~~~~~ 111 (112)
.+.+|+.....+ ....+.++++.|-..+. =++|||
T Consensus 18 q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFq 59 (73)
T 1x2n_A 18 ATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFI 59 (73)
T ss_dssp HHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhH
Confidence 455677766432 34566777777644431 257775
No 88
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=21.62 E-value=59 Score=21.57 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHHHhcCCccHHHH
Q psy4090 37 MGVEQKAAQEVLTALKEHPDAWTRV 61 (112)
Q Consensus 37 ~~~~r~~A~~iL~~fk~~pdaw~~v 61 (112)
+..+++.+.++|..+..++.+|.+.
T Consensus 18 ~p~~~~~c~~il~~L~~~~~s~~F~ 42 (135)
T 2yyn_A 18 TPIDKRKCERLLLFLYCHEMSLAFQ 42 (135)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGGGGS
T ss_pred CHHHHHHHHHHHHHHHhCccchhhc
Confidence 4457889999999999999999863
No 89
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=21.11 E-value=2.6e+02 Score=20.73 Aligned_cols=82 Identities=12% Similarity=-0.030 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCChHHHH---------------HHHHHHHHHh-cCCccHHH--HHHHhccCchHHHHHHHHHHHHHHHh
Q psy4090 25 LLDNIVECMYTGMGVEQK---------------AAQEVLTALK-EHPDAWTR--VDTILEYSSNQQTKFYALQILEQVIK 86 (112)
Q Consensus 25 ~Ld~vv~~~y~~~~~~r~---------------~A~~iL~~fk-~~pdaw~~--v~~IL~~S~~~~tk~fALqiLe~~I~ 86 (112)
.++.+...|++++...|. ....+|..+. ..++-|-. +-.+|.+.+.+.+.-|. ...-.
T Consensus 4 ~~~~l~~~~~s~s~~~~~~~i~~i~~~~~~~~~~~~~~l~~~~p~~~~~w~~g~~~~~l~~~~~~~i~~~l----~~~~~ 79 (233)
T 1y6i_A 4 NLTELSQQLHDASEKKQLTAIAALAEMGEGGQGILLDYLAKNVPLEKPVLAVGNVYQTLRNLEQETITTQL----QRNYP 79 (233)
T ss_dssp HHHHHHHHHHHSCTTTHHHHHHHHHTSHHHHHHHHHHHHHHHCSCSSCCHHHHHHHHHHHHTCCHHHHHHH----HHHCT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHhcCcHHHHHHH----HhcCC
Confidence 356666666666543332 2244555555 66667743 33445666666655552 12122
Q ss_pred hcccCCCHHH---HHHHHHHhHhhhhh
Q psy4090 87 TRWKALPREQ---CDVKEEKEREQNWF 110 (112)
Q Consensus 87 ~~W~~Lp~eq---r~~IRnyv~~~~~~ 110 (112)
..|-.|..+. ...+++++.+++|-
T Consensus 80 ~~~~~l~S~~gidY~~L~~lL~~~~wk 106 (233)
T 1y6i_A 80 TGIFPLQSAQGIDYLPLQEALGSQDFE 106 (233)
T ss_dssp TCSSCCCCSSCCCCHHHHHHHHTTCHH
T ss_pred CCCcccccccCcCHHHHHHHHHhCCHH
Confidence 2333333332 45566666666663
No 90
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.79 E-value=49 Score=20.86 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.4
Q ss_pred HHHHHhhcccCCCHHHHHH
Q psy4090 81 LEQVIKTRWKALPREQCDV 99 (112)
Q Consensus 81 Le~~I~~~W~~Lp~eqr~~ 99 (112)
+-..|-.+|+.|++++|.-
T Consensus 37 isK~lge~Wk~ls~~eK~~ 55 (101)
T 1v63_A 37 RMVEIGSRWQRISQSQKEH 55 (101)
T ss_dssp HHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH
Confidence 4567889999999999743
No 91
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=20.59 E-value=1.2e+02 Score=16.69 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhc--ccCCCHHHHHHHHHHhH-----hhhhhc
Q psy4090 77 ALQILEQVIKTR--WKALPREQCDVKEEKER-----EQNWFQ 111 (112)
Q Consensus 77 ALqiLe~~I~~~--W~~Lp~eqr~~IRnyv~-----~~~~~~ 111 (112)
.+.+|+.....+ ....+.+++..|-.-+. =++||+
T Consensus 9 q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFq 50 (60)
T 1k61_A 9 NVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVS 50 (60)
T ss_dssp HHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 345566655543 34455556666544331 156765
Done!