RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4090
         (112 letters)



>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 888

 Score = 38.1 bits (87), Expect = 8e-05
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 40 EQKAAQEVLTALKEHPDAWTRVDTILEY--SSNQQTKFYALQILEQVIKTRWKALPREQ 96
           Q+  Q+ L  L ++PD    +  +L    S ++ T+  +  IL+  +K  ++  P   
Sbjct: 27 IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 85


>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 31.4 bits (70), Expect = 0.017
 Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 1/66 (1%)

Query: 40  EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQ-QTKFYALQILEQVIKTRWKALPREQCD 98
             K ++  L  L+        +  ++  ++    T+       +  IK +W         
Sbjct: 19  TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78

Query: 99  VKEEKE 104
                E
Sbjct: 79  PANNVE 84


>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus
          subtilis [TaxId: 1423]}
          Length = 177

 Score = 27.8 bits (62), Expect = 0.18
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 23 ITLLDNIVECMYTGM--GVEQKAAQEVLTALKEHPD 56
          I  LD  +E +      GVE  AA+      +E+PD
Sbjct: 36 IAFLDEGLEWILISGQLGVELWAAEAAYDLQEEYPD 71


>d2nrha1 c.55.1.13 (A:1-82) Type III pantothenate kinase, CoaX
          {Campylobacter jejuni [TaxId: 197]}
          Length = 82

 Score = 25.9 bits (57), Expect = 0.52
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 5  IPPNEQFKKLLDFNQKLDITLLDNI-VECMYTGMGVEQKAA 44
          I  NE  K+ L  NQK  I L      + +Y G+G+++ AA
Sbjct: 39 INVNEHLKEHLK-NQKNFINLEPYFLFDTIYQGLGIDRIAA 78


>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
          106590]}
          Length = 129

 Score = 24.0 bits (52), Expect = 3.6
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 7/52 (13%)

Query: 27 DNIVECMYTGMGVEQKAAQEVLTA----LKEHPDAWTRVDTILEYSSNQQTK 74
           N    M+     + + A  +L          P+ + R   +  + S    +
Sbjct: 44 RNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIR---VTAFDSTHTVE 92


>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 111

 Score = 23.7 bits (51), Expect = 5.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 38 GVEQKAAQEVLTALKEHPDAW 58
          G    A Q +LT L+ H  AW
Sbjct: 2  GPHDAAIQNILTELQNHAAAW 22


>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 322

 Score = 24.0 bits (52), Expect = 5.2
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 3   TVIPPNEQFKKLLDFNQKLDITLLDNIVECM 33
           T + P E+ + L +   ++D  ++D  +  +
Sbjct: 288 TKLMPEERKELLENILAEVDSDIIDKSLSEI 318


>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 143

 Score = 23.5 bits (51), Expect = 5.7
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 19  QKLDITLLDNIVECMYTGMGVEQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQT 73
           Q LD   +D +++ +Y G       +  VL    E   A   V +I+   + ++T
Sbjct: 88  QSLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLTARKT 142


>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
          carboxylase-oxygenase {Galdieria partita [TaxId:
          83374]}
          Length = 138

 Score = 23.3 bits (50), Expect = 7.4
 Identities = 5/46 (10%), Positives = 17/46 (36%), Gaps = 7/46 (15%)

Query: 33 MYTGMGVEQKAAQEVLTAL----KEHPDAWTRVDTILEYSSNQQTK 74
          ++     +      VL  +    K   + + +   ++ +SS +  +
Sbjct: 50 IWGLPLFDVTDPAAVLFEINACRKARSNFYIK---VVGFSSVRGIE 92


>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 122

 Score = 23.3 bits (50), Expect = 7.6
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 8/46 (17%)

Query: 40  EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVI 85
             +  +E+  A K +PDA+ R   I+ + + +Q      Q++  + 
Sbjct: 79  ATQVLKELEEAKKAYPDAFVR---IIGFDNVRQV-----QLISFIA 116


>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 153

 Score = 23.3 bits (50), Expect = 8.9
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 10/47 (21%)

Query: 40 EQKAAQEVLTALKEHPDAWTRVDTILEYSSNQQTKFYALQILEQVIK 86
           ++  ++ L A+K+           +  + N      AL +LE  +K
Sbjct: 43 TEEGPKDALRAVKKR----------IVGNKNFHEVMLALTVLETCVK 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 418,750
Number of extensions: 16201
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 20
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)