BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4093
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1F|A Chain A, Human Ump Synthase (c-terminal Domain-orotidine
5'-monophosphate Decarboxylase)
Length = 291
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 125 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 182
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 183 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 212
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 213 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 272
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 273 AAEMYRKAAWEAYLSRL 289
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 50 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 109
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 110 ITLAKXHEFLIFEDRKFADI 129
>pdb|2EAW|A Chain A, Human Ump Synthase (C-Terminal Domain- Orotidine 5'-
Monophosphate Decarboxylase)
pdb|2EAW|B Chain B, Human Ump Synthase (C-Terminal Domain- Orotidine 5'-
Monophosphate Decarboxylase)
pdb|3BGG|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Bmp
pdb|3BGJ|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 6-Iodo-Ump
pdb|3BGJ|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 6-Iodo-Ump
Length = 291
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 125 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 182
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 183 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 212
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 213 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 272
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 273 AAEMYRKAAWEAYLSRL 289
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 50 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 109
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 110 ITLAKCHEFLIFEDRKFADI 129
>pdb|2JGY|A Chain A, The Crystal Structure Of Human Orotidine-5'-Decarboxylase
Domain Of Human Uridine Monophosphate Synthetase (Umps)
pdb|2JGY|B Chain B, The Crystal Structure Of Human Orotidine-5'-Decarboxylase
Domain Of Human Uridine Monophosphate Synthetase (Umps)
pdb|2V30|A Chain A, Human Orotidine 5'-Phosphate Decarboxylase Domain Of
Uridine Monophospate Synthetase (Umps) In Complex With
Its Product Ump.
pdb|2V30|B Chain B, Human Orotidine 5'-Phosphate Decarboxylase Domain Of
Uridine Monophospate Synthetase (Umps) In Complex With
Its Product Ump
Length = 279
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 114 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 171
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 172 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 201
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 202 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 261
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 262 AAEMYRKAAWEAYLSRL 278
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 39 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 98
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 99 ITLAKCHEFLIFEDRKFADI 118
>pdb|2QCM|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To 6-Hydroxymethyl-Ump
pdb|2QCF|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To 5-Fluoro-Ump
Length = 260
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 94 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 151
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 152 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 181
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 182 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 241
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 242 AAEMYRKAAWEAYLSRL 258
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 19 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL N F+ I
Sbjct: 79 ITLAKXHEFLIFENRKFADI 98
>pdb|2QCD|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To Ump
pdb|2QCE|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
Sulfate, Glycerol, And Chloride
Length = 260
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 94 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 151
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 152 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 181
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 182 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 241
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 242 AAEMYRKAAWEAYLSRL 258
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 19 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 79 ITLAKXHEFLIFEDRKFADI 98
>pdb|2QCL|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To Omp
pdb|2QCL|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To Omp
pdb|3EWU|A Chain A, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Acetyl-Ump, Covalent
Adduct
pdb|3EWU|B Chain B, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Acetyl-Ump, Covalent
Adduct
pdb|3EWW|A Chain A, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Cyano-Ump, Covalent
Adduct
pdb|3EWW|B Chain B, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Cyano-Ump, Covalent
Adduct
pdb|3EX6|A Chain A, D312n Mutant Of Human Orotidyl-5'-monophosphate
Decarboxylase In Complex With 6-azido-ump, Covalent
Adduct
pdb|3EX6|B Chain B, D312n Mutant Of Human Orotidyl-5'-monophosphate
Decarboxylase In Complex With 6-azido-ump, Covalent
Adduct
Length = 260
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 94 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 151
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 152 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 181
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 182 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 241
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 242 AAEMYRKAAWEAYLSRL 258
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 19 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL N F+ I
Sbjct: 79 ITLAKCHEFLIFENRKFADI 98
>pdb|2QCC|A Chain A, Crystal Structure Of The Orotidine-5'-monophosphate
Decarboxylase Domain Of Human Ump Synthase, Apo Form
pdb|2QCC|B Chain B, Crystal Structure Of The Orotidine-5'-monophosphate
Decarboxylase Domain Of Human Ump Synthase, Apo Form
pdb|2QCD|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To Ump
pdb|2QCG|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Bromo-Ump
pdb|2QCG|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Bromo-Ump
pdb|2QCH|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Iodo-Ump
pdb|2QCH|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Iodo-Ump
pdb|2QCN|A Chain A, Covalent Complex Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase With
6-Iodo-Ump
pdb|2QCN|B Chain B, Covalent Complex Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase With
6-Iodo-Ump
pdb|3EWZ|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|C Chain C, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|D Chain D, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EX1|A Chain A, Human Orotidyl-5'-monophosphate Decarboxylase Soaked With
6-cyano-ump, Converted To Ump
pdb|3EX1|B Chain B, Human Orotidyl-5'-monophosphate Decarboxylase Soaked With
6-cyano-ump, Converted To Ump
pdb|3EX2|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Cyano- Ump
pdb|3EX2|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Cyano- Ump
pdb|3EX3|A Chain A, Human Orotidyl-5'-monophosphate Decarboxylase In Complex
With 6-azido- Ump, Covalent Adduct
pdb|3EX3|B Chain B, Human Orotidyl-5'-monophosphate Decarboxylase In Complex
With 6-azido- Ump, Covalent Adduct
pdb|3EX4|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With Bmp
pdb|3L0K|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Acetyl-Ump
pdb|3L0K|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Acetyl-Ump
pdb|3L0N|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Mercapto-Ump
pdb|3L0N|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Mercapto-Ump
Length = 260
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 94 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 151
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 152 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 181
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 182 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 241
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 242 AAEMYRKAAWEAYLSRL 258
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 19 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 79 ITLAKCHEFLIFEDRKFADI 98
>pdb|3BVJ|A Chain A, Crystal Structure Of Human Orotidine 5'-monophosphate
Decarboxylase Complexed With Xmp
pdb|3BVJ|B Chain B, Crystal Structure Of Human Orotidine 5'-monophosphate
Decarboxylase Complexed With Xmp
pdb|3G3D|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
5-Fluoro-6-Azido-Ump
pdb|3G3D|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
5-Fluoro-6-Azido-Ump
pdb|3MW7|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Fluoro-Ump(Produced From
5-Fluoro-6-Amino-Ump)
pdb|3MW7|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Fluoro-Ump(Produced From
5-Fluoro-6-Amino-Ump)
pdb|4HIB|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N4-Oh
pdb|4HIB|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N4-Oh
pdb|4HKP|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N3-Oxide
pdb|4HKP|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N3-Oxide
Length = 312
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 146 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 203
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 204 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 233
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 234 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 293
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 294 AAEMYRKAAWEAYLSRL 310
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 71 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 130
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 131 ITLAKCHEFLIFEDRKFADI 150
>pdb|3G3M|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 5-Fluoro-6-Iodo-Ump
pdb|3MI2|A Chain A, Crystal Structure Of Human Orotidine-5'-Monophosphate
Decarb Complexed With Pyrazofurin Monophosphate
pdb|3MI2|B Chain B, Crystal Structure Of Human Orotidine-5'-Monophosphate
Decarb Complexed With Pyrazofurin Monophosphate
Length = 279
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 113 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 170
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 171 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 200
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 201 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 260
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 261 AAEMYRKAAWEAYLSRL 277
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 38 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 97
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 98 ITLAKXHEFLIFEDRKFADI 117
>pdb|3BK0|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Cn-Ump
pdb|3BK0|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Cn-Ump
pdb|3DBP|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 6-Nh2-Ump
pdb|3DBP|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 6-Nh2-Ump
pdb|3MO7|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
2'-Fluoro-6-Iodo-Ump
Length = 279
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 95/197 (48%), Gaps = 36/197 (18%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170
K ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++
Sbjct: 113 KFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEM 170
Query: 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
S G+L YT+ +++A+ + G +
Sbjct: 171 SSTGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI-- 200
Query: 231 APSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVE 290
+ S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +E
Sbjct: 201 SGSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLE 260
Query: 291 AARRYKEVMWEAYEQRL 307
AA Y++ WEAY RL
Sbjct: 261 AAEMYRKAAWEAYLSRL 277
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 38 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 97
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 98 ITLAKCHEFLIFEDRKFADI 117
>pdb|3EWX|A Chain A, K314a Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Azido-Ump, Degraded To
Bmp
pdb|3EWY|A Chain A, K314a Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase Soaked With Omp, Decarboxylated To Ump
Length = 260
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 94/196 (47%), Gaps = 36/196 (18%)
Query: 116 LADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLS 171
ADIG V Q+ I WA LV H + G G ++ +Q + L RG LIA++S
Sbjct: 95 FADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLPL--HRGCLLIAEMS 152
Query: 172 CQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA 231
G+L YT+ +++A+ + G + +
Sbjct: 153 STGSLATGDYTRA----------------------------AVRMAEEHSEFVVGFI--S 182
Query: 232 PSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEA 291
S ++ P L LTPG+ L GDN GQQYN P +VI RG+D+ +VGRGI A D +EA
Sbjct: 183 GSRVSMKPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEA 242
Query: 292 ARRYKEVMWEAYEQRL 307
A Y++ WEAY RL
Sbjct: 243 AEMYRKAAWEAYLSRL 258
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH D + DF+ +V KEL
Sbjct: 19 VASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKEL 78
Query: 389 TALAKQHEFLRSRNGWFSPI 408
LAK HEFL + F+ I
Sbjct: 79 ITLAKXHEFLIFEDRAFADI 98
>pdb|3GDK|A Chain A, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae
pdb|3GDK|B Chain B, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae
pdb|3GDK|C Chain C, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae
pdb|3GDK|D Chain D, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae
pdb|3GDL|A Chain A, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae Complexed
With 6-Azauridine 5'-Monophosphate
pdb|3GDL|B Chain B, Crystal Structure Of The Orotidine 5'-Monophosphate
Decarboxylase From Saccharomyces Cerevisiae Complexed
With 6-Azauridine 5'-Monophosphate
Length = 267
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDEL-GEDRGVFLIAQ 169
K ADIG V Q+ I EWA + H + GPG + +++ ++E+ E RG+ ++A+
Sbjct: 93 KFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
LSC+G+L +YT + T+ +A+S + G +
Sbjct: 153 LSCKGSLATGEYT----------------------------KGTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLASNPGL--LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
Q + + G L +TPG+ L+ GD GQQY DV++ G+D+ +VGRG+ +
Sbjct: 185 Q-RDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
D RY++ WEAY +R ++N
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQN 267
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
++ R A +++ L +IM +K++NLC +LDV K+LL L LGP I +LKTH D +
Sbjct: 6 YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
DFS E K L AL+ ++ FL + F+ I ++ L++
Sbjct: 66 TDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQY 105
>pdb|3GDR|A Chain A, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDR|B Chain B, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDR|C Chain C, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDR|D Chain D, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDT|A Chain A, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae Complexed With 6-Azauridine 5'-Monophosphate
pdb|3GDT|B Chain B, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae Complexed With 6-Azauridine 5'-Monophosphate
pdb|3GDT|C Chain C, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae Complexed With 6-Azauridine 5'-Monophosphate
pdb|3GDT|D Chain D, Crystal Structure Of The D91n Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae Complexed With 6-Azauridine 5'-Monophosphate
Length = 267
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDEL-GEDRGVFLIAQ 169
K ADIG V Q+ I EWA + H + GPG + +++ ++E+ E RG+ ++A+
Sbjct: 93 KFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
LSC+G+L +YT + T+ +A+S + G +
Sbjct: 153 LSCKGSLATGEYT----------------------------KGTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLASNPGL--LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
Q + + G L +TPG+ L+ GD GQQY DV++ G+D+ +VGRG+ +
Sbjct: 185 Q-RDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
D RY++ WEAY +R ++N
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQN 267
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
++ R A +++ L +IM +K++NLC +LDV K+LL L LGP I +LKTH D +
Sbjct: 6 YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
DFS E K L AL+ ++ FL N F+ I ++ L++
Sbjct: 66 TDFSMEGTVKPLKALSAKYNFLLFENRKFADIGNTVKLQY 105
>pdb|3GDM|A Chain A, Crystal Structure Of The K93r Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
pdb|3GDM|B Chain B, Crystal Structure Of The K93r Mutant Of The Orotidine 5'-
Monophosphate Decarboxylase From Saccharomyces
Cerevisiae
Length = 267
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDEL-GEDRGVFLIAQ 169
+ ADIG V Q+ I EWA + H + GPG + +++ ++E+ E RG+ ++A+
Sbjct: 93 RFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
LSC+G+L +YT+ T+ +A+S + G +
Sbjct: 153 LSCKGSLATGEYTK----------------------------GTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLASNPGL--LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
Q + + G L +TPG+ L+ GD GQQY DV++ G+D+ +VGRG+ +
Sbjct: 185 Q-RDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
D RY++ WEAY +R ++N
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQN 267
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
++ R A +++ L +IM +K++NLC +LDV K+LL L LGP I +LKTH D +
Sbjct: 6 YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
DFS E K L AL+ ++ FL + F+ I ++ L++
Sbjct: 66 TDFSMEGTVKPLKALSAKYNFLLFEDRRFADIGNTVKLQY 105
>pdb|1DQW|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|C Chain C, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQW|D Chain D, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
pdb|1DQX|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|C Chain C, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
pdb|1DQX|D Chain D, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
Complexed To 6-Hydroxyuridine 5'-Phosphate (Bmp)
Length = 267
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 115 KLADIGAAVGHQFRL----IGEWAHLVTVHSIAGPGPLQEIQRISDEL-GEDRGVFLIAQ 169
K ADIG V Q+ I EWA + H + GPG + +++ ++E+ E RG+ ++A+
Sbjct: 93 KFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
LSC+G+L +YT + T+ +A+S + G +
Sbjct: 153 LSCKGSLSTGEYT----------------------------KGTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLASNPGL--LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
Q + + G L +TPG+ L+ GD GQQY DV++ G+D+ +VGRG+ +
Sbjct: 185 Q-RDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVST-GSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
D RY++ WEAY +R +++
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQD 267
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
++ R A +++ L +IM +K++NLC +LDV K+LL L LGP I +LKTH D +
Sbjct: 6 YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416
DFS E K L AL+ ++ FL + F+ I ++ L++
Sbjct: 66 TDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQY 105
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 58 ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVPHF 101
E NF K P E+ G YDFDS+MHY+R FS+ DTIVP +
Sbjct: 127 EYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKY 171
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 58 ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVPHF 101
E NF K P E+ G YDFDS+MHY+R FS+ DTIVP +
Sbjct: 126 EYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKY 170
>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1)
Protease Domain
Length = 201
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 58 ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGD-DTIVP 99
E NF K P E+ G YDFDS+MHY+R FS+ DTI+P
Sbjct: 126 EYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILP 168
>pdb|1DBT|A Chain A, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|B Chain B, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
pdb|1DBT|C Chain C, Crystal Structure Of Orotidine 5'-Monophosphate
Decarboxylase From Bacillus Subtilis Complexed With Ump
Length = 239
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 226 GLVC---QAPSVL-ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRG 281
G+VC +A ++ A +P L +TPGI +++ N + P + +G+ VVGR
Sbjct: 158 GVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPA-IAREKGSSAIVVGRS 216
Query: 282 ITQAPDPVEAARRYKEVMWE 301
IT+A DPV+A YK V E
Sbjct: 217 ITKAEDPVKA---YKAVRLE 233
>pdb|3TR2|A Chain A, Structure Of A Orotidine 5'-Phosphate Decarboxylase (Pyrf)
From Coxiella Burnetii
pdb|3TR2|B Chain B, Structure Of A Orotidine 5'-Phosphate Decarboxylase (Pyrf)
From Coxiella Burnetii
Length = 239
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 185 GFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIA------------GLVC--Q 230
++ITL+ K L +L D +TL + + P ++ G+VC Q
Sbjct: 107 ALQSITLKEKPLLIGVTILTSLDGSDLKTLGIQEKVPDIVCRXATLAKSAGLDGVVCSAQ 166
Query: 231 APSVLAS--NPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLR-GADLGVVGRGITQAPD 287
++L + L +TPGI L D KG Q T ++ G+D V+GR ITQ+ D
Sbjct: 167 EAALLRKQFDRNFLLVTPGIRLET--DEKGDQKRVXTPRAAIQAGSDYLVIGRPITQSTD 224
Query: 288 PVEA 291
P++A
Sbjct: 225 PLKA 228
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 58 ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVL 108
E NF Y V YD+ SVMHYS+ AF + TIV ++V+
Sbjct: 124 EHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVI 174
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 58 ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVL 108
E NF Y V YD+ SVMHYS+ AF + TIV ++V+
Sbjct: 163 EHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVI 213
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 177 IDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLA 236
I E++ Q GFK + L+ + ++L K D L FPGL+ + +
Sbjct: 25 IIERFEQKGFKLVALKFT--WASKELLEKHYAD----LSARPFFPGLV--------NYMN 70
Query: 237 SNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVI--TLRGADLGVVGRGITQAPDPVEAARR 294
S P + + G+++ +TG N P D + T+RG VGR I D VE+A +
Sbjct: 71 SGPVVPMVWEGLNVVKTGRQMLGATN-PADSLPGTIRGDFCIQVGRNIIHGSDAVESAEK 129
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 153
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 177 IDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLA 236
I E++ Q GFK + L+ + ++L K D L FPGL+ + +
Sbjct: 25 IIERFEQKGFKLVALKFT--WASKELLEKHYAD----LSARPFFPGLV--------NYMN 70
Query: 237 SNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVI--TLRGADLGVVGRGITQAPDPVEAARR 294
S P + + G+++ +TG N P D + T+RG VGR I D VE+A +
Sbjct: 71 SGPVVPMVWEGLNVVKTGRQMLGATN-PADSLPGTIRGDFCIQVGRNIIXGSDAVESAEK 129
>pdb|2GUU|A Chain A, Crystal Structure Of Plasmodium Vivax Orotidine
5-Monophosphate Decarboxylase With 6-Aza-Ump Bound
Length = 353
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 27/206 (13%)
Query: 110 SIIILKLADIGAAVGHQFRLIGEW--AHLVTVHSIAGPGPLQEIQRISDELGEDRGVF-L 166
+I+ +K+ DIG V H + I ++ + T + G L++I + +E F L
Sbjct: 164 TILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMGTQMLRDIC-LDEECKRYYSTFVL 222
Query: 167 IAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQS--FPGLI 224
+ + ++ + + G +A V+ + + + L L ++ F G +
Sbjct: 223 VKTTNADSHIFQNRLSLDGKEAYV-----------VIAEEAQKMAKQLHLEENGEFVGFV 271
Query: 225 AGLVC--QAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI 282
G C + + P L PG+ Q GD + NG + L VGR I
Sbjct: 272 VGANCYDEIKKIRELFPDCYILAPGVGA-QKGDLRKMLCNGYSKNYE---KVLINVGRAI 327
Query: 283 TQAPDPVEAARRY----KEVMWEAYE 304
T++ P +AAR Y KEV+ E E
Sbjct: 328 TKSGSPQQAAREYHQQIKEVLAELQE 353
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPV 289
+L +P LL L PG+H +Q + G + G T + G D G + + QA PV
Sbjct: 111 ILNIHPSLLPLFPGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPI---LAQAAVPV 163
>pdb|2CZ5|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3
pdb|2CZ5|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3
pdb|2CZD|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 At 1.6 A Resolution
pdb|2CZD|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 At 1.6 A Resolution
pdb|2CZE|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Ump
pdb|2CZE|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Ump
pdb|2CZF|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Xmp
pdb|2CZF|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Xmp
Length = 208
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 240 GLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARR-YKEV 298
G+ L PGI G Q D + GAD +VGR I AP+P EAA+ Y E+
Sbjct: 156 GIKILAPGI---------GAQGGKAKDAVKA-GADYIIVGRAIYNAPNPREAAKAIYDEI 205
>pdb|2FFC|A Chain A, Crystal Structure Of Plasmodium Vivax
Orotidine-Monophosphate- Decarboxyl Ump Bound
Length = 353
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 220 FPGLIAGLVC--QAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGV 277
F G + G C + + P L PG+ Q GD + NG + L
Sbjct: 267 FVGFVVGANCYDEIKKIRELFPDCYILAPGVGA-QKGDLRKMLCNGYSKNYE---KVLIN 322
Query: 278 VGRGITQAPDPVEAARRY----KEVMWEAYE 304
VGR IT++ P +AAR Y KEV+ E E
Sbjct: 323 VGRAITKSGSPQQAAREYHQQIKEVLAELQE 353
>pdb|3F4W|A Chain A, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
pdb|3F4W|B Chain B, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
Length = 211
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 269 TLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY 303
L G D+ +VG IT A DP AR+ +V+ + +
Sbjct: 177 ALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH 211
>pdb|3LQ0|A Chain A, Zymogen Structure Of Crayfish Astacin Metallopeptidase
Length = 235
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 13 FWEESGQFEGDIMLEG---PERTGVISSIDR--WPGGLIPY 48
+ G FEGDI L P R G D W GG+IPY
Sbjct: 11 LYYNDGMFEGDIKLRAGRQPARVGAAILGDEYLWSGGVIPY 51
>pdb|1YAD|A Chain A, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|B Chain B, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|C Chain C, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|D Chain D, Structure Of Teni From Bacillus Subtilis
pdb|3QH2|A Chain A, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|B Chain B, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|C Chain C, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|D Chain D, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
Length = 221
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVMWEA-YEQRL 307
GAD V GI + +P+EAARRY + E YE+ L
Sbjct: 185 GADGIAVMSGIFSSAEPLEAARRYSRKLKEMRYEKAL 221
>pdb|3EXR|A Chain A, Crystal Structure Of Kgpdc From Streptococcus Mutans
pdb|3EXR|B Chain B, Crystal Structure Of Kgpdc From Streptococcus Mutans
pdb|3EXR|C Chain C, Crystal Structure Of Kgpdc From Streptococcus Mutans
pdb|3EXR|D Chain D, Crystal Structure Of Kgpdc From Streptococcus Mutans
pdb|3EXS|A Chain A, Crystal Structure Of Kgpdc From Streptococcus Mutans In
Complex With D-R5p
pdb|3EXS|B Chain B, Crystal Structure Of Kgpdc From Streptococcus Mutans In
Complex With D-R5p
pdb|3EXS|C Chain C, Crystal Structure Of Kgpdc From Streptococcus Mutans In
Complex With D-R5p
pdb|3EXS|D Chain D, Crystal Structure Of Kgpdc From Streptococcus Mutans In
Complex With D-R5p
pdb|3EXT|A Chain A, Crystal Structure Of Kgpdc From Streptococcus Mutans
Length = 221
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 277 VVGRGITQAPDPVEAARRYKE 297
+ GRGIT+A +P AAR +K+
Sbjct: 194 IAGRGITEAKNPAGAARAFKD 214
>pdb|2YYT|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|C Chain C, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYT|D Chain D, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYU|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
pdb|2YYU|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Geobacillus Kaustophilus
Length = 246
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 226 GLVCQAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRG 281
G+VC A L +TPGI + + P L G+D V+GR
Sbjct: 159 GVVCSANEAAFIKERCGASFLAVTPGIRFADDAAHDQVRVVTPRKARAL-GSDYIVIGRS 217
Query: 282 ITQAPDPVEAARRYKEVMWEAYEQ 305
+T+A DP+ R + W E+
Sbjct: 218 LTRAADPLRTYARLQH-EWNGGER 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,532,440
Number of Sequences: 62578
Number of extensions: 583415
Number of successful extensions: 1508
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1428
Number of HSP's gapped (non-prelim): 77
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)