Query psy4093
Match_columns 434
No_of_seqs 411 out of 2447
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 16:42:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0284 PyrF Orotidine-5'-phos 100.0 5.3E-35 1.2E-39 283.0 15.1 162 111-301 66-235 (240)
2 cd04725 OMP_decarboxylase_like 100.0 1.9E-31 4.2E-36 254.7 11.6 188 78-295 23-216 (216)
3 TIGR01740 pyrF orotidine 5'-ph 100.0 2.9E-30 6.4E-35 245.8 11.7 181 80-296 25-213 (213)
4 PRK00230 orotidine 5'-phosphat 100.0 7.9E-29 1.7E-33 238.9 13.0 183 85-297 34-225 (230)
5 TIGR02127 pyrF_sub2 orotidine 99.9 1.6E-26 3.5E-31 226.7 10.2 189 77-294 52-259 (261)
6 PF00215 OMPdecase: Orotidine 99.9 3.6E-27 7.7E-32 226.2 4.3 187 78-295 25-226 (226)
7 PRK13305 sgbH 3-keto-L-gulonat 99.9 5E-26 1.1E-30 217.9 11.5 181 77-302 27-213 (218)
8 KOG1377|consensus 99.9 1.2E-25 2.6E-30 214.8 8.2 184 96-309 73-261 (261)
9 PRK13306 ulaD 3-keto-L-gulonat 99.9 5.6E-23 1.2E-27 196.7 10.1 181 77-302 27-213 (216)
10 PRK00125 pyrF orotidine 5'-pho 99.9 2.3E-21 5.1E-26 191.7 14.2 176 77-288 52-255 (278)
11 cd04282 ZnMc_meprin Zinc-depen 99.8 1.8E-22 4E-27 194.4 2.6 111 5-116 9-223 (230)
12 KOG1377|consensus 99.8 2.3E-22 5.1E-27 192.3 0.9 109 313-421 1-110 (261)
13 PRK05500 bifunctional orotidin 99.8 2.2E-18 4.7E-23 181.6 14.1 254 109-405 90-376 (477)
14 COG0284 PyrF Orotidine-5'-phos 99.7 2.8E-18 6E-23 166.6 7.2 86 333-422 3-88 (240)
15 PRK13813 orotidine 5'-phosphat 99.7 1.2E-16 2.5E-21 151.9 16.6 149 112-302 58-214 (215)
16 TIGR02127 pyrF_sub2 orotidine 99.7 2.7E-17 5.9E-22 161.7 8.3 89 330-418 2-108 (261)
17 KOG3714|consensus 99.7 9.5E-18 2.1E-22 174.6 2.5 109 10-118 42-264 (411)
18 cd04281 ZnMc_BMP1_TLD Zinc-dep 99.7 1.3E-17 2.7E-22 158.1 2.6 60 57-116 125-192 (200)
19 PRK13305 sgbH 3-keto-L-gulonat 99.6 1.5E-16 3.2E-21 152.7 6.5 75 341-417 3-77 (218)
20 cd04725 OMP_decarboxylase_like 99.6 2.4E-15 5.1E-20 143.9 6.2 72 344-419 1-72 (216)
21 TIGR01740 pyrF orotidine 5'-ph 99.5 6.7E-15 1.4E-19 140.4 5.9 71 344-418 1-71 (213)
22 PRK13306 ulaD 3-keto-L-gulonat 99.5 2.1E-14 4.6E-19 137.6 6.9 76 340-417 2-77 (216)
23 PF00215 OMPdecase: Orotidine 99.5 1.5E-14 3.1E-19 139.0 5.8 72 342-417 1-76 (226)
24 cd04280 ZnMc_astacin_like Zinc 99.5 8.9E-15 1.9E-19 136.4 2.4 109 2-116 24-175 (180)
25 cd04283 ZnMc_hatching_enzyme Z 99.4 2E-14 4.2E-19 134.5 0.6 107 2-116 26-175 (182)
26 PTZ00170 D-ribulose-5-phosphat 99.4 2E-12 4.4E-17 124.8 11.6 148 112-302 68-223 (228)
27 PRK00230 orotidine 5'-phosphat 99.4 5.5E-13 1.2E-17 128.9 6.4 73 341-417 2-74 (230)
28 PF01400 Astacin: Astacin (Pep 99.4 1.9E-13 4.2E-18 128.5 2.0 60 57-116 117-182 (191)
29 PRK00125 pyrF orotidine 5'-pho 99.3 1.4E-12 3E-17 129.4 7.4 83 330-418 3-108 (278)
30 PRK13813 orotidine 5'-phosphat 99.3 3.3E-12 7.1E-17 121.4 6.7 73 339-416 1-73 (215)
31 PRK13307 bifunctional formalde 99.3 9.3E-12 2E-16 128.8 9.7 168 81-297 201-376 (391)
32 PRK13307 bifunctional formalde 99.3 1.6E-11 3.5E-16 127.0 9.8 139 275-419 108-250 (391)
33 COG0269 SgbH 3-hexulose-6-phos 98.8 1.3E-08 2.8E-13 97.1 6.8 146 113-300 62-213 (217)
34 TIGR03128 RuMP_HxlA 3-hexulose 98.6 4.7E-08 1E-12 92.1 6.8 76 343-421 1-78 (206)
35 cd04726 KGPDC_HPS 3-Keto-L-gul 98.4 2.6E-07 5.7E-12 86.4 5.8 126 113-294 59-201 (202)
36 TIGR03128 RuMP_HxlA 3-hexulose 98.4 2.4E-06 5.2E-11 80.5 12.2 160 81-297 27-204 (206)
37 cd04327 ZnMc_MMP_like_3 Zinc-d 98.4 5.4E-08 1.2E-12 91.9 0.7 49 59-116 143-192 (198)
38 cd04726 KGPDC_HPS 3-Keto-L-gul 98.4 3.5E-07 7.7E-12 85.5 6.2 75 343-419 2-77 (202)
39 PRK07028 bifunctional hexulose 97.7 0.00023 4.9E-09 75.0 10.7 44 242-297 165-208 (430)
40 PLN02334 ribulose-phosphate 3- 97.4 0.0017 3.6E-08 62.7 12.2 47 242-301 177-223 (229)
41 PRK05500 bifunctional orotidin 97.4 0.00029 6.2E-09 75.3 6.5 83 330-414 4-105 (477)
42 cd00429 RPE Ribulose-5-phospha 97.0 0.003 6.5E-08 59.1 8.8 43 242-296 169-211 (211)
43 PRK07028 bifunctional hexulose 96.6 0.0048 1E-07 65.0 7.0 77 341-420 3-82 (430)
44 TIGR01163 rpe ribulose-phospha 96.1 0.0041 8.8E-08 58.3 3.1 42 242-295 168-209 (210)
45 COG0269 SgbH 3-hexulose-6-phos 96.1 0.013 2.9E-07 56.4 6.3 76 342-419 4-80 (217)
46 PRK05581 ribulose-phosphate 3- 95.9 0.0076 1.6E-07 57.1 4.0 43 243-297 174-216 (220)
47 PRK08745 ribulose-phosphate 3- 95.7 0.011 2.4E-07 57.3 4.2 44 242-297 174-217 (223)
48 PRK00278 trpC indole-3-glycero 95.5 0.096 2.1E-06 51.8 10.0 30 266-296 228-257 (260)
49 PRK08227 autoinducer 2 aldolas 95.4 0.08 1.7E-06 52.7 9.0 35 262-297 210-244 (264)
50 cd04268 ZnMc_MMP_like Zinc-dep 95.1 0.0066 1.4E-07 54.8 0.5 91 2-92 24-144 (165)
51 KOG3111|consensus 94.9 0.046 1E-06 51.9 5.4 40 263-303 182-221 (224)
52 PRK08883 ribulose-phosphate 3- 94.6 0.041 8.8E-07 53.2 4.3 43 243-297 171-213 (220)
53 PRK00043 thiE thiamine-phospha 94.5 0.037 8.1E-07 51.9 3.7 38 263-302 173-210 (212)
54 cd04728 ThiG Thiazole synthase 93.9 1.4 3.1E-05 43.5 13.5 38 262-300 185-225 (248)
55 cd00958 DhnA Class I fructose- 93.8 0.82 1.8E-05 43.9 11.7 33 264-297 200-232 (235)
56 PRK07695 transcriptional regul 93.2 0.092 2E-06 49.5 3.8 37 263-301 162-198 (201)
57 PRK00208 thiG thiazole synthas 93.1 2.3 5.1E-05 42.0 13.5 38 262-300 185-225 (250)
58 PRK04180 pyridoxal biosynthesi 93.0 0.13 2.8E-06 51.7 4.7 38 265-304 221-258 (293)
59 TIGR00343 pyridoxal 5'-phospha 92.2 0.18 3.8E-06 50.7 4.5 37 265-303 215-251 (287)
60 cd00564 TMP_TenI Thiamine mono 91.8 0.14 3.1E-06 46.7 3.2 43 242-296 153-195 (196)
61 PRK06852 aldolase; Validated 90.7 1.3 2.7E-05 45.2 8.8 35 262-297 248-285 (304)
62 TIGR00693 thiE thiamine-phosph 90.5 0.19 4.2E-06 46.7 2.7 31 263-294 165-195 (196)
63 COG0214 SNZ1 Pyridoxine biosyn 90.2 0.41 8.9E-06 46.9 4.6 37 261-297 217-255 (296)
64 PRK08091 ribulose-phosphate 3- 89.0 0.51 1.1E-05 46.1 4.4 44 242-297 182-225 (228)
65 COG1830 FbaB DhnA-type fructos 88.9 0.98 2.1E-05 45.0 6.2 34 263-297 222-255 (265)
66 PRK09517 multifunctional thiam 88.7 2.5 5.5E-05 48.0 10.2 134 263-403 179-344 (755)
67 PRK09722 allulose-6-phosphate 88.2 0.79 1.7E-05 44.8 5.1 44 242-297 172-217 (229)
68 PRK08005 epimerase; Validated 87.4 0.62 1.3E-05 44.9 3.8 42 242-295 166-207 (210)
69 PRK14057 epimerase; Provisiona 86.7 0.91 2E-05 45.1 4.6 44 242-297 196-239 (254)
70 cd00739 DHPS DHPS subgroup of 86.3 6.4 0.00014 39.0 10.3 48 344-401 77-125 (257)
71 COG0352 ThiE Thiamine monophos 85.9 0.87 1.9E-05 44.0 3.9 34 263-297 171-204 (211)
72 cd04727 pdxS PdxS is a subunit 85.0 1.1 2.3E-05 45.2 4.1 36 265-302 212-247 (283)
73 PRK04302 triosephosphate isome 84.1 3.3 7.1E-05 39.8 7.0 36 262-297 183-220 (223)
74 PRK07226 fructose-bisphosphate 83.6 1.6 3.4E-05 43.3 4.7 50 242-297 199-249 (267)
75 TIGR00262 trpA tryptophan synt 83.3 9.7 0.00021 37.7 10.1 21 263-284 212-232 (256)
76 TIGR01949 AroFGH_arch predicte 82.6 1.2 2.7E-05 43.7 3.5 35 262-297 211-245 (258)
77 KOG1606|consensus 81.0 2.5 5.5E-05 41.0 4.8 37 261-297 218-256 (296)
78 cd00331 IGPS Indole-3-glycerol 80.4 1.2 2.6E-05 42.2 2.5 30 264-294 187-216 (217)
79 PRK06512 thiamine-phosphate py 78.4 2 4.4E-05 41.5 3.3 35 265-301 179-213 (221)
80 cd02803 OYE_like_FMN_family Ol 78.0 12 0.00025 37.7 8.8 27 264-291 296-323 (327)
81 PRK13957 indole-3-glycerol-pho 76.9 27 0.00058 34.7 10.7 120 129-295 120-246 (247)
82 smart00235 ZnMc Zinc-dependent 76.9 1.1 2.4E-05 39.4 0.9 46 2-50 32-80 (140)
83 COG0036 Rpe Pentose-5-phosphat 76.5 3.3 7.1E-05 40.3 4.1 44 242-297 172-215 (220)
84 PRK02615 thiamine-phosphate py 75.5 3 6.6E-05 43.2 3.8 34 263-297 307-340 (347)
85 KOG0538|consensus 72.2 9.3 0.0002 39.1 6.2 78 214-304 237-337 (363)
86 PRK13125 trpA tryptophan synth 71.6 40 0.00086 32.8 10.5 21 263-284 199-219 (244)
87 PRK09250 fructose-bisphosphate 71.5 7.8 0.00017 40.2 5.6 29 262-291 299-330 (348)
88 PLN02898 HMP-P kinase/thiamin- 70.9 5.2 0.00011 43.1 4.5 38 263-302 457-497 (502)
89 PRK03170 dihydrodipicolinate s 70.5 69 0.0015 31.8 12.1 109 243-367 72-181 (292)
90 PTZ00170 D-ribulose-5-phosphat 69.2 4.2 9.1E-05 39.4 3.0 62 345-416 13-81 (228)
91 PRK12290 thiE thiamine-phospha 68.7 4.1 8.9E-05 43.5 3.0 42 263-306 377-418 (437)
92 TIGR01496 DHPS dihydropteroate 68.4 46 0.00099 32.9 10.2 49 343-401 75-123 (257)
93 PRK13802 bifunctional indole-3 67.5 46 0.001 37.8 11.1 123 129-297 129-258 (695)
94 cd01840 SGNH_hydrolase_yrhL_li 67.0 32 0.00069 30.4 8.1 62 342-403 52-116 (150)
95 PRK03620 5-dehydro-4-deoxygluc 64.9 66 0.0014 32.4 10.8 111 243-374 78-190 (303)
96 PRK09427 bifunctional indole-3 64.6 1.5E+02 0.0032 32.0 13.8 113 263-389 221-348 (454)
97 PF00218 IGPS: Indole-3-glycer 64.6 34 0.00075 34.0 8.4 121 129-295 127-254 (254)
98 TIGR03326 rubisco_III ribulose 64.6 1.5E+02 0.0032 31.7 13.6 43 262-305 347-391 (412)
99 PRK11613 folP dihydropteroate 64.2 67 0.0015 32.4 10.5 27 344-380 91-117 (282)
100 CHL00200 trpA tryptophan synth 63.0 82 0.0018 31.4 10.8 33 126-159 111-144 (263)
101 TIGR03849 arch_ComA phosphosul 61.3 13 0.00029 36.6 4.8 58 352-409 10-67 (237)
102 TIGR02313 HpaI-NOT-DapA 2,4-di 61.2 74 0.0016 31.9 10.3 110 242-367 70-182 (294)
103 PRK03512 thiamine-phosphate py 59.5 11 0.00023 36.2 3.8 34 263-297 171-204 (211)
104 PF01884 PcrB: PcrB family; I 58.8 3.6 7.8E-05 40.3 0.4 49 236-295 179-227 (230)
105 PRK09140 2-dehydro-3-deoxy-6-p 57.9 12 0.00025 35.9 3.7 34 263-297 164-201 (206)
106 PRK06843 inosine 5-monophospha 57.7 1.1E+02 0.0024 32.5 11.2 26 264-290 271-297 (404)
107 PRK13835 conjugal transfer pro 57.4 12 0.00025 34.3 3.4 57 354-415 45-101 (145)
108 cd00408 DHDPS-like Dihydrodipi 56.9 1.1E+02 0.0023 30.1 10.5 111 242-369 67-179 (281)
109 cd04731 HisF The cyclase subun 56.6 18 0.00039 34.8 4.9 32 265-297 209-241 (243)
110 PF05690 ThiG: Thiazole biosyn 56.5 13 0.00028 36.7 3.8 50 242-303 178-227 (247)
111 CHL00162 thiG thiamin biosynth 56.5 21 0.00045 35.7 5.2 39 264-304 204-242 (267)
112 cd00950 DHDPS Dihydrodipicolin 56.4 2E+02 0.0043 28.3 12.3 112 242-370 70-183 (284)
113 TIGR00674 dapA dihydrodipicoli 56.0 1.8E+02 0.0039 28.8 12.0 109 242-367 68-178 (285)
114 PRK11840 bifunctional sulfur c 55.0 23 0.00049 36.6 5.4 38 265-304 265-302 (326)
115 cd04736 MDH_FMN Mandelate dehy 54.5 21 0.00045 37.3 5.1 63 223-297 257-338 (361)
116 PLN02979 glycolate oxidase 54.3 20 0.00043 37.5 4.9 79 214-306 237-335 (366)
117 PRK04208 rbcL ribulose bisopho 54.0 2.5E+02 0.0054 30.5 13.2 44 262-306 378-423 (468)
118 PLN02274 inosine-5'-monophosph 52.5 1.6E+02 0.0035 32.1 11.7 77 344-424 291-378 (505)
119 cd00951 KDGDH 5-dehydro-4-deox 51.8 1.4E+02 0.003 29.7 10.5 92 261-367 84-177 (289)
120 CHL00040 rbcL ribulose-1,5-bis 51.7 2.7E+02 0.0058 30.3 13.1 43 262-305 385-429 (475)
121 cd08212 RuBisCO_large_I Ribulo 51.1 2.6E+02 0.0057 30.2 12.8 42 263-305 363-406 (450)
122 TIGR03249 KdgD 5-dehydro-4-deo 51.0 1.5E+02 0.0032 29.6 10.5 109 242-369 75-184 (296)
123 cd00423 Pterin_binding Pterin 50.7 47 0.001 32.6 6.8 15 270-284 35-49 (258)
124 PF00834 Ribul_P_3_epim: Ribul 50.5 11 0.00023 36.1 2.2 32 242-285 169-200 (201)
125 COG2022 ThiG Uncharacterized e 48.9 27 0.00059 34.5 4.6 46 242-298 185-230 (262)
126 PLN02493 probable peroxisomal 48.8 27 0.00058 36.6 4.9 58 214-284 238-313 (367)
127 cd08206 RuBisCO_large_I_II_III 48.5 3.1E+02 0.0068 29.3 12.8 44 262-306 349-394 (414)
128 PRK12858 tagatose 1,6-diphosph 47.4 79 0.0017 32.8 8.0 28 261-289 257-286 (340)
129 PLN02535 glycolate oxidase 46.9 35 0.00077 35.7 5.4 59 214-285 237-313 (364)
130 PF00701 DHDPS: Dihydrodipicol 46.3 1.8E+02 0.004 28.6 10.3 130 223-370 35-184 (289)
131 COG3010 NanE Putative N-acetyl 46.1 35 0.00076 33.2 4.8 52 237-297 166-224 (229)
132 cd00945 Aldolase_Class_I Class 46.1 24 0.00052 31.9 3.7 60 223-285 26-91 (201)
133 PRK01130 N-acetylmannosamine-6 45.7 17 0.00037 34.6 2.7 30 263-293 187-216 (221)
134 cd02930 DCR_FMN 2,4-dienoyl-Co 45.1 2.6E+02 0.0056 28.7 11.5 43 343-389 278-320 (353)
135 cd02809 alpha_hydroxyacid_oxid 45.0 2.7E+02 0.0058 27.9 11.3 22 263-285 241-262 (299)
136 COG0541 Ffh Signal recognition 44.9 1.5E+02 0.0034 31.9 9.8 106 279-397 61-183 (451)
137 cd03332 LMO_FMN L-Lactate 2-mo 44.4 33 0.00071 36.2 4.8 64 223-297 274-357 (383)
138 COG1850 RbcL Ribulose 1,5-bisp 43.9 58 0.0013 34.5 6.3 123 277-407 152-285 (429)
139 KOG1144|consensus 43.1 1E+02 0.0022 35.6 8.4 121 263-392 781-924 (1064)
140 PRK06843 inosine 5-monophospha 43.0 1.1E+02 0.0023 32.7 8.3 77 344-424 196-283 (404)
141 COG0623 FabI Enoyl-[acyl-carri 42.9 45 0.00099 33.1 5.1 63 299-368 21-83 (259)
142 PF02679 ComA: (2R)-phospho-3- 42.3 17 0.00038 35.9 2.2 59 351-409 22-80 (244)
143 PLN02417 dihydrodipicolinate s 41.9 80 0.0017 31.4 6.9 45 240-289 69-113 (280)
144 PRK08255 salicylyl-CoA 5-hydro 41.4 1.3E+02 0.0027 34.5 9.2 24 264-287 702-725 (765)
145 TIGR02708 L_lactate_ox L-lacta 41.3 44 0.00095 35.0 5.1 72 213-297 241-332 (367)
146 PRK06552 keto-hydroxyglutarate 41.0 28 0.00061 33.5 3.4 34 263-297 168-207 (213)
147 PRK10605 N-ethylmaleimide redu 39.2 2.4E+02 0.0051 29.3 10.1 26 263-289 305-331 (362)
148 PRK04147 N-acetylneuraminate l 38.2 4.1E+02 0.009 26.4 12.2 43 241-288 73-115 (293)
149 COG1646 Predicted phosphate-bi 38.1 48 0.001 32.7 4.5 33 241-286 193-227 (240)
150 cd00203 ZnMc Zinc-dependent me 36.7 15 0.00032 32.8 0.7 20 71-90 129-148 (167)
151 TIGR00683 nanA N-acetylneurami 36.6 1E+02 0.0022 30.9 6.7 107 242-365 71-180 (290)
152 PF07905 PucR: Purine cataboli 36.5 36 0.00077 29.6 3.1 58 354-416 59-122 (123)
153 cd04729 NanE N-acetylmannosami 36.5 21 0.00045 33.9 1.7 27 263-290 191-217 (219)
154 cd02931 ER_like_FMN Enoate red 35.3 2.2E+02 0.0048 29.7 9.2 25 264-289 320-345 (382)
155 PRK14024 phosphoribosyl isomer 35.1 76 0.0016 30.8 5.4 34 262-295 200-238 (241)
156 cd04735 OYE_like_4_FMN Old yel 34.7 85 0.0018 32.3 6.0 28 264-292 299-326 (353)
157 PRK08649 inosine 5-monophospha 34.4 2.8E+02 0.006 29.1 9.7 27 263-290 270-297 (368)
158 PTZ00314 inosine-5'-monophosph 34.3 2.1E+02 0.0045 31.2 9.1 112 120-286 240-380 (495)
159 PF04476 DUF556: Protein of un 34.0 2.8E+02 0.0061 27.4 9.0 61 352-412 132-198 (235)
160 PF01070 FMN_dh: FMN-dependent 33.6 54 0.0012 34.1 4.4 79 213-305 238-336 (356)
161 TIGR00735 hisF imidazoleglycer 32.7 2E+02 0.0043 28.1 7.9 34 242-286 77-110 (254)
162 PRK04169 geranylgeranylglycery 32.6 43 0.00093 32.9 3.2 44 241-297 186-229 (232)
163 PRK05848 nicotinate-nucleotide 32.6 32 0.0007 34.5 2.4 33 242-286 232-264 (273)
164 COG2984 ABC-type uncharacteriz 30.7 1.5E+02 0.0032 30.7 6.7 76 348-427 140-219 (322)
165 PRK13753 dihydropteroate synth 29.8 3.1E+02 0.0067 27.7 8.8 25 260-284 20-50 (279)
166 cd08212 RuBisCO_large_I Ribulo 29.6 2.1E+02 0.0046 30.9 8.0 120 277-407 142-276 (450)
167 PRK13883 conjugal transfer pro 29.2 79 0.0017 29.1 4.1 47 354-404 39-85 (151)
168 PLN02460 indole-3-glycerol-pho 29.1 71 0.0015 33.2 4.3 35 262-296 298-334 (338)
169 cd00952 CHBPH_aldolase Trans-o 28.1 5.1E+02 0.011 26.1 10.2 98 261-370 93-191 (309)
170 TIGR01037 pyrD_sub1_fam dihydr 28.0 68 0.0015 31.9 3.9 43 262-308 244-288 (300)
171 PRK07807 inosine 5-monophospha 27.8 2.9E+02 0.0062 30.0 8.8 78 343-424 269-357 (479)
172 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.7 5.6E+02 0.012 25.3 10.3 33 265-297 27-66 (275)
173 cd04737 LOX_like_FMN L-Lactate 27.7 99 0.0021 32.2 5.1 33 242-285 279-311 (351)
174 PF00809 Pterin_bind: Pterin b 27.2 1.9E+02 0.004 27.5 6.5 20 343-362 72-91 (210)
175 cd00954 NAL N-Acetylneuraminic 27.0 1.9E+02 0.0042 28.6 6.9 26 263-289 88-113 (288)
176 CHL00040 rbcL ribulose-1,5-bis 26.8 2.8E+02 0.0061 30.2 8.4 120 277-406 164-298 (475)
177 PRK05718 keto-hydroxyglutarate 26.8 2.2E+02 0.0048 27.4 7.0 79 341-426 14-94 (212)
178 PRK05286 dihydroorotate dehydr 26.4 43 0.00093 34.5 2.1 40 263-306 300-342 (344)
179 cd04740 DHOD_1B_like Dihydroor 26.4 99 0.0021 30.7 4.7 40 263-307 245-284 (296)
180 TIGR00284 dihydropteroate synt 26.1 8.7E+02 0.019 26.6 12.1 60 343-406 230-290 (499)
181 KOG0618|consensus 26.0 62 0.0013 38.0 3.4 60 224-298 681-754 (1081)
182 smart00235 ZnMc Zinc-dependent 25.8 41 0.00088 29.4 1.6 14 38-51 2-15 (140)
183 PRK02227 hypothetical protein; 25.8 4.9E+02 0.011 25.8 9.2 60 352-411 132-197 (238)
184 TIGR01302 IMP_dehydrog inosine 25.6 5.5E+02 0.012 27.5 10.4 77 344-424 267-354 (450)
185 cd04278 ZnMc_MMP Zinc-dependen 25.5 41 0.00089 30.1 1.6 14 40-53 1-14 (157)
186 COG3033 TnaA Tryptophanase [Am 25.4 1.6E+02 0.0034 31.3 5.9 52 352-403 170-226 (471)
187 TIGR01302 IMP_dehydrog inosine 25.0 4.8E+02 0.011 27.8 9.8 24 263-287 341-364 (450)
188 COG0134 TrpC Indole-3-glycerol 25.0 1.4E+02 0.0029 29.9 5.2 30 266-296 224-253 (254)
189 PRK06242 flavodoxin; Provision 24.7 2E+02 0.0044 25.0 5.9 18 271-288 42-59 (150)
190 cd02801 DUS_like_FMN Dihydrour 24.3 1.3E+02 0.0028 28.3 4.8 23 264-287 198-221 (231)
191 KOG1367|consensus 24.0 1.1E+02 0.0024 31.8 4.4 34 369-402 248-281 (416)
192 KOG2978|consensus 23.9 1.5E+02 0.0033 28.7 5.0 101 311-418 5-112 (238)
193 PF03841 SelA: L-seryl-tRNA se 23.5 39 0.00085 35.4 1.2 72 332-404 103-178 (367)
194 cd01832 SGNH_hydrolase_like_1 22.5 4.7E+02 0.01 23.1 8.0 64 339-403 66-151 (185)
195 KOG3843|consensus 22.5 1.2E+02 0.0026 30.9 4.3 55 351-417 141-197 (432)
196 TIGR00735 hisF imidazoleglycer 22.5 1.5E+02 0.0032 29.0 4.9 32 265-297 215-247 (254)
197 PRK07259 dihydroorotate dehydr 22.1 99 0.0021 30.8 3.8 42 262-308 244-288 (301)
198 cd00381 IMPDH IMPDH: The catal 21.7 7.6E+02 0.017 25.2 10.2 24 263-287 211-234 (325)
199 cd02932 OYE_YqiM_FMN Old yello 21.7 4.6E+02 0.0099 26.6 8.6 24 265-289 306-330 (336)
200 cd00953 KDG_aldolase KDG (2-ke 21.0 1.6E+02 0.0035 29.2 4.9 40 244-288 68-108 (279)
201 PRK11197 lldD L-lactate dehydr 20.9 1.2E+02 0.0027 31.9 4.3 23 262-285 313-335 (381)
202 cd00429 RPE Ribulose-5-phospha 20.9 2.2E+02 0.0048 26.1 5.6 74 343-419 4-80 (211)
203 PRK05958 8-amino-7-oxononanoat 20.9 2.1E+02 0.0046 28.6 5.9 24 384-407 186-209 (385)
204 PF04131 NanE: Putative N-acet 20.9 87 0.0019 30.0 2.8 133 119-297 50-188 (192)
205 PRK13585 1-(5-phosphoribosyl)- 20.7 79 0.0017 30.2 2.6 30 265-295 209-238 (241)
206 cd08213 RuBisCO_large_III Ribu 20.2 3.2E+02 0.007 29.2 7.2 121 277-407 128-262 (412)
207 PF00016 RuBisCO_large: Ribulo 20.1 82 0.0018 32.3 2.7 133 279-425 13-157 (309)
208 cd00465 URO-D_CIMS_like The UR 20.1 6.9E+02 0.015 24.4 9.3 114 265-393 151-272 (306)
209 COG4981 Enoyl reductase domain 20.1 4.1E+02 0.0089 29.7 7.9 65 330-401 110-181 (717)
No 1
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.3e-35 Score=282.95 Aligned_cols=162 Identities=34% Similarity=0.451 Sum_probs=137.1
Q ss_pred HhhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhh
Q psy4093 111 IIILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAI 189 (434)
Q Consensus 111 i~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~ 189 (434)
++|+|+||||||++.+++...+ ++|++|||+++|.+||++++++..+.+ +.+++||+|||.+ +.++.++||..+
T Consensus 66 flDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~--~~vl~vT~lts~~---~~~~~~~~~~~~ 140 (240)
T COG0284 66 FLDLKLADIPNTVALAAKAAADLGADAVTVHAFGGFDMLRAAKEALEAGG--PFVLAVTSLTSMG---ELQLAELGINSS 140 (240)
T ss_pred EEeeecccchHHHHHHHHHhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcC--ceEEEEEeCCCch---hhhhhhccccch
Confidence 3499999999999999998888 599999999999999999999997765 3688888888853 333444444443
Q ss_pred HHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh----hcCCCceEecCcccccCCCCCCCCc--cC
Q psy4093 190 TLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQ--YN 262 (434)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ--~~ 262 (434)
. .+.++++|+++.. |++|+|||++|+. .++++|++||||||+ +++.||| ++
T Consensus 141 ~-------------------~~~v~~~a~~~~~~G~dgvv~~~~e~~~ir~~~g~~~~iltPGIg~---~~~~gdQ~~~~ 198 (240)
T COG0284 141 L-------------------EEQVLRLAKLAGEAGLDGVVCSAEEVAAIREILGPDFLILTPGIGA---GSQGGDQGRVM 198 (240)
T ss_pred H-------------------HHHHHHHHHHhccCCceEEEcCHHHHHHHHHhcCCCcEEECCCcCc---CcCCCCccccc
Confidence 2 3688999999887 8999999999886 678999999999998 4556677 67
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE 301 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~ 301 (434)
||.+|+ .+||||||||||||+|+||+++++++.+ +|.
T Consensus 199 t~~~A~-~~Gad~ivVGR~I~~a~~p~~a~~~i~~-~~~ 235 (240)
T COG0284 199 TPGEAV-RAGADYIVVGRPITQAGDPVAAARAIAR-EIA 235 (240)
T ss_pred CHHHHH-hcCCCEEEEChhhhcCCChHHHHHHHHH-HHH
Confidence 999999 8999999999999999999999999997 443
No 2
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=99.97 E-value=1.9e-31 Score=254.65 Aligned_cols=188 Identities=32% Similarity=0.450 Sum_probs=143.9
Q ss_pred cceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHh
Q psy4093 78 FDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRIS 155 (434)
Q Consensus 78 y~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~ 155 (434)
|-.+.+-|...|...|..++......+ +.++ |+|++|||||+..+++.+.+ ++|++|||+++|.+||+++++++
T Consensus 23 ~v~~iKvg~~l~~~~g~~~i~~l~~~~----~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~ 98 (216)
T cd04725 23 YVCAVKVGLELFEAAGPEIVKELRELG----FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGGSDMLKAALEAA 98 (216)
T ss_pred cccEEEECHHHHHhcCHHHHHHHHHCC----CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHH
Confidence 345666667777777766665544443 3345 99999999999999887666 79999999999999999999998
Q ss_pred hhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh
Q psy4093 156 DELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL 235 (434)
Q Consensus 156 ~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~ 235 (434)
.+.+ +++++|++|||+++. ++++ ++.... +..++.+.++|+++ +++|+|||+.+..
T Consensus 99 ~~~~--~~~~~v~~lss~~~~---~~q~-~~~~~~----------------~~~~~~~~~~a~~~--g~~G~V~~~~~~~ 154 (216)
T cd04725 99 EEKG--KGLFAVTVLSSPGAL---DLQE-GIPGSL----------------EDLVERLAKLAREA--GVDGVVCGATEPE 154 (216)
T ss_pred hccC--CeEEEEEcCCCCCHH---HHHh-hhcCCH----------------HHHHHHHHHHHHHH--CCCEEEECCcchH
Confidence 7554 689999999996433 3322 222111 11123444455444 6999999998874
Q ss_pred ----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093 236 ----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRY 295 (434)
Q Consensus 236 ----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i 295 (434)
..+++|++||||||++..++ .|+|++||.+|+ +.|+|++||||+|++|+||.+++++|
T Consensus 155 ~i~~~~~~~~~~ltPGI~~~~~~~-dq~r~~~~~~a~-~~g~~~ivvGR~I~~a~~p~~~~~~i 216 (216)
T cd04725 155 ALRRALGPDFLILTPGIGAQGSGD-DQKRGGTPEDAI-RAGADYIVVGRPITQAADPVAAAEAI 216 (216)
T ss_pred HHHHhhCCCCeEEcCCcCCCCCcc-ccccccCHHHHH-HcCCcEEEEChhhccCCCHHHHHhcC
Confidence 57789999999999985455 566699999999 99999999999999999999999875
No 3
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=99.96 E-value=2.9e-30 Score=245.81 Aligned_cols=181 Identities=31% Similarity=0.440 Sum_probs=141.2
Q ss_pred eecccchhhhccCCCccccccchhchhhhHHHhhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhh
Q psy4093 80 SVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDEL 158 (434)
Q Consensus 80 SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~ 158 (434)
.+..-|...|...|...+......+. ..++|+|++|||||+..+++.+.+ ++|++|||+++|.+|++++++.+.+.
T Consensus 25 ~~iKig~~l~~~~G~~~v~~l~~~~~---~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~ 101 (213)
T TIGR01740 25 EVIKVGIDLLLDGGDKIIDELAKLNK---LIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEG 101 (213)
T ss_pred cEEEECHHHHHhcCHHHHHHHHHcCC---CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcC
Confidence 34444455555555444433333221 223499999999999999997666 79999999999999999999988765
Q ss_pred CCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh--
Q psy4093 159 GEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL-- 235 (434)
Q Consensus 159 ~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~-- 235 (434)
+ +++++|++|||+++.+ +.. . ..+.++++|+++.+ |++|+||++.|+.
T Consensus 102 ~--~~v~~v~~lss~~~~~---~~~-----~-------------------~~~~v~~~a~~~~~~g~~g~v~~~~~~~~i 152 (213)
T TIGR01740 102 G--RGLLAVTELTSMGSLD---YGE-----D-------------------TMEKVLEYAKEAKAFGLDGPVCSAEEAKEI 152 (213)
T ss_pred C--CeEEEEEcCCCCChhh---hCc-----C-------------------HHHHHHHHHHHhhhcCCeEEEeCHHHHHHH
Confidence 5 6899999999976443 211 0 12588999999887 7999999998875
Q ss_pred --hcCCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093 236 --ASNPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYK 296 (434)
Q Consensus 236 --~~~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~ 296 (434)
..+ +|++||||||++ +++.+|| ++||.+++ ++|||++||||+|++++||.+++++|+
T Consensus 153 r~~~~-~~~~vtPGI~~~--g~~~~dq~~~~~~~~~~-~~Gad~iVvGr~I~~~~d~~~~~~~~~ 213 (213)
T TIGR01740 153 RKFTG-DFLILTPGIRLQ--SKGADDQQRVVTLEDAK-EAGADVIIVGRGIYAAEDPVEAAKRIR 213 (213)
T ss_pred HHhcC-CceEEeCCcCCC--CCCcCCccccCCHHHHH-HcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence 445 799999999998 5555556 78999999 999999999999999999999988764
No 4
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.96 E-value=7.9e-29 Score=238.90 Aligned_cols=183 Identities=27% Similarity=0.396 Sum_probs=141.4
Q ss_pred chhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCC
Q psy4093 85 SRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDR 162 (434)
Q Consensus 85 g~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~ 162 (434)
+...|...|..++...... +..++ |+|++|||+|+..+++.+.+ ++|++|||+.+|.+|++++++++.+.+ ..
T Consensus 34 g~~~f~~~G~~~i~~l~~~----~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~-~~ 108 (230)
T PRK00230 34 GMELFTAGGPQFVRELKQR----GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASGGPRMMKAAREALEPKS-RP 108 (230)
T ss_pred cHHHHHhcCHHHHHHHHhc----CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccC-CC
Confidence 3455555555555433221 23345 99999999999999998878 499999999999999999999876432 13
Q ss_pred ceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCccchh----hc
Q psy4093 163 GVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAPSVL----AS 237 (434)
Q Consensus 163 ~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~e~~----~~ 237 (434)
.+++|++|||. +.+++.+.|+.... .+.++++++.+.+ |++|+||++.+.. .+
T Consensus 109 ~~~~V~~lts~---~~~~l~~~~~~~~~-------------------~~~v~~~a~~a~~~g~dgvv~~~~~~~~ir~~~ 166 (230)
T PRK00230 109 LLIAVTVLTSM---DEEDLAELGINLSL-------------------EEQVLRLAKLAQEAGLDGVVCSAQEAAAIREAT 166 (230)
T ss_pred eEEEEEECCCC---CHHHHHhCcCCCCH-------------------HHHHHHHHHHHHHcCCeEEEeChHHHHHHHhhc
Confidence 58888999884 34455443332211 2466777777666 7999999998874 45
Q ss_pred CCCceEecCcccccCCCCCCCCc--cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 238 NPGLLQLTPGIHLNQTGDNKGQQ--YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 238 ~~~~l~vtPGIr~~~~~~~~~dQ--~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+++|+.||||||++ |+..+|| +.||.+|+ ++|||++||||+||+|+||.+++++|++
T Consensus 167 ~~~~~~v~pGI~~~--g~~~~dq~~~~~~~~ai-~~Gad~iVvGR~I~~a~dP~~~a~~i~~ 225 (230)
T PRK00230 167 GPDFLLVTPGIRPA--GSDAGDQKRVMTPAQAI-AAGSDYIVVGRPITQAADPAAAYEAILA 225 (230)
T ss_pred CCceEEEcCCcCCC--CCCcchHHHHhCHHHHH-HcCCCEEEECCcccCCCCHHHHHHHHHH
Confidence 78999999999986 6666888 57999999 9999999999999999999999999998
No 5
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=99.93 E-value=1.6e-26 Score=226.74 Aligned_cols=189 Identities=19% Similarity=0.226 Sum_probs=132.7
Q ss_pred ccceecccchhhhccCCCccccccc---hhchhhhHHHh-hhcccCHHHHHHHHHHHhc-c-ccceEEEcccCCchhHHH
Q psy4093 77 DFDSVMHYSRKAFSKNGDDTIVPHF---VMAQNVLWSII-ILKLADIGAAVGHQFRLIG-E-WAHLVTVHSIAGPGPLQE 150 (434)
Q Consensus 77 Dy~SVMhYg~~aFs~~g~~Ti~~~~---~igqr~~~si~-dlKl~DI~nTv~~~~~~~~-~-~~d~vTvH~~~G~~ml~~ 150 (434)
+|-...+-+...|...|...+.... ..-.+.++.++ |+|++|||||+..+++.+. . ++|++|||+++|.+||++
T Consensus 52 ~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~~~G~d~l~~ 131 (261)
T TIGR02127 52 EYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSPYLGLDSLRP 131 (261)
T ss_pred CcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHH
Confidence 4455666667777777654442211 11112234445 9999999999999999877 4 599999999999999999
Q ss_pred HHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-----CCc
Q psy4093 151 IQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-----LIA 225 (434)
Q Consensus 151 a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-----gv~ 225 (434)
+++.+.+.+ +.+++++.||+|++ .+++++++... ...++.|+++|+++.+ |++
T Consensus 132 ~~~~~~~~~--~~v~VlvlTSnp~~---~~lq~~~~~~~-----------------~~~~~~V~~~a~~~~~~~~~~g~~ 189 (261)
T TIGR02127 132 FLEYARANG--AGIFVLVKTSNPGG---ADLQDLRVSDG-----------------RTVYEEVAELAGELNESPGDCSSV 189 (261)
T ss_pred HHHHHhhcC--CEEEEEEeCCCCCH---HHHhhhhccCC-----------------CCHHHHHHHHHHHhccccCcCCce
Confidence 999876555 56666666776643 34433222210 0135789999998864 489
Q ss_pred eEEe---Cccchh----hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCC-EEEeCCcccCCCCHHHHHHH
Q psy4093 226 GLVC---QAPSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGAD-LGVVGRGITQAPDPVEAARR 294 (434)
Q Consensus 226 GvVc---s~~e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD-~IVVGR~It~A~DP~~aa~~ 294 (434)
|+|| ++.|+. .+ +++.+||||||++ |...+||. .+.+..|+| +||||||||+|.||.+++++
T Consensus 190 GvV~gAT~p~e~~~iR~~~-~~~~il~PGigaq--G~~~~d~~----r~~~~~g~~~~ivvgR~I~~a~~p~~a~~~ 259 (261)
T TIGR02127 190 GAVVGATSPGDLLRLRIEM-PTAPFLVPGFGAQ--GAEAADLR----GLFGADGSGLLINSSRGVLFAGPRSSALVA 259 (261)
T ss_pred EEEECCCCHHHHHHHHHhC-CCCeEEeCCcCCC--CCCHHHHH----HHhcccCCCEEEEcCHHHhcCCChHHHHHh
Confidence 9999 777764 44 7899999999998 55555552 111146888 99999999999999887653
No 6
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=99.93 E-value=3.6e-27 Score=226.17 Aligned_cols=187 Identities=30% Similarity=0.382 Sum_probs=132.5
Q ss_pred cceecccchhhhccCC----CccccccchhchhhhHHHh-hhcccCHHHHHHHHHH---Hhcc-ccceEEEcccCCchhH
Q psy4093 78 FDSVMHYSRKAFSKNG----DDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFR---LIGE-WAHLVTVHSIAGPGPL 148 (434)
Q Consensus 78 y~SVMhYg~~aFs~~g----~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~---~~~~-~~d~vTvH~~~G~~ml 148 (434)
|-.+..-|...|...| ..++...... .+.++ |+|++|||||+..+++ .... ++|++|||+++|.+||
T Consensus 25 ~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~----~~~I~~D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~G~~tl 100 (226)
T PF00215_consen 25 YVDIIKVGTPLFLAYGLEALPEIIEELKER----GKPIFLDLKLGDIGNTVARYAEAGFAAFELGADAVTVHPFAGDDTL 100 (226)
T ss_dssp GSSEEEEEHHHHHHHCHHHHHHHHHHHHHT----TSEEEEEEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEGTTHHHHH
T ss_pred cceEEEEChHHHhcCChhhHHHHHHHHHHh----cCCEeeeeeecccchHHHHHHHHhhhhhcCCCcEEEEeccCCHHHH
Confidence 4455555566666666 4444333222 23445 9999999999999997 3444 7999999999999999
Q ss_pred HHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcC-CCCceE
Q psy4093 149 QEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFP-GLIAGL 227 (434)
Q Consensus 149 ~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~-~gv~Gv 227 (434)
+++++.+++.+. +++++|+.||++++.+.+++ + .... .+.+.+.+..+. .+++|+
T Consensus 101 ~~~~~~a~~~~~-~~~~~v~~~s~~~~~~~~~~---~-~~~~-------------------~~~v~~~~~~~~~~g~~G~ 156 (226)
T PF00215_consen 101 EAAVKAAKKHGR-KGVFVVDLLSNPDSEDLQDL---G-LGVD-------------------QEIVHRAADLAAKAGVDGI 156 (226)
T ss_dssp HHHHHHHHHTTE-SEEEEEESTTSTTHHHHHHH---H-CTHH-------------------HHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHhccCC-cceEEEEecCCCCHHHHHhh---h-cccH-------------------HHHHHHHHHhhccccccCc
Confidence 999999876641 47999999999654433331 1 1110 122333333332 269999
Q ss_pred EeCccchh--hcCCCceEecCcccc-cCCCCCCCCc-c-CCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093 228 VCQAPSVL--ASNPGLLQLTPGIHL-NQTGDNKGQQ-Y-NGPTDVITLRGADLGVVGRGITQAPDPVEAARRY 295 (434)
Q Consensus 228 Vcs~~e~~--~~~~~~l~vtPGIr~-~~~~~~~~dQ-~-~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i 295 (434)
|||+.+.. ..++++.+++||||+ + +...|+| . .+|..+. ..|+|++||||+||+|+||.+++++|
T Consensus 157 v~~~~~~~~~~~~~~~~~l~PGi~~~~--~~~~~~~~~~~~~~~~~-~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 157 VCSATEPAIRKAGPNFKILTPGIGAIQ--GAVAGGQKRATTPAAAK-QAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp EETTTCHHHHHHTTTSEEEEESBSSST--CEECSSHHCHHHHHHHH-HTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred ccccccccccccccchhhccCCCCccc--ccCcccccccccHHHHH-hcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 99998762 227899999999998 5 5555666 3 4666667 79999999999999999999999987
No 7
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.93 E-value=5e-26 Score=217.90 Aligned_cols=181 Identities=17% Similarity=0.180 Sum_probs=130.6
Q ss_pred ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHh
Q psy4093 77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRIS 155 (434)
Q Consensus 77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~ 155 (434)
++..+..-|...|...|...+....... .++.+| |+|+||||||+..++. ..++|++|+|+.+|.+||+++++++
T Consensus 27 ~~v~~iKVG~~L~~~~G~~~i~~lk~~~--~~~~IflDlKl~DIp~tv~~~~~--~~Gad~~tv~~~~g~~~i~~a~~~a 102 (218)
T PRK13305 27 DHVDIVEAGTILCLNEGLGAVKALREQC--PDKIIVADWKVADAGETLAQQAF--GAGANWMTIICAAPLATVEKGHAVA 102 (218)
T ss_pred ccCCEEEECHHHHHHhCHHHHHHHHHhC--CCCEEEEEeecccChHHHHHHHH--HcCCCEEEEecCCCHHHHHHHHHHH
Confidence 3445677778888877765554432221 134456 9999999999988643 4479999999999999999999976
Q ss_pred hhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh
Q psy4093 156 DELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL 235 (434)
Q Consensus 156 ~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~ 235 (434)
.+.+....+.+++++|+ ...+++.++|+. +.++++|..+.+ .|+|||++|+.
T Consensus 103 ~~~~~~~~~~llgV~t~---~~~~~l~~~g~~-----------------------~~v~h~a~~a~~--~G~v~s~~e~~ 154 (218)
T PRK13305 103 QRCGGEIQIELFGNWTL---DDARDWHRIGVR-----------------------QAIYHRGRDAQA--SGQQWGEADLA 154 (218)
T ss_pred HhcCCcccceEEEecCc---chHHHHHHcCCH-----------------------HHHHHHHHHHHH--hCCCCCHHHHH
Confidence 54332112456777644 234666555542 256667776654 24699999985
Q ss_pred ----hcCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093 236 ----ASNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA 302 (434)
Q Consensus 236 ----~~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a 302 (434)
.++++| ++||||||+. +...+||... |++|||||||+|+||.+++++|++ +|++
T Consensus 155 ~ir~~~~~~~~i~VtpGIr~~--~~~~~dq~rv----------d~iVVGR~It~A~dP~~aa~~i~~-~i~~ 213 (218)
T PRK13305 155 RMKALSDIGLELSITGGITPA--DLPLFKDIRV----------KAFIAGRALAGAANPAQVAADFHA-QIDA 213 (218)
T ss_pred HHHHHhCCCCcEEEeCCcCcc--ccccccccCC----------CEEEECCcccCCCCHHHHHHHHHH-HHHH
Confidence 577889 9999999998 6656666433 999999999999999999999998 5554
No 8
>KOG1377|consensus
Probab=99.92 E-value=1.2e-25 Score=214.82 Aligned_cols=184 Identities=36% Similarity=0.601 Sum_probs=159.5
Q ss_pred cccccchhchhhhHHHh-hhcccCHHHHHHHHHH----HhccccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEe
Q psy4093 96 TIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL 170 (434)
Q Consensus 96 Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~----~~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~l 170 (434)
+......+++.+.+.|+ |.|++|||||+..+|+ .+..|+|++++|+..|++.+.+..+...+.+..++++++++|
T Consensus 73 ~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h~v~g~~i~~g~~rk~~k~~~egG~lllAem 152 (261)
T KOG1377|consen 73 SGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAHGVPGRGIIKGLNRKLLKDHGEGGVLLLAEL 152 (261)
T ss_pred cHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhccCcccchHHHHHhhhccccCCCCceEEEEEe
Confidence 33344578889999999 9999999999999999 466699999999999999999887665443334789999999
Q ss_pred CCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchhhcCCCceEecCcccc
Q psy4093 171 SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHL 250 (434)
Q Consensus 171 ss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~~~~~~~l~vtPGIr~ 250 (434)
+++++|...+|.+ ...++++...+.+.|+||....+ ..+++++.|||+.+
T Consensus 153 s~kg~L~~~dy~e----------------------------a~~aI~ee~~d~~~G~v~g~~~~--ldrq~l~~tpgv~~ 202 (261)
T KOG1377|consen 153 SSKGSLITGDYTE----------------------------AATAIAEEDIDFVNGFVAGSIVA--LDRQELIMTPGVEL 202 (261)
T ss_pred ccCCceeehhHHH----------------------------HHHHHHHhhhchheeEEeeeeee--ccHHhhccCCCCcc
Confidence 9999998888875 45667777666799999999776 45668899999999
Q ss_pred cCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy4093 251 NQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKK 309 (434)
Q Consensus 251 ~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~ 309 (434)
..++|++|+||.+|.++|...|+|++||||.||.++.|++++++||+..|.||.+|+.+
T Consensus 203 d~~~d~lgqqy~~p~e~I~~~~~dIiivgrglt~a~~~~~~~e~YRq~~w~a~~~r~~~ 261 (261)
T KOG1377|consen 203 DAAGDNLGQQYRLPVEVIVSLGSDIIIVGRGLTAASKPVQAIERYRQAYWAAYQRRLGQ 261 (261)
T ss_pred chhhcchhhhhcCcHHhheecCceEEEEcCccccccCcHHHHHHHHHHHHHHHHHhhcC
Confidence 98899999999999999967999999999999999999999999999999999999863
No 9
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.88 E-value=5.6e-23 Score=196.67 Aligned_cols=181 Identities=18% Similarity=0.129 Sum_probs=132.5
Q ss_pred ccceecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHh
Q psy4093 77 DFDSVMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRIS 155 (434)
Q Consensus 77 Dy~SVMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~ 155 (434)
++..+..-|...|...|..++......+ .+..++ |+|++|||||+... ....++|++|||+.+|.+|+++++++.
T Consensus 27 ~~v~~~kvG~~l~~~~G~~~i~~lk~~~--~~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a~~~~i~~~~~~~ 102 (216)
T PRK13306 27 EEVDIIEVGTILLLAEGMKAVRVLRALY--PDKIIVADTKIADAGKILAKM--AFEAGADWVTVICAAHIPTIKAALKVA 102 (216)
T ss_pred ccCCEEEEChHHHHHhCHHHHHHHHHHC--CCCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCCCHHHHHHHHHHH
Confidence 3446677777777777765554332221 123345 99999999999976 334489999999999999999999987
Q ss_pred hhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh
Q psy4093 156 DELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL 235 (434)
Q Consensus 156 ~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~ 235 (434)
++.| ..++|+.+++. +.+.+. .+.... ..+.+++++..+. ++|+|||++|+.
T Consensus 103 ~~~g---~~~~V~llts~---~~~~l~-~~~~~~-------------------~~~~vl~~a~~~~--~~G~v~s~~~~~ 154 (216)
T PRK13306 103 KEFN---GEIQIELYGNW---TWEQAQ-QWRDAG-------------------ISQVIYHRSRDAQ--LAGVAWGEKDLN 154 (216)
T ss_pred HHcC---CEEEEEECCCC---CHHHHH-HHHcCC-------------------hhhhhhhhhhhhh--hcCCCCCHHHHH
Confidence 6555 37888888872 333332 122111 1257888888874 899999998885
Q ss_pred ----hcCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093 236 ----ASNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA 302 (434)
Q Consensus 236 ----~~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a 302 (434)
.++++| +.|+||||++ |-.... +.|||++|||||||+|+||.+++++|++ +|++
T Consensus 155 ~ir~~~~~~~~i~V~gGI~~~-----------~~~~~~-~~~ad~~VvGr~I~~a~dp~~a~~~i~~-~i~~ 213 (216)
T PRK13306 155 KVKKLSDMGFKVSVTGGLVVE-----------DLKLFK-GIPVKTFIAGRAIRGAADPAAAARAFKD-EIAK 213 (216)
T ss_pred HHHHHhcCCCeEEEcCCCCHh-----------hHHHHh-cCCCCEEEECCcccCCCCHHHHHHHHHH-HHHh
Confidence 456788 9999999986 222234 6799999999999999999999999998 5544
No 10
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.86 E-value=2.3e-21 Score=191.73 Aligned_cols=176 Identities=22% Similarity=0.217 Sum_probs=125.1
Q ss_pred ccceecccchhhhccCCCc-------cccccchhchhhhHHHhhhcccCHHHHHHHHHHHhc--c-ccceEEEcccCCch
Q psy4093 77 DFDSVMHYSRKAFSKNGDD-------TIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIG--E-WAHLVTVHSIAGPG 146 (434)
Q Consensus 77 Dy~SVMhYg~~aFs~~g~~-------Ti~~~~~igqr~~~si~dlKl~DI~nTv~~~~~~~~--~-~~d~vTvH~~~G~~ 146 (434)
|+-.+.+-+...|...|.. ++......| ...|+|+|++|||||+..+++.+. . ++|++|||+++|.+
T Consensus 52 ~~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g---~~VilD~K~~DI~nTv~~ya~a~~~~~~g~DavTVhp~~G~d 128 (278)
T PRK00125 52 DLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAG---VLVIADAKRGDIGSTAEAYAKAAFESPLEADAVTVSPYMGFD 128 (278)
T ss_pred CcccEEeccHHHHHhcCchhhhHHHHHHHHHHHCC---CcEEEEeecCChHHHHHHHHHHHhcCccCCcEEEECCcCCHH
Confidence 4445566667777776654 332222222 123349999999999999999887 4 59999999999999
Q ss_pred hHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcc-hhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC---
Q psy4093 147 PLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGF-KAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG--- 222 (434)
Q Consensus 147 ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~--- 222 (434)
||+++++.+.+.+ +++++++.||++++ .+++++++ .. ...++.|++++..+.+
T Consensus 129 ~l~~~~~~~~~~~--k~vfVlvlTSnp~s---~~lq~~~~~~~------------------~~l~~~V~~~a~~~~~~~~ 185 (278)
T PRK00125 129 SLEPYLEYAEEHG--KGVFVLCRTSNPGG---SDLQFLRTADG------------------RPLYQHVADLAAALNNLGN 185 (278)
T ss_pred HHHHHHHHHHhcC--CEEEEEEeCCCCCH---HHHHhhhccCC------------------CcHHHHHHHHHHHHhcccc
Confidence 9999999886655 56777777777643 34433222 11 1135788888876432
Q ss_pred ---CCce-EEeC--ccchh---hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCC-----EEEeCCcccCCCCH
Q psy4093 223 ---LIAG-LVCQ--APSVL---ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGAD-----LGVVGRGITQAPDP 288 (434)
Q Consensus 223 ---gv~G-vVcs--~~e~~---~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD-----~IVVGR~It~A~DP 288 (434)
|.+| |||+ +.|+. +.-+++.++|||||++ +.+|++++ +.|++ ++.|+|+|+.|.++
T Consensus 186 ~~~g~~G~VVgaT~p~e~~~iR~~~~~~~iL~PGigaQ---------Gg~~~~~~-~~~~~~~~~~l~~~SR~il~a~~~ 255 (278)
T PRK00125 186 CGYGSIGLVVGATFPPELAAVRKILGGMPLLIPGIGAQ---------GGDAEATV-RAGGAAGNGGIPNSSRAILYAGPG 255 (278)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHhCCCCeEEeCCcCCC---------CcCHHHHH-HHhhhcCCCEEeecCHHHHcCCCc
Confidence 6889 9999 56664 2324488999999986 56789999 78776 56799999999888
No 11
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=99.85 E-value=1.8e-22 Score=194.41 Aligned_cols=111 Identities=39% Similarity=0.614 Sum_probs=95.4
Q ss_pred ccCCCCCCcccccCCCCCccccCC-CCCcccccccccCCCCeecEEEcCCc-----------------------------
Q psy4093 5 WKNRPSLNFWEESGQFEGDIMLEG-PERTGVISSIDRWPGGLIPYYIDDDH----------------------------- 54 (434)
Q Consensus 5 ~~~~~~~~~~e~~g~~EGDi~l~~-~~rng~~~~~~rWPn~~VpY~I~~~~----------------------------- 54 (434)
|....++|.+....+|||||++++ ..||++..+.+|||| +|||+|++.+
T Consensus 9 ~~~~~~~n~~~~~~~~eGDI~l~~~~~R~a~~~~~~~Wp~-~VPY~i~~~~~~~~~~~I~~Am~~~~~~TCirF~~rt~e 87 (230)
T cd04282 9 DQDIFEINLGAGLDLFEGDILLDEGQSRNGLIGDTYRWPF-PIPYILDDSLDLNAKGVILKAFEMYRLKSCVDFKPYEGE 87 (230)
T ss_pred hhhHHhhcccCCcccccccccCCcccccccccCcccCCCc-ceeEEECCCCCHHHHHHHHHHHHHHHhCCCeeEEECCCC
Confidence 444456777888889999999986 579999999999999 9999998764
Q ss_pred ----------cc----------------------------------------------------------ccccccccCC
Q psy4093 55 ----------FC----------------------------------------------------------TERNFKKYPP 66 (434)
Q Consensus 55 ----------~c----------------------------------------------------------~~~NF~k~~~ 66 (434)
|| .++||+|++.
T Consensus 88 ~~yi~i~~~~GC~S~vG~~gg~q~isl~~~C~~~Gti~HEl~HalGf~HEqsRpDRD~yV~I~~~nI~~~~~~nF~k~~~ 167 (230)
T cd04282 88 SNYIFFFKGSGCWSMVGDQQGGQNLSIGAGCDYKATVEHEFLHALGFYHEQSRSDRDDYVKIWWDQILSGREHNFNKYDD 167 (230)
T ss_pred CcEEEEEcCCCeeeccCccCCeEEEEECCCcCCCchHHHHHHHHhCCcccccccccccceEEeecccCchHHHHhhhcCc
Confidence 23 5679999999
Q ss_pred CCcccCccccccceecccchhhhccC-CCccccccc-----hhchhhhHHHhhhcc
Q psy4093 67 SEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVPHF-----VMAQNVLWSIIILKL 116 (434)
Q Consensus 67 ~~~~~~g~pYDy~SVMhYg~~aFs~~-g~~Ti~~~~-----~igqr~~~si~dlKl 116 (434)
..++++|+||||+|||||++++||++ +++||+++. .+|||.++|..|++.
T Consensus 168 ~~~~~~g~pYDy~SIMHY~~~aFs~~~~~pTi~~~~~~~~~~iGqr~~lS~~Di~~ 223 (230)
T cd04282 168 SFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRLDFSDIDLER 223 (230)
T ss_pred cccccCCCCCCcccccccCCCccccCCCCceeeecCCcccccccccCCCCHHHHHH
Confidence 99999999999999999999999999 899999874 489999998777554
No 12
>KOG1377|consensus
Probab=99.84 E-value=2.3e-22 Score=192.30 Aligned_cols=109 Identities=35% Similarity=0.512 Sum_probs=105.4
Q ss_pred ccccChhhhhhhccchhhHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHH-HHHHHHHH
Q psy4093 313 RIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEE-VQKELTAL 391 (434)
Q Consensus 313 ~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~-~v~~L~~l 391 (434)
|.+++|++|++++.||++++|+.+|.+|++|||++.|+....+++.+|+++||++|.+|+|.++|.||+.+ +++.|..|
T Consensus 1 ~~~~~~~~ra~~~~~~~~~~l~~~m~~kqtnL~~~~d~~~~~~ll~~~~~~Gpf~l~sk~h~di~~df~~~~~~k~L~aL 80 (261)
T KOG1377|consen 1 RVKLTYAERAALTKSPVAKKLLNLMMKKQTNLCLAVDLFLERELLQLALRFGPFILKSKTHSDIFFDFSLFNSGKDLRAL 80 (261)
T ss_pred CccccHhHHhhhccCchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhCCeEeeccccCceeecccccccHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred HhcCCCeeeecCCCCcchhHHHHHhhcCcc
Q psy4093 392 AKQHEFLRSRNGWFSPILSSFSLRFRDDKT 421 (434)
Q Consensus 392 a~k~gf~iFlDlKf~DIpnTV~~a~~~~~~ 421 (434)
|++|.|.||+|+||+||+|||..||.+|--
T Consensus 81 A~a~~f~I~edrkffDigntvg~qY~gg~~ 110 (261)
T KOG1377|consen 81 AQAYAFLIFEDRKFFDIGNTVGLQYKGGPL 110 (261)
T ss_pred HHHHHHHHHhhhhcccccceeccccccchH
Confidence 999999999999999999999999999743
No 13
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.77 E-value=2.2e-18 Score=181.60 Aligned_cols=254 Identities=17% Similarity=0.109 Sum_probs=170.7
Q ss_pred HHHhhhcccCHHHHHHHHHHHhcc-c-cceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcc
Q psy4093 109 WSIIILKLADIGAAVGHQFRLIGE-W-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGF 186 (434)
Q Consensus 109 ~si~dlKl~DI~nTv~~~~~~~~~-~-~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~ 186 (434)
+.|.|.|..|| ||+..+++.+.+ + +|.+|||+++|.++++++++.. + +++|+|+.||+|++.+.+++..
T Consensus 90 ~vI~DaKrgDI-~T~~~yA~a~f~~~~aDAiTv~pymG~Dsl~pfl~~~---~--kgvfvL~~tSNpga~~~Q~~~~--- 160 (477)
T PRK05500 90 PIILDAKHGDL-NTSTIFAKTIFEQWQVDAVTLSPYAGQDHVAPFLVYP---D--KGVFILCHTSNPGAIALQEYPT--- 160 (477)
T ss_pred eEEEEecccCh-HHHHHHHHHHHhhcCCCEEEECCccCccchHHHHhcC---C--CcEEEEEeCCCcCHHHHhhccc---
Confidence 34569999999 599999997775 4 9999999999999999999862 4 7899999999998765444321
Q ss_pred hhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCcc--ch-h---hcCCCceEecCcccccCCCCCCCC
Q psy4093 187 KAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAP--SV-L---ASNPGLLQLTPGIHLNQTGDNKGQ 259 (434)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~--e~-~---~~~~~~l~vtPGIr~~~~~~~~~d 259 (434)
. ++ ..++.+++.++.+.. +-.|+|..+. +. . ...|+..++.|||+.|
T Consensus 161 ~------------g~------~ly~~v~~~~~~~~~~~~~g~VvGAT~p~~~~~iR~~~p~~~iL~PGiGAQ-------- 214 (477)
T PRK05500 161 P------------EN------PFYLQVVKEAKTWGTPEQLGLEVGTTNPEVLAKIRQIAPERLILLRSIWAE-------- 214 (477)
T ss_pred C------------CC------cHHHHHHHHHHHhCCCCceEEEECCCChHHHHHHHHhCCCCEEEccccccC--------
Confidence 0 11 135678888877653 3456666663 22 2 4557888999999964
Q ss_pred ccCCHHHHHHHcCCC------EEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhhhhccch---hh
Q psy4093 260 QYNGPTDVITLRGAD------LGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCR---IS 330 (434)
Q Consensus 260 Q~~TP~~Ai~~~GAD------~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~---~~ 330 (434)
++++++++ ++|+| +|+|||+|+.|+||.++|+++++ ++++++++..++++.-.+-.-.=-.+..+| ++
T Consensus 215 -Gg~~~~~~-~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 291 (477)
T PRK05500 215 -KGNLNQIL-TAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLRE-EINQIRQQIVQESSSCDLWTPDVCLLNQHPHQDLI 291 (477)
T ss_pred -CCCHHHHH-HhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHH-HHHHHHHHhcccCCcccccCccccccccCcHHHHH
Confidence 67889999 99998 99999999999999999999998 889999998766665333222211122233 45
Q ss_pred HHHHHHh----------hhcCCcEEEEec--CCCHHHHHHHHHHhCCceeEEeEceeee---ecCCHHHHHHHHHHHhcC
Q psy4093 331 STLLDIM----------VKKKSNLCVALD--VTQAKDLLTLTRQLGPHIAVLKTHSDAV---RDFSEEVQKELTALAKQH 395 (434)
Q Consensus 331 ~~l~~~m----------~~k~s~LivAlD--~~~~~~al~la~~lgp~i~~lKvg~dl~---~~~g~~~v~~L~~la~k~ 395 (434)
+.|++.- ..++|+..+=+- +.+++-+..+++.+...+-- ...|.+ .-.|..+...+ |.+.
T Consensus 292 ~~l~~~~al~fG~F~L~SG~~S~~YiD~~~lls~P~~l~~v~~~la~~l~~--~~~D~I~Gia~gGiPlAt~l---A~~l 366 (477)
T PRK05500 292 LQLYDIGCLLFGEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKN--LTFDRIAGIPYGSLPTATGL---ALHL 366 (477)
T ss_pred HHHHHCCCeEeCcEEECCcCcCCEEEEChhhhcCHHHHHHHHHHHHHHhcc--CCCCEEEEEccchHHHHHHH---HHHh
Confidence 5555541 112456665443 23555555444444433321 122332 22345555444 3457
Q ss_pred CCeeeecCCC
Q psy4093 396 EFLRSRNGWF 405 (434)
Q Consensus 396 gf~iFlDlKf 405 (434)
|.+++.-+|-
T Consensus 367 g~p~v~vRKe 376 (477)
T PRK05500 367 HHPMIFPRKE 376 (477)
T ss_pred CCCEEEEecC
Confidence 8788888885
No 14
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=99.74 E-value=2.8e-18 Score=166.58 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=78.7
Q ss_pred HHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHH
Q psy4093 333 LLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSF 412 (434)
Q Consensus 333 l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV 412 (434)
.+++|..+++|||||||+++.+++++|++++++++|++|+|+++|..+|++++++|++ .+++||+|+|||||||||
T Consensus 3 ~~~~~~~~~~~livaLD~~~~~~~~~~~~~~~~~~~~~Kvg~~l~~~~g~~~~~el~~----~~~~VflDlK~~DIpnT~ 78 (240)
T COG0284 3 GLRLMEAMSRRLIVALDVPTEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKA----RGKKVFLDLKLADIPNTV 78 (240)
T ss_pred hhhhhhhcccCeEEEECCCCHHHHHHHHHHhhccccEEEEchHHHHhccHHHHHHHHH----hCCceEEeeecccchHHH
Confidence 3567888888899999999999999999999999999999999999999999999964 678999999999999999
Q ss_pred HHHhhcCccc
Q psy4093 413 SLRFRDDKTL 422 (434)
Q Consensus 413 ~~a~~~~~~~ 422 (434)
++++++--.+
T Consensus 79 ~~~~~~~~~~ 88 (240)
T COG0284 79 ALAAKAAADL 88 (240)
T ss_pred HHHHHHhhhc
Confidence 9999984433
No 15
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.73 E-value=1.2e-16 Score=151.94 Aligned_cols=149 Identities=31% Similarity=0.350 Sum_probs=113.3
Q ss_pred hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhH
Q psy4093 112 IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAIT 190 (434)
Q Consensus 112 ~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~ 190 (434)
+|+|++||+||....++.+.+ ++|++|+|+.+|.++++++.+..++.| .++++++.++++..+. .+..
T Consensus 58 ~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g--~~~~v~~~~~~~~~~~--~~~~------- 126 (215)
T PRK13813 58 ADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESG--GKVFVVVEMSHPGALE--FIQP------- 126 (215)
T ss_pred EEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcC--CeEEEEEeCCCCCCCC--CHHH-------
Confidence 499999999999998886666 699999999999999999888887666 5666666665432222 1111
Q ss_pred HHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchh-------hcCCCceEecCcccccCCCCCCCCccCC
Q psy4093 191 LELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYNG 263 (434)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~-------~~~~~~l~vtPGIr~~~~~~~~~dQ~~T 263 (434)
.+..++.++.+. |.+|.++++.... ..+.++.+++|||+++ + .+
T Consensus 127 ------------------~~~~v~~m~~e~--G~~g~~~~~~~~~~i~~l~~~~~~~~~ivdgGI~~~--g-------~~ 177 (215)
T PRK13813 127 ------------------HADKLAKLAQEA--GAFGVVAPATRPERVRYIRSRLGDELKIISPGIGAQ--G-------GK 177 (215)
T ss_pred ------------------HHHHHHHHHHHh--CCCeEEECCCcchhHHHHHHhcCCCcEEEeCCcCCC--C-------CC
Confidence 124566666654 6899999884322 2344566799999986 2 24
Q ss_pred HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093 264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA 302 (434)
Q Consensus 264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a 302 (434)
+.+++ ++|||++|+||+|++++||.++++++++ .|++
T Consensus 178 ~~~~~-~aGad~iV~Gr~I~~~~d~~~~~~~l~~-~~~~ 214 (215)
T PRK13813 178 AADAI-KAGADYVIVGRSIYNAADPREAAKAINE-EIRG 214 (215)
T ss_pred HHHHH-HcCCCEEEECcccCCCCCHHHHHHHHHH-HHhc
Confidence 89999 9999999999999999999999999996 6654
No 16
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=99.70 E-value=2.7e-17 Score=161.67 Aligned_cols=89 Identities=22% Similarity=0.184 Sum_probs=79.5
Q ss_pred hHHHHHHhhhcCCcEEEEecCCCH-----------HH----HHHHHHHhCCceeEEeEceeeeecCCHHHHHHHH---HH
Q psy4093 330 SSTLLDIMVKKKSNLCVALDVTQA-----------KD----LLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELT---AL 391 (434)
Q Consensus 330 ~~~l~~~m~~k~s~LivAlD~~~~-----------~~----al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~---~l 391 (434)
.+||++.|.+|+++|||++|.... +. .+++++++++++|++|+|+++|.++|+++++.|. +.
T Consensus 2 ~~kl~~~~~~~~s~lcvglDp~~~~~~~~~~~~~~~~~~~f~~~ii~~l~~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~ 81 (261)
T TIGR02127 2 ADRLNERILARRSPLCVGLDPRLELLPEWGLPSSAAGLQAFCLRIIDATAEYAAVVKPQVAFFERFGSEGFKALEEVIAH 81 (261)
T ss_pred HHHHHHHHHHhCCCEEEEECCChhhcccccccchHHHHHHHHHHHHHhcCCcceEEecCHHHHHhcCHHHHHHHHHHHHH
Confidence 368999999999999999999773 45 4899999999999999999999999999987776 66
Q ss_pred HhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093 392 AKQHEFLRSRNGWFSPILSSFSLRFRD 418 (434)
Q Consensus 392 a~k~gf~iFlDlKf~DIpnTV~~a~~~ 418 (434)
++++||+||+|+|+|||||||+...++
T Consensus 82 ~~~~g~~VilD~K~~DIpnTv~~~a~a 108 (261)
T TIGR02127 82 ARSLGLPVLADVKRGDIGSTASAYAKA 108 (261)
T ss_pred HHHCCCeEEEEeeccChHHHHHHHHHH
Confidence 778999999999999999999977665
No 17
>KOG3714|consensus
Probab=99.68 E-value=9.5e-18 Score=174.59 Aligned_cols=109 Identities=43% Similarity=0.681 Sum_probs=93.2
Q ss_pred CCCcccccCCCCCccccC---------CCCCcccccccccCCCCeecEEEcCCc--------------------------
Q psy4093 10 SLNFWEESGQFEGDIMLE---------GPERTGVISSIDRWPGGLIPYYIDDDH-------------------------- 54 (434)
Q Consensus 10 ~~~~~e~~g~~EGDi~l~---------~~~rng~~~~~~rWPn~~VpY~I~~~~-------------------------- 54 (434)
..+++...+.++||+.+. ...||+..++.+||||++|||.|++.+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~Wp~~~ipY~i~~~~~~~~r~~i~~A~~~~~~~TCi~F~~~ 121 (411)
T KOG3714|consen 42 EADPELNASGPEGDGRLNEQLGRSISKRSRRNGTSNPERRWPNGVIPYYIDGSFTSSQRALIRQAMREIENHTCIRFVER 121 (411)
T ss_pred cccccccccCccccccccccccccccchhhhhcccChhhcCCCCeeeeEECCCCCHHHHHHHHHHHHHHhhCcceEEEeC
Confidence 466777788899999874 247999999999999999999998874
Q ss_pred --------------cc-----------------------------------------------------------ccccc
Q psy4093 55 --------------FC-----------------------------------------------------------TERNF 61 (434)
Q Consensus 55 --------------~c-----------------------------------------------------------~~~NF 61 (434)
+| +++||
T Consensus 122 ~~~~~~~~~~~~~~gC~S~VGr~gg~~q~~sl~~~C~~~G~i~HEl~HaLGf~HehsR~DRD~yV~I~~~ni~~~~~~nF 201 (411)
T KOG3714|consen 122 TTPDKDYLIVFTGGGCYSYVGRRGGGQQLLSLGDGCDRFGTIVHELMHALGFWHEHSRPDRDNYVSINWDNIDPGQEYNF 201 (411)
T ss_pred CCCCcceEEEeCCCcceeeeCccCCCccceecCCCcCcCchhHHHHHHHhhhhhccCcccccCceEEeeccCChhhhhhh
Confidence 13 57899
Q ss_pred cccCCCCcccCccccccceecccchhhhccCCCc-cccccch-----hchhhhHHHhhhcccC
Q psy4093 62 KKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDD-TIVPHFV-----MAQNVLWSIIILKLAD 118 (434)
Q Consensus 62 ~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g~~-Ti~~~~~-----igqr~~~si~dlKl~D 118 (434)
+|+++..+++||+||||+|||||++++||+|++. ||+|+.. ||||..++..|++..+
T Consensus 202 ~k~~~~~~~~~~~pYDygSvMHY~~~afs~~~~~~ti~~~~~~~~~~mGqr~~~S~~Di~~iN 264 (411)
T KOG3714|consen 202 EKYSPDEVTTYGVPYDYGSVMHYAPYAFSKNGSLPTIVPKDNGFQNTMGQRERLSFYDIRKIN 264 (411)
T ss_pred hhcChhhhhccCCcccCCcccccCCcccCcCCCCCceecccccccccccccCcCCHHHHHHHH
Confidence 9999999999999999999999999999999964 9999873 8999999877755433
No 18
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=99.67 E-value=1.3e-17 Score=158.08 Aligned_cols=60 Identities=40% Similarity=0.568 Sum_probs=52.9
Q ss_pred ccccccccCCCCcccCccccccceecccchhhhccCC-Cccccccc-------hhchhhhHHHhhhcc
Q psy4093 57 TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNG-DDTIVPHF-------VMAQNVLWSIIILKL 116 (434)
Q Consensus 57 ~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g-~~Ti~~~~-------~igqr~~~si~dlKl 116 (434)
.++||+|++...++.+|+||||+|||||++++||+++ .+||+|+. .+|||.++|..|++.
T Consensus 125 ~~~nF~k~~~~~~~~~g~pYDy~SiMHY~~~aFs~~~~~~Ti~p~~~~~~~~~~iGqr~~lS~~Di~~ 192 (200)
T cd04281 125 QEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQRTRLSEGDIIQ 192 (200)
T ss_pred hhhhhhhcCccccccCCCccCCCccccCCCCccccCCCCCceEECCCcccccccccccCCCCHHHHHH
Confidence 5679999999999999999999999999999999987 68999874 389999999777654
No 19
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.65 E-value=1.5e-16 Score=152.70 Aligned_cols=75 Identities=12% Similarity=0.015 Sum_probs=69.4
Q ss_pred CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093 341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR 417 (434)
Q Consensus 341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~ 417 (434)
..+||||||+++.++|++|++++.+++.++|+|++||.++|+++|++|++.. .|+.||+|+|||||||||++++.
T Consensus 3 ~~~livALD~~~~~~A~~l~~~l~~~v~~iKVG~~L~~~~G~~~i~~lk~~~--~~~~IflDlKl~DIp~tv~~~~~ 77 (218)
T PRK13305 3 RPLLQLALDHTSLEAAQRDVTLLKDHVDIVEAGTILCLNEGLGAVKALREQC--PDKIIVADWKVADAGETLAQQAF 77 (218)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHccccCCEEEECHHHHHHhCHHHHHHHHHhC--CCCEEEEEeecccChHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999997521 28999999999999999999876
No 20
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=99.57 E-value=2.4e-15 Score=143.93 Aligned_cols=72 Identities=25% Similarity=0.236 Sum_probs=67.6
Q ss_pred EEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhcC
Q psy4093 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDD 419 (434)
Q Consensus 344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~~ 419 (434)
||||||+++.++++++++++++++|++|+|+++|.++|++++++|++ .+++||+|+|||||||||+.+++..
T Consensus 1 livALD~~~~~~a~~i~~~~~~~v~~iKvg~~l~~~~g~~~i~~l~~----~~~~i~~DlK~~DIg~tv~~~~~~~ 72 (216)
T cd04725 1 LIVALDPPDEEFALALIDALGPYVCAVKVGLELFEAAGPEIVKELRE----LGFLVFLDLKLGDIPNTVAAAAEAL 72 (216)
T ss_pred CEEEeCCCCHHHHHHHHHhcCCcccEEEECHHHHHhcCHHHHHHHHH----CCCcEEEEeecCchHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999964 6799999999999999999986543
No 21
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=99.53 E-value=6.7e-15 Score=140.39 Aligned_cols=71 Identities=32% Similarity=0.416 Sum_probs=66.5
Q ss_pred EEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD 418 (434)
Q Consensus 344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~ 418 (434)
||||||+++.++++++++++++++|++|+|.++|.++|++++++|++ .+++||+|+|+||||||++++++.
T Consensus 1 ~ivAlD~~~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~~v~~l~~----~~~~v~lD~K~~Dig~t~~~~~~~ 71 (213)
T TIGR01740 1 LIVALDVTTKDEALDLADSLGPEIEVIKVGIDLLLDGGDKIIDELAK----LNKLIFLDLKFADIPNTVKLQYES 71 (213)
T ss_pred CEEECCCCCHHHHHHHHHhcCCcCcEEEECHHHHHhcCHHHHHHHHH----cCCCEEEEEeecchHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999964 678999999999999999988543
No 22
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=99.51 E-value=2.1e-14 Score=137.59 Aligned_cols=76 Identities=11% Similarity=0.049 Sum_probs=68.8
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093 340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR 417 (434)
Q Consensus 340 k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~ 417 (434)
++.+||||||+++.++|++|++++.+++.++|+|.+||.++|++++++|+++. -|+.||+|+|+|||||||+.++.
T Consensus 2 ~~~~l~vALD~~~~~~a~~l~~~l~~~v~~~kvG~~l~~~~G~~~i~~lk~~~--~~~~v~~DLK~~Di~~~v~~~~~ 77 (216)
T PRK13306 2 SKPLLQIALDNQDLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALY--PDKIIVADTKIADAGKILAKMAF 77 (216)
T ss_pred CCCcEEEEecCCCHHHHHHHHHHccccCCEEEEChHHHHHhCHHHHHHHHHHC--CCCEEEEEEeecCCcHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999997521 28999999999999999995543
No 23
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=99.51 E-value=1.5e-14 Score=139.00 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=64.3
Q ss_pred CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCC----HHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093 342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFS----EEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR 417 (434)
Q Consensus 342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g----~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~ 417 (434)
++||||||+++.+++++++++++++++++|+|.++|.++| ..+++.| ++++++||+|+|+|||||||+++++
T Consensus 1 ~~L~vALD~~~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l----~~~~~~I~~D~K~~Dig~t~~~~~~ 76 (226)
T PF00215_consen 1 SKLQVALDPTDLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEEL----KERGKPIFLDLKLGDIGNTVARYAE 76 (226)
T ss_dssp -EEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHH----HHTTSEEEEEEEE-SSHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHH----HHhcCCEeeeeeecccchHHHHHHH
Confidence 4799999999999999999999999999999999999999 6666666 4578999999999999999999996
No 24
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=99.48 E-value=8.9e-15 Score=136.38 Aligned_cols=109 Identities=35% Similarity=0.542 Sum_probs=85.7
Q ss_pred CccccCCCCCCcccccCCCCCccccCCCCCcccccccccCCCCeecEEEcCCccc-------------------------
Q psy4093 2 LSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFC------------------------- 56 (434)
Q Consensus 2 ~~~~~~~~~~~~~e~~g~~EGDi~l~~~~rng~~~~~~rWPn~~VpY~I~~~~~c------------------------- 56 (434)
+..|++.++++|.|... +.|.+.- ....|+++...|. ++..+-.+... |
T Consensus 24 ~~~w~~~TcIrF~~~~~--~~~~I~f-~~~~Gc~S~vG~~-~~~q~i~l~~~--c~~~g~v~HE~~HalG~~HEh~R~DR 97 (180)
T cd04280 24 MREIESNTCIRFVPRTT--EKDYIRI-VKGSGCWSYVGRV-GGRQVVSLGSG--CFSLGTIVHELMHALGFYHEQSRPDR 97 (180)
T ss_pred HHHHHhCCcceEEECCC--CCcEEEE-EcCCCcceecCcc-CCceeEEeCCC--cCcCchhHHHHHHHhcCcchhccccc
Confidence 36799999999999876 5554432 2237888877766 44445555432 2
Q ss_pred --------------ccccccccCCCCcccCccccccceecccchhhhccCCCccccccch----hchhhhHHHhhhcc
Q psy4093 57 --------------TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHFV----MAQNVLWSIIILKL 116 (434)
Q Consensus 57 --------------~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g~~Ti~~~~~----igqr~~~si~dlKl 116 (434)
.++||+|++...+++||.||||+|||||++++|+++|++||.|+.. +|++..+|..|+|.
T Consensus 98 D~yv~i~~~ni~~~~~~nf~~~~~~~~~~~~~~YDy~SiMhY~~~~fs~~~~~ti~~~~~~~~~~g~~~~~S~~D~~~ 175 (180)
T cd04280 98 DDYVTINWENIQPGYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGKPTIVPKDPGYQIIGQREGLSFLDIKK 175 (180)
T ss_pred CCeEEEeecccChhHHHHhhhcCcccccccCCcCCcceEeccCCcccccCCCceEEECCchhhcccCCCCCCHHHHHH
Confidence 5779999999999999999999999999999999999999999863 68999998777654
No 25
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=99.43 E-value=2e-14 Score=134.50 Aligned_cols=107 Identities=31% Similarity=0.400 Sum_probs=80.3
Q ss_pred CccccCCCCCCcccccCCCCCccccCCCCCcccccccccCCCCeecEEEcCCccc-------------------------
Q psy4093 2 LSLWKNRPSLNFWEESGQFEGDIMLEGPERTGVISSIDRWPGGLIPYYIDDDHFC------------------------- 56 (434)
Q Consensus 2 ~~~~~~~~~~~~~e~~g~~EGDi~l~~~~rng~~~~~~rWPn~~VpY~I~~~~~c------------------------- 56 (434)
+++|++.++++|.+... |.|.+.- ....||++...|.. +..+..|... +|
T Consensus 26 ~~~~~~~TCirF~~~~~--~~~yi~~-~~~~gC~S~vG~~g-g~q~i~l~~~-~C~~~G~i~HEl~HaLG~~HEhsRpDR 100 (182)
T cd04283 26 MQEFETLTCVRFVPRTT--ERDYLNI-ESRSGCWSYIGRQG-GRQTVSLQKQ-GCMYKGIIQHELLHALGFYHEQTRSDR 100 (182)
T ss_pred HHHHHhCCceeeEECCC--CCcEEEE-EcCCCceEecCccC-CceeEecCCC-CcCccchHHHHHHHHhCCccccccccc
Confidence 46899999999988753 5565432 34568888777654 3334444321 22
Q ss_pred --------------ccccccccCCCCcccCccccccceecccchhhhccCCCccccccc----hhchhhhHHHhhhcc
Q psy4093 57 --------------TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNGDDTIVPHF----VMAQNVLWSIIILKL 116 (434)
Q Consensus 57 --------------~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g~~Ti~~~~----~igqr~~~si~dlKl 116 (434)
.++||+|++. +++|+||||+|||||++++||++|++||+|+. .+|||..+|..|+|.
T Consensus 101 D~yV~I~~~nI~~~~~~nF~~~~~---~~~~~pYDy~SiMHY~~~afs~~g~~Ti~~~~~~~~~iGqr~~lS~~Di~~ 175 (182)
T cd04283 101 DKYVRINWENIIPDQLYNFDKQDT---NNLGTPYDYSSVMHYGRYAFSINGKPTIVPIPDPNVPIGQRQGMSNLDILR 175 (182)
T ss_pred CceEEEehhhcCchHHhhhhhccc---cccCCcccceeeeccCCcccccCCCCeEEECCcccccccCCCCCCHHHHHH
Confidence 6789999974 46899999999999999999999999999985 489999999777654
No 26
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.39 E-value=2e-12 Score=124.83 Aligned_cols=148 Identities=18% Similarity=0.043 Sum_probs=107.3
Q ss_pred hhhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhH
Q psy4093 112 IILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAIT 190 (434)
Q Consensus 112 ~dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~ 190 (434)
+|+|++ +++....++.+.+ ++|++|+|+-++..|+..+++..++.| ...+|+...+ + ..+++..+ .
T Consensus 68 lDvHLm--~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G---~~~gval~p~-t--~~e~l~~~--l--- 134 (228)
T PTZ00170 68 LDCHLM--VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAG---MKVGVAIKPK-T--PVEVLFPL--I--- 134 (228)
T ss_pred EEEEEC--CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC---CeEEEEECCC-C--CHHHHHHH--H---
Confidence 388888 7788888887777 799999999999888888888777666 3466776655 2 33343320 0
Q ss_pred HHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCcc---chh----hcCCCceEecCcccccCCCCCCCCccCC
Q psy4093 191 LELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAP---SVL----ASNPGLLQLTPGIHLNQTGDNKGQQYNG 263 (434)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~---e~~----~~~~~~l~vtPGIr~~~~~~~~~dQ~~T 263 (434)
... .++.|+-|+... |.+|..+++. +.. ..+.-.+.|.|||++. |
T Consensus 135 --------~~~-------~vD~Vl~m~v~p--G~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~~-----------t 186 (228)
T PTZ00170 135 --------DTD-------LVDMVLVMTVEP--GFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINLE-----------T 186 (228)
T ss_pred --------ccc-------hhhhHHhhhccc--CCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCHH-----------H
Confidence 000 124566555432 6889988862 221 2334567889999985 8
Q ss_pred HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093 264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA 302 (434)
Q Consensus 264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a 302 (434)
+.+++ ++|||++||||+|++++||.++++++++ .+++
T Consensus 187 i~~~~-~aGad~iVvGsaI~~a~d~~~~~~~i~~-~~~~ 223 (228)
T PTZ00170 187 IDIAA-DAGANVIVAGSSIFKAKDRKQAIELLRE-SVQK 223 (228)
T ss_pred HHHHH-HcCCCEEEEchHHhCCCCHHHHHHHHHH-HHHH
Confidence 89999 9999999999999999999999999997 5554
No 27
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.37 E-value=5.5e-13 Score=128.87 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=68.0
Q ss_pred CCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093 341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR 417 (434)
Q Consensus 341 ~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~ 417 (434)
.++||+|+|+++.+++++++++++++++++|+|..+|.++|+++++.|++ +|+.||+|+||||||||++..++
T Consensus 2 ~~~lilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~i~~l~~----~~~~i~~D~Kl~Di~~t~~~~i~ 74 (230)
T PRK00230 2 DDRLIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFTAGGPQFVRELKQ----RGFKVFLDLKLHDIPNTVAKAVR 74 (230)
T ss_pred CCCeEEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHHHHHHHh----cCCCEEEEeehhhccccHHHHHH
Confidence 35899999999999999999999999999999999999999999999964 58999999999999999998644
No 28
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=99.36 E-value=1.9e-13 Score=128.53 Aligned_cols=60 Identities=47% Similarity=0.737 Sum_probs=37.6
Q ss_pred ccccccccCCCCcccCccccccceecccchhhhccCC-Cccccccc-----hhchhhhHHHhhhcc
Q psy4093 57 TERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNG-DDTIVPHF-----VMAQNVLWSIIILKL 116 (434)
Q Consensus 57 ~~~NF~k~~~~~~~~~g~pYDy~SVMhYg~~aFs~~g-~~Ti~~~~-----~igqr~~~si~dlKl 116 (434)
.+.||.+++......+++||||+|||||++++|++++ .+||.++. .+|++..++..|++.
T Consensus 117 ~~~~f~~~~~~~~~~~~~pYD~~SIMHY~~~~~s~~~~~~ti~~~~~~~~~~iG~~~~lS~~D~~~ 182 (191)
T PF01400_consen 117 YKHNFDKYPPSEWSTYGSPYDYGSIMHYSSYAFSKNGSQPTITPKDPKYQETIGQRNRLSFTDIKQ 182 (191)
T ss_dssp SGGGG---SGGGBE-TTS---TT-TT---TTTTBSSTTS-SEEESSTTCTS-GGG-SS--HHHHHH
T ss_pred hhhhhhccccccccccCCCcCccCeecccCcccccCCCCCeEEecCCCCcccccccCCCCHHHHHH
Confidence 5679999998888899999999999999999999998 89999875 578888888777554
No 29
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=99.35 E-value=1.4e-12 Score=129.44 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=68.4
Q ss_pred hHHHHHHhhhcCCcEEEEecCCCHHH----------------HHHHHHHhCCceeEEeEceeeeecCCHH-------HHH
Q psy4093 330 SSTLLDIMVKKKSNLCVALDVTQAKD----------------LLTLTRQLGPHIAVLKTHSDAVRDFSEE-------VQK 386 (434)
Q Consensus 330 ~~~l~~~m~~k~s~LivAlD~~~~~~----------------al~la~~lgp~i~~lKvg~dl~~~~g~~-------~v~ 386 (434)
..+|.+.++++.+ |||.||- +.+. .+++++++++++|++|+|+++|..+|++ +++
T Consensus 3 ~~~l~~~~~~~~~-lcvGlDP-~~~~l~~~~~~~~~~~~~~f~~~ivd~~~~~v~~vK~gla~f~~~G~~G~~~l~~~i~ 80 (278)
T PRK00125 3 IDRLREAVARRGS-LCVGLDP-HPSLLPAWGLSGDADGLFEFCRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIA 80 (278)
T ss_pred HHHHHHHHHhcCC-EEEEECC-ChHhcccccccccHHHHHHHHHHHHHhcCCcccEEeccHHHHHhcCchhhhHHHHHHH
Confidence 3566677777777 9999996 3222 4688999999999999999999999988 444
Q ss_pred HHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093 387 ELTALAKQHEFLRSRNGWFSPILSSFSLRFRD 418 (434)
Q Consensus 387 ~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~ 418 (434)
.| ++.|++||+|+|+|||||||+...++
T Consensus 81 ~l----~~~g~~VilD~K~~DI~nTv~~ya~a 108 (278)
T PRK00125 81 YL----REAGVLVIADAKRGDIGSTAEAYAKA 108 (278)
T ss_pred HH----HHCCCcEEEEeecCChHHHHHHHHHH
Confidence 44 45799999999999999999987765
No 30
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=99.30 E-value=3.3e-12 Score=121.45 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=67.7
Q ss_pred hcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHh
Q psy4093 339 KKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416 (434)
Q Consensus 339 ~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~ 416 (434)
.|+++||||||+++.++++++++++++++|++|+|..++.++|++++++|++ . ..+|+|+|+|||+||....+
T Consensus 1 ~~~~~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~ir~----~-~~i~~D~k~~di~~~~~~~~ 73 (215)
T PRK13813 1 EKDSRIILALDVTDRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEELKR----Y-APVIADLKVADIPNTNRLIC 73 (215)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHHHh----c-CCEEEEeeccccHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999964 2 48999999999999998875
No 31
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.29 E-value=9.3e-12 Score=128.78 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=105.7
Q ss_pred ecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHHhcc-ccceEEEcccCCchhHHHHHHHhhhh
Q psy4093 81 VMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDEL 158 (434)
Q Consensus 81 VMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~ 158 (434)
+..-|...|...|..++......|. ...++ |+|++|+|+++ ++.+.+ ++|++|||+.+|.++++.+++.+++.
T Consensus 201 ~iKvG~~L~~~~G~~iVk~Lr~~~~--~~~I~~DLK~~Di~~~v---v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~ 275 (391)
T PRK13307 201 IIEAGTPLIKKFGLEVISKIREVRP--DAFIVADLKTLDTGNLE---ARMAADATADAVVISGLAPISTIEKAIHEAQKT 275 (391)
T ss_pred EEEECHHHHHHhCHHHHHHHHHhCC--CCeEEEEecccChhhHH---HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHc
Confidence 6677788887777666644433321 12234 99999999997 333444 79999999999999999999988776
Q ss_pred CCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCC-CCceEEeCcc----c
Q psy4093 159 GEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPG-LIAGLVCQAP----S 233 (434)
Q Consensus 159 ~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~-gv~GvVcs~~----e 233 (434)
| +.++..|.++.+. .+.+.+ +.+.-.. + ..+.. ...+ +.++. +
T Consensus 276 G----ikvgVD~lnp~tp-~e~i~~------------l~~~vD~----------V----llht~vdp~~-~~~~~~kI~~ 323 (391)
T PRK13307 276 G----IYSILDMLNVEDP-VKLLES------------LKVKPDV----------V----ELHRGIDEEG-TEHAWGNIKE 323 (391)
T ss_pred C----CEEEEEEcCCCCH-HHHHHH------------hhCCCCE----------E----EEccccCCCc-ccchHHHHHH
Confidence 5 4455557764211 111111 0000000 0 00000 0000 01111 1
Q ss_pred hhhcCCC-ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 234 VLASNPG-LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 234 ~~~~~~~-~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
.+....+ .+.+.+||+++ |+.+++ ++|||++||||+|++|+||.++++++++
T Consensus 324 ikk~~~~~~I~VdGGI~~e-----------ti~~l~-~aGADivVVGsaIf~a~Dp~~aak~l~~ 376 (391)
T PRK13307 324 IKKAGGKILVAVAGGVRVE-----------NVEEAL-KAGADILVVGRAITKSKDVRRAAEDFLN 376 (391)
T ss_pred HHHhCCCCcEEEECCcCHH-----------HHHHHH-HcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 1122223 46889999976 678999 9999999999999999999999999886
No 32
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.26 E-value=1.6e-11 Score=127.03 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=95.3
Q ss_pred EEEeCCcccC-CCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhhhhccchhhH-HHHHHhhhcCCcEEEEecCCC
Q psy4093 275 LGVVGRGITQ-APDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISS-TLLDIMVKKKSNLCVALDVTQ 352 (434)
Q Consensus 275 ~IVVGR~It~-A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~l~~~m~~k~s~LivAlD~~~ 352 (434)
+||||==|.- +.|-.+..+--++..-.|..+-+..+-|.-.+.. +|.. ..||.+. |..++- ....|+||||+++
T Consensus 108 ~i~~~v~~~~~~~d~~~~~~~ny~at~~ai~~a~~~~p~~~~~~~-~~~~-~~h~~~~~~~~~~~--~~p~L~vALD~~~ 183 (391)
T PRK13307 108 VIVASVFIHPTAKDYNKIYQYNYGATKLAIKRALEGFPDVDKVLY-EKDR-ALHPIMGFKVTRLW--DPPYLQVALDLPD 183 (391)
T ss_pred EEEEEEEcCchhccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHh-hhhc-ccCCccccchhhhc--ccceEEEecCCCC
Confidence 5666655543 4455555554454344444444565555444433 3333 4667432 221111 2467999999999
Q ss_pred HHHHHHHHHHhCCc-eeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHH-HHHhhcC
Q psy4093 353 AKDLLTLTRQLGPH-IAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSF-SLRFRDD 419 (434)
Q Consensus 353 ~~~al~la~~lgp~-i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV-~~a~~~~ 419 (434)
.++|++++++++++ ++++|+|.+||.++|++++++|++.. .++.||+|||+||||||| ......|
T Consensus 184 ~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~--~~~~I~~DLK~~Di~~~vv~~~a~aG 250 (391)
T PRK13307 184 LEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVR--PDAFIVADLKTLDTGNLEARMAADAT 250 (391)
T ss_pred HHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhC--CCCeEEEEecccChhhHHHHHHHhcC
Confidence 99999999999998 88999999999999999999997521 257899999999999995 4555444
No 33
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=98.76 E-value=1.3e-08 Score=97.10 Aligned_cols=146 Identities=27% Similarity=0.257 Sum_probs=94.3
Q ss_pred hhcccCHHHHHHHHHHHhccccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHHH
Q psy4093 113 ILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLE 192 (434)
Q Consensus 113 dlKl~DI~nTv~~~~~~~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~ 192 (434)
|+|..|-|.+.... ++..++|++||-+.+-..+++.+.+.+++.| ..+...|.+..++. +-.+ .
T Consensus 62 D~Kt~D~G~~e~~m--a~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~----~~v~iDl~~~~~~~--~~~~--------~ 125 (217)
T COG0269 62 DLKTADAGAIEARM--AFEAGADWVTVLGAADDATIKKAIKVAKEYG----KEVQIDLIGVWDPE--QRAK--------W 125 (217)
T ss_pred eeeecchhHHHHHH--HHHcCCCEEEEEecCCHHHHHHHHHHHHHcC----CeEEEEeecCCCHH--HHHH--------H
Confidence 99999999885553 4455899999999999999999999998776 35777787632222 1111 1
Q ss_pred HHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccc----hhh-cCC-CceEecCcccccCCCCCCCCccCCHHH
Q psy4093 193 LKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS----VLA-SNP-GLLQLTPGIHLNQTGDNKGQQYNGPTD 266 (434)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e----~~~-~~~-~~l~vtPGIr~~~~~~~~~dQ~~TP~~ 266 (434)
|++++...-. +++...+. ..|. ..+.+ .+. ... -.+.|+.||.+. +...
T Consensus 126 l~~~gvd~~~-----------~H~g~D~q--~~G~-~~~~~~l~~ik~~~~~g~~vAVaGGI~~~-----------~i~~ 180 (217)
T COG0269 126 LKELGVDQVI-----------LHRGRDAQ--AAGK-SWGEDDLEKIKKLSDLGAKVAVAGGITPE-----------DIPL 180 (217)
T ss_pred HHHhCCCEEE-----------EEecccHh--hcCC-CccHHHHHHHHHhhccCceEEEecCCCHH-----------HHHH
Confidence 2222222111 01111100 0011 01111 111 111 245788999986 5678
Q ss_pred HHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHH
Q psy4093 267 VITLRGADLGVVGRGITQAPDPVEAARRYKEVMW 300 (434)
Q Consensus 267 Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~ 300 (434)
.+ ..|+|++||||.||.|.||.++|++++++.+
T Consensus 181 ~~-~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 181 FK-GIGADIVIVGRAITGAKDPAEAARKFKEEID 213 (217)
T ss_pred Hh-cCCCCEEEECchhcCCCCHHHHHHHHHHHHh
Confidence 88 8999999999999999999999999998554
No 34
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.65 E-value=4.7e-08 Score=92.10 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=68.1
Q ss_pred cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeeecCCCCcchhH-HHHHhhcCc
Q psy4093 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSRNGWFSPILSS-FSLRFRDDK 420 (434)
Q Consensus 343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFlDlKf~DIpnT-V~~a~~~~~ 420 (434)
+||||||+++.++++++++.+++.++++|+|..++..+|++.++.|++ ++ ++.|+.|+|++|++++ +..+++.|-
T Consensus 1 ~l~~alD~~~~~~a~~~~~~l~~~v~~iev~~~l~~~~g~~~i~~l~~---~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga 77 (206)
T TIGR03128 1 KLQLALDLLDIEEALELAEKVADYVDIIEIGTPLIKNEGIEAVKEMKE---AFPDRKVLADLKTMDAGEYEAEQAFAAGA 77 (206)
T ss_pred CeEEEecCCCHHHHHHHHHHcccCeeEEEeCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEeeccchHHHHHHHHHcCC
Confidence 589999999999999999999999999999999999999999999864 33 7899999999999998 777777764
Q ss_pred c
Q psy4093 421 T 421 (434)
Q Consensus 421 ~ 421 (434)
.
T Consensus 78 d 78 (206)
T TIGR03128 78 D 78 (206)
T ss_pred C
Confidence 3
No 35
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.44 E-value=2.6e-07 Score=86.43 Aligned_cols=126 Identities=25% Similarity=0.279 Sum_probs=81.1
Q ss_pred hhcccCHHHHHHHHHHH-hccccceEEEcccCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHhhcchhhHH
Q psy4093 113 ILKLADIGAAVGHQFRL-IGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITL 191 (434)
Q Consensus 113 dlKl~DI~nTv~~~~~~-~~~~~d~vTvH~~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~ 191 (434)
|+|+.|++++.. +. ...++|++++|...+.++++.+.+..++.| . .++++.++.. +..+..+
T Consensus 59 ~~~v~~~~~~~~---~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~-~~~v~~~~~~---t~~e~~~-------- 121 (202)
T cd04726 59 DLKTADAGALEA---EMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--K-EVQVDLIGVE---DPEKRAK-------- 121 (202)
T ss_pred EEEeccccHHHH---HHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--C-eEEEEEeCCC---CHHHHHH--------
Confidence 899999987632 33 344899999999988877888888776554 2 3344334431 2222111
Q ss_pred HHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEE-------------eCccchh---hcCCCceEecCcccccCCCC
Q psy4093 192 ELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV-------------CQAPSVL---ASNPGLLQLTPGIHLNQTGD 255 (434)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvV-------------cs~~e~~---~~~~~~l~vtPGIr~~~~~~ 255 (434)
+... +++-+. ++....+ ...+-.+.+++||++.
T Consensus 122 -------------------------~~~~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~---- 170 (202)
T cd04726 122 -------------------------LLKL--GVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPD---- 170 (202)
T ss_pred -------------------------HHHC--CCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHH----
Confidence 1110 122221 1112222 1134567889999975
Q ss_pred CCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHH
Q psy4093 256 NKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARR 294 (434)
Q Consensus 256 ~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~ 294 (434)
+..+++ ++|||.+|||++|++++||.+++++
T Consensus 171 -------~i~~~~-~~Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 171 -------TLPEFK-KAGADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred -------HHHHHH-hcCCCEEEEeehhcCCCCHHHHHhc
Confidence 678999 9999999999999999999988764
No 36
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.44 E-value=2.4e-06 Score=80.46 Aligned_cols=160 Identities=20% Similarity=0.223 Sum_probs=91.8
Q ss_pred ecccchhhhccCCCccccccchhchhhhHHHh-hhcccCHHHHHHHHHHH-hccccceEEEcccCCchhHHHHHHHhhhh
Q psy4093 81 VMHYSRKAFSKNGDDTIVPHFVMAQNVLWSII-ILKLADIGAAVGHQFRL-IGEWAHLVTVHSIAGPGPLQEIQRISDEL 158 (434)
Q Consensus 81 VMhYg~~aFs~~g~~Ti~~~~~igqr~~~si~-dlKl~DI~nTv~~~~~~-~~~~~d~vTvH~~~G~~ml~~a~~~~~~~ 158 (434)
+...+...|...|.+.+....... ....+. |+|+.|+++. .++. ...++|++++|+..+...+..+.+..++.
T Consensus 27 ~iev~~~l~~~~g~~~i~~l~~~~--~~~~i~~d~k~~d~~~~---~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~ 101 (206)
T TIGR03128 27 IIEIGTPLIKNEGIEAVKEMKEAF--PDRKVLADLKTMDAGEY---EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKH 101 (206)
T ss_pred EEEeCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEeeccchHH---HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHc
Confidence 344444455555554443332211 112233 9999999976 2333 34479999999998876777777777655
Q ss_pred CCCCceEEEEEeCCCCCCChHHHHhhcchhhHHHHHhhhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCc-------
Q psy4093 159 GEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA------- 231 (434)
Q Consensus 159 ~~~~~v~~v~~lss~~sl~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~------- 231 (434)
| +.++..+.++... .+ .+..+ ... |++-+-..+
T Consensus 102 g----~~~~~~~~~~~t~-~~--------------------------------~~~~~-~~~--g~d~v~~~pg~~~~~~ 141 (206)
T TIGR03128 102 G----KEVQVDLINVKDK-VK--------------------------------RAKEL-KEL--GADYIGVHTGLDEQAK 141 (206)
T ss_pred C----CEEEEEecCCCCh-HH--------------------------------HHHHH-HHc--CCCEEEEcCCcCcccC
Confidence 4 3344444332111 01 11111 111 223221110
Q ss_pred ----c-chh---hcCCC-ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 232 ----P-SVL---ASNPG-LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 232 ----~-e~~---~~~~~-~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
. ... ..-+. .+.++.||.+. ++.+.+ ++|+|.++|||.|++++||.++++++++
T Consensus 142 ~~~~~~~i~~l~~~~~~~~i~v~GGI~~~-----------n~~~~~-~~Ga~~v~vGsai~~~~d~~~~~~~l~~ 204 (206)
T TIGR03128 142 GQNPFEDLQTILKLVKEARVAVAGGINLD-----------TIPDVI-KLGPDIVIVGGAITKAADPAEAARQIRK 204 (206)
T ss_pred CCCCHHHHHHHHHhcCCCcEEEECCcCHH-----------HHHHHH-HcCCCEEEEeehhcCCCCHHHHHHHHHh
Confidence 0 001 11112 23457888764 578999 9999999999999999999999999875
No 37
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=98.43 E-value=5.4e-08 Score=91.94 Aligned_cols=49 Identities=24% Similarity=0.266 Sum_probs=39.5
Q ss_pred ccccccCCCCcccCccccccceecccc-hhhhccCCCccccccchhchhhhHHHhhhcc
Q psy4093 59 RNFKKYPPSEITDFGVGYDFDSVMHYS-RKAFSKNGDDTIVPHFVMAQNVLWSIIILKL 116 (434)
Q Consensus 59 ~NF~k~~~~~~~~~g~pYDy~SVMhYg-~~aFs~~g~~Ti~~~~~igqr~~~si~dlKl 116 (434)
.||+|++.. ..++.||||+|||||+ +++|+++|++| +++..+|..|+++
T Consensus 143 ~~f~~~~~~--~~~~~~yD~~SIMHY~~~~~~t~~g~~t-------~~~~~lS~~D~~~ 192 (198)
T cd04327 143 NVFAKLDDG--DVAYSPYDPDSIMHYPFPGSLTLDGEEV-------PPNRTLSDKDKAF 192 (198)
T ss_pred hhhhccccc--cccCCCCCcHHHHcCCCcHHhhcCCccc-------CCCCCCCHHHHHH
Confidence 789998753 4589999999999999 89999999887 4556677666443
No 38
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.42 E-value=3.5e-07 Score=85.55 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=65.8
Q ss_pred cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHH-HHHhhcC
Q psy4093 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSF-SLRFRDD 419 (434)
Q Consensus 343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV-~~a~~~~ 419 (434)
.||+|+|+++.++++++++.+.+.+.++|+|..++..+|+++++.+++. ..+++|+.|+|++|++++. ..+...|
T Consensus 2 ~~~~a~d~~~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~--~~~~~i~~~~~v~~~~~~~~~~~~~aG 77 (202)
T cd04726 2 LLQVALDLLDLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREA--FPDKIIVADLKTADAGALEAEMAFKAG 77 (202)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHH--CCCCEEEEEEEeccccHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999998642 1489999999999999995 4445544
No 39
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.69 E-value=0.00023 Score=74.96 Aligned_cols=44 Identities=30% Similarity=0.538 Sum_probs=38.0
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+.+..||.++ +..+++ ++|||.++|||.|++++||.++++++++
T Consensus 165 I~a~GGI~~~-----------n~~~~l-~aGAdgv~vGsaI~~~~d~~~~~~~l~~ 208 (430)
T PRK07028 165 IAVAGGLDAE-----------TAAKAV-AAGADIVIVGGNIIKSADVTEAARKIRE 208 (430)
T ss_pred EEEECCCCHH-----------HHHHHH-HcCCCEEEEChHHcCCCCHHHHHHHHHH
Confidence 4567788764 457888 9999999999999999999999999887
No 40
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.45 E-value=0.0017 Score=62.69 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=40.6
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE 301 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~ 301 (434)
+.+..||.+. +..+.+ ++|||.+|||++|++++||.++++++++ .|+
T Consensus 177 I~a~GGI~~e-----------~i~~l~-~aGad~vvvgsai~~~~d~~~~~~~l~~-~~~ 223 (229)
T PLN02334 177 IEVDGGVGPS-----------TIDKAA-EAGANVIVAGSAVFGAPDYAEVISGLRA-SVE 223 (229)
T ss_pred EEEeCCCCHH-----------HHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHHH-HHH
Confidence 5678899875 678888 9999999999999999999999999986 443
No 41
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=97.38 E-value=0.00029 Score=75.32 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=64.7
Q ss_pred hHHHHHHhhhcCCcEEEEecCC------------C----HHHHHHHHHHhCCceeEEeEceeeeecCCHHHH---HHHHH
Q psy4093 330 SSTLLDIMVKKKSNLCVALDVT------------Q----AKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQ---KELTA 390 (434)
Q Consensus 330 ~~~l~~~m~~k~s~LivAlD~~------------~----~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v---~~L~~ 390 (434)
..+|.+-+.++++.|||.||-. + .+=...+++.+.+++|.+|..+-+|..+|.+.+ +++.+
T Consensus 4 ~~~l~~~~~~~~s~LcvGLDP~~~~lp~~~~~~~~~~~~~~f~~~ii~at~~~v~a~Kp~~afye~~G~~G~~~l~~~~~ 83 (477)
T PRK05500 4 FDKLTQAIAQNQSLLVVGLDPNPEMMPGRYSSQSLIQQLWTWLKFIIEETADLVCAYKPTLGFYQALGSPGLELLLEVLA 83 (477)
T ss_pred HHHHHHHHHHhCCCEEEEECCChhhChhhcCCcchHHHHHHHHHHHHHHhhCcccEEeccHHHHHhhChHHHHHHHHHHH
Confidence 3466677888999999999951 1 122347789999999999999999999998766 55555
Q ss_pred HHhcCCCeeeecCCCCcchhHHHH
Q psy4093 391 LAKQHEFLRSRNGWFSPILSSFSL 414 (434)
Q Consensus 391 la~k~gf~iFlDlKf~DIpnTV~~ 414 (434)
.++ .|.+|.+|.|.-|| ||.+.
T Consensus 84 ~~~-~~~~vI~DaKrgDI-~T~~~ 105 (477)
T PRK05500 84 AIP-PDIPIILDAKHGDL-NTSTI 105 (477)
T ss_pred Hhc-cCCeEEEEecccCh-HHHHH
Confidence 554 57899999999999 57653
No 42
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.04 E-value=0.003 Score=59.08 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=36.9
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYK 296 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~ 296 (434)
+.+..||+++ +..+++ +.|+|.+||||+|++++||.+++++++
T Consensus 169 i~v~GGI~~e-----------nv~~~~-~~gad~iivgsai~~~~~~~~~~~~~~ 211 (211)
T cd00429 169 IEVDGGINLE-----------TIPLLA-EAGADVLVAGSALFGSDDYAEAIKELR 211 (211)
T ss_pred EEEECCCCHH-----------HHHHHH-HcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence 4567888875 467888 899999999999999999999988763
No 43
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.56 E-value=0.0048 Score=65.00 Aligned_cols=77 Identities=8% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCcEEEEecCCCHHHHHHHHHH-hCCceeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeeecCCCCcchh-HHHHHhh
Q psy4093 341 KSNLCVALDVTQAKDLLTLTRQ-LGPHIAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSRNGWFSPILS-SFSLRFR 417 (434)
Q Consensus 341 ~s~LivAlD~~~~~~al~la~~-lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFlDlKf~DIpn-TV~~a~~ 417 (434)
..+|+||+|+.+.++++++++. +...+-++++|......++.+.+++|.+ ++ +..|+.|.|++|+|+ -|..+..
T Consensus 3 ~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~---~~~~~~ii~D~kl~d~g~~~v~~a~~ 79 (430)
T PRK07028 3 RPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRK---NFPDHTIVADMKTMDTGAIEVEMAAK 79 (430)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHH---HCCCCEEEEEeeeccchHHHHHHHHH
Confidence 6789999999999999999999 6677889988866655666767766653 33 468999999999998 4555555
Q ss_pred cCc
Q psy4093 418 DDK 420 (434)
Q Consensus 418 ~~~ 420 (434)
.|-
T Consensus 80 aGA 82 (430)
T PRK07028 80 AGA 82 (430)
T ss_pred cCC
Confidence 553
No 44
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=96.13 E-value=0.0041 Score=58.32 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=36.1
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRY 295 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i 295 (434)
+.+..||+++ +.++++ +.|+|.+||||+|++++||.++++++
T Consensus 168 i~v~GGI~~e-----------nv~~l~-~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 168 IEVDGGVNDD-----------NARELA-EAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred EEEECCcCHH-----------HHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 4567888875 567888 89999999999999999999998876
No 45
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.013 Score=56.41 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=67.1
Q ss_pred CcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHH-HhhcC
Q psy4093 342 SNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSL-RFRDD 419 (434)
Q Consensus 342 s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~-a~~~~ 419 (434)
..|=||||+++.++|..+++++..++-++=+|--|+.++|.+.|+.|+++. -+..|.-|+|-.|-+++..+ ++.+|
T Consensus 4 p~LQvALD~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~aG 80 (217)
T COG0269 4 PLLQVALDLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFEAG 80 (217)
T ss_pred cceEeeecccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHHcC
Confidence 457899999999999999999999999999999999999999999998743 47899999999999998654 44444
No 46
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.94 E-value=0.0076 Score=57.06 Aligned_cols=43 Identities=28% Similarity=0.381 Sum_probs=36.5
Q ss_pred EecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 243 ~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
.+.-||++. +..+++ +.|+|.+|||+.|++++||.++++++++
T Consensus 174 ~v~GGI~~~-----------nv~~l~-~~GaD~vvvgSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 174 EVDGGINAD-----------NIKECA-EAGADVFVAGSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred EEECCCCHH-----------HHHHHH-HcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 355778764 557777 8999999999999999999999999986
No 47
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=95.71 E-value=0.011 Score=57.33 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=38.6
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+-|-.||..+ |..+.. ++|||.+|+|++|.+++||.++++++++
T Consensus 174 IeVDGGI~~e-----------ti~~l~-~aGaDi~V~GSaiF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 174 LEIDGGVKAD-----------NIGAIA-AAGADTFVAGSAIFNAPDYAQVIAQMRA 217 (223)
T ss_pred EEEECCCCHH-----------HHHHHH-HcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 4667788865 667888 9999999999999999999999999987
No 48
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.50 E-value=0.096 Score=51.83 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=26.6
Q ss_pred HHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093 266 DVITLRGADLGVVGRGITQAPDPVEAARRYK 296 (434)
Q Consensus 266 ~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~ 296 (434)
.+. +.|+|.++||++|++++||.+++++++
T Consensus 228 ~~~-~~Gad~vlVGsaI~~~~dp~~~~~~l~ 257 (260)
T PRK00278 228 RLA-KAGADAVLVGESLMRADDPGAALRELL 257 (260)
T ss_pred HHH-HcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence 445 789999999999999999999988765
No 49
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.40 E-value=0.08 Score=52.73 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=31.8
Q ss_pred CCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 262 NGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 262 ~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
....+|+ ++||.-+++||-|.|++||.+.+++++.
T Consensus 210 ~~v~~ai-~aGa~Gv~~GRNIfQ~~~p~~~~~al~~ 244 (264)
T PRK08227 210 EMCYQAI-DEGASGVDMGRNIFQSEHPVAMIKAVHA 244 (264)
T ss_pred HHHHHHH-HcCCceeeechhhhccCCHHHHHHHHHH
Confidence 4667899 8999999999999999999999998874
No 50
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=95.15 E-value=0.0066 Score=54.77 Aligned_cols=91 Identities=19% Similarity=0.130 Sum_probs=56.3
Q ss_pred CccccCCCCCCcccccCCCCCccccCCC----CCcccccccccCC--C-CeecEEE---cCC--------c---------
Q psy4093 2 LSLWKNRPSLNFWEESGQFEGDIMLEGP----ERTGVISSIDRWP--G-GLIPYYI---DDD--------H--------- 54 (434)
Q Consensus 2 ~~~~~~~~~~~~~e~~g~~EGDi~l~~~----~rng~~~~~~rWP--n-~~VpY~I---~~~--------~--------- 54 (434)
+..|.+.++++|.|....-..||.+... .-+|++.-..+++ . +.|-..- ... .
T Consensus 24 ~~~W~~~~~i~F~e~~~~~~~di~i~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiG 103 (165)
T cd04268 24 IEAWNKAFAIGFKNANDVDPADIRYSVIRWIPYNDGTWSYGPSQVDPLTGEILLARVYLYSSFVEYSGARLRNTAEHELG 103 (165)
T ss_pred HHHHHHHhCcCceeccccCccCceEEEEEeecCCCCccccCCccCCCCCccEEeeEEEEchhHHHHHHHHHHHHHHHHHH
Confidence 3579999999999987655688876522 1356665555552 1 2222211 110 0
Q ss_pred --ccccccccccCCC-CcccCccccccceecccchhhhccC
Q psy4093 55 --FCTERNFKKYPPS-EITDFGVGYDFDSVMHYSRKAFSKN 92 (434)
Q Consensus 55 --~c~~~NF~k~~~~-~~~~~g~pYDy~SVMhYg~~aFs~~ 92 (434)
.+..|++.-.... .+..++.+||+.|||||....|+.+
T Consensus 104 HaLGL~H~~~~~~~~~~~~~~~~~~~~~SvM~y~~~~~~~~ 144 (165)
T cd04268 104 HALGLRHNFAASDRDDNVDLLAEKGDTSSVMDYAPSNFSIQ 144 (165)
T ss_pred HHhcccccCcCCccCCcchhhccCCCCcccCCCCccccccc
Confidence 1244555432221 1367899999999999999999877
No 51
>KOG3111|consensus
Probab=94.90 E-value=0.046 Score=51.93 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=34.6
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY 303 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~ 303 (434)
|...+. ++||++||+|-+|..|.||.++.+.||++-..|.
T Consensus 182 ti~~~a-~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 182 TIDKAA-EAGANMIVAGSAVFGAADPSDVISLLRNSVEKAA 221 (224)
T ss_pred hHHHHH-HcCCCEEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence 666777 8999999999999999999999999998655443
No 52
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=94.57 E-value=0.041 Score=53.25 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=37.4
Q ss_pred EecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 243 ~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
.+--||.+. |..+.+ ++|||.+|+|++|.+++||.++++++++
T Consensus 171 ~vdGGI~~e-----------ni~~l~-~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 171 EIDGGVKVD-----------NIREIA-EAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred EEECCCCHH-----------HHHHHH-HcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 366788864 567888 9999999999999999999999999986
No 53
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=94.47 E-value=0.037 Score=51.87 Aligned_cols=38 Identities=37% Similarity=0.379 Sum_probs=33.3
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA 302 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a 302 (434)
+..+++ +.|||.+++|+.|++++||.++++++++ .|++
T Consensus 173 ~i~~~~-~~Ga~gv~~gs~i~~~~d~~~~~~~l~~-~~~~ 210 (212)
T PRK00043 173 NAPEVL-EAGADGVAVVSAITGAEDPEAAARALLA-AFRA 210 (212)
T ss_pred HHHHHH-HcCCCEEEEeHHhhcCCCHHHHHHHHHH-HHhh
Confidence 557888 8999999999999999999999999986 5654
No 54
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.93 E-value=1.4 Score=43.48 Aligned_cols=38 Identities=34% Similarity=0.497 Sum_probs=32.7
Q ss_pred CCHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHH
Q psy4093 262 NGPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKEVMW 300 (434)
Q Consensus 262 ~TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~ 300 (434)
.||++| + +.|||-++||-+|+.|.||...+++++....
T Consensus 185 ~tpeda~~Am-elGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 185 GTPSDAAQAM-ELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred CCHHHHHHHH-HcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 466655 6 7999999999999999999999999998443
No 55
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.84 E-value=0.82 Score=43.93 Aligned_cols=33 Identities=39% Similarity=0.458 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
..+++ +.||+-+.+||.|.+++||.++++++++
T Consensus 200 ~~~~~-~~Ga~gv~vg~~i~~~~dp~~~~~~~~~ 232 (235)
T cd00958 200 VYDAM-EAGAAGVAVGRNIFQRPDPVAMLRAISA 232 (235)
T ss_pred HHHHH-HcCCcEEEechhhhcCCCHHHHHHHHHH
Confidence 46678 8999999999999999999999998876
No 56
>PRK07695 transcriptional regulator TenI; Provisional
Probab=93.16 E-value=0.092 Score=49.48 Aligned_cols=37 Identities=30% Similarity=0.405 Sum_probs=32.6
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE 301 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~ 301 (434)
+..+++ +.|+|.+.|||.|+.++||.++++++++ .++
T Consensus 162 ~~~~~~-~~Ga~gvav~s~i~~~~~p~~~~~~~~~-~~~ 198 (201)
T PRK07695 162 NTRDVL-AAGVSGIAVMSGIFSSANPYSKAKRYAE-SIK 198 (201)
T ss_pred HHHHHH-HcCCCEEEEEHHHhcCCCHHHHHHHHHH-HHh
Confidence 457888 8999999999999999999999999986 444
No 57
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.12 E-value=2.3 Score=42.03 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=32.6
Q ss_pred CCHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHH
Q psy4093 262 NGPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKEVMW 300 (434)
Q Consensus 262 ~TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~ 300 (434)
.||++| + +.|||-++||-+|+.|.||...+++++....
T Consensus 185 ~tpeda~~Am-elGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 185 GTPSDAAQAM-ELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred CCHHHHHHHH-HcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 466655 6 7999999999999999999999999998443
No 58
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=93.00 E-value=0.13 Score=51.74 Aligned_cols=38 Identities=34% Similarity=0.407 Sum_probs=32.6
Q ss_pred HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy4093 265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYE 304 (434)
Q Consensus 265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~ 304 (434)
..++ +.|||-++||+.|+.+.||.+.++++++ .++.|.
T Consensus 221 a~vm-e~GAdgVaVGSaI~ks~dP~~~akafv~-ai~~~~ 258 (293)
T PRK04180 221 ALMM-QLGADGVFVGSGIFKSGDPEKRARAIVE-ATTHYD 258 (293)
T ss_pred HHHH-HhCCCEEEEcHHhhcCCCHHHHHHHHHH-HHHHcC
Confidence 4557 8999999999999999999999999987 555553
No 59
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=92.24 E-value=0.18 Score=50.71 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=31.5
Q ss_pred HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093 265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY 303 (434)
Q Consensus 265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~ 303 (434)
..++ +.|||-++||+.|+++.||.+.++++++ .++.|
T Consensus 215 a~~m-elGAdGVaVGSaI~ks~dP~~~akafv~-ai~~~ 251 (287)
T TIGR00343 215 ALMM-QLGADGVFVGSGIFKSSNPEKLAKAIVE-ATTHY 251 (287)
T ss_pred HHHH-HcCCCEEEEhHHhhcCCCHHHHHHHHHH-HHHHc
Confidence 4457 8999999999999999999999999987 55443
No 60
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=91.82 E-value=0.14 Score=46.68 Aligned_cols=43 Identities=35% Similarity=0.365 Sum_probs=35.1
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYK 296 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~ 296 (434)
+++..||.+. +..+++ +.|+|.+++|+.|..++||.+++++++
T Consensus 153 v~a~GGi~~~-----------~i~~~~-~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 153 VVAIGGITPE-----------NAAEVL-AAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred EEEECCCCHH-----------HHHHHH-HcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 3555666643 557888 899999999999999999999988775
No 61
>PRK06852 aldolase; Validated
Probab=90.69 E-value=1.3 Score=45.20 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=29.4
Q ss_pred CCHHHHHHH-cCCCEEEeCCcccCCCCH--HHHHHHHHH
Q psy4093 262 NGPTDVITL-RGADLGVVGRGITQAPDP--VEAARRYKE 297 (434)
Q Consensus 262 ~TP~~Ai~~-~GAD~IVVGR~It~A~DP--~~aa~~i~~ 297 (434)
....+|+ + +||.-+++||-|.|++|| .+.+++|..
T Consensus 248 ~~v~~ai-~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~ 285 (304)
T PRK06852 248 KQLYEQI-HISGASGNATGRNIHQKPLDEAVRMCNAIYA 285 (304)
T ss_pred HHHHHHH-HHcCCceeeechhhhcCCCchHHHHHHHHHH
Confidence 4567788 7 999999999999999999 777777764
No 62
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=90.50 E-value=0.19 Score=46.72 Aligned_cols=31 Identities=39% Similarity=0.467 Sum_probs=27.6
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARR 294 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~ 294 (434)
+..+++ +.|+|.++|||.|++++||.+++++
T Consensus 165 ~~~~~~-~~G~~gva~~~~i~~~~dp~~~~~~ 195 (196)
T TIGR00693 165 NAAEVL-AAGADGVAVVSAIMQAADPKAAAKQ 195 (196)
T ss_pred HHHHHH-HcCCCEEEEhHHhhCCCCHHHHHHh
Confidence 456778 8999999999999999999998875
No 63
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=90.17 E-value=0.41 Score=46.92 Aligned_cols=37 Identities=32% Similarity=0.423 Sum_probs=32.9
Q ss_pred cCCHHHHH--HHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 261 YNGPTDVI--TLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 261 ~~TP~~Ai--~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
++||.+|- -+.|||-+-||-+|.+|+||.+-|+.|.+
T Consensus 217 vATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~ 255 (296)
T COG0214 217 VATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVE 255 (296)
T ss_pred cCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHHHH
Confidence 46888882 27899999999999999999999999987
No 64
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=89.04 E-value=0.51 Score=46.08 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=36.4
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+-|-.||+.. |..+.. ++|||.+|+|++|.+++||.+..++++.
T Consensus 182 IeVDGGI~~~-----------ti~~l~-~aGaD~~V~GSalF~~~d~~~~i~~l~~ 225 (228)
T PRK08091 182 ISIDGSMTLE-----------LASYLK-QHQIDWVVSGSALFSQGELKTTLKEWKS 225 (228)
T ss_pred EEEECCCCHH-----------HHHHHH-HCCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 3455778764 667888 9999999999999999999988887775
No 65
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.87 E-value=0.98 Score=45.01 Aligned_cols=34 Identities=32% Similarity=0.266 Sum_probs=29.7
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
--.+|+ ++||--+++||-|.|+++|.+.++.|..
T Consensus 222 ~~~~ai-~aGa~G~~~GRNifQ~~~p~~m~~Ai~~ 255 (265)
T COG1830 222 MVTAAI-EAGAMGVAVGRNIFQHEDPEAMVKAIQA 255 (265)
T ss_pred HHHHHH-HccCcchhhhhhhhccCChHHHHHHHHH
Confidence 446788 8999999999999999999998777765
No 66
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=88.67 E-value=2.5 Score=48.05 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=79.7
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcc---cccccChhhhhhhc-------cch----
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKEN---SRIVTPFETRKADV-------KCR---- 328 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~---~~~~~~~~~r~~~~-------~~~---- 328 (434)
+..+++ +.||+.|-|.+.|.+++||.++++++++ .|+.+.++-++-+ ......|..|.... +-|
T Consensus 179 ~~~~~~-~~Ga~giAvisai~~a~d~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLtIaGsD~sggA 256 (755)
T PRK09517 179 NAAELA-ATGIDGLCVVSAIMAAANPAAAARELRT-AFQPTRSPETQTELSQTELQGAFVNSPSAPRVLSIAGTDPTGGA 256 (755)
T ss_pred HHHHHH-HcCCCEEEEehHhhCCCCHHHHHHHHHH-HHHHhhccccccccccccccccccccCCCCeEEEEeccCCCcHH
Confidence 346677 8999999999999999999999999998 7998887765221 22344555554321 000
Q ss_pred -hhHHHHHHhhhc-------------C-CcEEEEecCCCHHHHHHHHHHhCC--ceeEEeEceeeeecCCHHHHHHHHHH
Q psy4093 329 -ISSTLLDIMVKK-------------K-SNLCVALDVTQAKDLLTLTRQLGP--HIAVLKTHSDAVRDFSEEVQKELTAL 391 (434)
Q Consensus 329 -~~~~l~~~m~~k-------------~-s~LivAlD~~~~~~al~la~~lgp--~i~~lKvg~dl~~~~g~~~v~~L~~l 391 (434)
+..-| +++..- | +.=+..+-..+.+-+.+-.+.+-. .+-.+|||+ | .+.+.++.+.+.
T Consensus 257 Gi~aDl-kt~~alg~~~~~viTaltaQn~~~v~~v~~~~~~~v~~Ql~~~~~d~~~~aiKiGm-L---~s~e~v~~i~~~ 331 (755)
T PRK09517 257 GIQADL-KSIAAGGGYGMCVVTALVAQNTHGVNTIHTPPLTFLEEQLEAVFSDVTVDAVKLGM-L---GSADTVDLVASW 331 (755)
T ss_pred HHHHHH-HHHHHcCCcccchheeEeeEcccceeEEeeCCHHHHHHHHHHHHcCCCCCEEEECC-C---CCHHHHHHHHHH
Confidence 11111 111110 1 111223333344444444444433 567899997 3 346777777776
Q ss_pred HhcC-CCeeeecC
Q psy4093 392 AKQH-EFLRSRNG 403 (434)
Q Consensus 392 a~k~-gf~iFlDl 403 (434)
.+++ +.+|.+|=
T Consensus 332 l~~~~~~~vVlDP 344 (755)
T PRK09517 332 LGSHEHGPVVLDP 344 (755)
T ss_pred HHhCCCCCEEEec
Confidence 7664 45688884
No 67
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=88.19 E-value=0.79 Score=44.78 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=36.0
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCc-ccC-CCCHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRG-ITQ-APDPVEAARRYKE 297 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~-It~-A~DP~~aa~~i~~ 297 (434)
+-|-.||+.. |..++. ++|||.+|+|++ |.+ ++||.+..+.+++
T Consensus 172 IeVDGGI~~~-----------~i~~~~-~aGad~~V~Gss~iF~~~~d~~~~i~~l~~ 217 (229)
T PRK09722 172 IEVDGSCNQK-----------TYEKLM-EAGADVFIVGTSGLFNLDEDIDEAWDIMTA 217 (229)
T ss_pred EEEECCCCHH-----------HHHHHH-HcCCCEEEEChHHHcCCCCCHHHHHHHHHH
Confidence 3556778864 667888 999999999987 987 5789999999886
No 68
>PRK08005 epimerase; Validated
Probab=87.45 E-value=0.62 Score=44.91 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=33.8
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRY 295 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i 295 (434)
+-|-.||+.. |..+.+ ++|||.+|+|++|.+++||.+..+++
T Consensus 166 I~VDGGI~~~-----------~i~~l~-~aGad~~V~GsaiF~~~d~~~~~~~~ 207 (210)
T PRK08005 166 CWADGGITLR-----------AARLLA-AAGAQHLVIGRALFTTANYDVTLSQF 207 (210)
T ss_pred EEEECCCCHH-----------HHHHHH-HCCCCEEEEChHhhCCCCHHHHHHHH
Confidence 4566777754 667888 99999999999999998988776654
No 69
>PRK14057 epimerase; Provisional
Probab=86.71 E-value=0.91 Score=45.07 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=35.9
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+-|-.||+.+ |..+.. ++|||.+|+|++|..++|+.+..+++++
T Consensus 196 IeVDGGI~~~-----------ti~~l~-~aGad~~V~GSalF~~~d~~~~i~~l~~ 239 (254)
T PRK14057 196 IVIDGSLTQD-----------QLPSLI-AQGIDRVVSGSALFRDDRLVENTRSWRA 239 (254)
T ss_pred EEEECCCCHH-----------HHHHHH-HCCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 3455677764 677888 9999999999999999899888777764
No 70
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=86.25 E-value=6.4 Score=38.98 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=30.7
Q ss_pred EEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHH-HHHHHHHhcCCCeeee
Q psy4093 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQ-KELTALAKQHEFLRSR 401 (434)
Q Consensus 344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v-~~L~~la~k~gf~iFl 401 (434)
+.+++|..+++.+.+-.+. |.+++.+-+..-. .++.++++++|..+.+
T Consensus 77 ~plSIDT~~~~v~e~al~~----------G~~iINdisg~~~~~~~~~l~~~~~~~vV~ 125 (257)
T cd00739 77 VLISVDTFRAEVARAALEA----------GADIINDVSGGSDDPAMLEVAAEYGAPLVL 125 (257)
T ss_pred CcEEEeCCCHHHHHHHHHh----------CCCEEEeCCCCCCChHHHHHHHHcCCCEEE
Confidence 5678999999888876653 4666665321111 3445556778877766
No 71
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=85.89 E-value=0.87 Score=43.96 Aligned_cols=34 Identities=35% Similarity=0.423 Sum_probs=31.5
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+..+++ +.|+|.|-|-|.|+.++||.++++++++
T Consensus 171 nv~~v~-~~Ga~gVAvvsai~~a~d~~~a~~~~~~ 204 (211)
T COG0352 171 NVPEVL-EAGADGVAVVSAITSAADPAAAAKALRN 204 (211)
T ss_pred HHHHHH-HhCCCeEEehhHhhcCCCHHHHHHHHHH
Confidence 457788 9999999999999999999999999987
No 72
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=85.03 E-value=1.1 Score=45.18 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=31.3
Q ss_pred HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093 265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEA 302 (434)
Q Consensus 265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a 302 (434)
.+++ +.|||-++||+.|+.++||.+.++++++ .++.
T Consensus 212 ~~v~-e~GAdgVaVGSAI~~a~dP~~~tk~f~~-ai~~ 247 (283)
T cd04727 212 ALMM-QLGADGVFVGSGIFKSENPEKRARAIVE-AVTH 247 (283)
T ss_pred HHHH-HcCCCEEEEcHHhhcCCCHHHHHHHHHH-HHHh
Confidence 5667 8999999999999999999999999987 4443
No 73
>PRK04302 triosephosphate isomerase; Provisional
Probab=84.06 E-value=3.3 Score=39.80 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCHHHHHH--HcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 262 NGPTDVIT--LRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 262 ~TP~~Ai~--~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
.+|+++.. +.|+|-++||+.|++++||.+..+++.+
T Consensus 183 ~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~ 220 (223)
T PRK04302 183 STGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVS 220 (223)
T ss_pred CCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHh
Confidence 35655431 6899999999999999999998877654
No 74
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=83.61 E-value=1.6 Score=43.25 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=37.9
Q ss_pred eEecCcccccCCCCCCCCc-cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQ-YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ-~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+...-||+.. + -+| .....+++ ++||+-+.+||.|.+++||.+++++++.
T Consensus 199 V~a~GGi~~~----~-~~~~l~~v~~~~-~aGA~Gis~gr~i~~~~~p~~~~~~l~~ 249 (267)
T PRK07226 199 VVIAGGPKTD----T-DREFLEMVRDAM-EAGAAGVAVGRNVFQHEDPEAITRAISA 249 (267)
T ss_pred EEEEeCCCCC----C-HHHHHHHHHHHH-HcCCcEEehhhhhhcCCCHHHHHHHHHH
Confidence 4556677743 0 112 23467888 9999999999999999999999988876
No 75
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=83.31 E-value=9.7 Score=37.66 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=16.9
Q ss_pred CHHHHHHHcCCCEEEeCCcccC
Q psy4093 263 GPTDVITLRGADLGVVGRGITQ 284 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~ 284 (434)
+..+++ +.|||.+|||..|.+
T Consensus 212 ~~~~~~-~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 212 QVKQAI-DAGADGVIVGSAIVK 232 (256)
T ss_pred HHHHHH-HcCCCEEEECHHHHH
Confidence 335556 789999999999976
No 76
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=82.64 E-value=1.2 Score=43.66 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=31.7
Q ss_pred CCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 262 NGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 262 ~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
....+++ ++||+-+.+||.|++++||.+++++++.
T Consensus 211 ~~i~~~~-~aGa~Gia~g~~i~~~~dp~~~~~~l~~ 245 (258)
T TIGR01949 211 QMIKDAM-EAGAAGVAVGRNIFQHDDPVGITKAVCK 245 (258)
T ss_pred HHHHHHH-HcCCcEEehhhHhhcCCCHHHHHHHHHH
Confidence 3567888 8999999999999999999999998886
No 77
>KOG1606|consensus
Probab=80.99 E-value=2.5 Score=40.99 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=32.8
Q ss_pred cCCHHHHH--HHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 261 YNGPTDVI--TLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 261 ~~TP~~Ai--~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+.||.+|. -+.|+|-+-||-+|..+.||...++.|.+
T Consensus 218 vaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVq 256 (296)
T KOG1606|consen 218 VATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQ 256 (296)
T ss_pred cCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHHHH
Confidence 57898882 27899999999999999999999999987
No 78
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=80.40 E-value=1.2 Score=42.25 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=26.2
Q ss_pred HHHHHHHcCCCEEEeCCcccCCCCHHHHHHH
Q psy4093 264 PTDVITLRGADLGVVGRGITQAPDPVEAARR 294 (434)
Q Consensus 264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~ 294 (434)
..+++ +.|||.++||+.|+++.||.+++++
T Consensus 187 i~~~~-~~Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 187 VKRLA-EAGADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred HHHHH-HcCCCEEEECHHHcCCCCHHHHHHh
Confidence 34557 8999999999999999999998874
No 79
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.36 E-value=2 Score=41.52 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=30.9
Q ss_pred HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHH
Q psy4093 265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWE 301 (434)
Q Consensus 265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~ 301 (434)
.+++ +.|||.|-|-+.|.+++||.++++++++ .++
T Consensus 179 ~~~~-~~GA~giAvisai~~~~dp~~a~~~~~~-~~~ 213 (221)
T PRK06512 179 VEVA-ETGAEFVALERAVFDAHDPPLAVAQANA-LLD 213 (221)
T ss_pred HHHH-HhCCCEEEEhHHhhCCCCHHHHHHHHHH-HHh
Confidence 5677 9999999999999999999999998886 443
No 80
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.95 E-value=12 Score=37.69 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=21.0
Q ss_pred HHHHHHHc-CCCEEEeCCcccCCCCHHHH
Q psy4093 264 PTDVITLR-GADLGVVGRGITQAPDPVEA 291 (434)
Q Consensus 264 P~~Ai~~~-GAD~IVVGR~It~A~DP~~a 291 (434)
-.+++ +. |+|+|-+||+.+..+|-...
T Consensus 296 a~~~l-~~g~aD~V~igR~~ladP~l~~k 323 (327)
T cd02803 296 AEEIL-AEGKADLVALGRALLADPDLPNK 323 (327)
T ss_pred HHHHH-HCCCCCeeeecHHHHhCccHHHH
Confidence 45667 66 89999999999987775543
No 81
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=76.87 E-value=27 Score=34.68 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=71.3
Q ss_pred HhccccceEEEcccC-CchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHH---hhcchhhHHHHHhhhccCCCCC
Q psy4093 129 LIGEWAHLVTVHSIA-GPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYT---QVGFKAITLELKKYLCNNQVLP 204 (434)
Q Consensus 129 ~~~~~~d~vTvH~~~-G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~---~~g~~~~~~~~~~~~~~~~~~~ 204 (434)
+..-+||.|-+++.. +.+-++...+.+...| +=.|.+..+ .+++. ..|.. =+|+|++...
T Consensus 120 a~~~GADavLLI~~~L~~~~l~~l~~~a~~lG----le~LVEVh~-----~~El~~a~~~ga~-------iiGINnRdL~ 183 (247)
T PRK13957 120 ARAFGASAILLIVRILTPSQIKSFLKHASSLG----MDVLVEVHT-----EDEAKLALDCGAE-------IIGINTRDLD 183 (247)
T ss_pred HHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcC----CceEEEECC-----HHHHHHHHhCCCC-------EEEEeCCCCc
Confidence 344578888887654 4557888888877665 334555443 22322 11111 1456666555
Q ss_pred CCCchHHHHHHHHhhcCCCCceEEeCccchhhcCCCceEec-CcccccCCCCCCCCccCCHHHH--HHHcCCCEEEeCCc
Q psy4093 205 KCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLT-PGIHLNQTGDNKGQQYNGPTDV--ITLRGADLGVVGRG 281 (434)
Q Consensus 205 ~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~~~~~~~l~vt-PGIr~~~~~~~~~dQ~~TP~~A--i~~~GAD~IVVGR~ 281 (434)
.+..+.+...+++.... .+.+.|. -||+ ||+++ + ..++|-+.||.+
T Consensus 184 t~~vd~~~~~~L~~~ip-----------------~~~~~IsESGI~-------------t~~d~~~l-~~~~davLvG~~ 232 (247)
T PRK13957 184 TFQIHQNLVEEVAAFLP-----------------PNIVKVGESGIE-------------SRSDLDKF-RKLVDAALIGTY 232 (247)
T ss_pred cceECHHHHHHHHhhCC-----------------CCcEEEEcCCCC-------------CHHHHHHH-HHhCCEEEECHH
Confidence 55555555555554332 1222222 4444 66666 4 335999999999
Q ss_pred ccCCCCHHHHHHHH
Q psy4093 282 ITQAPDPVEAARRY 295 (434)
Q Consensus 282 It~A~DP~~aa~~i 295 (434)
+-.++||.++.+++
T Consensus 233 lm~~~d~~~~~~~l 246 (247)
T PRK13957 233 FMEKKDIRKAWLSL 246 (247)
T ss_pred HhCCCCHHHHHHHh
Confidence 99999999887654
No 82
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=76.85 E-value=1.1 Score=39.45 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=29.5
Q ss_pred CccccCCCCCCcccccCCCCCccccCCC-CCc-ccc-cccccCCCCeecEEE
Q psy4093 2 LSLWKNRPSLNFWEESGQFEGDIMLEGP-ERT-GVI-SSIDRWPGGLIPYYI 50 (434)
Q Consensus 2 ~~~~~~~~~~~~~e~~g~~EGDi~l~~~-~rn-g~~-~~~~rWPn~~VpY~I 50 (434)
++.|++.++++|.|... +.|+.+... ..+ |++ .-.+ .|++.++..+
T Consensus 32 ~~~w~~~t~i~F~e~~~--~ad~~I~f~~~~~~g~~~a~~g-~~~g~~~~~~ 80 (140)
T smart00235 32 FAEWSDVTCLRFVERTS--TADIYISFGKGDGSGCTLSHAG-RPGGDQHFSL 80 (140)
T ss_pred HHHHhcCCeeEEEECCC--CCCeEEEEEECCCCCcceeeee-cCCCceEEEc
Confidence 46799999999998765 567766532 222 664 4333 3466666666
No 83
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=76.51 E-value=3.3 Score=40.32 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=33.9
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+-|-.||... |..++. ++|||++|+|+.|..++|-.+..+.++.
T Consensus 172 IeVDGGI~~~-----------t~~~~~-~AGad~~VaGSalF~~~d~~~~i~~~~~ 215 (220)
T COG0036 172 IEVDGGINLE-----------TIKQLA-AAGADVFVAGSALFGADDYKATIRELRG 215 (220)
T ss_pred EEEeCCcCHH-----------HHHHHH-HcCCCEEEEEEEEeCCccHHHHHHHHHH
Confidence 4556777764 778888 9999999999999999995555554443
No 84
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=75.50 E-value=3 Score=43.21 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=30.2
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+..+++ +.|+|.|.|++.|.+++||.++++.+.+
T Consensus 307 ni~~l~-~~Ga~gVAvisaI~~a~dp~~~~~~l~~ 340 (347)
T PRK02615 307 NIPEVL-QAGAKRVAVVRAIMGAEDPKQATQELLK 340 (347)
T ss_pred HHHHHH-HcCCcEEEEeHHHhCCCCHHHHHHHHHH
Confidence 445667 8999999999999999999999998886
No 85
>KOG0538|consensus
Probab=72.17 E-value=9.3 Score=39.15 Aligned_cols=78 Identities=17% Similarity=0.096 Sum_probs=51.7
Q ss_pred HHHHhhcCCCCceEEeCccchh-----------------hcCCCc-eEecCcccccCCCCCCCCccCCHHHHHHHcCCCE
Q psy4093 214 LKLAQSFPGLIAGLVCQAPSVL-----------------ASNPGL-LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADL 275 (434)
Q Consensus 214 ~~lA~~a~~gv~GvVcs~~e~~-----------------~~~~~~-l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~ 275 (434)
+++|.++ |++|+|.|.+-.. +.+... ..+-.|||- +.+.-.|+ ..||--
T Consensus 237 A~~Ave~--G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~----------G~DVlKAL-ALGAk~ 303 (363)
T KOG0538|consen 237 ARKAVEA--GVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRR----------GTDVLKAL-ALGAKG 303 (363)
T ss_pred HHHHHHh--CCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCccc----------chHHHHHH-hcccce
Confidence 3455555 7999999985221 333332 244677773 45678899 899999
Q ss_pred EEeCCcccC-----CCCHHHHHHHHHHHHHHHHH
Q psy4093 276 GVVGRGITQ-----APDPVEAARRYKEVMWEAYE 304 (434)
Q Consensus 276 IVVGR~It~-----A~DP~~aa~~i~~~~~~a~~ 304 (434)
+-|||||.- .++-++.+-+|...+.+--.
T Consensus 304 VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tm 337 (363)
T KOG0538|consen 304 VFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTM 337 (363)
T ss_pred EEecCchheeeccccchhHHHHHHHHHHHHHHHH
Confidence 999999975 45567766666665554433
No 86
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=71.63 E-value=40 Score=32.84 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=16.8
Q ss_pred CHHHHHHHcCCCEEEeCCcccC
Q psy4093 263 GPTDVITLRGADLGVVGRGITQ 284 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~ 284 (434)
+..+++ ++|||.+|||..|.+
T Consensus 199 ~i~~~~-~~gaD~vvvGSai~~ 219 (244)
T PRK13125 199 DARDAL-SAGADGVVVGTAFIE 219 (244)
T ss_pred HHHHHH-HcCCCEEEECHHHHH
Confidence 334556 799999999999976
No 87
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=71.54 E-value=7.8 Score=40.24 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.7
Q ss_pred CCHHHH---HHHcCCCEEEeCCcccCCCCHHHH
Q psy4093 262 NGPTDV---ITLRGADLGVVGRGITQAPDPVEA 291 (434)
Q Consensus 262 ~TP~~A---i~~~GAD~IVVGR~It~A~DP~~a 291 (434)
....+| + ++||.-+++||-|.|.+||.+.
T Consensus 299 ~~v~~a~~~i-~aGa~Gv~iGRNIfQ~~~~ea~ 330 (348)
T PRK09250 299 DAVRTAVINK-RAGGMGLIIGRKAFQRPMAEGV 330 (348)
T ss_pred HHHHHHHHhh-hcCCcchhhchhhhcCCcHHHH
Confidence 455778 8 8999999999999999998653
No 88
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=70.89 E-value=5.2 Score=43.14 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=32.1
Q ss_pred CHHHHHHHcCCC---EEEeCCcccCCCCHHHHHHHHHHHHHHH
Q psy4093 263 GPTDVITLRGAD---LGVVGRGITQAPDPVEAARRYKEVMWEA 302 (434)
Q Consensus 263 TP~~Ai~~~GAD---~IVVGR~It~A~DP~~aa~~i~~~~~~a 302 (434)
+..+++ +.|++ .|.|++.|.+++||.++++++++ .|..
T Consensus 457 ~~~~~~-~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~-~~~~ 497 (502)
T PLN02898 457 NAASVM-ESGAPNLKGVAVVSALFDQEDVLKATRKLHA-ILTE 497 (502)
T ss_pred HHHHHH-HcCCCcCceEEEEeHHhcCCCHHHHHHHHHH-HHHH
Confidence 335667 88898 99999999999999999999987 5544
No 89
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=70.53 E-value=69 Score=31.80 Aligned_cols=109 Identities=9% Similarity=0.041 Sum_probs=56.3
Q ss_pred EecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhh
Q psy4093 243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRK 322 (434)
Q Consensus 243 ~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~ 322 (434)
.|..||... +..+...-.+.|. +.|+|.+++.-|.+...++.+. -+|.+++......-..-|..=.
T Consensus 72 ~vi~gv~~~----~~~~~i~~a~~a~-~~G~d~v~~~pP~~~~~~~~~i---------~~~~~~ia~~~~~pv~lYn~P~ 137 (292)
T PRK03170 72 PVIAGTGSN----STAEAIELTKFAE-KAGADGALVVTPYYNKPTQEGL---------YQHFKAIAEATDLPIILYNVPG 137 (292)
T ss_pred cEEeecCCc----hHHHHHHHHHHHH-HcCCCEEEECCCcCCCCCHHHH---------HHHHHHHHhcCCCCEEEEECcc
Confidence 455777632 2333445556677 8999999999999987765332 2344444322222223332210
Q ss_pred hhccchhhHHHHHHhhhcCCcEEEEec-CCCHHHHHHHHHHhCCce
Q psy4093 323 ADVKCRISSTLLDIMVKKKSNLCVALD-VTQAKDLLTLTRQLGPHI 367 (434)
Q Consensus 323 ~~~~~~~~~~l~~~m~~k~s~LivAlD-~~~~~~al~la~~lgp~i 367 (434)
.+.+.++-.++.-+. +-+|++-.=| ..+.....++.+..++..
T Consensus 138 -~~g~~l~~~~~~~L~-~~p~v~giK~s~~d~~~~~~~~~~~~~~~ 181 (292)
T PRK03170 138 -RTGVDILPETVARLA-EHPNIVGIKEATGDLERVSELIELVPDDF 181 (292)
T ss_pred -ccCCCCCHHHHHHHH-cCCCEEEEEECCCCHHHHHHHHHhCCCCe
Confidence 122333333333332 3455433334 234667777776666533
No 90
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=69.19 E-value=4.2 Score=39.40 Aligned_cols=62 Identities=19% Similarity=0.101 Sum_probs=40.5
Q ss_pred EEEecCCCHHHHHHHHHHhCCceeEEeEceeeee-------cCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHh
Q psy4093 345 CVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVR-------DFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRF 416 (434)
Q Consensus 345 ivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~-------~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~ 416 (434)
+.++|....++-++-.+..|-. -+|+|+.. .+|++++++|+ ++++.+|+|.|++ ++|+...+
T Consensus 13 i~~~d~~~l~~~~~~l~~~~~~----~~H~DimDg~fvpn~~~G~~~v~~lr----~~~~~~~lDvHLm--~~~p~~~i 81 (228)
T PTZ00170 13 ILAADFSKLADEAQDVLSGGAD----WLHVDVMDGHFVPNLSFGPPVVKSLR----KHLPNTFLDCHLM--VSNPEKWV 81 (228)
T ss_pred HhhcCHHHHHHHHHHHHHcCCC----EEEEecccCccCCCcCcCHHHHHHHH----hcCCCCCEEEEEC--CCCHHHHH
Confidence 3445665555555555554422 25788743 57899999985 3677999999999 55555443
No 91
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=68.71 E-value=4.1 Score=43.48 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=35.1
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQR 306 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~ 306 (434)
+..+++ +.|++.|-|=|.|++|+||.++++++++ .|+.....
T Consensus 377 Ni~~vl-~aGa~GVAVVSAI~~A~DP~aa~~~l~~-~~~~~~~~ 418 (437)
T PRK12290 377 NAEQVW-QCGVSSLAVVRAITLAEDPQLVIEFFDQ-VMAENQLL 418 (437)
T ss_pred HHHHHH-HcCCCEEEEehHhhcCCCHHHHHHHHHH-HHhhcCCC
Confidence 347778 9999999999999999999999999887 77554433
No 92
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=68.43 E-value=46 Score=32.91 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=31.8
Q ss_pred cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeee
Q psy4093 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSR 401 (434)
Q Consensus 343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFl 401 (434)
.+.+++|..+++.+.+-.+. |.+++.+.+..--.++..+++++|..+.+
T Consensus 75 ~~plsiDT~~~~vi~~al~~----------G~~iINsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 75 DVPISVDTYRAEVARAALEA----------GADIINDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred CCeEEEeCCCHHHHHHHHHc----------CCCEEEECCCCCCchhHHHHHHcCCcEEE
Confidence 35678999999888876552 67777764322123344556678877776
No 93
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=67.53 E-value=46 Score=37.81 Aligned_cols=123 Identities=24% Similarity=0.338 Sum_probs=75.9
Q ss_pred HhccccceEEEccc-CCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHH---hhcchhhHHHHHhhhccCCCCC
Q psy4093 129 LIGEWAHLVTVHSI-AGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYT---QVGFKAITLELKKYLCNNQVLP 204 (434)
Q Consensus 129 ~~~~~~d~vTvH~~-~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~---~~g~~~~~~~~~~~~~~~~~~~ 204 (434)
+..-++|+|-+-+. -+.+-++.+.+.+...| +=.|.+..+ .+++. +.|.. =+++|++...
T Consensus 129 a~~~GADavLLI~~~L~~~~l~~l~~~a~~lG----me~LvEvh~-----~~el~~a~~~ga~-------iiGINnRdL~ 192 (695)
T PRK13802 129 ARAHGADLVLLIVAALDDAQLKHLLDLAHELG----MTVLVETHT-----REEIERAIAAGAK-------VIGINARNLK 192 (695)
T ss_pred HHHcCCCEeehhHhhcCHHHHHHHHHHHHHcC----CeEEEEeCC-----HHHHHHHHhCCCC-------EEEEeCCCCc
Confidence 34447888877664 35667888888887665 334555443 23332 11111 2566776665
Q ss_pred CCCchHHHHHHHHhhcCCCCceEEeCccchhhcCCCceEec-CcccccCCCCCCCCccCCHHHH--HHHcCCCEEEeCCc
Q psy4093 205 KCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLT-PGIHLNQTGDNKGQQYNGPTDV--ITLRGADLGVVGRG 281 (434)
Q Consensus 205 ~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~~~~~~~l~vt-PGIr~~~~~~~~~dQ~~TP~~A--i~~~GAD~IVVGR~ 281 (434)
.+..+.+...+++.... .+.+.|. -||+ ||+++ +.+.|+|-+.||.+
T Consensus 193 tf~vd~~~t~~L~~~ip-----------------~~~~~VsESGI~-------------~~~d~~~l~~~G~davLIGes 242 (695)
T PRK13802 193 DLKVDVNKYNELAADLP-----------------DDVIKVAESGVF-------------GAVEVEDYARAGADAVLVGEG 242 (695)
T ss_pred cceeCHHHHHHHHhhCC-----------------CCcEEEEcCCCC-------------CHHHHHHHHHCCCCEEEECHH
Confidence 66666666666665432 1222222 4555 44554 22789999999999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy4093 282 ITQAPDPVEAARRYKE 297 (434)
Q Consensus 282 It~A~DP~~aa~~i~~ 297 (434)
+-.++||.++.+++..
T Consensus 243 lm~~~dp~~~~~~l~~ 258 (695)
T PRK13802 243 VATADDHELAVERLVK 258 (695)
T ss_pred hhCCCCHHHHHHHHHh
Confidence 9999999988888763
No 94
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=66.99 E-value=32 Score=30.43 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=43.0
Q ss_pred CcEEEEe---cCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecC
Q psy4093 342 SNLCVAL---DVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNG 403 (434)
Q Consensus 342 s~LivAl---D~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDl 403 (434)
.-+++++ |....+.+.++++.+++..-++=++.-.-..+..++-+.++++|+++....|.|+
T Consensus 52 d~vvi~lGtNd~~~~~nl~~ii~~~~~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~~~v~~id~ 116 (150)
T cd01840 52 KTVVIGLGTNGPFTKDQLDELLDALGPDRQVYLVNPHVPRPWEPDVNAYLLDAAKKYKNVTIIDW 116 (150)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHcCCCCEEEEEECCCCcchHHHHHHHHHHHHHHCCCcEEecH
Confidence 3345555 8888999999999999755555555543334446666778888888855667775
No 95
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=64.89 E-value=66 Score=32.35 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=61.6
Q ss_pred EecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhh
Q psy4093 243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRK 322 (434)
Q Consensus 243 ~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~ 322 (434)
.|..||.. +..+.+.-.+.|. +.|+|.+++--|.+...++. ++..|.+.+......-..-|. +
T Consensus 78 pvi~gv~~-----~t~~~i~~~~~a~-~~Gadav~~~pP~y~~~~~~---------~i~~~f~~va~~~~lpi~lYn-~- 140 (303)
T PRK03620 78 PVIAGAGG-----GTAQAIEYAQAAE-RAGADGILLLPPYLTEAPQE---------GLAAHVEAVCKSTDLGVIVYN-R- 140 (303)
T ss_pred cEEEecCC-----CHHHHHHHHHHHH-HhCCCEEEECCCCCCCCCHH---------HHHHHHHHHHHhCCCCEEEEc-C-
Confidence 44557752 2333455666777 89999999999988866643 233444444433333333454 2
Q ss_pred hhccchhhHHHHHHhhhcCCcEEEEe-c-CCCHHHHHHHHHHhCCceeEEeEce
Q psy4093 323 ADVKCRISSTLLDIMVKKKSNLCVAL-D-VTQAKDLLTLTRQLGPHIAVLKTHS 374 (434)
Q Consensus 323 ~~~~~~~~~~l~~~m~~k~s~LivAl-D-~~~~~~al~la~~lgp~i~~lKvg~ 374 (434)
+..+++-.++.-+.++.+|+ +++ | ..+.....++.+..++...++ .|.
T Consensus 141 --~g~~l~~~~l~~L~~~~pni-~giK~s~~d~~~~~~~~~~~~~~f~vl-~G~ 190 (303)
T PRK03620 141 --DNAVLTADTLARLAERCPNL-VGFKDGVGDIELMQRIVRALGDRLLYL-GGL 190 (303)
T ss_pred --CCCCCCHHHHHHHHhhCCCE-EEEEeCCCCHHHHHHHHHHcCCCeEEE-eCC
Confidence 22234433333333334554 444 4 245778888887777665444 453
No 96
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=64.63 E-value=1.5e+02 Score=32.03 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=64.0
Q ss_pred CHHHH--HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhh-----------c-ccccccChhhhhh-hccc
Q psy4093 263 GPTDV--ITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKK-----------E-NSRIVTPFETRKA-DVKC 327 (434)
Q Consensus 263 TP~~A--i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~-----------~-~~~~~~~~~~r~~-~~~~ 327 (434)
||+++ + ..|+|-+.||.++-.++||.++.+++.. +..|=|+- . -.-+..-|..+.. ..+-
T Consensus 221 t~~d~~~~-~~~~davLiG~~lm~~~d~~~~~~~L~~----~~vKICGit~~eda~~a~~~GaD~lGfIf~~~SpR~V~~ 295 (454)
T PRK09427 221 THAQVREL-SPFANGFLIGSSLMAEDDLELAVRKLIL----GENKVCGLTRPQDAKAAYDAGAVYGGLIFVEKSPRYVSL 295 (454)
T ss_pred CHHHHHHH-HhcCCEEEECHHHcCCCCHHHHHHHHhc----cccccCCCCCHHHHHHHHhCCCCEEeeEeCCCCCCCCCH
Confidence 66665 4 4589999999999999999999888854 11122210 0 1112222211111 0111
Q ss_pred hhhHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHH
Q psy4093 328 RISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELT 389 (434)
Q Consensus 328 ~~~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~ 389 (434)
..++.|.+... -.++.|- --++.+++.++++.+++.+ +.+|= +..+++++.|+
T Consensus 296 ~~a~~i~~~l~--v~~VgVf-v~~~~~~i~~i~~~~~lD~--vQLHG----~e~~~~~~~l~ 348 (454)
T PRK09427 296 EQAQEIIAAAP--LRYVGVF-RNADIEDIVDIAKQLSLAA--VQLHG----DEDQAYIDALR 348 (454)
T ss_pred HHHHHHHHhCC--CCEEEEE-eCCCHHHHHHHHHHcCCCE--EEeCC----CCCHHHHHHHH
Confidence 23443443322 2223332 4457999999999888764 45553 44577877775
No 97
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=64.62 E-value=34 Score=33.97 Aligned_cols=121 Identities=26% Similarity=0.386 Sum_probs=72.2
Q ss_pred HhccccceEEEcc-cCCchhHHHHHHHhhhhCCCCceEEEEEeCCCCCCChHHHHh---hcchhhHHHHHhhhccCCCCC
Q psy4093 129 LIGEWAHLVTVHS-IAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQ---VGFKAITLELKKYLCNNQVLP 204 (434)
Q Consensus 129 ~~~~~~d~vTvH~-~~G~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~~~~~~---~g~~~~~~~~~~~~~~~~~~~ 204 (434)
+...|||+|.+-+ .-+.+.++.+.+.++..| +=.|.+..+ .+++.. .|. +=+|+|++...
T Consensus 127 A~~~GADaVLLI~~~L~~~~l~~l~~~a~~lG----le~lVEVh~-----~~El~~al~~~a-------~iiGINnRdL~ 190 (254)
T PF00218_consen 127 ARAAGADAVLLIAAILSDDQLEELLELAHSLG----LEALVEVHN-----EEELERALEAGA-------DIIGINNRDLK 190 (254)
T ss_dssp HHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-----EEEEEESS-----HHHHHHHHHTT--------SEEEEESBCTT
T ss_pred HHHcCCCEeehhHHhCCHHHHHHHHHHHHHcC----CCeEEEECC-----HHHHHHHHHcCC-------CEEEEeCcccc
Confidence 4445788876644 456777888888887665 446666655 223321 111 11466766665
Q ss_pred CCCchHHHHHHHHhhcCCCCceEEeCccchhhcCCCceEe-cCcccccCCCCCCCCccCCHHHHH--HHcCCCEEEeCCc
Q psy4093 205 KCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQL-TPGIHLNQTGDNKGQQYNGPTDVI--TLRGADLGVVGRG 281 (434)
Q Consensus 205 ~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~~~~~~~l~v-tPGIr~~~~~~~~~dQ~~TP~~Ai--~~~GAD~IVVGR~ 281 (434)
.+..+.+...+++.... ++.+.| --||. ||+++. .+.|+|-+.||.+
T Consensus 191 tf~vd~~~~~~l~~~ip-----------------~~~~~iseSGI~-------------~~~d~~~l~~~G~davLVGe~ 240 (254)
T PF00218_consen 191 TFEVDLNRTEELAPLIP-----------------KDVIVISESGIK-------------TPEDARRLARAGADAVLVGEA 240 (254)
T ss_dssp TCCBHTHHHHHHHCHSH-----------------TTSEEEEESS-S-------------SHHHHHHHCTTT-SEEEESHH
T ss_pred CcccChHHHHHHHhhCc-----------------cceeEEeecCCC-------------CHHHHHHHHHCCCCEEEECHH
Confidence 66666566666665432 122222 24554 555553 2679999999999
Q ss_pred ccCCCCHHHHHHHH
Q psy4093 282 ITQAPDPVEAARRY 295 (434)
Q Consensus 282 It~A~DP~~aa~~i 295 (434)
+..++||.++.+++
T Consensus 241 lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 241 LMRSPDPGEALREL 254 (254)
T ss_dssp HHTSSSHHHHHHHH
T ss_pred HhCCCCHHHHHhcC
Confidence 99999999988753
No 98
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=64.55 E-value=1.5e+02 Score=31.65 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=33.6
Q ss_pred CCHHHHHHHcCCCEEE-eCCcccCCCC-HHHHHHHHHHHHHHHHHH
Q psy4093 262 NGPTDVITLRGADLGV-VGRGITQAPD-PVEAARRYKEVMWEAYEQ 305 (434)
Q Consensus 262 ~TP~~Ai~~~GAD~IV-VGR~It~A~D-P~~aa~~i~~~~~~a~~~ 305 (434)
.+..+.+...|.|+|+ +|.+|...+| |.+-++.+|+ .|+|+.+
T Consensus 347 ~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rq-A~ea~~~ 391 (412)
T TIGR03326 347 GLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRA-AIDAIIE 391 (412)
T ss_pred hHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHH-HHHHHHc
Confidence 3445555588999665 9999999755 8889999997 9999764
No 99
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=64.18 E-value=67 Score=32.42 Aligned_cols=27 Identities=7% Similarity=0.285 Sum_probs=17.8
Q ss_pred EEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecC
Q psy4093 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDF 380 (434)
Q Consensus 344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~ 380 (434)
+.+++|..+++-+.+-.+. |.+++.|-
T Consensus 91 ~~ISIDT~~~~va~~AL~~----------GadiINDI 117 (282)
T PRK11613 91 VWISVDTSKPEVIRESAKA----------GAHIINDI 117 (282)
T ss_pred CeEEEECCCHHHHHHHHHc----------CCCEEEEC
Confidence 4677888888777775542 56666553
No 100
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=62.95 E-value=82 Score=31.40 Aligned_cols=33 Identities=3% Similarity=-0.011 Sum_probs=20.1
Q ss_pred HHHHhcc-ccceEEEcccCCchhHHHHHHHhhhhC
Q psy4093 126 QFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELG 159 (434)
Q Consensus 126 ~~~~~~~-~~d~vTvH~~~G~~ml~~a~~~~~~~~ 159 (434)
.++.+++ ++|.+++|-..=.+ .....+.+++.|
T Consensus 111 F~~~~~~aGvdgviipDLP~ee-~~~~~~~~~~~g 144 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDLPYEE-SDYLISVCNLYN 144 (263)
T ss_pred HHHHHHHcCCeEEEecCCCHHH-HHHHHHHHHHcC
Confidence 3445555 79999999887544 334444444445
No 101
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=61.29 E-value=13 Score=36.58 Aligned_cols=58 Identities=16% Similarity=0.053 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcch
Q psy4093 352 QAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPIL 409 (434)
Q Consensus 352 ~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIp 409 (434)
....+..+.+..|++|-++|.|--.+.=+..+++++..++|++||..++....|..+.
T Consensus 10 ~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~ 67 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIA 67 (237)
T ss_pred CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHH
Confidence 5677888899999999999999888777778899999999999999999998666553
No 102
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=61.17 E-value=74 Score=31.90 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=55.6
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcc-cccccChhh
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKEN-SRIVTPFET 320 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~-~~~~~~~~~ 320 (434)
..|..||... +..+.+.-.+.|. +.|+|.+++.-|.|...++.+. -+|.+.+.... ..-..-|..
T Consensus 70 ~pvi~gv~~~----~t~~ai~~a~~A~-~~Gad~v~v~pP~y~~~~~~~l---------~~~f~~ia~a~~~lpv~iYn~ 135 (294)
T TIGR02313 70 IPFAPGTGAL----NHDETLELTKFAE-EAGADAAMVIVPYYNKPNQEAL---------YDHFAEVADAVPDFPIIIYNI 135 (294)
T ss_pred CcEEEECCcc----hHHHHHHHHHHHH-HcCCCEEEEcCccCCCCCHHHH---------HHHHHHHHHhccCCCEEEEeC
Confidence 4566777743 2222334445666 8999999999999998765332 33444443221 222233321
Q ss_pred hhhhccchhhHHHHHHhhhcCCcEEEEe-cC-CCHHHHHHHHHHhCCce
Q psy4093 321 RKADVKCRISSTLLDIMVKKKSNLCVAL-DV-TQAKDLLTLTRQLGPHI 367 (434)
Q Consensus 321 r~~~~~~~~~~~l~~~m~~k~s~LivAl-D~-~~~~~al~la~~lgp~i 367 (434)
=. .+.+.++-.++.-+.++-+|++ ++ |- .+.....++.+..++..
T Consensus 136 P~-~tg~~l~~~~l~~L~~~~pnv~-giK~ss~d~~~~~~~~~~~~~~~ 182 (294)
T TIGR02313 136 PG-RAAQEIAPKTMARLRKDCPNIV-GAKESNKDFEHLNHLFLEAGRDF 182 (294)
T ss_pred ch-hcCcCCCHHHHHHHHhhCCCEE-EEEeCCCCHHHHHHHHHhcCCCe
Confidence 00 1222333333333333335543 44 42 24566666666666543
No 103
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=59.48 E-value=11 Score=36.20 Aligned_cols=34 Identities=29% Similarity=0.194 Sum_probs=30.7
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
+..+++ +.|++.|-|-+.|.+++||.++++++++
T Consensus 171 ni~~l~-~~Ga~GiAvisai~~~~d~~~~~~~l~~ 204 (211)
T PRK03512 171 RAPAVL-ATGVGSIAVVSAITQAADWRAATAQLLE 204 (211)
T ss_pred HHHHHH-HcCCCEEEEhhHhhCCCCHHHHHHHHHH
Confidence 446778 8999999999999999999999998887
No 104
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=58.81 E-value=3.6 Score=40.31 Aligned_cols=49 Identities=29% Similarity=0.275 Sum_probs=31.4
Q ss_pred hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093 236 ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRY 295 (434)
Q Consensus 236 ~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i 295 (434)
....-.+++-.|||-. -...++. ++|||.||||-.|++..+-.++.+.+
T Consensus 179 ~~~~~~LivGGGIrs~----------e~A~~~~-~aGAD~IVvGn~iee~~~~e~~~~~i 227 (230)
T PF01884_consen 179 KLSDIPLIVGGGIRSP----------EQAREMA-EAGADTIVVGNAIEEDPDLEEALETI 227 (230)
T ss_dssp HSSSSEEEEESS--SH----------HHHHHHH-CTTSSEEEESCHHHHHH-HHHHHTHH
T ss_pred hcCCccEEEeCCcCCH----------HHHHHHH-HCCCCEEEECCEEEEcchHHHHHHHH
Confidence 4556667888899943 1335566 89999999999999877633334433
No 105
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=57.92 E-value=12 Score=35.94 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=27.6
Q ss_pred CHHHHHHHcCCCEEEeCCcccCC----CCHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQA----PDPVEAARRYKE 297 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A----~DP~~aa~~i~~ 297 (434)
+..+.+ ++|+|.+.||+.|+.+ +|+.+.++++++
T Consensus 164 n~~~~~-~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~ 201 (206)
T PRK09140 164 NLAPYL-AAGAAGFGLGSALYRPGQSAEEVAERARAFVA 201 (206)
T ss_pred HHHHHH-HCCCeEEEEehHhcccccChHHHHHHHHHHHH
Confidence 347788 8999999999999997 677777776654
No 106
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.74 E-value=1.1e+02 Score=32.49 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=20.5
Q ss_pred HHHHHHHcCCCEEEeCCcccCC-CCHHH
Q psy4093 264 PTDVITLRGADLGVVGRGITQA-PDPVE 290 (434)
Q Consensus 264 P~~Ai~~~GAD~IVVGR~It~A-~DP~~ 290 (434)
...|+ ..|||.++||++|+.. +-|.+
T Consensus 271 i~KAL-alGA~aVmvGs~~agt~Espg~ 297 (404)
T PRK06843 271 VVKAI-AAGADSVMIGNLFAGTKESPSE 297 (404)
T ss_pred HHHHH-HcCCCEEEEcceeeeeecCCCc
Confidence 34667 8999999999999994 44654
No 107
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=57.40 E-value=12 Score=34.27 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHH
Q psy4093 354 KDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLR 415 (434)
Q Consensus 354 ~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a 415 (434)
|-+-+|++.++|--.-|+++.+- ..||..++..|+ .+|+-|.+|-|...=++.|..+
T Consensus 45 D~vsqLae~~pPa~tt~~l~q~~-d~Fg~aL~~aLr----~~GYaVvtd~k~~~~~~~v~L~ 101 (145)
T PRK13835 45 DMVSRLAEQIGPGTTTIKLKKDT-SPFGQALEAALK----GWGYAVVTDQKTDKGPKPVELA 101 (145)
T ss_pred HHHHHHHHhcCCCceEEEEeecC-cHHHHHHHHHHH----hcCeEEeeccccccccCccceE
Confidence 45789999999999999999999 899999999996 4899999998843333333333
No 108
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=56.90 E-value=1.1e+02 Score=30.07 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=55.9
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhh
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETR 321 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r 321 (434)
+.|..||+.. ...+...-...|. +.|+|.++|--|.+...++.+.. +|.+++....+.-..-|--=
T Consensus 67 ~~vi~gv~~~----~~~~~i~~a~~a~-~~Gad~v~v~pP~y~~~~~~~~~---------~~~~~ia~~~~~pi~iYn~P 132 (281)
T cd00408 67 VPVIAGVGAN----STREAIELARHAE-EAGADGVLVVPPYYNKPSQEGIV---------AHFKAVADASDLPVILYNIP 132 (281)
T ss_pred CeEEEecCCc----cHHHHHHHHHHHH-HcCCCEEEECCCcCCCCCHHHHH---------HHHHHHHhcCCCCEEEEECc
Confidence 4556777642 1112223334556 88999999999999887664433 33333332222222223211
Q ss_pred hhhccchhhHHHHHHhhhcCCcEEEEe-cC-CCHHHHHHHHHHhCCceeE
Q psy4093 322 KADVKCRISSTLLDIMVKKKSNLCVAL-DV-TQAKDLLTLTRQLGPHIAV 369 (434)
Q Consensus 322 ~~~~~~~~~~~l~~~m~~k~s~LivAl-D~-~~~~~al~la~~lgp~i~~ 369 (434)
..+..+++-.++.-+.+ .+|+ +++ |- .+.....++.+..++.+.+
T Consensus 133 -~~tg~~l~~~~~~~L~~-~~~v-~giK~s~~d~~~~~~~~~~~~~~~~v 179 (281)
T cd00408 133 -GRTGVDLSPETIARLAE-HPNI-VGIKDSSGDLDRLTRLIALLGPDFAV 179 (281)
T ss_pred -cccCCCCCHHHHHHHhc-CCCE-EEEEeCCCCHHHHHHHHHhcCCCeEE
Confidence 11223333332222222 3443 344 32 3577777787777666554
No 109
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=56.59 E-value=18 Score=34.85 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=25.6
Q ss_pred HHHHHHc-CCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 265 TDVITLR-GADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 265 ~~Ai~~~-GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
.+++ +. |+|.++|||+++......+.++++..
T Consensus 209 ~~~l-~~~g~dgv~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 209 VEAF-EEGGADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred HHHH-HhCCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence 4456 55 99999999999999998877766654
No 110
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=56.49 E-value=13 Score=36.70 Aligned_cols=50 Identities=32% Similarity=0.385 Sum_probs=35.9
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAY 303 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~ 303 (434)
++|--||+.. + ...+|. +.|+|-+-|--.|-.|.||+..|+.++. .-+|-
T Consensus 178 vIvDAGiG~p--S--------daa~AM-ElG~daVLvNTAiA~A~dPv~MA~Af~~-AV~AG 227 (247)
T PF05690_consen 178 VIVDAGIGTP--S--------DAAQAM-ELGADAVLVNTAIAKAKDPVAMARAFKL-AVEAG 227 (247)
T ss_dssp BEEES---SH--H--------HHHHHH-HTT-SEEEESHHHHTSSSHHHHHHHHHH-HHHHH
T ss_pred EEEeCCCCCH--H--------HHHHHH-HcCCceeehhhHHhccCCHHHHHHHHHH-HHHHH
Confidence 4666787743 1 236778 8999999999999999999999999987 44443
No 111
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=56.46 E-value=21 Score=35.71 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=33.1
Q ss_pred HHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy4093 264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYE 304 (434)
Q Consensus 264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~ 304 (434)
..+|+ +.|+|-+-+.-+|.+|+||.+.|+.++. ..+|-+
T Consensus 204 a~~Am-ElGaDgVL~nSaIakA~dP~~mA~a~~~-AV~AGR 242 (267)
T CHL00162 204 ASQAM-ELGASGVLLNTAVAQAKNPEQMAKAMKL-AVQAGR 242 (267)
T ss_pred HHHHH-HcCCCEEeecceeecCCCHHHHHHHHHH-HHHHHH
Confidence 36678 8999999999999999999999999987 555543
No 112
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=56.43 E-value=2e+02 Score=28.30 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=55.8
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhh
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETR 321 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r 321 (434)
+.|..||... +..+-..-...|. +.|+|.+++..|-+...++.+.. +|.+++......-..-|-.=
T Consensus 70 ~~vi~gv~~~----~~~~~~~~a~~a~-~~G~d~v~~~~P~~~~~~~~~l~---------~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 70 VPVIAGTGSN----NTAEAIELTKRAE-KAGADAALVVTPYYNKPSQEGLY---------AHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred CcEEeccCCc----cHHHHHHHHHHHH-HcCCCEEEEcccccCCCCHHHHH---------HHHHHHHhcCCCCEEEEECh
Confidence 3555677632 2222244556667 89999999999998776654332 33344432222222233211
Q ss_pred hhhccchhhHHHHHHhhhcCCcEEEEecC--CCHHHHHHHHHHhCCceeEE
Q psy4093 322 KADVKCRISSTLLDIMVKKKSNLCVALDV--TQAKDLLTLTRQLGPHIAVL 370 (434)
Q Consensus 322 ~~~~~~~~~~~l~~~m~~k~s~LivAlD~--~~~~~al~la~~lgp~i~~l 370 (434)
..+.+.++-.+++-+.+ .+| ++++-. .+.....++.+..++.+.++
T Consensus 136 -~~~g~~ls~~~~~~L~~-~p~-v~giK~s~~~~~~~~~~~~~~~~~~~v~ 183 (284)
T cd00950 136 -GRTGVNIEPETVLRLAE-HPN-IVGIKEATGDLDRVSELIALCPDDFAVL 183 (284)
T ss_pred -hHhCCCCCHHHHHHHhc-CCC-EEEEEECCCCHHHHHHHHHhCCCCeEEE
Confidence 11223333333322222 244 444432 34567777777776655443
No 113
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=56.04 E-value=1.8e+02 Score=28.82 Aligned_cols=109 Identities=10% Similarity=0.044 Sum_probs=55.7
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhh
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETR 321 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r 321 (434)
+.|..||... +..+-+.-...|. +.|+|.++|--|.+...++.+. -+|.+++...-..-..-|-.
T Consensus 68 ~~vi~gv~~~----s~~~~i~~a~~a~-~~Gad~v~v~pP~y~~~~~~~i---------~~~~~~i~~~~~~pi~lYn~- 132 (285)
T TIGR00674 68 VPVIAGTGSN----ATEEAISLTKFAE-DVGADGFLVVTPYYNKPTQEGL---------YQHFKAIAEEVDLPIILYNV- 132 (285)
T ss_pred CeEEEeCCCc----cHHHHHHHHHHHH-HcCCCEEEEcCCcCCCCCHHHH---------HHHHHHHHhcCCCCEEEEEC-
Confidence 4566787632 2222234445566 8999999999999998765432 23444443222222223321
Q ss_pred hhhccchhhHHHHHHhhhcCCcEEEEe-c-CCCHHHHHHHHHHhCCce
Q psy4093 322 KADVKCRISSTLLDIMVKKKSNLCVAL-D-VTQAKDLLTLTRQLGPHI 367 (434)
Q Consensus 322 ~~~~~~~~~~~l~~~m~~k~s~LivAl-D-~~~~~~al~la~~lgp~i 367 (434)
-..+.++++-.+++-+. +..| |+++ | ..+.....++.+..++.+
T Consensus 133 P~~tg~~l~~~~l~~L~-~~~~-v~giK~s~~d~~~~~~l~~~~~~~~ 178 (285)
T TIGR00674 133 PSRTGVSLYPETVKRLA-EEPN-IVAIKEATGNLERISEIKAIAPDDF 178 (285)
T ss_pred cHHhcCCCCHHHHHHHH-cCCC-EEEEEeCCCCHHHHHHHHHhcCCCe
Confidence 01123334433333332 2345 5566 2 334666777766665443
No 114
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=54.98 E-value=23 Score=36.56 Aligned_cols=38 Identities=29% Similarity=0.239 Sum_probs=32.4
Q ss_pred HHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy4093 265 TDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYE 304 (434)
Q Consensus 265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~ 304 (434)
.+|+ +.|||-+-+--+|.+|+||+..|+.++. +.+|-+
T Consensus 265 ~~Am-elGadgVL~nSaIa~a~dPv~Ma~A~~~-av~aGr 302 (326)
T PRK11840 265 AVAM-ELGCDGVLMNTAIAEAKNPVLMARAMKL-AVEAGR 302 (326)
T ss_pred HHHH-HcCCCEEEEcceeccCCCHHHHHHHHHH-HHHHHH
Confidence 5668 8999999999999999999999999997 444443
No 115
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=54.52 E-value=21 Score=37.35 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=39.3
Q ss_pred CCceEEeCccchh-----------------hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCC
Q psy4093 223 LIAGLVCQAPSVL-----------------ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQA 285 (434)
Q Consensus 223 gv~GvVcs~~e~~-----------------~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A 285 (434)
|++||+.|.+--. .++ --+++.-|||- +.+.-.|+ ..|||.+.||||+..+
T Consensus 257 G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~-~~vi~dGGIr~----------g~Dv~KAL-aLGA~aV~iGr~~l~~ 324 (361)
T cd04736 257 GADGVILSNHGGRQLDDAIAPIEALAEIVAATY-KPVLIDSGIRR----------GSDIVKAL-ALGANAVLLGRATLYG 324 (361)
T ss_pred CcCEEEECCCCcCCCcCCccHHHHHHHHHHHhC-CeEEEeCCCCC----------HHHHHHHH-HcCCCEEEECHHHHHH
Confidence 7999987763110 222 33466667773 23456788 8999999999999953
Q ss_pred --CCHHHHHHHHHH
Q psy4093 286 --PDPVEAARRYKE 297 (434)
Q Consensus 286 --~DP~~aa~~i~~ 297 (434)
..-.+.+++..+
T Consensus 325 la~~G~~gv~~~l~ 338 (361)
T cd04736 325 LAARGEAGVSEVLR 338 (361)
T ss_pred HHhcCHHHHHHHHH
Confidence 344444444443
No 116
>PLN02979 glycolate oxidase
Probab=54.28 E-value=20 Score=37.54 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=46.9
Q ss_pred HHHHhhcCCCCceEEeCccchh-----------------hcCCC-ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCE
Q psy4093 214 LKLAQSFPGLIAGLVCQAPSVL-----------------ASNPG-LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADL 275 (434)
Q Consensus 214 ~~lA~~a~~gv~GvVcs~~e~~-----------------~~~~~-~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~ 275 (434)
+++|..+ |++|++.|.+... ..+++ -+++.-|||-. .+.-.|+ ..|||.
T Consensus 237 A~~a~~~--Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G----------~Di~KAL-ALGAda 303 (366)
T PLN02979 237 ARIAIQA--GAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRG----------TDVFKAL-ALGASG 303 (366)
T ss_pred HHHHHhc--CCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcH----------HHHHHHH-HcCCCE
Confidence 3344444 7999999985331 12222 24667777732 3456788 899999
Q ss_pred EEeCCcccCC--CCHHHHHHHHHHHHHHHHHHH
Q psy4093 276 GVVGRGITQA--PDPVEAARRYKEVMWEAYEQR 306 (434)
Q Consensus 276 IVVGR~It~A--~DP~~aa~~i~~~~~~a~~~~ 306 (434)
+-||||...+ ..-.+..+++.+ .|+.-+++
T Consensus 304 V~iGrp~L~~la~~G~~Gv~~~l~-~l~~El~~ 335 (366)
T PLN02979 304 IFIGRPVVFSLAAEGEAGVRKVLQ-MLRDEFEL 335 (366)
T ss_pred EEEcHHHHHHHHhcCHHHHHHHHH-HHHHHHHH
Confidence 9999999853 233333444443 44443333
No 117
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=53.97 E-value=2.5e+02 Score=30.54 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=33.9
Q ss_pred CCHHHHHHHcCCCEEE-eCCcccCCCC-HHHHHHHHHHHHHHHHHHH
Q psy4093 262 NGPTDVITLRGADLGV-VGRGITQAPD-PVEAARRYKEVMWEAYEQR 306 (434)
Q Consensus 262 ~TP~~Ai~~~GAD~IV-VGR~It~A~D-P~~aa~~i~~~~~~a~~~~ 306 (434)
.+..+.+...|-|+|+ +|.+|...+| |.+-++.+|+ .|+|..+-
T Consensus 378 g~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rq-A~ea~~~g 423 (468)
T PRK04208 378 GHMPALLDIFGDDVVLQFGGGTHGHPDGTAAGATANRV-ALEACVEA 423 (468)
T ss_pred hHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHH-HHHHHHhc
Confidence 3444555588999655 9999999755 8889999997 99887653
No 118
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=52.47 E-value=1.6e+02 Score=32.13 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=53.6
Q ss_pred EEEEecCCCHHHHHHHHHHhCCceeEEeEce--------eeeecCC---HHHHHHHHHHHhcCCCeeeecCCCCcchhHH
Q psy4093 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHS--------DAVRDFS---EEVQKELTALAKQHEFLRSRNGWFSPILSSF 412 (434)
Q Consensus 344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~--------dl~~~~g---~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV 412 (434)
++++-|+.+.++++.+++ .|-. .+|+|+ ......| ...+..+.+++++.+.+|+.|.-++. |.-+
T Consensus 291 ~vi~g~v~t~e~a~~a~~-aGaD--~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~-~~di 366 (505)
T PLN02274 291 DVIGGNVVTMYQAQNLIQ-AGVD--GLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISN-SGHI 366 (505)
T ss_pred cEEEecCCCHHHHHHHHH-cCcC--EEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCC-HHHH
Confidence 567789999999999997 3332 466652 1111122 23566677778888999999999998 6677
Q ss_pred HHHhhcCccccc
Q psy4093 413 SLRFRDDKTLAM 424 (434)
Q Consensus 413 ~~a~~~~~~~~~ 424 (434)
.+|+..|-+--|
T Consensus 367 ~kAla~GA~~V~ 378 (505)
T PLN02274 367 VKALTLGASTVM 378 (505)
T ss_pred HHHHHcCCCEEE
Confidence 888887755433
No 119
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=51.84 E-value=1.4e+02 Score=29.75 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=51.4
Q ss_pred cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhhhhccchhhHHHHHHhhhc
Q psy4093 261 YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKK 340 (434)
Q Consensus 261 ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k 340 (434)
..-.+.|. +.|+|.+++--|.+...++. ++-+|.+.+....+.-..-|. | +...++-.++.-+.+.
T Consensus 84 i~~a~~a~-~~Gad~v~~~pP~y~~~~~~---------~i~~~f~~v~~~~~~pi~lYn-~---~g~~l~~~~l~~L~~~ 149 (289)
T cd00951 84 IAYAQAAE-KAGADGILLLPPYLTEAPQE---------GLYAHVEAVCKSTDLGVIVYN-R---ANAVLTADSLARLAER 149 (289)
T ss_pred HHHHHHHH-HhCCCEEEECCCCCCCCCHH---------HHHHHHHHHHhcCCCCEEEEe-C---CCCCCCHHHHHHHHhc
Confidence 44556666 89999999999999876543 333455555433333333454 2 2233444433333332
Q ss_pred CCcEEEEe-c-CCCHHHHHHHHHHhCCce
Q psy4093 341 KSNLCVAL-D-VTQAKDLLTLTRQLGPHI 367 (434)
Q Consensus 341 ~s~LivAl-D-~~~~~~al~la~~lgp~i 367 (434)
-+|++ ++ | ..+.....++.+..++..
T Consensus 150 ~pniv-giKds~~d~~~~~~~~~~~~~~~ 177 (289)
T cd00951 150 CPNLV-GFKDGVGDIELMRRIVAKLGDRL 177 (289)
T ss_pred CCCEE-EEEeCCCCHHHHHHHHHhcCCCe
Confidence 45644 44 4 246677777777766543
No 120
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=51.69 E-value=2.7e+02 Score=30.35 Aligned_cols=43 Identities=21% Similarity=0.117 Sum_probs=34.1
Q ss_pred CCHHHHHHHcCCCEEE-eCCcccCCCC-HHHHHHHHHHHHHHHHHH
Q psy4093 262 NGPTDVITLRGADLGV-VGRGITQAPD-PVEAARRYKEVMWEAYEQ 305 (434)
Q Consensus 262 ~TP~~Ai~~~GAD~IV-VGR~It~A~D-P~~aa~~i~~~~~~a~~~ 305 (434)
.+..+.+...|.|+|+ +|.+|...+| |.+-++.+|+ +|+|..+
T Consensus 385 g~vp~~~~~~G~Dvil~aGGGi~gHPdG~~aGa~A~Rq-A~ea~~~ 429 (475)
T CHL00040 385 WHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRV-ALEACVQ 429 (475)
T ss_pred HHHHHHHHHhCCCeeEecCcceecCCCChhHHHHHHHH-HHHHHHH
Confidence 3444556588999655 9999999755 8999999997 9999776
No 121
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=51.10 E-value=2.6e+02 Score=30.22 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=32.8
Q ss_pred CHHHHHHHcCCCEEE-eCCcccCCC-CHHHHHHHHHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGV-VGRGITQAP-DPVEAARRYKEVMWEAYEQ 305 (434)
Q Consensus 263 TP~~Ai~~~GAD~IV-VGR~It~A~-DP~~aa~~i~~~~~~a~~~ 305 (434)
+..+.+...|.|+|+ +|.+|...+ +|.+-++.+|+ .|+|..+
T Consensus 363 ~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rq-A~ea~~~ 406 (450)
T cd08212 363 QMHQLIEIFGDDVVLQFGGGTIGHPWGIAAGATANRV-ALEAMVQ 406 (450)
T ss_pred HHHHHHHhcCCceEEecCcceecCCCChhHHHHHHHH-HHHHHHH
Confidence 444555578999655 999999965 58899999997 9999776
No 122
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=50.98 E-value=1.5e+02 Score=29.64 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=60.0
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhh
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETR 321 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r 321 (434)
+.|..||.. +..+...-.+.|. +.|+|.+++-=|.+...+..+ .-.|.+++......-..-|. |
T Consensus 75 ~pvi~gv~~-----~t~~ai~~a~~a~-~~Gadav~~~pP~y~~~s~~~---------i~~~f~~v~~a~~~pvilYn-~ 138 (296)
T TIGR03249 75 VPVYTGVGG-----NTSDAIEIARLAE-KAGADGYLLLPPYLINGEQEG---------LYAHVEAVCESTDLGVIVYQ-R 138 (296)
T ss_pred CcEEEecCc-----cHHHHHHHHHHHH-HhCCCEEEECCCCCCCCCHHH---------HHHHHHHHHhccCCCEEEEe-C
Confidence 455667652 1333345556667 899999999999987766432 23344444332223334454 3
Q ss_pred hhhccchhhHHHHHHhhhcCCcEEEEecC-CCHHHHHHHHHHhCCceeE
Q psy4093 322 KADVKCRISSTLLDIMVKKKSNLCVALDV-TQAKDLLTLTRQLGPHIAV 369 (434)
Q Consensus 322 ~~~~~~~~~~~l~~~m~~k~s~LivAlD~-~~~~~al~la~~lgp~i~~ 369 (434)
+..+++-.++.-+.+.-+|++.-=|- .+.....++.+..++.+.+
T Consensus 139 ---~g~~l~~~~~~~La~~~~nvvgiKds~~d~~~~~~~~~~~~~~~~v 184 (296)
T TIGR03249 139 ---DNAVLNADTLERLADRCPNLVGFKDGIGDMEQMIEITQRLGDRLGY 184 (296)
T ss_pred ---CCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcCCCeEE
Confidence 23344544444443333454332242 4677888887777765433
No 123
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=50.69 E-value=47 Score=32.59 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=11.9
Q ss_pred HcCCCEEEeCCcccC
Q psy4093 270 LRGADLGVVGRGITQ 284 (434)
Q Consensus 270 ~~GAD~IVVGR~It~ 284 (434)
+.|||+|=||=.-+.
T Consensus 35 ~~GAdiIDvG~~st~ 49 (258)
T cd00423 35 EEGADIIDIGGESTR 49 (258)
T ss_pred HCCCCEEEECCCcCC
Confidence 789999999955543
No 124
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=50.53 E-value=11 Score=36.07 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=24.5
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCC
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQA 285 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A 285 (434)
+.|-.||+.. |..+.. ++|||.+|+|+.|.++
T Consensus 169 I~vDGGI~~~-----------~~~~~~-~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 169 IEVDGGINEE-----------NIKQLV-EAGADIFVAGSAIFKA 200 (201)
T ss_dssp EEEESSESTT-----------THHHHH-HHT--EEEESHHHHTS
T ss_pred EEEECCCCHH-----------HHHHHH-HcCCCEEEECHHHhCC
Confidence 3456888864 778889 9999999999998876
No 125
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=48.89 E-value=27 Score=34.53 Aligned_cols=46 Identities=26% Similarity=0.391 Sum_probs=37.9
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHH
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEV 298 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~ 298 (434)
++|--||+.. + ...+|. +.|+|-+-+--+|..|.||+..|+.+.-.
T Consensus 185 viVDAGiG~p--S--------dAa~aM-ElG~DaVL~NTAiA~A~DPv~MA~Af~~A 230 (262)
T COG2022 185 VIVDAGIGTP--S--------DAAQAM-ELGADAVLLNTAIARAKDPVAMARAFALA 230 (262)
T ss_pred EEEeCCCCCh--h--------HHHHHH-hcccceeehhhHhhccCChHHHHHHHHHH
Confidence 4667788754 2 236788 99999999999999999999999999863
No 126
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=48.81 E-value=27 Score=36.60 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=39.1
Q ss_pred HHHHhhcCCCCceEEeCccchh-----------------hcCCC-ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCE
Q psy4093 214 LKLAQSFPGLIAGLVCQAPSVL-----------------ASNPG-LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADL 275 (434)
Q Consensus 214 ~~lA~~a~~gv~GvVcs~~e~~-----------------~~~~~-~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~ 275 (434)
+++|.++ |++|++.|.+... ..+++ -+++.-|||= +.+.-.|+ ..|||.
T Consensus 238 A~~a~~~--Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~----------G~Dv~KAL-ALGA~a 304 (367)
T PLN02493 238 ARIAIQA--GAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRR----------GTDVFKAL-ALGASG 304 (367)
T ss_pred HHHHHHc--CCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCc----------HHHHHHHH-HcCCCE
Confidence 3344444 7999999986432 12222 2466777773 23456788 899999
Q ss_pred EEeCCcccC
Q psy4093 276 GVVGRGITQ 284 (434)
Q Consensus 276 IVVGR~It~ 284 (434)
+-||||+..
T Consensus 305 V~iGr~~l~ 313 (367)
T PLN02493 305 IFIGRPVVF 313 (367)
T ss_pred EEEcHHHHH
Confidence 999999984
No 127
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=48.50 E-value=3.1e+02 Score=29.27 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=34.0
Q ss_pred CCHHHHHHHcCCCEEE-eCCcccCCCC-HHHHHHHHHHHHHHHHHHH
Q psy4093 262 NGPTDVITLRGADLGV-VGRGITQAPD-PVEAARRYKEVMWEAYEQR 306 (434)
Q Consensus 262 ~TP~~Ai~~~GAD~IV-VGR~It~A~D-P~~aa~~i~~~~~~a~~~~ 306 (434)
.+..+.+...|.|+|. +|-+|...+| |.+-++.+|+ .|+|..+-
T Consensus 349 ~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rq-A~ea~~~g 394 (414)
T cd08206 349 GRMPALIEILGDDVILQFGGGTHGHPDGPAAGAKANRQ-ALEAWVQG 394 (414)
T ss_pred hHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHH-HHHHHHhC
Confidence 3444555588999665 9999999654 8889999997 99998753
No 128
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.36 E-value=79 Score=32.77 Aligned_cols=28 Identities=18% Similarity=-0.091 Sum_probs=23.9
Q ss_pred cCCHHHHHHHcCC--CEEEeCCcccCCCCHH
Q psy4093 261 YNGPTDVITLRGA--DLGVVGRGITQAPDPV 289 (434)
Q Consensus 261 ~~TP~~Ai~~~GA--D~IVVGR~It~A~DP~ 289 (434)
..+...|+ ++|| .-+.+||.|.+...+.
T Consensus 257 ~~~l~~A~-~aGa~f~Gvl~GRniwq~~v~~ 286 (340)
T PRK12858 257 RRTLEFAC-EAGADFSGVLCGRATWQDGIEP 286 (340)
T ss_pred HHHHHHHH-HcCCCccchhhhHHHHhhhhcc
Confidence 35888999 9999 8999999999877664
No 129
>PLN02535 glycolate oxidase
Probab=46.87 E-value=35 Score=35.67 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=37.8
Q ss_pred HHHHhhcCCCCceEEeCccchh-----------------hcCC-CceEecCcccccCCCCCCCCccCCHHHHHHHcCCCE
Q psy4093 214 LKLAQSFPGLIAGLVCQAPSVL-----------------ASNP-GLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADL 275 (434)
Q Consensus 214 ~~lA~~a~~gv~GvVcs~~e~~-----------------~~~~-~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~ 275 (434)
++.|..+ |+|||+.|.+... ..+. --++..-|||-. .+.-.|+ ..|||.
T Consensus 237 A~~a~~~--GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g----------~Dv~KAL-alGA~a 303 (364)
T PLN02535 237 AIKAVEV--GVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRG----------TDVFKAL-ALGAQA 303 (364)
T ss_pred HHHHHhc--CCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCH----------HHHHHHH-HcCCCE
Confidence 3344444 7999988853221 2221 224566777732 3446688 899999
Q ss_pred EEeCCcccCC
Q psy4093 276 GVVGRGITQA 285 (434)
Q Consensus 276 IVVGR~It~A 285 (434)
+.|||+...+
T Consensus 304 V~vGr~~l~~ 313 (364)
T PLN02535 304 VLVGRPVIYG 313 (364)
T ss_pred EEECHHHHhh
Confidence 9999999864
No 130
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=46.31 E-value=1.8e+02 Score=28.65 Aligned_cols=130 Identities=19% Similarity=0.247 Sum_probs=66.9
Q ss_pred CCceEEeCcc--chh----------------hcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccC
Q psy4093 223 LIAGLVCQAP--SVL----------------ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQ 284 (434)
Q Consensus 223 gv~GvVcs~~--e~~----------------~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~ 284 (434)
|++|+++.+. |.. ..+.+ ..|..||... +..+...-...|. +.|+|.+.|.-|.+.
T Consensus 35 Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~-~~vi~gv~~~----st~~~i~~a~~a~-~~Gad~v~v~~P~~~ 108 (289)
T PF00701_consen 35 GVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGR-VPVIAGVGAN----STEEAIELARHAQ-DAGADAVLVIPPYYF 108 (289)
T ss_dssp TSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTS-SEEEEEEESS----SHHHHHHHHHHHH-HTT-SEEEEEESTSS
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCc-eEEEecCcch----hHHHHHHHHHHHh-hcCceEEEEeccccc
Confidence 7999987662 221 23334 3455677742 2222233445566 899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhhhhhccchhhHHHHHHhhhcCCcEEEEe-c-CCCHHHHHHHHHH
Q psy4093 285 APDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVAL-D-VTQAKDLLTLTRQ 362 (434)
Q Consensus 285 A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~LivAl-D-~~~~~~al~la~~ 362 (434)
..++.+..+ |.+.+....+.-..-|-. -..+.+.++-.++.-+.+ -+|++ ++ | ..+.....++.+.
T Consensus 109 ~~s~~~l~~---------y~~~ia~~~~~pi~iYn~-P~~tg~~ls~~~l~~L~~-~~nv~-giK~s~~~~~~~~~~~~~ 176 (289)
T PF00701_consen 109 KPSQEELID---------YFRAIADATDLPIIIYNN-PARTGNDLSPETLARLAK-IPNVV-GIKDSSGDLERLIQLLRA 176 (289)
T ss_dssp SCCHHHHHH---------HHHHHHHHSSSEEEEEEB-HHHHSSTSHHHHHHHHHT-STTEE-EEEESSSBHHHHHHHHHH
T ss_pred cchhhHHHH---------HHHHHHhhcCCCEEEEEC-CCccccCCCHHHHHHHhc-CCcEE-EEEcCchhHHHHHHHhhh
Confidence 888765433 334443222222222332 112334444433333333 44433 44 2 2345666777777
Q ss_pred hCCceeEE
Q psy4093 363 LGPHIAVL 370 (434)
Q Consensus 363 lgp~i~~l 370 (434)
.++.+.++
T Consensus 177 ~~~~~~v~ 184 (289)
T PF00701_consen 177 VGPDFSVF 184 (289)
T ss_dssp SSTTSEEE
T ss_pred cccCeeee
Confidence 66666443
No 131
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=46.13 E-value=35 Score=33.20 Aligned_cols=52 Identities=33% Similarity=0.564 Sum_probs=36.5
Q ss_pred cCCCceEec----CcccccCCCCCCCCccCCHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 237 SNPGLLQLT----PGIHLNQTGDNKGQQYNGPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 237 ~~~~~l~vt----PGIr~~~~~~~~~dQ~~TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
..|+|.+|. +|+++-..| ++.||++| + +.||+-+|||-.||. |.+..+.+.+
T Consensus 166 ~~pDf~lvk~l~~~~~~vIAEG-----r~~tP~~Ak~a~-~~Ga~aVvVGsAITR---p~~It~~F~~ 224 (229)
T COG3010 166 TEPDFQLVKQLSDAGCRVIAEG-----RYNTPEQAKKAI-EIGADAVVVGSAITR---PEEITQWFVD 224 (229)
T ss_pred CCCcHHHHHHHHhCCCeEEeeC-----CCCCHHHHHHHH-HhCCeEEEECcccCC---HHHHHHHHHH
Confidence 456665542 677754212 37888876 5 789999999999995 7777777765
No 132
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=46.09 E-value=24 Score=31.90 Aligned_cols=60 Identities=15% Similarity=-0.049 Sum_probs=35.3
Q ss_pred CCceEEeCccchh----hcCCCceEecCcccccCCCCC--CCCccCCHHHHHHHcCCCEEEeCCcccCC
Q psy4093 223 LIAGLVCQAPSVL----ASNPGLLQLTPGIHLNQTGDN--KGQQYNGPTDVITLRGADLGVVGRGITQA 285 (434)
Q Consensus 223 gv~GvVcs~~e~~----~~~~~~l~vtPGIr~~~~~~~--~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A 285 (434)
|++|+++.+.-.+ .....-+.+.-||... ... ..+-....++|. +.|||.+.+-=|.+..
T Consensus 26 gv~gi~~~g~~i~~~~~~~~~~~~~v~~~v~~~--~~~~~~~~~~~~a~~a~-~~Gad~i~v~~~~~~~ 91 (201)
T cd00945 26 GFAAVCVNPGYVRLAADALAGSDVPVIVVVGFP--TGLTTTEVKVAEVEEAI-DLGADEIDVVINIGSL 91 (201)
T ss_pred CCcEEEECHHHHHHHHHHhCCCCCeEEEEecCC--CCCCcHHHHHHHHHHHH-HcCCCEEEEeccHHHH
Confidence 7999988884433 2222023344455532 111 111145678888 9999999997676544
No 133
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=45.71 E-value=17 Score=34.57 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=23.6
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAAR 293 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~ 293 (434)
+..+++ +.|||.++||+.|.+..+|.+.+.
T Consensus 187 ~~~~~l-~~GadgV~iGsai~~~~~~~~~~~ 216 (221)
T PRK01130 187 QAKKAL-ELGAHAVVVGGAITRPEEITKWFV 216 (221)
T ss_pred HHHHHH-HCCCCEEEEchHhcCCHHHHHHHH
Confidence 346677 899999999999998777766443
No 134
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=45.11 E-value=2.6e+02 Score=28.72 Aligned_cols=43 Identities=2% Similarity=-0.035 Sum_probs=27.1
Q ss_pred cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHH
Q psy4093 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELT 389 (434)
Q Consensus 343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~ 389 (434)
++++.=++.+.+++.++.+.= .+-++=+|--++. .|+++++++
T Consensus 278 PVi~~G~i~~~~~a~~~i~~g--~~D~V~~gR~~l~--dP~~~~k~~ 320 (353)
T cd02930 278 PVIASNRINTPEVAERLLADG--DADMVSMARPFLA--DPDFVAKAA 320 (353)
T ss_pred CEEEcCCCCCHHHHHHHHHCC--CCChhHhhHHHHH--CccHHHHHH
Confidence 467777899999999988742 2323333333333 377887775
No 135
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=44.96 E-value=2.7e+02 Score=27.91 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.1
Q ss_pred CHHHHHHHcCCCEEEeCCcccCC
Q psy4093 263 GPTDVITLRGADLGVVGRGITQA 285 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A 285 (434)
+...|+ ..|||.+-||||...+
T Consensus 241 d~~kal-~lGAd~V~ig~~~l~~ 262 (299)
T cd02809 241 DVLKAL-ALGADAVLIGRPFLYG 262 (299)
T ss_pred HHHHHH-HcCCCEEEEcHHHHHH
Confidence 446678 8999999999988754
No 136
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.92 E-value=1.5e+02 Score=31.88 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=56.0
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccChhhh------------hhhccc-hhhHHHHHHhhhcCCcEE
Q psy4093 279 GRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETR------------KADVKC-RISSTLLDIMVKKKSNLC 345 (434)
Q Consensus 279 GR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~~~~~~~~~r------------~~~~~~-~~~~~l~~~m~~k~s~Li 345 (434)
|--+..+-+|.+..-+|..++. .+-++..++.+.+. ..+ .+-+++ .+|++|-+ +++.-+.
T Consensus 61 g~ev~~~l~p~q~~iKiV~eEL---v~llG~~~~~~~l~-~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvll 133 (451)
T COG0541 61 GEEVPKGLTPGQQFIKIVYEEL---VKLLGGENSELNLA-KKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLL 133 (451)
T ss_pred cccCCCCCCHHHHHHHHHHHHH---HHHhCCCCcccccC-CCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEE
Confidence 6667777889888877776444 33344344444443 111 111122 24443432 4566799
Q ss_pred EEecCCCHHHHHHHHHHhCCceeEEeEceeeeecC-C--H-HHHHHHHHHHhcCCC
Q psy4093 346 VALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDF-S--E-EVQKELTALAKQHEF 397 (434)
Q Consensus 346 vAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~-g--~-~~v~~L~~la~k~gf 397 (434)
||+|+--++...+|.. |+. ++|+++|... + | +++++-.+-|+++++
T Consensus 134 VaaD~~RpAA~eQL~~-La~-----q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~ 183 (451)
T COG0541 134 VAADTYRPAAIEQLKQ-LAE-----QVGVPFFGSGTEKDPVEIAKAALEKAKEEGY 183 (451)
T ss_pred EecccCChHHHHHHHH-HHH-----HcCCceecCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999988765555432 222 2346666652 2 2 244444444555543
No 137
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=44.38 E-value=33 Score=36.15 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=41.0
Q ss_pred CCceEEeCccchh-----------------hcCC-CceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccC
Q psy4093 223 LIAGLVCQAPSVL-----------------ASNP-GLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQ 284 (434)
Q Consensus 223 gv~GvVcs~~e~~-----------------~~~~-~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~ 284 (434)
|++|+|.|.+.-. .++. --+++.-|||= +.+...|+ ..|||.+-||||...
T Consensus 274 G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~----------G~Dv~KAL-aLGA~~v~iGr~~l~ 342 (383)
T cd03332 274 GVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRT----------GADIMKAL-ALGAKAVLIGRPYAY 342 (383)
T ss_pred CCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCc----------HHHHHHHH-HcCCCEEEEcHHHHH
Confidence 7999998875221 2222 22456677773 24567888 899999999999985
Q ss_pred C--CCHHHHHHHHHH
Q psy4093 285 A--PDPVEAARRYKE 297 (434)
Q Consensus 285 A--~DP~~aa~~i~~ 297 (434)
+ .+-.+.++++.+
T Consensus 343 ~l~~~G~~gv~~~l~ 357 (383)
T cd03332 343 GLALGGEDGVEHVLR 357 (383)
T ss_pred HHHhccHHHHHHHHH
Confidence 3 334444444443
No 138
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=43.86 E-value=58 Score=34.54 Aligned_cols=123 Identities=17% Similarity=0.100 Sum_probs=72.8
Q ss_pred EeCCcccCCC-------CHHHHHHHHHHHHHHHHH---HHHhhcccccccChhhhhhhccchhhHHHHHHhhhcCC-cEE
Q psy4093 277 VVGRGITQAP-------DPVEAARRYKEVMWEAYE---QRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKS-NLC 345 (434)
Q Consensus 277 VVGR~It~A~-------DP~~aa~~i~~~~~~a~~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s-~Li 345 (434)
|-||||+..- +|.+-++...+ .|..-. |.=++.+|.-..+|++|....|-.+-+.=-++ -+|+- -+=
T Consensus 152 v~~RPLlgtivKPklGl~~e~~a~~~yE-~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeT-Gekk~y~~N 229 (429)
T COG1850 152 VKGRPLLGTIVKPKLGLSPEEYAELAYE-LLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAET-GEKKMYAVN 229 (429)
T ss_pred cCCCcccccccCcccCCCHHHHHHHHHH-HHhcCcceecchhhccCcccccHHHHHHHHHHHHHHHHHhh-CceEEEEee
Confidence 4588888753 46666666654 665533 33378999999999999875543222211111 11111 111
Q ss_pred EEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCc
Q psy4093 346 VALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSP 407 (434)
Q Consensus 346 vAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~D 407 (434)
+..+..++..=.++|..+|..+.| +|++. .|...++.|.+. +..|+.|.-=+-.|+
T Consensus 230 ITa~~~EM~rrae~a~elG~~~~m----idi~~-~G~~a~q~lre~-~d~gl~ihaHramh~ 285 (429)
T COG1850 230 ITAPCEEMMRRAELAAELGANYVM----IDIVV-TGFTALQYLRED-EDIGLAIHAHRAMHA 285 (429)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEE----EEEEe-cccHHHHHHHhc-ccCCceEEechhhhh
Confidence 223455555666788889988887 45554 567777777654 345676666555444
No 139
>KOG1144|consensus
Probab=43.08 E-value=1e+02 Score=35.57 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=74.8
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhh-------cccccccChhhhhhhc---c------
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKK-------ENSRIVTPFETRKADV---K------ 326 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~-------~~~~~~~~~~~r~~~~---~------ 326 (434)
..+-|| +|.-+.|||+ +|-.++.+.-..+..+..+.|+.. |+| ...|++.=.+.. .
T Consensus 781 ~LEkai--aG~~l~Vvgp-----eDd~e~lk~~~m~dl~~~l~~Id~sgeGv~vqas-tlgslealleflk~~kIPv~gi 852 (1064)
T KOG1144|consen 781 DLEKAI--AGTRLLVVGP-----EDDIEELKEEAMEDLESVLSRIDKSGEGVYVQAS-TLGSLEALLEFLKTVKIPVSGI 852 (1064)
T ss_pred chHHHh--cCCeeEEeCC-----cccHHHHHHHHHHHHHHHHHHhhccCCceEEEec-ccchHHHHHHHHhhcCcccccc
Confidence 567777 8999999986 344444444444466677777622 233 233343322211 0
Q ss_pred --chhhHH-HH--HHhhhcCC--cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHH
Q psy4093 327 --CRISST-LL--DIMVKKKS--NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALA 392 (434)
Q Consensus 327 --~~~~~~-l~--~~m~~k~s--~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la 392 (434)
-|+-++ .. ..|..++. -.|+|.||-=..+|..||+..|-.|---.|=..||..| ...++.+++-.
T Consensus 853 ~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f-~~y~e~~ke~k 924 (1064)
T KOG1144|consen 853 GIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAF-TKYIEEIKEEK 924 (1064)
T ss_pred cccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHHHHHH-HHHHHHHHHHH
Confidence 133333 22 23666543 37888999999999999999998887777766777776 34667776543
No 140
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.02 E-value=1.1e+02 Score=32.68 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=53.6
Q ss_pred EEEEecCCCHHHHHHHHHHhCCceeEEeEcee--------eeecCCH---HHHHHHHHHHhcCCCeeeecCCCCcchhHH
Q psy4093 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSD--------AVRDFSE---EVQKELTALAKQHEFLRSRNGWFSPILSSF 412 (434)
Q Consensus 344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~d--------l~~~~g~---~~v~~L~~la~k~gf~iFlDlKf~DIpnTV 412 (434)
.+++-|+.+.++++.+.+. | +-++|+|.. ....+|. ..+..+.+++++.+.+|+-|..++. |.-+
T Consensus 196 ~vi~g~V~T~e~a~~l~~a-G--aD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~-~~Di 271 (404)
T PRK06843 196 DLIAGNIVTKEAALDLISV-G--ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRF-SGDV 271 (404)
T ss_pred cEEEEecCCHHHHHHHHHc-C--CCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCC-HHHH
Confidence 4678899999999999884 3 445667752 2234442 2555566666677899999999988 6667
Q ss_pred HHHhhcCccccc
Q psy4093 413 SLRFRDDKTLAM 424 (434)
Q Consensus 413 ~~a~~~~~~~~~ 424 (434)
.+|+.-|-+--|
T Consensus 272 ~KALalGA~aVm 283 (404)
T PRK06843 272 VKAIAAGADSVM 283 (404)
T ss_pred HHHHHcCCCEEE
Confidence 777777755443
No 141
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=42.89 E-value=45 Score=33.09 Aligned_cols=63 Identities=14% Similarity=0.317 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcccccccChhhhhhhccchhhHHHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCcee
Q psy4093 299 MWEAYEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIA 368 (434)
Q Consensus 299 ~~~a~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~ 368 (434)
.| ..-|.+..++-++..+|... .+-+|+-++.+...+.+++.+||++-+++.++.++++.+.+
T Consensus 21 Aw-GIAk~l~~~GAeL~fTy~~e------~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g 83 (259)
T COG0623 21 AW-GIAKALAEQGAELAFTYQGE------RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWG 83 (259)
T ss_pred HH-HHHHHHHHcCCEEEEEeccH------HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhC
Confidence 56 45566777888888888875 35567777777777889999999999999999999999988
No 142
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.27 E-value=17 Score=35.90 Aligned_cols=59 Identities=24% Similarity=0.185 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcch
Q psy4093 351 TQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPIL 409 (434)
Q Consensus 351 ~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIp 409 (434)
.....+..+.+..|++|-++|+|--...=...+++++..+++++||..++....|..+.
T Consensus 22 lg~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a 80 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVA 80 (244)
T ss_dssp --HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHH
T ss_pred CCHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHH
Confidence 45788889999999999999999776666678899999999999999999988766553
No 143
>PLN02417 dihydrodipicolinate synthase
Probab=41.86 E-value=80 Score=31.37 Aligned_cols=45 Identities=7% Similarity=0.006 Sum_probs=28.5
Q ss_pred CceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHH
Q psy4093 240 GLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPV 289 (434)
Q Consensus 240 ~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~ 289 (434)
+.+.|..||... +..+...-.+.|. +.|||.+++-=|.+...++.
T Consensus 69 ~~~pvi~gv~~~----~t~~~i~~a~~a~-~~Gadav~~~~P~y~~~~~~ 113 (280)
T PLN02417 69 GKIKVIGNTGSN----STREAIHATEQGF-AVGMHAALHINPYYGKTSQE 113 (280)
T ss_pred CCCcEEEECCCc----cHHHHHHHHHHHH-HcCCCEEEEcCCccCCCCHH
Confidence 334556676632 2222233445566 89999999999998876653
No 144
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=41.42 E-value=1.3e+02 Score=34.51 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCEEEeCCcccCCCC
Q psy4093 264 PTDVITLRGADLGVVGRGITQAPD 287 (434)
Q Consensus 264 P~~Ai~~~GAD~IVVGR~It~A~D 287 (434)
..+++.+.++|++-+||+....+|
T Consensus 702 a~~~l~~g~~D~v~~gR~~l~dP~ 725 (765)
T PRK08255 702 VNSIIAAGRADLCALARPHLADPA 725 (765)
T ss_pred HHHHHHcCCcceeeEcHHHHhCcc
Confidence 356673345999999999998776
No 145
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=41.34 E-value=44 Score=35.04 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=43.5
Q ss_pred HHHHHhhcCCCCceEEeCccchh-----------------hcCC-CceEecCcccccCCCCCCCCccCCHHHHHHHcCCC
Q psy4093 213 TLKLAQSFPGLIAGLVCQAPSVL-----------------ASNP-GLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGAD 274 (434)
Q Consensus 213 v~~lA~~a~~gv~GvVcs~~e~~-----------------~~~~-~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD 274 (434)
.+++|.++ |++|++.|.+--. +.++ --+++.-|||-. .+.-.|+ ..|||
T Consensus 241 da~~a~~~--Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g----------~Dv~KaL-alGAd 307 (367)
T TIGR02708 241 DADRALKA--GASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRG----------QHVFKAL-ASGAD 307 (367)
T ss_pred HHHHHHHc--CcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCH----------HHHHHHH-HcCCC
Confidence 34444444 7999988874211 2222 234666777732 3456788 89999
Q ss_pred EEEeCCcccCC--CCHHHHHHHHHH
Q psy4093 275 LGVVGRGITQA--PDPVEAARRYKE 297 (434)
Q Consensus 275 ~IVVGR~It~A--~DP~~aa~~i~~ 297 (434)
.+-||||...+ .+=.+.++++.+
T Consensus 308 ~V~igR~~l~~la~~G~~gv~~~l~ 332 (367)
T TIGR02708 308 LVALGRPVIYGLALGGSQGARQVFE 332 (367)
T ss_pred EEEEcHHHHHHHHhcCHHHHHHHHH
Confidence 99999997774 333344444443
No 146
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.01 E-value=28 Score=33.55 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=25.5
Q ss_pred CHHHHHHHcCCCEEEeCCcccCC------CCHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQA------PDPVEAARRYKE 297 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A------~DP~~aa~~i~~ 297 (434)
+..+.+ ++|++.+.||..|+.+ +++.+.++++++
T Consensus 168 N~~~~l-~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~ 207 (213)
T PRK06552 168 NVKDWF-AAGADAVGIGGELNKLASQGDFDLITEKAKKYMS 207 (213)
T ss_pred HHHHHH-HCCCcEEEEchHHhCccccCCHHHHHHHHHHHHH
Confidence 557888 9999999999999887 345555555443
No 147
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=39.17 E-value=2.4e+02 Score=29.32 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=20.6
Q ss_pred CHHHHHHHcC-CCEEEeCCcccCCCCHH
Q psy4093 263 GPTDVITLRG-ADLGVVGRGITQAPDPV 289 (434)
Q Consensus 263 TP~~Ai~~~G-AD~IVVGR~It~A~DP~ 289 (434)
+.++++ +.| +|++-+||+...-+|=+
T Consensus 305 ~ae~~i-~~G~~D~V~~gR~~iadPd~~ 331 (362)
T PRK10605 305 KAETLI-GKGLIDAVAFGRDYIANPDLV 331 (362)
T ss_pred HHHHHH-HcCCCCEEEECHHhhhCccHH
Confidence 346678 666 99999999999988744
No 148
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=38.25 E-value=4.1e+02 Score=26.37 Aligned_cols=43 Identities=9% Similarity=-0.136 Sum_probs=28.1
Q ss_pred ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCH
Q psy4093 241 LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDP 288 (434)
Q Consensus 241 ~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP 288 (434)
-+.|..||... +..+-+.-.+.|. +.|+|.++|--|.+...++
T Consensus 73 ~~~viagvg~~----~t~~ai~~a~~a~-~~Gad~v~v~~P~y~~~~~ 115 (293)
T PRK04147 73 KVKLIAQVGSV----NTAEAQELAKYAT-ELGYDAISAVTPFYYPFSF 115 (293)
T ss_pred CCCEEecCCCC----CHHHHHHHHHHHH-HcCCCEEEEeCCcCCCCCH
Confidence 34566777632 1112233345666 8999999999999987664
No 149
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=38.10 E-value=48 Score=32.74 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=24.9
Q ss_pred ceEecCcccccCCCCCCCCccCCHHHH--HHHcCCCEEEeCCcccCCC
Q psy4093 241 LLQLTPGIHLNQTGDNKGQQYNGPTDV--ITLRGADLGVVGRGITQAP 286 (434)
Q Consensus 241 ~l~vtPGIr~~~~~~~~~dQ~~TP~~A--i~~~GAD~IVVGR~It~A~ 286 (434)
.+++=.|||- |++| +-++|||.||+|--|+++.
T Consensus 193 ~LivGGGIrs-------------~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 193 PLIVGGGIRS-------------PEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred eEEEcCCcCC-------------HHHHHHHHHcCCCEEEECceeecCH
Confidence 6677788883 3444 2257999999999999876
No 150
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=36.69 E-value=15 Score=32.76 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=16.9
Q ss_pred cCccccccceecccchhhhc
Q psy4093 71 DFGVGYDFDSVMHYSRKAFS 90 (434)
Q Consensus 71 ~~g~pYDy~SVMhYg~~aFs 90 (434)
.++.+|+++|||||....|+
T Consensus 129 ~~~~~~~~~siM~y~~~~~~ 148 (167)
T cd00203 129 LNAEDDDYYSVMSYTKGSFS 148 (167)
T ss_pred ccCCCCCCCeEeccCccccC
Confidence 46779999999999887765
No 151
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=36.58 E-value=1e+02 Score=30.88 Aligned_cols=107 Identities=8% Similarity=-0.067 Sum_probs=53.5
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhccc-ccccChhh
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENS-RIVTPFET 320 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~~-~~~~~~~~ 320 (434)
+.|..||.-. +..+-..--+.|. +.|+|.++|.-|.+...++. +.-+|.+++....+ .-..-|-.
T Consensus 71 ~pvi~gv~~~----~t~~~i~la~~a~-~~Gad~v~v~~P~y~~~~~~---------~i~~yf~~v~~~~~~lpv~lYn~ 136 (290)
T TIGR00683 71 IALIAQVGSV----NLKEAVELGKYAT-ELGYDCLSAVTPFYYKFSFP---------EIKHYYDTIIAETGGLNMIVYSI 136 (290)
T ss_pred CcEEEecCCC----CHHHHHHHHHHHH-HhCCCEEEEeCCcCCCCCHH---------HHHHHHHHHHhhCCCCCEEEEeC
Confidence 4566676632 1111233345556 89999999999999887753 33455555543321 22223321
Q ss_pred hhhhccchhhHHHHHHhhhcCCcEEEEe-c-CCCHHHHHHHHHHhCC
Q psy4093 321 RKADVKCRISSTLLDIMVKKKSNLCVAL-D-VTQAKDLLTLTRQLGP 365 (434)
Q Consensus 321 r~~~~~~~~~~~l~~~m~~k~s~LivAl-D-~~~~~~al~la~~lgp 365 (434)
= ..+..+++-.++.-+.+ .+|+ +++ | ..+.....++.+..++
T Consensus 137 P-~~tg~~l~~~~i~~L~~-~pnv-~giK~s~~d~~~~~~~~~~~~~ 180 (290)
T TIGR00683 137 P-FLTGVNMGIEQFGELYK-NPKV-LGVKFTAGDFYLLERLKKAYPN 180 (290)
T ss_pred c-cccccCcCHHHHHHHhc-CCCE-EEEEeCCCCHHHHHHHHHhCCC
Confidence 0 01233333333332222 3553 444 3 2355666666665543
No 152
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=36.53 E-value=36 Score=29.58 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCC---ceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeee---cCCCCcchhHHHHHh
Q psy4093 354 KDLLTLTRQLGP---HIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSR---NGWFSPILSSFSLRF 416 (434)
Q Consensus 354 ~~al~la~~lgp---~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFl---DlKf~DIpnTV~~a~ 416 (434)
++..++++.+.. .-.++|+|- .+.. +-+++.++|++++|+||+ +.-|.||-++|..++
T Consensus 59 ~~~~~~i~~L~~~~~agL~i~~~~-~~~~----iP~~~i~~A~~~~lPli~ip~~~~f~~I~~~v~~~I 122 (123)
T PF07905_consen 59 EELREFIRELAEKGAAGLGIKTGR-YLDE----IPEEIIELADELGLPLIEIPWEVPFSDITREVMRAI 122 (123)
T ss_pred HHHHHHHHHHHHCCCeEEEEeccC-cccc----CCHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHh
Confidence 345555555543 223455552 2222 334455667889999996 888889888887764
No 153
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=36.46 E-value=21 Score=33.93 Aligned_cols=27 Identities=30% Similarity=0.323 Sum_probs=23.0
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVE 290 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~ 290 (434)
+..+++ +.|||.++||+.|.+++||..
T Consensus 191 ~~~~~l-~~GadgV~vGsal~~~~~~~~ 217 (219)
T cd04729 191 QAAKAL-ELGADAVVVGSAITRPEHITG 217 (219)
T ss_pred HHHHHH-HCCCCEEEEchHHhChHhHhh
Confidence 346677 899999999999999999863
No 154
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=35.26 E-value=2.2e+02 Score=29.74 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=19.5
Q ss_pred HHHHHHHcC-CCEEEeCCcccCCCCHH
Q psy4093 264 PTDVITLRG-ADLGVVGRGITQAPDPV 289 (434)
Q Consensus 264 P~~Ai~~~G-AD~IVVGR~It~A~DP~ 289 (434)
-.+++ +.| +|++-+||+.+..+|=.
T Consensus 320 ~~~~l-~~g~~D~V~~gR~~ladP~l~ 345 (382)
T cd02931 320 ASEAI-NEGIADMISLGRPLLADPDVV 345 (382)
T ss_pred HHHHH-HcCCCCeeeechHhHhCccHH
Confidence 35667 554 99999999999988744
No 155
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=35.07 E-value=76 Score=30.82 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCHHHHHH-----HcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093 262 NGPTDVIT-----LRGADLGVVGRGITQAPDPVEAARRY 295 (434)
Q Consensus 262 ~TP~~Ai~-----~~GAD~IVVGR~It~A~DP~~aa~~i 295 (434)
.|++++.. +.|+|-++|||+++...-+.+.+.++
T Consensus 200 ~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 200 SSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred CCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHHH
Confidence 46777661 13999999999999999888877655
No 156
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.69 E-value=85 Score=32.33 Aligned_cols=28 Identities=39% Similarity=0.595 Sum_probs=22.3
Q ss_pred HHHHHHHcCCCEEEeCCcccCCCCHHHHH
Q psy4093 264 PTDVITLRGADLGVVGRGITQAPDPVEAA 292 (434)
Q Consensus 264 P~~Ai~~~GAD~IVVGR~It~A~DP~~aa 292 (434)
-++++ +.|+|.+-+||+++..+|-...+
T Consensus 299 ae~~l-~~gaD~V~~gR~liadPdl~~k~ 326 (353)
T cd04735 299 ALEAL-ETGADLVAIGRGLLVDPDWVEKI 326 (353)
T ss_pred HHHHH-HcCCChHHHhHHHHhCccHHHHH
Confidence 35667 67999999999999998865443
No 157
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.40 E-value=2.8e+02 Score=29.11 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=21.5
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCC-CHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAP-DPVE 290 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~-DP~~ 290 (434)
....|+ .+|||.+.+|+++..++ -|.+
T Consensus 270 diakAl-alGAd~Vm~Gs~fa~t~Espg~ 297 (368)
T PRK08649 270 DIAKAI-ACGADAVMLGSPLARAAEAPGR 297 (368)
T ss_pred HHHHHH-HcCCCeecccchhcccccCCCc
Confidence 457788 89999999999999854 3544
No 158
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=34.31 E-value=2.1e+02 Score=31.17 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccccceEEEcccCC--chhHHHHHHHhhhhCCCCceEEEE--EeCCCCCCChHHHHhhcchhhHHHHHh
Q psy4093 120 GAAVGHQFRLIGEWAHLVTVHSIAG--PGPLQEIQRISDELGEDRGVFLIA--QLSCQGNLIDEKYTQVGFKAITLELKK 195 (434)
Q Consensus 120 ~nTv~~~~~~~~~~~d~vTvH~~~G--~~ml~~a~~~~~~~~~~~~v~~v~--~lss~~sl~~~~~~~~g~~~~~~~~~~ 195 (434)
+.....+...+..++|++.+-..-| ..+++...+..+... .+.+++ ++|-
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~---~~~v~aG~V~t~----------------------- 293 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYP---HVDIIAGNVVTA----------------------- 293 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCC---CceEEECCcCCH-----------------------
Q ss_pred hhccCCCCCCCCchHHHHHHHHhhcCCCCceE---EeCc-------------------cchh-hcCCCceEecC--cccc
Q psy4093 196 YLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL---VCQA-------------------PSVL-ASNPGLLQLTP--GIHL 250 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~Gv---Vcs~-------------------~e~~-~~~~~~l~vtP--GIr~ 250 (434)
.-++.+..+ |+|++ |.++ .++. .+...-+.+.| ||+-
T Consensus 294 ----------------~~a~~~~~a--Gad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~ 355 (495)
T PTZ00314 294 ----------------DQAKNLIDA--GADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKN 355 (495)
T ss_pred ----------------HHHHHHHHc--CCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCC
Q ss_pred cCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCC
Q psy4093 251 NQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAP 286 (434)
Q Consensus 251 ~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~ 286 (434)
. .....|+ .+|||.+.+|+.++...
T Consensus 356 ~----------~di~kAl-a~GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 356 S----------GDICKAL-ALGADCVMLGSLLAGTE 380 (495)
T ss_pred H----------HHHHHHH-HcCCCEEEECchhcccc
No 159
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=33.96 E-value=2.8e+02 Score=27.41 Aligned_cols=61 Identities=23% Similarity=0.205 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHhCCceeEE----eEceeeeecCCHHHHHHHHHHHhcCCCeeee--cCCCCcchhHH
Q psy4093 352 QAKDLLTLTRQLGPHIAVL----KTHSDAVRDFSEEVQKELTALAKQHEFLRSR--NGWFSPILSSF 412 (434)
Q Consensus 352 ~~~~al~la~~lgp~i~~l----Kvg~dl~~~~g~~~v~~L~~la~k~gf~iFl--DlKf~DIpnTV 412 (434)
++-++..++.+.|=...|+ |-|--||.-.+.+...++.+.++++|.+.=| =|++-|||.-.
T Consensus 132 ~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~ 198 (235)
T PF04476_consen 132 SPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSLRFEDIPRLK 198 (235)
T ss_pred CHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccCChhHHHHHH
Confidence 4556777778888777765 6677788777888777777778888876554 46777777543
No 160
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=33.65 E-value=54 Score=34.07 Aligned_cols=79 Identities=19% Similarity=0.121 Sum_probs=46.3
Q ss_pred HHHHHhhcCCCCceEEeCcc----------------chh-hcCCC-ceEecCcccccCCCCCCCCccCCHHHHHHHcCCC
Q psy4093 213 TLKLAQSFPGLIAGLVCQAP----------------SVL-ASNPG-LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGAD 274 (434)
Q Consensus 213 v~~lA~~a~~gv~GvVcs~~----------------e~~-~~~~~-~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD 274 (434)
-++++.++ |++|++.|.+ |+. +.+++ .+++.-|||=. .+.-.|+ ..|||
T Consensus 238 da~~~~~~--G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g----------~Dv~kal-aLGA~ 304 (356)
T PF01070_consen 238 DAKRAVDA--GVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRG----------LDVAKAL-ALGAD 304 (356)
T ss_dssp HHHHHHHT--T-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SH----------HHHHHHH-HTT-S
T ss_pred HHHHHHhc--CCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCH----------HHHHHHH-HcCCC
Confidence 34444444 7999999863 111 34433 45778999942 3456788 89999
Q ss_pred EEEeCCcccCCC--CHHHHHHHHHHHHHHHHHH
Q psy4093 275 LGVVGRGITQAP--DPVEAARRYKEVMWEAYEQ 305 (434)
Q Consensus 275 ~IVVGR~It~A~--DP~~aa~~i~~~~~~a~~~ 305 (434)
.+-+|||+..+- +-.+.++++.+ .|+.-++
T Consensus 305 ~v~igr~~l~~l~~~g~~gv~~~~~-~l~~el~ 336 (356)
T PF01070_consen 305 AVGIGRPFLYALAAGGEEGVERVLE-ILKEELK 336 (356)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred eEEEccHHHHHHHHhhHHHHHHHHH-HHHHHHH
Confidence 999999998853 45555555554 3433333
No 161
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=32.75 E-value=2e+02 Score=28.08 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=24.6
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCC
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAP 286 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~ 286 (434)
+.+.-|||-. ....+++ ..|+|.+|||+.....+
T Consensus 77 v~~~GGi~s~----------~d~~~~~-~~Ga~~vivgt~~~~~p 110 (254)
T TIGR00735 77 LTVGGGIKSI----------EDVDKLL-RAGADKVSINTAAVKNP 110 (254)
T ss_pred EEEECCCCCH----------HHHHHHH-HcCCCEEEEChhHhhCh
Confidence 4667788832 1335577 79999999999998743
No 162
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=32.62 E-value=43 Score=32.88 Aligned_cols=44 Identities=30% Similarity=0.391 Sum_probs=29.8
Q ss_pred ceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 241 LLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 241 ~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
.+++--|||-. .+.++++ .+|||.+|||-.+.. ||.+..+++++
T Consensus 186 pvivGGGIrs~----------e~a~~~l-~~GAD~VVVGSai~~--d~~~~~~~~~~ 229 (232)
T PRK04169 186 PLIYGGGIRSP----------EQARELM-AAGADTIVVGNIIEE--DPKKTVKAIKK 229 (232)
T ss_pred cEEEECCCCCH----------HHHHHHH-HhCCCEEEEChHHhh--CHHHHHHHHHh
Confidence 44566667632 1234546 799999999999994 67666666654
No 163
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.55 E-value=32 Score=34.53 Aligned_cols=33 Identities=27% Similarity=0.222 Sum_probs=25.2
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCCC
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAP 286 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A~ 286 (434)
+..+.||.+. +..+.. +.|+|+|+||..|+.++
T Consensus 232 ieAsGgIt~~-----------ni~~ya-~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 232 LEASGNITLE-----------NINAYA-KSGVDAISSGSLIHQAT 264 (273)
T ss_pred EEEECCCCHH-----------HHHHHH-HcCCCEEEeChhhcCCC
Confidence 3456677664 456777 89999999999998763
No 164
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=30.73 E-value=1.5e+02 Score=30.71 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=55.0
Q ss_pred ecCCCHHHHHHHHHHhCCceeEEeEceeee--ecCCHHHHHHHHHHHhcCCCeeeecC--CCCcchhHHHHHhhcCcccc
Q psy4093 348 LDVTQAKDLLTLTRQLGPHIAVLKTHSDAV--RDFSEEVQKELTALAKQHEFLRSRNG--WFSPILSSFSLRFRDDKTLA 423 (434)
Q Consensus 348 lD~~~~~~al~la~~lgp~i~~lKvg~dl~--~~~g~~~v~~L~~la~k~gf~iFlDl--Kf~DIpnTV~~a~~~~~~~~ 423 (434)
-|....++-.+|...+-|++- ++|+=.= +++....+++|++.|++.|+.|++=. +.-||+-++.... ||..+
T Consensus 140 sD~~~v~q~i~lik~~~Pnak--~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~--g~~d~ 215 (322)
T COG2984 140 SDLLPVAQQIELIKALLPNAK--SIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALL--GKVDV 215 (322)
T ss_pred CCcchHHHHHHHHHHhCCCCe--eEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhc--CCCcE
Confidence 377778888888999988874 3443211 22346799999999999999999865 4778888777665 77666
Q ss_pred cccC
Q psy4093 424 MSVP 427 (434)
Q Consensus 424 ~~~~ 427 (434)
+-.|
T Consensus 216 i~~p 219 (322)
T COG2984 216 IYIP 219 (322)
T ss_pred EEEe
Confidence 5544
No 165
>PRK13753 dihydropteroate synthase; Provisional
Probab=29.84 E-value=3.1e+02 Score=27.74 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=17.0
Q ss_pred ccCCHHHHHH------HcCCCEEEeCCcccC
Q psy4093 260 QYNGPTDVIT------LRGADLGVVGRGITQ 284 (434)
Q Consensus 260 Q~~TP~~Ai~------~~GAD~IVVGR~It~ 284 (434)
++.+++.|+. +.|||+|-||-.=|.
T Consensus 20 ~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTr 50 (279)
T PRK13753 20 RRLDPAGAVTAAIEMLRVGSDVVDVGPAASH 50 (279)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence 3455555541 679999999976663
No 166
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=29.60 E-value=2.1e+02 Score=30.93 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=74.8
Q ss_pred EeCCcccCCC-------CHHHHHHHHHHHHHHHHHHHH---hhcccccccChhhhhhhccchhhHHHHHHhhhcCCcEEE
Q psy4093 277 VVGRGITQAP-------DPVEAARRYKEVMWEAYEQRL---KKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCV 346 (434)
Q Consensus 277 VVGR~It~A~-------DP~~aa~~i~~~~~~a~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~Liv 346 (434)
|-||||+.+- +|.+-|+..++ .|..-..-+ +.+.+....+|++|...++-. +-+.-++.-.+-+.
T Consensus 142 v~~RPL~~tiiKP~iGlsp~~~A~~~~~-~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a----~~~a~~eTG~~~~y 216 (450)
T cd08212 142 KYGRPLLGCTIKPKLGLSAKNYGRVVYE-CLRGGLDFTKDDENINSQPFMRWRDRFLFVAEA----VNKAQAETGEVKGH 216 (450)
T ss_pred CCCCceEEEeccCccCCCHHHHHHHHHH-HHccCCcccccCccCCCCCCCCHHHHHHHHHHH----HHHHHHhhCCccee
Confidence 5699998763 35566555554 666544333 567788899999998854332 22332222223455
Q ss_pred EecCC-C-HHHHHH---HHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCc
Q psy4093 347 ALDVT-Q-AKDLLT---LTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSP 407 (434)
Q Consensus 347 AlD~~-~-~~~al~---la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~D 407 (434)
++.++ + .++.++ +|.+.|....+ ++++. |.+.++.|.+.++..+..|+-=+-+|-
T Consensus 217 ~~NiTa~~~~em~~ra~~a~~~G~~~~m----v~~~~--G~~~l~~l~~~a~~~~l~IhaHrA~~g 276 (450)
T cd08212 217 YLNVTAGTMEEMYKRAEFAKELGSPIIM----HDLLT--GFTAIQSLAKWCRDNGMLLHLHRAGHA 276 (450)
T ss_pred eccccCCCHHHHHHHHHHHHHhCCCeEe----eeccc--ccchHHHHHHHhhhcCceEEeccccce
Confidence 66666 4 555554 55556665533 55555 888888888766667888887666554
No 167
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=29.17 E-value=79 Score=29.13 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCC
Q psy4093 354 KDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGW 404 (434)
Q Consensus 354 ~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlK 404 (434)
|-+.+|++..+|--.-|++.-+.=..||..+++.|+ ++||-|.+|-|
T Consensus 39 D~v~qL~~~ypPA~Tt~~l~q~~~D~Fg~aL~~aLR----~~GYaV~e~~~ 85 (151)
T PRK13883 39 DAVQQLATLYPPAQTRFELQQPTPDAFGQALVKALR----DKGYALLEYNP 85 (151)
T ss_pred HHHHHHHHhCCCcceEEEEecCCCcHHHHHHHHHHH----HcCeEEEecCC
Confidence 457789999999999999988886789999999995 48999999776
No 168
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=29.11 E-value=71 Score=33.17 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=29.5
Q ss_pred CCHHHH--HHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093 262 NGPTDV--ITLRGADLGVVGRGITQAPDPVEAARRYK 296 (434)
Q Consensus 262 ~TP~~A--i~~~GAD~IVVGR~It~A~DP~~aa~~i~ 296 (434)
.||+++ +.++|+|-+-||.++..++||.++.+++.
T Consensus 298 ~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 298 FTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLF 334 (338)
T ss_pred CCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence 477776 33689999999999999999999888764
No 169
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.08 E-value=5.1e+02 Score=26.10 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=48.7
Q ss_pred cCCHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHhhcc-cccccChhhhhhhccchhhHHHHHHhhh
Q psy4093 261 YNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKEN-SRIVTPFETRKADVKCRISSTLLDIMVK 339 (434)
Q Consensus 261 ~~TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~l~~~m~~ 339 (434)
..-.+.|- +.|||.+.|--|.+...++.+. -+|.+.+.... .--..-|.-= ..+..++.-.++.-+.
T Consensus 93 i~~a~~A~-~~Gad~vlv~~P~y~~~~~~~l---------~~yf~~va~a~~~lPv~iYn~P-~~tg~~l~~~~l~~L~- 160 (309)
T cd00952 93 IARTRALL-DLGADGTMLGRPMWLPLDVDTA---------VQFYRDVAEAVPEMAIAIYANP-EAFKFDFPRAAWAELA- 160 (309)
T ss_pred HHHHHHHH-HhCCCEEEECCCcCCCCCHHHH---------HHHHHHHHHhCCCCcEEEEcCc-hhcCCCCCHHHHHHHh-
Confidence 33445666 8999999999999887665332 23444443222 1112223210 0112233332333333
Q ss_pred cCCcEEEEecCCCHHHHHHHHHHhCCceeEE
Q psy4093 340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVL 370 (434)
Q Consensus 340 k~s~LivAlD~~~~~~al~la~~lgp~i~~l 370 (434)
+-+|++--=|-.+.....++.+.+++.+.++
T Consensus 161 ~~pnivgiKdssd~~~~~~~i~~~~~~~~v~ 191 (309)
T cd00952 161 QIPQVVAAKYLGDIGALLSDLAAVKGRMRLL 191 (309)
T ss_pred cCCCEEEEEecCChHHHHHHHHHcCCCeEEe
Confidence 3345443335556666666666666655444
No 170
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=27.96 E-value=68 Score=31.93 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=30.7
Q ss_pred CCHHHHHH--HcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4093 262 NGPTDVIT--LRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLK 308 (434)
Q Consensus 262 ~TP~~Ai~--~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~ 308 (434)
.||++|.. ..|||.+-|||+++.. | ..++++++ +..+++++.+
T Consensus 244 ~s~~da~~~l~~GAd~V~igr~~l~~--p-~~~~~i~~-~l~~~~~~~g 288 (300)
T TIGR01037 244 TSFEDALEFLMAGASAVQVGTAVYYR--G-FAFKKIIE-GLIAFLKAEG 288 (300)
T ss_pred CCHHHHHHHHHcCCCceeecHHHhcC--c-hHHHHHHH-HHHHHHHHcC
Confidence 45665531 5899999999999974 5 67777776 5566666644
No 171
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.81 E-value=2.9e+02 Score=30.04 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=54.6
Q ss_pred cEEEEecCCCHHHHHHHHHHhCCceeEEeEceee--------eecCCH---HHHHHHHHHHhcCCCeeeecCCCCcchhH
Q psy4093 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDA--------VRDFSE---EVQKELTALAKQHEFLRSRNGWFSPILSS 411 (434)
Q Consensus 343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl--------~~~~g~---~~v~~L~~la~k~gf~iFlDlKf~DIpnT 411 (434)
-.++|=|+.+.++++.|.+. | +..+|||+-- .+..|. ..+.++.+.|++++.+|+-|...+. |.-
T Consensus 269 ~~v~agnv~t~~~a~~l~~a-G--ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~-~~~ 344 (479)
T PRK07807 269 VPIVAGNVVTAEGTRDLVEA-G--ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRH-PRD 344 (479)
T ss_pred CeEEeeccCCHHHHHHHHHc-C--CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCC-HHH
Confidence 35666699999999999983 3 5568866654 344453 3555555555578999999999887 556
Q ss_pred HHHHhhcCccccc
Q psy4093 412 FSLRFRDDKTLAM 424 (434)
Q Consensus 412 V~~a~~~~~~~~~ 424 (434)
+.+++..|-+-.|
T Consensus 345 ~~~al~~ga~~v~ 357 (479)
T PRK07807 345 VALALAAGASNVM 357 (479)
T ss_pred HHHHHHcCCCeee
Confidence 7777777755444
No 172
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.69 E-value=5.6e+02 Score=25.34 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=25.7
Q ss_pred HHHHHHcCCCEEEeCCccc-------CCCCHHHHHHHHHH
Q psy4093 265 TDVITLRGADLGVVGRGIT-------QAPDPVEAARRYKE 297 (434)
Q Consensus 265 ~~Ai~~~GAD~IVVGR~It-------~A~DP~~aa~~i~~ 297 (434)
..++.+.|.|.|=+|=|.. .++||.++.+.+++
T Consensus 27 a~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~ 66 (275)
T cd07937 27 AEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRK 66 (275)
T ss_pred HHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHH
Confidence 4455589999999998764 57889888887776
No 173
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=27.67 E-value=99 Score=32.20 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=24.5
Q ss_pred eEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCC
Q psy4093 242 LQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQA 285 (434)
Q Consensus 242 l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A 285 (434)
+++.-|||-. .+.-.|+ ..|||.+-|||++..+
T Consensus 279 vi~dGGIr~g----------~Di~kaL-alGA~~V~iGr~~l~~ 311 (351)
T cd04737 279 IIFDSGVRRG----------EHVFKAL-ASGADAVAVGRPVLYG 311 (351)
T ss_pred EEEECCCCCH----------HHHHHHH-HcCCCEEEECHHHHHH
Confidence 4556676632 3446788 8999999999999875
No 174
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=27.19 E-value=1.9e+02 Score=27.55 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=14.0
Q ss_pred cEEEEecCCCHHHHHHHHHH
Q psy4093 343 NLCVALDVTQAKDLLTLTRQ 362 (434)
Q Consensus 343 ~LivAlD~~~~~~al~la~~ 362 (434)
.+.+++|..+++-+.+-.+.
T Consensus 72 ~~plSIDT~~~~v~~~aL~~ 91 (210)
T PF00809_consen 72 DVPLSIDTFNPEVAEAALKA 91 (210)
T ss_dssp TSEEEEEESSHHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHc
Confidence 35677788877777776654
No 175
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=27.01 E-value=1.9e+02 Score=28.65 Aligned_cols=26 Identities=8% Similarity=-0.342 Sum_probs=20.6
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPV 289 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~ 289 (434)
-...|. +.|||.+++--|.+...++.
T Consensus 88 ~a~~a~-~~Gad~v~~~~P~y~~~~~~ 113 (288)
T cd00954 88 LAKHAE-ELGYDAISAITPFYYKFSFE 113 (288)
T ss_pred HHHHHH-HcCCCEEEEeCCCCCCCCHH
Confidence 345667 89999999999999876553
No 176
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=26.80 E-value=2.8e+02 Score=30.18 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=73.2
Q ss_pred EeCCcccCCC-------CHHHHHHHHHHHHHHHHHHHH---hhcccccccChhhhhhhccchhhHHHHHHhhhcCCcEEE
Q psy4093 277 VVGRGITQAP-------DPVEAARRYKEVMWEAYEQRL---KKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCV 346 (434)
Q Consensus 277 VVGR~It~A~-------DP~~aa~~i~~~~~~a~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~Liv 346 (434)
|-||||+.+- +|.+-|+..++ .|..-..-+ +.+.+....+|++|....+-.+- +.-++.-.+-+.
T Consensus 164 v~~RPLigtiiKP~~GLsp~~~A~~~y~-~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~----~a~~eTG~~~~y 238 (475)
T CHL00040 164 KYGRPLLGCTIKPKLGLSAKNYGRAVYE-CLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIY----KAQAETGEIKGH 238 (475)
T ss_pred CCCCceEEEecccccCCCHHHHHHHHHH-HHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHH----HHHHhhCCccee
Confidence 4689998762 46666666554 676554433 56888899999999886443222 221111122344
Q ss_pred EecCC--CHHHHHHHHH---HhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCC
Q psy4093 347 ALDVT--QAKDLLTLTR---QLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFS 406 (434)
Q Consensus 347 AlD~~--~~~~al~la~---~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~ 406 (434)
++.++ +.++.++-++ ..|....+ ++++ -.|.+.++.|.+.++..+..|+-=+-+|
T Consensus 239 ~~NiTa~~~~em~~ra~~a~e~G~~~~m----v~~~-~~G~~al~~l~~~~~~~~l~IhaHrA~~ 298 (475)
T CHL00040 239 YLNATAGTCEEMYKRAVFARELGVPIVM----HDYL-TGGFTANTSLAHYCRDNGLLLHIHRAMH 298 (475)
T ss_pred eeccCCCCHHHHHHHHHHHHHcCCceEE----Eecc-ccccchHHHHHHHhhhcCceEEeccccc
Confidence 56777 5777765444 45554433 3333 3577888888766666788888777666
No 177
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.77 E-value=2.2e+02 Score=27.41 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHHhCCc-eeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeeecCCCCcchhHHHHHhhc
Q psy4093 341 KSNLCVALDVTQAKDLLTLTRQLGPH-IAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSRNGWFSPILSSFSLRFRD 418 (434)
Q Consensus 341 ~s~LivAlD~~~~~~al~la~~lgp~-i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFlDlKf~DIpnTV~~a~~~ 418 (434)
+.+|+.-+-..+.++++.+++.+-.. +-++=++ +-+..+.+.+++|++ ++ +..|--|-++.| .++..++..
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit--l~~~~~~~~I~~l~~---~~p~~~IGAGTVl~~--~~a~~a~~a 86 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVT--LRTPAALEAIRLIAK---EVPEALIGAGTVLNP--EQLAQAIEA 86 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe--cCCccHHHHHHHHHH---HCCCCEEEEeeccCH--HHHHHHHHc
Confidence 56788888999999999999999886 8887777 334455667777653 44 477888999988 899999999
Q ss_pred Cccccccc
Q psy4093 419 DKTLAMSV 426 (434)
Q Consensus 419 ~~~~~~~~ 426 (434)
|-...+|.
T Consensus 87 GA~FivsP 94 (212)
T PRK05718 87 GAQFIVSP 94 (212)
T ss_pred CCCEEECC
Confidence 98776653
No 178
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=26.40 E-value=43 Score=34.45 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=25.2
Q ss_pred CHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHH
Q psy4093 263 GPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQR 306 (434)
Q Consensus 263 TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~ 306 (434)
|+++| + .+|||.+-|||++... +|. .+++|++ +.++|+++
T Consensus 300 s~eda~e~l-~aGAd~V~v~~~~~~~-gP~-~~~~i~~-~L~~~l~~ 342 (344)
T PRK05286 300 SAEDAYEKI-RAGASLVQIYSGLIYE-GPG-LVKEIVR-GLARLLRR 342 (344)
T ss_pred CHHHHHHHH-HcCCCHHHHHHHHHHh-Cch-HHHHHHH-HHHHHHHh
Confidence 55554 5 6899999999998643 343 3344554 55555554
No 179
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.35 E-value=99 Score=30.67 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=27.0
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHH
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~ 307 (434)
+..+++ ++|||.+-|||+++. ||.- .+++++ +..++.++.
T Consensus 245 da~~~l-~~GAd~V~igra~l~--~p~~-~~~i~~-~l~~~~~~~ 284 (296)
T cd04740 245 DALEFL-MAGASAVQVGTANFV--DPEA-FKEIIE-GLEAYLDEE 284 (296)
T ss_pred HHHHHH-HcCCCEEEEchhhhc--ChHH-HHHHHH-HHHHHHHHc
Confidence 335567 799999999999998 6643 455555 334555543
No 180
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=26.05 E-value=8.7e+02 Score=26.63 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=34.2
Q ss_pred cEEEEecCCCHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCC-eeeecCCCC
Q psy4093 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEF-LRSRNGWFS 406 (434)
Q Consensus 343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf-~iFlDlKf~ 406 (434)
.+|-.++-.+.+++..++...+-.++++ |.+- ....++..++.+.+.++|+ .|++|==+-
T Consensus 230 diINsVs~~~~d~~~~l~a~~g~~vVlm--~~~~--~~~~~~l~~~ie~a~~~Gi~~IIlDPglg 290 (499)
T TIGR00284 230 SGVIMPDVENAVELASEKKLPEDAFVVV--PGNQ--PTNYEELAKAVKKLRTSGYSKVAADPSLS 290 (499)
T ss_pred CEEEECCccchhHHHHHHHHcCCeEEEE--cCCC--CchHHHHHHHHHHHHHCCCCcEEEeCCCC
Confidence 3666555555666767677665555443 3321 1112555555666677787 777776553
No 181
>KOG0618|consensus
Probab=26.03 E-value=62 Score=37.98 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=37.6
Q ss_pred CceEEeCccchhhcCCCceEecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeC--------------CcccCCCCHH
Q psy4093 224 IAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVG--------------RGITQAPDPV 289 (434)
Q Consensus 224 v~GvVcs~~e~~~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVG--------------R~It~A~DP~ 289 (434)
++||+|+.+.. |+. .+-|+|-|. ....-++-|+.+- ++||| +.+....||.
T Consensus 681 ~ngvt~~tR~i---G~~--~l~P~v~p~---Phv~~~~Lt~qdE-------~LIvgn~~lW~~Lsid~a~~~vRn~~dpL 745 (1081)
T KOG0618|consen 681 LNGVTSSTRAI---GPF--SLFPHVLPD---PHVSVVILTEQDE-------FLIVGNKQLWSVLSIDTAVDAVRNVEDPL 745 (1081)
T ss_pred eeceeeeeeec---ccc--cccccccCC---CceeeEecccCce-------EEEEcchHHhhhccHHHHHHHHhcCCchH
Confidence 88999999875 544 344777763 1111122233221 45665 4566888999
Q ss_pred HHHHHHHHH
Q psy4093 290 EAARRYKEV 298 (434)
Q Consensus 290 ~aa~~i~~~ 298 (434)
.||+++++-
T Consensus 746 ~AAkKL~d~ 754 (1081)
T KOG0618|consen 746 LAAKKLCDL 754 (1081)
T ss_pred HHHHHHHHH
Confidence 999999983
No 182
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=25.81 E-value=41 Score=29.37 Aligned_cols=14 Identities=50% Similarity=1.272 Sum_probs=12.5
Q ss_pred cccCCCCeecEEEc
Q psy4093 38 IDRWPGGLIPYYID 51 (434)
Q Consensus 38 ~~rWPn~~VpY~I~ 51 (434)
..|||+++|+|.|+
T Consensus 2 ~~~W~~~~v~Y~i~ 15 (140)
T smart00235 2 SKKWPKGTVPYVID 15 (140)
T ss_pred CCcCCCCcEEEEEc
Confidence 36899999999996
No 183
>PRK02227 hypothetical protein; Provisional
Probab=25.78 E-value=4.9e+02 Score=25.81 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHhCCceeEE----eEceeeeecCCHHHHHHHHHHHhcCCCeeee--cCCCCcchhH
Q psy4093 352 QAKDLLTLTRQLGPHIAVL----KTHSDAVRDFSEEVQKELTALAKQHEFLRSR--NGWFSPILSS 411 (434)
Q Consensus 352 ~~~~al~la~~lgp~i~~l----Kvg~dl~~~~g~~~v~~L~~la~k~gf~iFl--DlKf~DIpnT 411 (434)
++.++..++.+.|=...|+ |-|--||.-.+.+-..++.+.+++||.+.=| =|++-|||.-
T Consensus 132 ~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAGSL~~~dip~L 197 (238)
T PRK02227 132 SPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSALAGSLKFEDIPAL 197 (238)
T ss_pred ChHHHHHHHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHhHhcccCchhhHHHH
Confidence 7778889999888888876 6677888878888777778888888876544 4677777754
No 184
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=25.64 E-value=5.5e+02 Score=27.45 Aligned_cols=77 Identities=13% Similarity=0.033 Sum_probs=55.3
Q ss_pred EEEEecCCCHHHHHHHHHHhCCceeEEeEce--------eeeecCCH---HHHHHHHHHHhcCCCeeeecCCCCcchhHH
Q psy4093 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHS--------DAVRDFSE---EVQKELTALAKQHEFLRSRNGWFSPILSSF 412 (434)
Q Consensus 344 LivAlD~~~~~~al~la~~lgp~i~~lKvg~--------dl~~~~g~---~~v~~L~~la~k~gf~iFlDlKf~DIpnTV 412 (434)
.++|-++.+.+++..+++. -+-++|||+ ..+..+|. ..+.++.+.+++++.+|+-|.-... |--+
T Consensus 267 ~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~-~~di 342 (450)
T TIGR01302 267 DIIAGNVATAEQAKALIDA---GADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRY-SGDI 342 (450)
T ss_pred CEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCC-HHHH
Confidence 3455699999999999984 334567664 34555663 4556666667778999999998776 6667
Q ss_pred HHHhhcCccccc
Q psy4093 413 SLRFRDDKTLAM 424 (434)
Q Consensus 413 ~~a~~~~~~~~~ 424 (434)
.+|++.|-+-.|
T Consensus 343 ~kAla~GA~~V~ 354 (450)
T TIGR01302 343 VKALAAGADAVM 354 (450)
T ss_pred HHHHHcCCCEEE
Confidence 788888866554
No 185
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=25.46 E-value=41 Score=30.15 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=12.5
Q ss_pred cCCCCeecEEEcCC
Q psy4093 40 RWPGGLIPYYIDDD 53 (434)
Q Consensus 40 rWPn~~VpY~I~~~ 53 (434)
|||+++|+|.|++.
T Consensus 1 kW~~~~itY~i~~~ 14 (157)
T cd04278 1 KWSKTNLTYRILNY 14 (157)
T ss_pred CCCCCceeEEEECC
Confidence 79999999999765
No 186
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=25.39 E-value=1.6e+02 Score=31.34 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhCCc-eeEEeEceeeeecCC----HHHHHHHHHHHhcCCCeeeecC
Q psy4093 352 QAKDLLTLTRQLGPH-IAVLKTHSDAVRDFS----EEVQKELTALAKQHEFLRSRNG 403 (434)
Q Consensus 352 ~~~~al~la~~lgp~-i~~lKvg~dl~~~~g----~~~v~~L~~la~k~gf~iFlDl 403 (434)
|.+.+.++++.+|+. |.++=+-+--=+..| .+-+++..+||+|++.+++.|-
T Consensus 170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da 226 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDA 226 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeeh
Confidence 567888888888877 554444333334445 4567788889999999999884
No 187
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=25.00 E-value=4.8e+02 Score=27.85 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=19.7
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCC
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPD 287 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~D 287 (434)
....|+ .+|||.+.||+.++..+.
T Consensus 341 di~kAl-a~GA~~V~~G~~~a~~~e 364 (450)
T TIGR01302 341 DIVKAL-AAGADAVMLGSLLAGTTE 364 (450)
T ss_pred HHHHHH-HcCCCEEEECchhhcCCc
Confidence 346678 899999999999998654
No 188
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=24.98 E-value=1.4e+02 Score=29.92 Aligned_cols=30 Identities=37% Similarity=0.463 Sum_probs=25.7
Q ss_pred HHHHHcCCCEEEeCCcccCCCCHHHHHHHHH
Q psy4093 266 DVITLRGADLGVVGRGITQAPDPVEAARRYK 296 (434)
Q Consensus 266 ~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i~ 296 (434)
... +.|+|-+-||-++-+++||.++.+++.
T Consensus 224 ~l~-~~ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 224 RLA-KAGADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred HHH-HcCCCEEEecHHHhcCCCHHHHHHHhh
Confidence 334 789999999999999999999888763
No 189
>PRK06242 flavodoxin; Provisional
Probab=24.75 E-value=2e+02 Score=25.01 Aligned_cols=18 Identities=28% Similarity=0.087 Sum_probs=14.5
Q ss_pred cCCCEEEeCCcccCCCCH
Q psy4093 271 RGADLGVVGRGITQAPDP 288 (434)
Q Consensus 271 ~GAD~IVVGR~It~A~DP 288 (434)
..+|.||+|=|++...=|
T Consensus 42 ~~~d~ii~g~pvy~~~~~ 59 (150)
T PRK06242 42 SEYDLIGFGSGIYFGKFH 59 (150)
T ss_pred hHCCEEEEeCchhcCCcC
Confidence 688999999999875433
No 190
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=24.34 E-value=1.3e+02 Score=28.35 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHHHHHc-CCCEEEeCCcccCCCC
Q psy4093 264 PTDVITLR-GADLGVVGRGITQAPD 287 (434)
Q Consensus 264 P~~Ai~~~-GAD~IVVGR~It~A~D 287 (434)
..+++ +. |+|.+.+||+++..++
T Consensus 198 ~~~~l-~~~gad~V~igr~~l~~P~ 221 (231)
T cd02801 198 ALRCL-EQTGVDGVMIGRGALGNPW 221 (231)
T ss_pred HHHHH-HhcCCCEEEEcHHhHhCCH
Confidence 34445 54 8999999999998654
No 191
>KOG1367|consensus
Probab=23.95 E-value=1.1e+02 Score=31.77 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=30.6
Q ss_pred EEeEceeeeecCCHHHHHHHHHHHhcCCCeeeec
Q psy4093 369 VLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRN 402 (434)
Q Consensus 369 ~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlD 402 (434)
-.+||.-||...|.+.+.+|.+.|+++|..|++=
T Consensus 248 ~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i~lP 281 (416)
T KOG1367|consen 248 GMEIGKSLFDEEGAEIVKDLMEKAKAKGVRILLP 281 (416)
T ss_pred CcchhhhhhhhhhHHHHHHHHHHHHHcCcEEEee
Confidence 3678999999999999999999999999999873
No 192
>KOG2978|consensus
Probab=23.88 E-value=1.5e+02 Score=28.74 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=55.4
Q ss_pred ccccccChhhhhhhccchhhHHHHHH-hh--hcCCcEEEEecCCCHHHHHHHHHH----hCCceeEEeEceeeeecCCHH
Q psy4093 311 NSRIVTPFETRKADVKCRISSTLLDI-MV--KKKSNLCVALDVTQAKDLLTLTRQ----LGPHIAVLKTHSDAVRDFSEE 383 (434)
Q Consensus 311 ~~~~~~~~~~r~~~~~~~~~~~l~~~-m~--~k~s~LivAlD~~~~~~al~la~~----lgp~i~~lKvg~dl~~~~g~~ 383 (434)
-|-+...|-||..+ |+..+|+.= |. .++..||+ +|=.++|-..+.|+. -|..-..+|...-=. --|.+
T Consensus 5 YsvilPtYnEk~Nl---pi~~~li~~~~~e~~~~~eiIi-vDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~kl-GLgtA 79 (238)
T KOG2978|consen 5 YSVILPTYNEKENL---PIITRLIAKYMSEEGKKYEIII-VDDASPDGTQEVAKALQKIYGEDNILLKPRTKKL-GLGTA 79 (238)
T ss_pred eeEEeccccCCCCC---eeeHHHHHhhhhhhcCceEEEE-EeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcc-cchHH
Confidence 35677889998654 577777665 44 24566666 666666655555555 444333333221100 12445
Q ss_pred HHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhc
Q psy4093 384 VQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRD 418 (434)
Q Consensus 384 ~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~ 418 (434)
.+..|.. .++.|.|.-|--|.-=|.++-.-++.
T Consensus 80 y~hgl~~--a~g~fiviMDaDlsHhPk~ipe~i~l 112 (238)
T KOG2978|consen 80 YIHGLKH--ATGDFIVIMDADLSHHPKFIPEFIRL 112 (238)
T ss_pred HHhhhhh--ccCCeEEEEeCccCCCchhHHHHHHH
Confidence 5555543 23567777776665555555554443
No 193
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=23.49 E-value=39 Score=35.42 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=13.6
Q ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHHHhCCceeEE-eEceeeeecC---CHHHHHHHHHHHhcCCCeeeecCC
Q psy4093 332 TLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVL-KTHSDAVRDF---SEEVQKELTALAKQHEFLRSRNGW 404 (434)
Q Consensus 332 ~l~~~m~~k~s~LivAlD~~~~~~al~la~~lgp~i~~l-Kvg~dl~~~~---g~~~v~~L~~la~k~gf~iFlDlK 404 (434)
|+.++|...-.+| |=+-.++...+..+.+.+.+.-+++ |+|---|.-. +.--.++|.+||++||.+++.|+=
T Consensus 103 Rip~vm~~sGa~l-vEVGttN~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~Dlg 178 (367)
T PF03841_consen 103 RIPDVMRQSGARL-VEVGTTNRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLG 178 (367)
T ss_dssp -----------------------------------------------------------HHHHHHHHHT--EEEE-T
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECC
Confidence 3446666554443 3455666666777788888777664 9994433222 233567889999999999999974
No 194
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=22.55 E-value=4.7e+02 Score=23.13 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=33.9
Q ss_pred hcCCcEEEEe---cCCC--------HHHHHHHHHHhC-CceeEEeEceeeeecCC----------HHHHHHHHHHHhcCC
Q psy4093 339 KKKSNLCVAL---DVTQ--------AKDLLTLTRQLG-PHIAVLKTHSDAVRDFS----------EEVQKELTALAKQHE 396 (434)
Q Consensus 339 ~k~s~LivAl---D~~~--------~~~al~la~~lg-p~i~~lKvg~dl~~~~g----------~~~v~~L~~la~k~g 396 (434)
.+.+-+++++ |... .+.+..+++++. +...++=++.--..... .++.+.|+++|+++|
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~ 145 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYG 145 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344455554 5544 566777888773 33333334321110111 235567888888887
Q ss_pred CeeeecC
Q psy4093 397 FLRSRNG 403 (434)
Q Consensus 397 f~iFlDl 403 (434)
.. |.|+
T Consensus 146 v~-~vd~ 151 (185)
T cd01832 146 AV-HVDL 151 (185)
T ss_pred CE-EEec
Confidence 44 5554
No 195
>KOG3843|consensus
Probab=22.50 E-value=1.2e+02 Score=30.86 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhCCceeEEeEceee--eecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhh
Q psy4093 351 TQAKDLLTLTRQLGPHIAVLKTHSDA--VRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFR 417 (434)
Q Consensus 351 ~~~~~al~la~~lgp~i~~lKvg~dl--~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~ 417 (434)
+|.+...+.++++|+. |++=+|.-. |.--.|+-++.+..+.. -||||..|..||-
T Consensus 141 tdleav~~~iee~g~d-cilci~sttscfapr~pd~leaiaaica-----------~~diphivnnayg 197 (432)
T KOG3843|consen 141 TDLEAVEAIIEELGED-CILCIHSTTSCFAPRSPDNLEAIAAICA-----------AHDIPHIVNNAYG 197 (432)
T ss_pred HhHHHHHHHHHHhCCc-eEEEEeecccccCCCCCchHHHHHHHHH-----------ccCchhhhccccc
Confidence 4667788889999987 344445432 44445788888877664 5899999998873
No 196
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=22.45 E-value=1.5e+02 Score=29.01 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHHHHHcC-CCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 265 TDVITLRG-ADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 265 ~~Ai~~~G-AD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
.+++ +.| +|.+++|+.++.-.-+.+.++++.+
T Consensus 215 ~~~~-~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 215 YEAF-TKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHH-HcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 4556 667 9999999999988877776666654
No 197
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=22.13 E-value=99 Score=30.84 Aligned_cols=42 Identities=31% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCHHHH---HHHcCCCEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy4093 262 NGPTDV---ITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLK 308 (434)
Q Consensus 262 ~TP~~A---i~~~GAD~IVVGR~It~A~DP~~aa~~i~~~~~~a~~~~~~ 308 (434)
.||++| + .+|||.+-|||++.. ||. .++++++ +.+.|+.+.+
T Consensus 244 ~~~~da~~~l-~aGAd~V~igr~ll~--~P~-~~~~i~~-~l~~~~~~~g 288 (301)
T PRK07259 244 SSAEDAIEFI-MAGASAVQVGTANFY--DPY-AFPKIIE-GLEAYLDKYG 288 (301)
T ss_pred CCHHHHHHHH-HcCCCceeEcHHHhc--CcH-HHHHHHH-HHHHHHHHcC
Confidence 355555 5 689999999999998 664 4555665 4456665543
No 198
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=21.71 E-value=7.6e+02 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.1
Q ss_pred CHHHHHHHcCCCEEEeCCcccCCCC
Q psy4093 263 GPTDVITLRGADLGVVGRGITQAPD 287 (434)
Q Consensus 263 TP~~Ai~~~GAD~IVVGR~It~A~D 287 (434)
....|+ ..|||.+.+||.+..++.
T Consensus 211 di~kAl-a~GA~~VmiGt~fa~t~E 234 (325)
T cd00381 211 DIVKAL-AAGADAVMLGSLLAGTDE 234 (325)
T ss_pred HHHHHH-HcCCCEEEecchhccccc
Confidence 456788 899999999999998653
No 199
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=21.70 E-value=4.6e+02 Score=26.63 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.9
Q ss_pred HHHHHHcC-CCEEEeCCcccCCCCHH
Q psy4093 265 TDVITLRG-ADLGVVGRGITQAPDPV 289 (434)
Q Consensus 265 ~~Ai~~~G-AD~IVVGR~It~A~DP~ 289 (434)
.+++ +.| +|+|-+||+....+|-.
T Consensus 306 ~~~l-~~g~aD~V~~gR~~i~dP~~~ 330 (336)
T cd02932 306 EAIL-ESGRADLVALGRELLRNPYWP 330 (336)
T ss_pred HHHH-HcCCCCeehhhHHHHhCccHH
Confidence 4557 666 99999999999977743
No 200
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.02 E-value=1.6e+02 Score=29.23 Aligned_cols=40 Identities=5% Similarity=-0.289 Sum_probs=25.2
Q ss_pred ecCcccccCCCCCCCCccCCHHHHHHHcCCCEEEeCCcccCC-CCH
Q psy4093 244 LTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQA-PDP 288 (434)
Q Consensus 244 vtPGIr~~~~~~~~~dQ~~TP~~Ai~~~GAD~IVVGR~It~A-~DP 288 (434)
|..||... +..+...-.+.|. +.|||.+.|--|.+.. .++
T Consensus 68 vi~gvg~~----~~~~ai~~a~~a~-~~Gad~v~v~~P~y~~~~~~ 108 (279)
T cd00953 68 VIFQVGSL----NLEESIELARAAK-SFGIYAIASLPPYYFPGIPE 108 (279)
T ss_pred EEEEeCcC----CHHHHHHHHHHHH-HcCCCEEEEeCCcCCCCCCH
Confidence 45666632 1222233445556 7999999999999865 354
No 201
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=20.94 E-value=1.2e+02 Score=31.92 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=19.4
Q ss_pred CCHHHHHHHcCCCEEEeCCcccCC
Q psy4093 262 NGPTDVITLRGADLGVVGRGITQA 285 (434)
Q Consensus 262 ~TP~~Ai~~~GAD~IVVGR~It~A 285 (434)
.+.-.|+ ..|||.+-+||+...+
T Consensus 313 ~Di~KAL-aLGA~~V~iGr~~l~~ 335 (381)
T PRK11197 313 LDVVRMI-ALGADTVLLGRAFVYA 335 (381)
T ss_pred HHHHHHH-HcCcCceeEhHHHHHH
Confidence 3456788 8999999999999875
No 202
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=20.92 E-value=2.2e+02 Score=26.13 Aligned_cols=74 Identities=9% Similarity=-0.007 Sum_probs=35.7
Q ss_pred cEEEEecCCCHHHHHHHHHHhCCceeEEeEce-ee--eecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhcC
Q psy4093 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHS-DA--VRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDD 419 (434)
Q Consensus 343 ~LivAlD~~~~~~al~la~~lgp~i~~lKvg~-dl--~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~~ 419 (434)
..++|+|+.+..+.++.+.+.|-..-.|-+.= .+ ...++++.+++|++. .+..+-.+++..|...-+..+.+.|
T Consensus 4 ~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~---~~~~~~v~l~~~d~~~~~~~~~~~g 80 (211)
T cd00429 4 PSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKH---TDLPLDVHLMVENPERYIEAFAKAG 80 (211)
T ss_pred eeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhh---CCCcEEEEeeeCCHHHHHHHHHHcC
Confidence 35667777776666666666654332221100 00 012455666666532 1233334566666555555555443
No 203
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=20.89 E-value=2.1e+02 Score=28.64 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCeeeecCCCCc
Q psy4093 384 VQKELTALAKQHEFLRSRNGWFSP 407 (434)
Q Consensus 384 ~v~~L~~la~k~gf~iFlDlKf~D 407 (434)
-+++|.+++++||..|+.|--..+
T Consensus 186 ~l~~i~~ia~~~~~~li~De~~~~ 209 (385)
T PRK05958 186 PLAELVALARRHGAWLLVDEAHGT 209 (385)
T ss_pred CHHHHHHHHHHhCCEEEEECcccc
Confidence 467778888888888888876543
No 204
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.87 E-value=87 Score=30.01 Aligned_cols=133 Identities=22% Similarity=0.282 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhccccceEEEcccCC--chhHHHHHHHhhhhCCCCceEEEEEeCCCCCCCh-HHHHhhcchhhHHHHHh
Q psy4093 119 IGAAVGHQFRLIGEWAHLVTVHSIAG--PGPLQEIQRISDELGEDRGVFLIAQLSCQGNLID-EKYTQVGFKAITLELKK 195 (434)
Q Consensus 119 I~nTv~~~~~~~~~~~d~vTvH~~~G--~~ml~~a~~~~~~~~~~~~v~~v~~lss~~sl~~-~~~~~~g~~~~~~~~~~ 195 (434)
|--|.+...+.+..++|++-+-+..= ++.+..+++..++. .+++++..++ +.+ ..-.++||..+--+|
T Consensus 50 ITPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~----~~l~MADist---~ee~~~A~~~G~D~I~TTL-- 120 (192)
T PF04131_consen 50 ITPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEK----YQLVMADIST---LEEAINAAELGFDIIGTTL-- 120 (192)
T ss_dssp BS-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHC----TSEEEEE-SS---HHHHHHHHHTT-SEEE-TT--
T ss_pred ECCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHh----CcEEeeecCC---HHHHHHHHHcCCCEEEccc--
Confidence 34566665555556899999988654 35566666666543 2677777665 111 111123333221111
Q ss_pred hhccCCCCCCCCchHHHHHHHHhhcCCCCceEEeCccchhhcCCCceEecCcccccCCCCCCCCccCCHH---HHHHHcC
Q psy4093 196 YLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPT---DVITLRG 272 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~e~v~~lA~~a~~gv~GvVcs~~e~~~~~~~~l~vtPGIr~~~~~~~~~dQ~~TP~---~Ai~~~G 272 (434)
.|-+..... -..+++++.++++. ++ -|||-+ .+.||+ +|+ +.|
T Consensus 121 sGYT~~t~~-~~pD~~lv~~l~~~---~~-pvIaEG----------------------------ri~tpe~a~~al-~~G 166 (192)
T PF04131_consen 121 SGYTPYTKG-DGPDFELVRELVQA---DV-PVIAEG----------------------------RIHTPEQAAKAL-ELG 166 (192)
T ss_dssp TTSSTTSTT-SSHHHHHHHHHHHT---TS-EEEEES----------------------------S--SHHHHHHHH-HTT
T ss_pred ccCCCCCCC-CCCCHHHHHHHHhC---CC-cEeecC----------------------------CCCCHHHHHHHH-hcC
Confidence 011111111 12223344444331 01 122211 134554 457 899
Q ss_pred CCEEEeCCcccCCCCHHHHHHHHHH
Q psy4093 273 ADLGVVGRGITQAPDPVEAARRYKE 297 (434)
Q Consensus 273 AD~IVVGR~It~A~DP~~aa~~i~~ 297 (434)
|+-+|||-.|| .|....+++.+
T Consensus 167 A~aVVVGsAIT---rP~~It~~F~~ 188 (192)
T PF04131_consen 167 AHAVVVGSAIT---RPQEITKRFVD 188 (192)
T ss_dssp -SEEEE-HHHH----HHHHHHHHHH
T ss_pred CeEEEECcccC---CHHHHHHHHHH
Confidence 99999999999 58888888876
No 205
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.73 E-value=79 Score=30.25 Aligned_cols=30 Identities=23% Similarity=0.135 Sum_probs=24.2
Q ss_pred HHHHHHcCCCEEEeCCcccCCCCHHHHHHHH
Q psy4093 265 TDVITLRGADLGVVGRGITQAPDPVEAARRY 295 (434)
Q Consensus 265 ~~Ai~~~GAD~IVVGR~It~A~DP~~aa~~i 295 (434)
.++. ..|++.++||+.++....+.+.+..+
T Consensus 209 ~~~~-~~Ga~gv~vgsa~~~~~~~~~~~~~~ 238 (241)
T PRK13585 209 RALK-EAGAAGVVVGSALYKGKFTLEEAIEA 238 (241)
T ss_pred HHHH-HcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence 4446 89999999999999988877665554
No 206
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=20.17 E-value=3.2e+02 Score=29.17 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=71.6
Q ss_pred EeCCcccCC-------CCHHHHHHHHHHHHHHHHHHHH---hhcccccccChhhhhhhccchhhHHHHHHhhhcCCcEEE
Q psy4093 277 VVGRGITQA-------PDPVEAARRYKEVMWEAYEQRL---KKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCV 346 (434)
Q Consensus 277 VVGR~It~A-------~DP~~aa~~i~~~~~~a~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~Liv 346 (434)
|-|||++.+ -+|.+-++..++ .|..-..-+ +.+.+....+|++|....+..+- +.-++.-.+...
T Consensus 128 v~~RPL~gtiiKP~~Glsp~~~a~~~y~-~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~----~a~~eTG~~~~y 202 (412)
T cd08213 128 IKDRPLLGTVPKPKVGLSPEEHAEVAYE-ALVGGVDLVKDDENLTSQPFNRFEERAKESLKARD----KAEAETGERKAY 202 (412)
T ss_pred CCCCCeEEeecCcccCCCHHHHHHHHHH-HHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHH----HHHHhhCCcceE
Confidence 448998865 246666666554 666554444 56788889999999886543322 222221122334
Q ss_pred EecCCC-HHHH---HHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCc
Q psy4093 347 ALDVTQ-AKDL---LTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSP 407 (434)
Q Consensus 347 AlD~~~-~~~a---l~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~D 407 (434)
++.++. .++. .++|.+.|..+.| ++++ ..|...++.|.+.+...+..|+-=+-+|.
T Consensus 203 ~~NiT~~~~em~~ra~~a~e~G~~~~m----v~~~-~~G~~~l~~l~~~~~~~~l~ihaHra~~g 262 (412)
T cd08213 203 LANITAPVREMERRAELVADLGGKYVM----IDVV-VAGWSALQYLRDLAEDYGLAIHAHRAMHA 262 (412)
T ss_pred EEEecCCHHHHHHHHHHHHHhCCCeEE----eecc-ccChHHHHHHHHhccccCeEEEECCCcce
Confidence 454443 2444 4566667766644 3333 35788888887654455788887766654
No 207
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=20.14 E-value=82 Score=32.30 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred CCcccC-------CCCHHHHHHHHHHHHHHH---HHHHHhhcccccccChhhhhhhccchhhHHHHHHhhhcCCcEEEEe
Q psy4093 279 GRGITQ-------APDPVEAARRYKEVMWEA---YEQRLKKENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVAL 348 (434)
Q Consensus 279 GR~It~-------A~DP~~aa~~i~~~~~~a---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~~k~s~LivAl 348 (434)
+||++. .-.|.+-++..++ .|.. +.|.=+.+.+....+|++|...++..+- +--++.-.+-+.++
T Consensus 13 ~RPL~~tiiKP~~Glsp~~~a~~~y~-~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~----~a~~eTG~~~ly~~ 87 (309)
T PF00016_consen 13 DRPLLGTIIKPKLGLSPEELAELAYE-FALGGVDFIKDDENLANQPFCPFEERVPACMEAVD----RAEEETGEKKLYAA 87 (309)
T ss_dssp SS-EEEEEESSSSTS-HHHHHHHHHH-HHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHH----HHHHHHSS--EEEE
T ss_pred cceEEccccCcceeecccchhhHHHh-hhhcccceecccccccCcccccHhHhHHhhhhhhh----ccccccceecceec
Q ss_pred cCC--CHHHHHHHHHHhCCceeEEeEceeeeecCCHHHHHHHHHHHhcCCCeeeecCCCCcchhHHHHHhhcCcccccc
Q psy4093 349 DVT--QAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFSLRFRDDKTLAMS 425 (434)
Q Consensus 349 D~~--~~~~al~la~~lgp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~gf~iFlDlKf~DIpnTV~~a~~~~~~~~~~ 425 (434)
.++ +.++.++-++.+-. .+.-=+-++++.. |...+..|.+.++..+..|+--+ ....++...+..+||
T Consensus 88 NiT~~~~~em~~ra~~a~~-~G~~~vmv~~~~~-G~~~~~~l~~~~~~~~~~ih~H~-------A~~ga~~r~~~~Gis 157 (309)
T PF00016_consen 88 NITADTPDEMIERAEYAKE-AGANAVMVNVLTA-GFSALQSLAEDARDNGLPIHAHR-------AGHGAFTRSPDHGIS 157 (309)
T ss_dssp EE-SSSHHHHHHHHHHHHH-HTGSEEEEEHHHH-CHHHHHHHHHHHHHHTSEEEEET-------TTHHHHHSSSSSEEH
T ss_pred ccccccHHHHHHhhhhhhh-hccchhhcccccc-cccccchhhhhhcccceeeeecc-------ccchhhcccccCccc
No 208
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=20.13 E-value=6.9e+02 Score=24.44 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=56.1
Q ss_pred HHHHHHcCCCEEEeCCcccCCCC---HHHHHHHHHHHHHHHHHHHH---hhcccccccChhhhhhhccchhhHHHHHHhh
Q psy4093 265 TDVITLRGADLGVVGRGITQAPD---PVEAARRYKEVMWEAYEQRL---KKENSRIVTPFETRKADVKCRISSTLLDIMV 338 (434)
Q Consensus 265 ~~Ai~~~GAD~IVVGR~It~A~D---P~~aa~~i~~~~~~a~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~l~~~m~ 338 (434)
...+ ++|+|+|.+.-|...... +.+..+++ .|..+++-+ +..+..+ -++.+--...+++.|.
T Consensus 151 ~~~~-eaG~d~i~i~dp~~~~~~~~is~~~~~e~---~~p~~k~i~~~i~~~~~~~--------~lH~cg~~~~~~~~l~ 218 (306)
T cd00465 151 KTLI-EAGAKALQIHEPAFSQINSFLGPKMFKKF---ALPAYKKVAEYKAAGEVPI--------VHHSCYDAADLLEEMI 218 (306)
T ss_pred HHHH-HhCCCEEEEecccccccCCCCCHHHHHHH---HHHHHHHHHHHHhhcCCce--------EEEECCCHHHHHHHHH
Confidence 3445 899999999998777653 22233333 333332222 2222111 1222222234455554
Q ss_pred hcCCcEEEEecCCCHHHHHHHHHHhCCceeEEeEceee-eecCCHH-HHHHHHHHHh
Q psy4093 339 KKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDA-VRDFSEE-VQKELTALAK 393 (434)
Q Consensus 339 ~k~s~LivAlD~~~~~~al~la~~lgp~i~~lKvg~dl-~~~~g~~-~v~~L~~la~ 393 (434)
+... =++++|... .+...+.+.+++.+| +=-|++- +....++ +.++++++-+
T Consensus 219 ~~~~-d~~~~d~~~-~d~~~~~~~~~~~~~-i~Ggv~~~~~~~~~e~i~~~v~~~l~ 272 (306)
T cd00465 219 QLGV-DVISFDMTV-NEPKEAIEKVGEKKT-LVGGVDPGYLPATDEECIAKVEELVE 272 (306)
T ss_pred HhCc-ceEeccccc-CCHHHHHHHhCCCEE-EECCCCccccCCCHHHHHHHHHHHHH
Confidence 4332 255677764 355566677887654 4445443 2233343 5555555444
No 209
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=20.09 E-value=4.1e+02 Score=29.73 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=46.7
Q ss_pred hHHHHHHhhhcC---CcEEEEecCCCHHHHHHHHHHh---CCceeEEeEceeeeecCCHHHHHHHHHHHhcC-CCeeee
Q psy4093 330 SSTLLDIMVKKK---SNLCVALDVTQAKDLLTLTRQL---GPHIAVLKTHSDAVRDFSEEVQKELTALAKQH-EFLRSR 401 (434)
Q Consensus 330 ~~~l~~~m~~k~---s~LivAlD~~~~~~al~la~~l---gp~i~~lKvg~dl~~~~g~~~v~~L~~la~k~-gf~iFl 401 (434)
.|||.+=|.++- .-+.+++-+|+.++|-+|++.| |=.-..||-| .-+.|+....+|+.+ .|+|.+
T Consensus 110 ~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPG-------tIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 110 GKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPG-------TIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred hHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCC-------cHHHHHHHHHHHhcCCCCceEE
Confidence 345555555543 3488999999999999999999 4333345655 467888888899877 588765
Done!