RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4093
(434 letters)
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 144 bits (363), Expect = 9e-40
Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 89 FSKNGDDTIVPHFVMAQNVLWSIII-LKLADIGAAVGHQFR----LIGEWAHLVTVHSIA 143
+ D + +A+ + I K ADIG V Q+ I WA LV H +
Sbjct: 119 LNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVP 178
Query: 144 GPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVL 203
G G ++ +Q + L RG LIA++S G+L YT+
Sbjct: 179 GSGVVKGLQEVGLPLH--RGCLLIAEMSSTGSLATGDYTR-------------------- 216
Query: 204 PKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNG 263
+++A+ + G + + ++ P L LTPG+ L GDN GQQYN
Sbjct: 217 --------AAVRMAEEHSEFVVGFISGSR--VSMKPEFLHLTPGVQLEAGGDNLGQQYNS 266
Query: 264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
P +VI RG+D+ +VGRGI A D +EAA Y++ WEAY RL
Sbjct: 267 PQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRL 310
Score = 88.2 bits (218), Expect = 1e-19
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 304 EQRLKKENSRIVTPFETRKADVKC-RISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQ 362
L + + F R + ++S LL +M KK++NLC++ DV+ A++LL L
Sbjct: 45 GSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQLADA 104
Query: 363 LGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
LGP I +LKTH D + DF+ +V KEL LAK HEFL
Sbjct: 105 LGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFL 140
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel,
unusual catalysis, disease mutati glycosyltransferase,
lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo
sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A*
3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A*
3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A*
3l0n_A* ...
Length = 260
Score = 142 bits (358), Expect = 1e-39
Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 89 FSKNGDDTIVPHFVMAQNVLWSIII-LKLADIGAAVGHQFR----LIGEWAHLVTVHSIA 143
+ D + +A+ + I K ADIG V Q+ I WA LV H +
Sbjct: 67 LNDFTLDVMKELITLAKCHEFLIFENRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVP 126
Query: 144 GPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVL 203
G G ++ +Q + L RG LIA++S G+L YT+
Sbjct: 127 GSGVVKGLQEVGLPLH--RGCLLIAEMSSTGSLATGDYTRAA------------------ 166
Query: 204 PKCDNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNG 263
+++A+ + G + + ++ P L LTPG+ L GDN GQQYN
Sbjct: 167 ----------VRMAEEHSEFVVGFISGSR--VSMKPEFLHLTPGVQLEAGGDNLGQQYNS 214
Query: 264 PTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRL 307
P +VI RG+D+ +VGRGI A D +EAA Y++ WEAY RL
Sbjct: 215 PQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRL 258
Score = 88.1 bits (218), Expect = 6e-20
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 316 TPFETRKADVKC-RISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHS 374
F R + ++S LL +M KK++NLC++ DV+ A++LL L LGP I +LKTH
Sbjct: 5 LSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHV 64
Query: 375 DAVRDFSEEVQKELTALAKQHEFL 398
D + DF+ +V KEL LAK HEFL
Sbjct: 65 DILNDFTLDVMKELITLAKCHEFL 88
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 130 bits (328), Expect = 3e-35
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 114 LKLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELG-EDRGVFLIA 168
+ ADIG V Q+ I EWA + H + GPG + +++ ++E+ E RG+ ++A
Sbjct: 92 RRFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLA 151
Query: 169 QLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV 228
+LSC+G+L +YT+ T+ +A+S + G +
Sbjct: 152 ELSCKGSLATGEYTK----------------------------GTVDIAKSDKDFVIGFI 183
Query: 229 CQAPSV-LASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGI-TQAP 286
Q L +TPG+ L+ GD GQQY DV+ G+D+ +VGRG+ +
Sbjct: 184 AQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVV-STGSDIIIVGRGLFAKGR 242
Query: 287 DPVEAARRYKEVMWEAYEQRLKKEN 311
D RY++ WEAY +R ++N
Sbjct: 243 DAKVEGERYRKAGWEAYLRRCGQQN 267
Score = 87.8 bits (217), Expect = 8e-20
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 316 TPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSD 375
++ R A +++ L +IM +K++NLC +LDV K+LL L LGP I +LKTH D
Sbjct: 4 ATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVD 63
Query: 376 AVRDFS-EEVQKELTALAKQHEFL 398
+ DFS E K L AL+ ++ FL
Sbjct: 64 ILTDFSMEGTVKPLKALSAKYNFL 87
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 86.6 bits (215), Expect = 7e-20
Identities = 40/194 (20%), Positives = 60/194 (30%), Gaps = 54/194 (27%)
Query: 114 LKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSC 172
LKLADI R + A V VH+ G + ++ E + ++ ++S
Sbjct: 58 LKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVK-------ELGEIIMVVEMSH 110
Query: 173 QGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAP 232
G L L E + G++
Sbjct: 111 PGAL-----------EFINPLTDR-------------FIEVANEIEP-----FGVIAPGT 141
Query: 233 SVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQA 285
G+ L PGI G Q D + GAD +VGR I A
Sbjct: 142 RPERIGYIRDRLKEGIKILAPGI---------GAQGGKAKDAVKA-GADYIIVGRAIYNA 191
Query: 286 PDPVEAARRYKEVM 299
P+P EAA+ + +
Sbjct: 192 PNPREAAKAIYDEI 205
Score = 43.0 bits (102), Expect = 6e-05
Identities = 7/55 (12%), Positives = 24/55 (43%)
Query: 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
+ +ALDV + + + + + + +I+++K + + ++ + L
Sbjct: 2 IVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIA 56
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative
splicing, calcium, chondrogenesis, cleavage on PAIR of
basic residues, cytokine; 1.25A {Homo sapiens} PDB:
3edg_A 3edi_A
Length = 201
Score = 75.6 bits (186), Expect = 4e-16
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 58 ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVP 99
E NF K P E+ G YDFDS+MHY+R FS+ DTIVP
Sbjct: 126 EYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVP 168
Score = 33.2 bits (76), Expect = 0.11
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 40 RWPGGLIPYYIDDDHFCTERN 60
WP G+IP+ I + ++R
Sbjct: 9 VWPDGVIPFVIGGNFTGSQRA 29
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, mutant I218A, LYAS; 1.20A
{Methanothermobacter thermautotrophicusdelta H} PDB:
3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A*
3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A*
3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Length = 228
Score = 73.8 bits (182), Expect = 3e-15
Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 54/199 (27%)
Query: 114 LKLADIGAAVGHQFRLIGE-WAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSC 172
K+ADI R + A + VH G ++ +++E+G R VFL+ ++S
Sbjct: 71 FKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMG--REVFLLTEMSH 128
Query: 173 QG--NLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQ 230
G I ++ ++ G+ V
Sbjct: 129 PGAEMFIQGAADEI-----------------------------ARMGVD-LGV-KNYVGP 157
Query: 231 APSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGIT 283
+ ++PG+ G + G+ LR AD +VGR I
Sbjct: 158 STRPERLSRLREIIGQDSFLISPGVGAQ--GGDPGET---------LRFADAIIVGRSIY 206
Query: 284 QAPDPVEAARRYKEVMWEA 302
A +P AA E + +
Sbjct: 207 LADNPAAAAAGAIESIKDL 225
Score = 41.9 bits (99), Expect = 2e-04
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 329 ISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
+ S +D+M + L +A+D+ D L +T ++ +I +K
Sbjct: 1 MRSRRVDVM-DVMNRLILAMDLMNRDDALRVTGEVREYIDTVK 42
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, Z disulfide bond, hydrolase, metal-binding,
metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Length = 235
Score = 67.9 bits (166), Expect = 3e-13
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 58 ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKNG--DDTIVP 99
NF + G Y + S+MHY + +FS +TIVP
Sbjct: 159 TSNFDID--TYSRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVP 200
Score = 50.6 bits (121), Expect = 2e-07
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 12 NFWEESGQFEGDIML-----EGPERTGVISSIDRWPGGLIPYYIDD 52
+ G FEGDI L ++ W GG+IPY
Sbjct: 10 ALYYNDGMFEGDIKLRAGRQPARVGAAILGDEYLWSGGVIPYTFAG 55
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease,
astacin, metal- protease; 1.10A {Danio rerio}
Length = 199
Score = 66.7 bits (163), Expect = 5e-13
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 58 ERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN-GDDTIVP 99
NF K + + YD+ S+MHY + AF+ G +TI P
Sbjct: 132 AYNFLKQ---KTNNQNTPYDYGSLMHYGKTAFAIQPGLETITP 171
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 62.3 bits (151), Expect = 2e-11
Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 34/186 (18%)
Query: 114 LKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
K AD G V + G A +T A ++ ++ +++ D+G +
Sbjct: 65 TKCADAGGTVAKNNAVRG--ADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYG-- 120
Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
+T + + + + A
Sbjct: 121 ------DWTYDQAQQW------------LDAGISQAIYHQSRDALLAGETWGEKDLNKVK 162
Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
L + +T G+ + + + GRGIT+A +P AAR
Sbjct: 163 KLIEMGFRVSVTGGL-----------SVDTLKLFEGV-DVFTFIAGRGITEAKNPAGAAR 210
Query: 294 RYKEVM 299
+K+ +
Sbjct: 211 AFKDEI 216
Score = 46.9 bits (111), Expect = 4e-06
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 337 MVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHE 396
M K+ NL VALD + K +T +G + V++ + + E+ + L +L
Sbjct: 1 MTKQLPNLQVALDHSNLKGAITAAVSVGNEVDVIEAGTVCLLQVGSELVEVLRSLFPDKI 60
Query: 397 FL 398
+
Sbjct: 61 IV 62
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 59.8 bits (145), Expect = 1e-10
Identities = 34/190 (17%), Positives = 53/190 (27%), Gaps = 38/190 (20%)
Query: 114 LKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
K+ D G G A VTV + +Q R + E G+ V +I
Sbjct: 60 AKIMDGGHFESQLLFDAG--ADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDD-- 115
Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
+ L D T Q+ +
Sbjct: 116 ----------------LPARVRLLEEAGA----DMLAVHTGTDQQAAGRKPIDDL--ITM 153
Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
+ + + GI D L G D+ +VG IT A DP AR
Sbjct: 154 LKVRRKARIAVAGGISSQ-----------TVKDYALL-GPDVVIVGSAITHAADPAGEAR 201
Query: 294 RYKEVMWEAY 303
+ +V+ + +
Sbjct: 202 KISQVLLQHH 211
Score = 38.6 bits (90), Expect = 0.002
Identities = 7/55 (12%), Positives = 19/55 (34%)
Query: 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
L +ALD + + ++ + +++ + + K + E L
Sbjct: 3 LQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVL 57
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 56.9 bits (137), Expect = 1e-09
Identities = 35/208 (16%), Positives = 58/208 (27%), Gaps = 47/208 (22%)
Query: 97 IVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISD 156
V + K+AD G + A VTV A + ++
Sbjct: 46 AVRDLKALYPHKIVLADAKIADAGKILSRMCFEAN--ADWVTVICCADINTAKGALDVAK 103
Query: 157 ELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKL 216
E D + L T E + + + V +
Sbjct: 104 EFNGDVQIELTGYW-------------------TWEQAQQWRDAGI----GQVVYHRSRD 140
Query: 217 AQSFPGLIAGLVCQAPSV-----LASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLR 271
AQ AG+ + L+ + +T G+ L +
Sbjct: 141 AQ-----AAGVAWGEADITAIKRLSDMGFKVTVTGGLALED-----------LPLFKGI- 183
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVM 299
+ + GR I A PVEAAR++K +
Sbjct: 184 PIHVFIAGRSIRDAASPVEAARQFKRSI 211
Score = 36.5 bits (84), Expect = 0.008
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
L VALD TR + + +++ + ++L AL L
Sbjct: 3 LPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVL 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 2e-09
Identities = 62/450 (13%), Positives = 121/450 (26%), Gaps = 140/450 (31%)
Query: 54 HFCTERNFKKYPPSEIT-----DFGVGYDFDSVMHYSRKAFSKNGDDTIV--PHFVMAQN 106
H E +Y +I F +D V + SK D I+ V
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 107 VLWSIIILKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFL 166
L+ ++ K + +F + + L + FL
Sbjct: 66 RLFWTLLSK----QEEMVQKF--------------------------VEEVLRINYK-FL 94
Query: 167 IAQLSCQGN---LIDEKYTQVGFKAITLELKKYLCN-NQVLPKCD-------NDVQETLK 215
++ + + ++ Y +E + L N NQV K + +++ L
Sbjct: 95 MSPIKTEQRQPSMMTRMY---------IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 216 LAQSFPGLI------------AGLVCQAPSVLASNPGLLQLTPGIH-LNQTGDNKGQQYN 262
+ ++ A VC + V I LN N
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------KIFWLN-LK-----NCN 193
Query: 263 GPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKE------------ 310
P V+ + L + T D + +A +RL K
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLLN 252
Query: 311 --NSRIVTPFETRKADVKCRI------SSTLLDIMVKKKSNLCV-----ALDVTQAKDLL 357
N++ F ++ C+I + +++ + L + K LL
Sbjct: 253 VQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 358 ---------TLTRQ---LGP-HIAVL--KTHSDAVR-DFSEEVQKE--LTALAKQHEFLR 399
L R+ P ++++ D + V + T + L
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 400 SRNGWFSPILSSFSLRFRDD-----KTLAM 424
+ + S+ F L++
Sbjct: 368 PAE--YRKMFDRLSV-FPPSAHIPTILLSL 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 6e-09
Identities = 84/458 (18%), Positives = 145/458 (31%), Gaps = 152/458 (33%)
Query: 18 GQFEGDIM-----------LEGPERTGVISSIDRWPGGLIPYYIDDDHFCTERNFKKYPP 66
+FE + L T ++ + + LI YI +R F K
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKE-----LIKNYITARI-MAKRPFDKKSN 142
Query: 67 SE------------ITDFGVG------YDFD--------------SVMHYSRKA---FSK 91
S + FG G Y F+ ++ +S + +
Sbjct: 143 SALFRAVGEGNAQLVAIFG-GQGNTDDY-FEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 92 NGDDTIVPHFVMAQNVL-WSIIILKLAD--------IGAAVGHQFRLIG--EWAHLVTVH 140
D F N+L W L+ + + LIG + AH V
Sbjct: 201 TTLDA-EKVFTQGLNILEW----LENPSNTPDKDYLLSIPI--SCPLIGVIQLAHYVVTA 253
Query: 141 SIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYL--- 197
+ G P + + G +G+ + A + + + + V KAIT+ ++
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGL-VTAVAIAETDSWESFFVSV-RKAITVLF--FIGVR 309
Query: 198 CNNQVLPKCD---NDVQETLKLAQSFPGLIAGLVCQAP--SVLASNPGLLQLTPGI-HLN 251
C + P + ++++L+ + P +P S+ SN Q+ + N
Sbjct: 310 CY-EAYPNTSLPPSILEDSLENNEGVP---------SPMLSI--SNLTQEQVQDYVNKTN 357
Query: 252 QTGDNKGQQY----NGPTD-VIT-----LRGADLGVVGRGITQAPDPVEAARRYKEVMWE 301
Q NG + V++ L G +L + R +AP
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL--RKA-KAPS-------------- 400
Query: 302 AYEQRLKKENSRIVTPFETRKADVKCR---IS----STLLDIMVKKKSNLCVALDVT-QA 353
+Q SRI PF RK R ++ S LL + V +V+ A
Sbjct: 401 GLDQ------SRI--PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 354 KDLLTLTRQLGPHIAVLKTH--SDAVRDFSEEVQKELT 389
KD+ I V T SD +R S + + +
Sbjct: 453 KDI---------QIPVYDTFDGSD-LRVLSGSISERIV 480
Score = 40.0 bits (93), Expect = 0.001
Identities = 58/322 (18%), Positives = 101/322 (31%), Gaps = 105/322 (32%)
Query: 165 FL--IAQLSCQGNLIDEKYTQVGFKAITLEL-KKYLCNNQV-------LPKCDNDVQETL 214
FL ++ L + ++ QV E YL N + L + D + +T
Sbjct: 64 FLGYVSSLVEPSKV--GQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 215 KLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNK------GQQYNGPTDVI 268
+L +++ + A ++ + P SN L + G+ + GQ G TD
Sbjct: 121 ELIKNY--ITARIMAKRPFDKKSNSALFRAV------GEGNAQLVAIFGGQ---GNTDDY 169
Query: 269 --TLRGADL-----GVVGRGITQA--------PDPVEAARRYKEVM----WEAYEQRLKK 309
LR DL +VG I + ++A + + + + W L+
Sbjct: 170 FEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW------LEN 221
Query: 310 ENSRIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLG----- 364
++ + LL I + S C + V Q + + LG
Sbjct: 222 PSNTPDKDY--------------LLSIPI---S--CPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 365 --PHIAVLKTHSDAV------------RDFSEEVQKELTALAKQHEF---LRSRNGWFSP 407
++ HS + F V+K +T L F +R + P
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-----FFIGVRCYEAY--P 315
Query: 408 ILSSFSLRFRDDKTLAMSVPPP 429
S D VP P
Sbjct: 316 NTSLPPSILEDSLENNEGVPSP 337
Score = 37.3 bits (86), Expect = 0.011
Identities = 34/218 (15%), Positives = 60/218 (27%), Gaps = 66/218 (30%)
Query: 25 ML--EGPERTGVISSIDRWPGGLIPYYIDDDH-----FCTERNF----KKYPPSEITDFG 73
ML + V +++ L P +N PP +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHL-P---AGKQVEISLVNGAKNLVVSG---PPQSLYGLN 390
Query: 74 V---------GYDFDSVMHYSRK-AFSKNGDDTIVP-H--------FVMAQNVLWSIIIL 114
+ G D + RK FS P H ++ ++++ + +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 115 KLADIGAAV-----GHQFRLIGE----------------W---AHLVTVHSIA-GPGPLQ 149
DI V G R++ W H + GPG
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 150 EIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFK 187
+ ++ + GV +I + N D+ GFK
Sbjct: 511 GLGVLTHRNKDGTGVRVIVAGTLDINPDDD----YGFK 544
Score = 29.2 bits (65), Expect = 3.1
Identities = 38/239 (15%), Positives = 72/239 (30%), Gaps = 68/239 (28%)
Query: 207 DNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTD 266
D++ +L F G ++ LV PS + +L L L + Y
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLV--EPSKVGQFDQVLNLC----LTEFE----NCY----- 95
Query: 267 VITLRGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETRKADVK 326
L G D+ + + Q D KE++ +RI+ K
Sbjct: 96 ---LEGNDIHALAAKLLQENDTTLVKT--KELIKNYIT-------ARIMAKRPFDK---- 139
Query: 327 CRISSTLLDIMVKKKSNLCVA----------LDVTQAKDLLTLTRQLGPHIAVLKTHSDA 376
+ +S L + + + L + +L R L +T+
Sbjct: 140 -KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----EL----RDLY------QTYHVL 183
Query: 377 VRDFSEEVQKELTALAKQHEFLRSRNGWFSPILSSFS-LRFRDDK-------TLAMSVP 427
V D + + L+ L + F+ L+ L + ++ +S P
Sbjct: 184 VGDLIKFSAETLSELIRTTL---DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 54.6 bits (131), Expect = 8e-09
Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 37/185 (20%)
Query: 114 LKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
+K D GA + G A +TV + A + ++++DEL + + +
Sbjct: 66 MKTTDGGAILSRMAFEAG--ADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNW--- 120
Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
T++ K V + + A+
Sbjct: 121 ----------------TMQDAKAW----VDLGITQAIYHRSRDAELAGIGWTTDDLDKMR 160
Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
L++ L +T GI + + GR + A AA
Sbjct: 161 QLSALGIELSITGGIVPE-----------DIYLFEGI-KTKTFIAGRALAGAEGQQTAAA 208
Query: 294 RYKEV 298
+++
Sbjct: 209 LREQI 213
Score = 39.2 bits (91), Expect = 0.001
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 335 DIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQ 394
+ M K + +ALD T D + + + ++ V++ + + L
Sbjct: 2 NAM--TKPMIQIALDQTNLTDAVAVASNVASYVDVIEVGTILAFAEGMKAVSTLRHNHPN 59
Query: 395 HEFL 398
H +
Sbjct: 60 HILV 63
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 54.2 bits (130), Expect = 9e-09
Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 39/186 (20%)
Query: 114 LKLADIGAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
+K D G G A LVTV A + + + + V LI
Sbjct: 60 MKTMDAGELEADIAFKAG--ADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIED-- 115
Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
+ + Q+ PG +
Sbjct: 116 ----------------KATRAQEVRALGA----KFVEMHAGLDEQAKPGFDLNGLLA--- 152
Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
+ G+ + V GA++ V G I A DP AA+
Sbjct: 153 AGEKARVPFSVAGGV-----------KVATIPAVQK-AGAEVAVAGGAIYGAADPAAAAK 200
Query: 294 RYKEVM 299
+ +
Sbjct: 201 ELRAAI 206
Score = 37.3 bits (86), Expect = 0.004
Identities = 7/55 (12%), Positives = 21/55 (38%)
Query: 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
L VA+D+ + L L ++ ++ +++ + ++ V +
Sbjct: 3 LQVAIDLLSTEAALELAGKVAEYVDIIELGTPLIKAEGLSVITAVKKAHPDKIVF 57
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.00A {Thermotoga maritima} SCOP:
c.1.2.3
Length = 213
Score = 53.0 bits (128), Expect = 3e-08
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 21/102 (20%)
Query: 207 DNDVQETL----KLAQSFPGLIAGLVC--QAPSVLASNPGLLQLTPGIHLNQTGDNKGQQ 260
+ +++ + KL + G ++ A ++ G + L PGI + Q
Sbjct: 121 EGSLEDYMDRIEKLNKL--GC-DFVLPGPWAKALREKIKGKI-LVPGIRM---EVKADDQ 173
Query: 261 YNGPTDVITLR----GADLGVVGRGITQAPDPVEAARRYKEV 298
DV+TL A+ V+GR I + +P E +R KE+
Sbjct: 174 ----KDVVTLEEMKGIANFAVLGREIYLSENPREKIKRIKEM 211
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines,
nucleosides, nucleotides, lyase; 2.00A {Coxiella
burnetii}
Length = 239
Score = 52.2 bits (126), Expect = 7e-08
Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 41/199 (20%)
Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA--QL 170
LK DI V R + E ++ +H G ++ + + LI L
Sbjct: 66 LKFYDIPQTVAGACRAVAELGVWMMNIHISGGRTMMETVVNALQSITLKEKPLLIGVTIL 125
Query: 171 -SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
S +D +LK +V + V LA+S GL G+VC
Sbjct: 126 TS-----LDGS-----------DLKTLGIQEKV----PDIVCRMATLAKS-AGL-DGVVC 163
Query: 230 QAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGR 280
S + L +TPGI L D KG Q P I G+D V+GR
Sbjct: 164 ---SAQEAALLRKQFDRNFLLVTPGIRLE--TDEKGDQKRVMTPRAAIQA-GSDYLVIGR 217
Query: 281 GITQAPDPVEAARRYKEVM 299
ITQ+ DP++A + +
Sbjct: 218 PITQSTDPLKALEAIDKDI 236
Score = 39.8 bits (94), Expect = 7e-04
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 336 IMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
M K + VA+D + L P + LK
Sbjct: 3 AMEKPDPKVIVAIDAGTVEQARAQINPLTPELCHLK 38
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, NPPSFA, national project on structural and
functional analyses; HET: C5P; 2.20A {Geobacillus
kaustophilus} PDB: 2yyt_A*
Length = 246
Score = 52.2 bits (126), Expect = 7e-08
Identities = 51/207 (24%), Positives = 72/207 (34%), Gaps = 36/207 (17%)
Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVF--LIA-- 168
LKL DI V + + A LV VH+ G ++ D + IA
Sbjct: 62 LKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVT 121
Query: 169 QL-SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
QL S DE+ L + L ++ L + V LA+ GL G+
Sbjct: 122 QLTS-----TDER-----------MLHEELWISRPLVET---VAHYAALAKE-SGL-DGV 160
Query: 228 VCQAPSVLA----SNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGRG 281
VC A L +TPGI D Q P L G+D V+GR
Sbjct: 161 VCSANEAAFIKERCGASFLAVTPGIRFA--DDAAHDQVRVVTPRKARAL-GSDYIVIGRS 217
Query: 282 ITQAPDPVEAARRYKEVMWEAYEQRLK 308
+T+A DP+ R + +
Sbjct: 218 LTRAADPLRTYARLQHEWNGGERESTT 244
Score = 34.5 bits (80), Expect = 0.046
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 341 KSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
+ VALD +++ R +K
Sbjct: 4 HTPFIVALDFPSKQEVERFLRPFAGTPLFVK 34
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel,
protein-inhibitor complex, homodimer, lyase; HET: BMQ;
2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A*
1l2u_A
Length = 245
Score = 50.3 bits (121), Expect = 3e-07
Identities = 42/194 (21%), Positives = 63/194 (32%), Gaps = 42/194 (21%)
Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA--QL 170
LK DI H + +V VH+ G + + G+D + LIA L
Sbjct: 72 LKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPL-LIAVTVL 130
Query: 171 -SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
S ++ +L + + L Q GL G+VC
Sbjct: 131 TS-----MEAS-----------DLVDLGMTLSP----ADYAERLAALTQKC-GL-DGVVC 168
Query: 230 QAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGR 280
S +TPGI G G Q P ++ G D V+GR
Sbjct: 169 ---SAQEAVRFKQVFGQEFKLVTPGIRPQ--GSEAGDQRRIMTPEQALSA-GVDYMVIGR 222
Query: 281 GITQAPDPVEAARR 294
+TQ+ DP + +
Sbjct: 223 PVTQSVDPAQTLKA 236
Score = 36.0 bits (84), Expect = 0.013
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
S + VALD D L ++ P LK
Sbjct: 13 TNSPVVVALDYHNRDDALAFVDKIDPRDCRLK 44
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 49.1 bits (118), Expect = 6e-07
Identities = 53/198 (26%), Positives = 72/198 (36%), Gaps = 36/198 (18%)
Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVF--LIA-- 168
LKL DI V + + LV VH+ G +Q +E LIA
Sbjct: 61 LKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVT 120
Query: 169 QL-SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
QL S E+ +K L + L V K A+ GL G+
Sbjct: 121 QLTS-----TSEQ-----------IMKDELLIEKSLIDT---VVHYSKQAEES-GL-DGV 159
Query: 228 VCQAPSVLA----SNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGRG 281
VC A +P L +TPGI ++ D Q P G+ VVGR
Sbjct: 160 VCSVHEAKAIYQAVSPSFLTVTPGIRMS--EDAANDQVRVATPAIAREK-GSSAIVVGRS 216
Query: 282 ITQAPDPVEAARRYKEVM 299
IT+A DPV+A + +
Sbjct: 217 ITKAEDPVKAYKAVRLEW 234
Score = 33.7 bits (78), Expect = 0.080
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
K + +ALD A++ L +K
Sbjct: 2 KNNLPIIALDFASAEETLAFLAPFQQEPLFVK 33
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
infectious diseases; 1.77A {Vibrio cholerae o1 biovar el
tor} PDB: 3uwq_A*
Length = 255
Score = 49.1 bits (118), Expect = 8e-07
Identities = 44/194 (22%), Positives = 65/194 (33%), Gaps = 42/194 (21%)
Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA--QL 170
LK DI + E +V VH+ G + + I + G++R LI L
Sbjct: 85 LKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKER-PLLIGVTVL 143
Query: 171 -SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
S ++ +L+ + + V L ++ GL G+VC
Sbjct: 144 TS-----MESA-----------DLQGIGILSAP----QDHVLRLATLTKN-AGL-DGVVC 181
Query: 230 QAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGR 280
S +TPGI G +G Q P I G+D V+GR
Sbjct: 182 ---SAQEASLLKQHLGREFKLVTPGIRP--AGSEQGDQRRIMTPAQAIAS-GSDYLVIGR 235
Query: 281 GITQAPDPVEAARR 294
ITQA P
Sbjct: 236 PITQAAHPEVVLEE 249
Score = 36.4 bits (85), Expect = 0.012
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 336 IMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
M K + VALD D L ++ P LK
Sbjct: 24 AMNDPK--VIVALDYDNLADALAFVDKIDPSTCRLK 57
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529,
structural genomics, NEW YORK S genomics research
consortium; 2.19A {Lactobacillus acidophilus}
Length = 259
Score = 48.4 bits (116), Expect = 2e-06
Identities = 44/201 (21%), Positives = 68/201 (33%), Gaps = 42/201 (20%)
Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVF--LIA-- 168
LK+ DI V + + + + TVH++ G ++ + L+A
Sbjct: 63 LKMHDIPNTVYNGAKALAKLGITFTTVHALGGSQMIKSAKDGLIAGTPAGHSVPKLLAVT 122
Query: 169 QL-SCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
+L S I + L+ + + V K+A+ G G+
Sbjct: 123 ELTS-----ISDD-----------VLRNEQNCRLPMAEQ---VLSLAKMAKHS-GA-DGV 161
Query: 228 VCQAPSVL-------ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVV 278
+C S L L +TPGI G+ K Q P G+ VV
Sbjct: 162 IC---SPLEVKKLHENIGDDFLYVTPGIRPA--GNAKDDQSRVATPKMAKEW-GSSAIVV 215
Query: 279 GRGITQAPDPVEAARRYKEVM 299
GR IT A DP A K+
Sbjct: 216 GRPITLASDPKAAYEAIKKEF 236
Score = 30.7 bits (70), Expect = 0.88
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 340 KKSNLCVALDVTQAKDLLTLTRQLG-PHIAVLK 371
+ VALD+ + L + +LG PH +K
Sbjct: 3 MDRPVIVALDLDNEEQLNKILSKLGDPHDVFVK 35
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 46.9 bits (112), Expect = 6e-06
Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 34/197 (17%)
Query: 114 LKLADIGAAVGHQFRLIGEW-AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQL-S 171
LK DI + + + ++ +H+ AG +QE+ + + V ++ L S
Sbjct: 83 LKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLSKFSKRPLVLAVSALTS 142
Query: 172 CQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQA 231
DE+ ++++ V K++ GL G+VC
Sbjct: 143 -----FDEENFF---SIYRQKIEEA-------------VINFSKISYE-NGL-DGMVCSV 179
Query: 232 PSVL----ASNPGLLQLTPGIHLNQTGDNKGQQYN--GPTDVITLRGADLGVVGRGITQA 285
++ L LTPGI G+ Q +D VVGR I +
Sbjct: 180 FESKKIKEHTSSNFLTLTPGIRP--FGETNDDQKRVANLAMAREN-LSDYIVVGRPIYKN 236
Query: 286 PDPVEAARRYKEVMWEA 302
+P + +
Sbjct: 237 ENPRAVCEKILNKIHRK 253
Score = 36.9 bits (86), Expect = 0.008
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 337 MVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLK 371
LCVALD++ ++ L L ++L LK
Sbjct: 20 FQSNAMKLCVALDLSTKEECLQLAKELKNLDIWLK 54
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC,
structural genomics, struc genomics consortium, lyase;
HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB:
2guu_A*
Length = 353
Score = 44.8 bits (105), Expect = 3e-05
Identities = 37/203 (18%), Positives = 76/203 (37%), Gaps = 25/203 (12%)
Query: 111 IIILKLADIGAAVGHQFRLIGEW--AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA 168
I+ +K+ DIG V H + I ++ + T + G L++I + +E F++
Sbjct: 165 ILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMGTQMLRDI-CLDEECKRYYSTFVLV 223
Query: 169 QLSC-QGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGL 227
+ + ++ + + G +A + ++ + L +N + + I +
Sbjct: 224 KTTNADSHIFQNRLSLDGKEAYVVIAEEVQKMAKQLHLEENGEFVGFVVGANCYDEIKKI 283
Query: 228 VCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL-----RGADLGVVGRGI 282
P + L PG+ G Q ++ L VGR I
Sbjct: 284 RELFPD------CYI-LAPGV---------GAQKGDLRKMLCNGYSKNYEKVLINVGRAI 327
Query: 283 TQAPDPVEAARRYKEVMWEAYEQ 305
T++ P +AAR Y + + E +
Sbjct: 328 TKSGSPQQAAREYHQQIKEVLAE 350
>3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum,
5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE
NUP; 1.47A {Plasmodium falciparum} PDB: 2qaf_A* 3bar_A*
2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A
2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A
Length = 342
Score = 39.9 bits (92), Expect = 0.001
Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 23/202 (11%)
Query: 111 IIILKLADIGAAVGHQFRLIGEW--AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA 168
I+ +K+ DIG V + + I E+ + TV+ G L++I ++ + F++
Sbjct: 153 ILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEK-NKYYSAFVLV 211
Query: 169 QLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV 228
+ + + + Y+ Q + + + A
Sbjct: 212 KTT------NPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSY 265
Query: 229 CQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVIT--LRGADLGV---VGRGIT 283
+ + P L+PGI G Q +T + + +GR IT
Sbjct: 266 DEMNYIRTYFPNCYILSPGI---------GAQNGDLHKTLTNGYHKSYEKILINIGRAIT 316
Query: 284 QAPDPVEAARRYKEVMWEAYEQ 305
+ P P +AA+ Y + + +Q
Sbjct: 317 KNPYPQKAAQMYYDQINAILKQ 338
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQR 306
GAD V GI + +P+EAARRY + E ++
Sbjct: 185 GADGIAVMSGIFSSAEPLEAARRYSRKLKEMRYEK 219
>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB:
2aqw_A
Length = 352
Score = 37.2 bits (85), Expect = 0.009
Identities = 31/202 (15%), Positives = 77/202 (38%), Gaps = 23/202 (11%)
Query: 111 IIILKLADIGAAVGHQFRLIGEW--AHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIA 168
++ +K+ DIG V + + I E+ + T++ G L++I ++ + +++
Sbjct: 155 MLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMGTSMLKDICFDYEK-NKYYSAYVLI 213
Query: 169 QLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLV 228
+ + + + I + + + + Y+ + K D++ + +
Sbjct: 214 KTTNKDSFIFQNELSIN------DKQAYIVMAEETQKMATDLKIDQNNEFIGFVVGSNAF 267
Query: 229 CQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL-----RGADLGVVGRGIT 283
+ + P L+PGI G Q + L VGR IT
Sbjct: 268 EEMKIIRNKFPDSYILSPGI---------GAQNGDLYKTLKNGYNKDYEKLLINVGRAIT 318
Query: 284 QAPDPVEAARRYKEVMWEAYEQ 305
++P+P +++ Y + + ++
Sbjct: 319 KSPNPKKSSESYYNQIIQIFKD 340
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate
phosphoribosyltransferase, putative
(OMPDCASE-OPRTASE,...; orotidine monophosphate
decarboxylase; 1.70A {Leishmania infantum}
Length = 255
Score = 33.9 bits (77), Expect = 0.076
Identities = 42/199 (21%), Positives = 60/199 (30%), Gaps = 38/199 (19%)
Query: 108 LWSIIILKLADIGAAVGHQFRLIGEW--AHLVTVHSIAGPGPLQEIQRISDELGEDRGVF 165
+ ++ K DI + AH +T G LQ R D+ VF
Sbjct: 77 IPVVLDAKRGDIADTADAYATSAFKHLNAHAITASPYMGSDSLQPFMRY-----PDKAVF 131
Query: 166 LIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIA 225
++ + S K + + Y + N GL+
Sbjct: 132 VLCKTS-------NKGSNDLQCLRVGDRYLYEAVAERAEGPWNV--------NGNVGLVV 176
Query: 226 GLVC--QAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVIT--LRGADLGV---V 278
G V A P L L PGI G Q + LR G+ V
Sbjct: 177 GATDPVALARVRARAPTLWFLVPGI---------GAQGGSLKASLDAGLRADGSGMLINV 227
Query: 279 GRGITQAPDPVEAARRYKE 297
RG+ +A DP AA+ E
Sbjct: 228 SRGLARAADPRAAAKELCE 246
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 33.0 bits (76), Expect = 0.13
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQR 306
GAD + I+QA DP AAR+++E + R
Sbjct: 193 GADGVSMISAISQAEDPESAARKFREEIQTYKTGR 227
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 32.6 bits (75), Expect = 0.16
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVMWEA 302
G D V + A D +A ++++ E
Sbjct: 183 GVDGIAVISAVMGAEDVRKATEELRKIVEEV 213
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 32.7 bits (75), Expect = 0.19
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVM 299
GA VV R IT A DP AA + + +
Sbjct: 212 GARRIVVVRAITSADDPRAAAEQLRSAL 239
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 30.6 bits (70), Expect = 1.0
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 19/59 (32%)
Query: 116 LADI---------GAAVGHQF-------RLIGEWAHLVTVHSIAGPGPLQEIQRISDEL 158
+AD+ G +GHQF R+I H++ + + G P + I+ EL
Sbjct: 210 MADLPGLIEGAHQGVGLGHQFLRHIERTRVI---VHVIDMSGLEGRDPYDDYLTINQEL 265
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center
for structural genomics, MCSG, O 5-phosphate
decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Length = 290
Score = 29.3 bits (65), Expect = 2.5
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 338 VKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEV 384
V K +C+ LD + + ++ K+ S+A+ +++E+
Sbjct: 14 VSKNGFVCIGLDSSIDY--------IPENMKAGKSVSEALFSYNKEI 52
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement
protein, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Mus musculus}
Length = 157
Score = 28.5 bits (63), Expect = 2.7
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 313 RIVTPFETRKADVKCRISSTLLDIMVKKKSNLCVAL--------------DVTQAKDLLT 358
+ P TR D++C + S + + V + L L D + +LT
Sbjct: 28 EVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTLEDRKMVRIVLT 87
Query: 359 LTRQLGPHI--AVLKTHSDAVRDFSEEVQKELTALAKQHE 396
T++ + ++L++ A +++Q++LT Q E
Sbjct: 88 KTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKE 127
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 29.4 bits (66), Expect = 2.8
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 13/53 (24%)
Query: 248 IHLNQTGDN---KGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297
+ N GD KG QY+ +LG PV+ A++Y +
Sbjct: 249 VRTNDQGDLVVTKGDQYDVREKSDGKGVRNLG----------KPVQLAQKYYQ 291
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, PSI-2, protein structure initiative; 1.35A
{Streptomyces avermitilis}
Length = 284
Score = 28.6 bits (63), Expect = 3.5
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 20/59 (33%)
Query: 331 STLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTH-----SDAVRDFSEEV 384
L + + LCV +D PH ++L + FS V
Sbjct: 12 GARLSRAMDDRGPLCVGID---------------PHASLLADWGLSDDVAGLERFSRTV 55
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 28.1 bits (63), Expect = 5.8
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 285 APDPVEAARRYKEVMWEAYEQRLKKENSRIVTPFETR 321
AP+ V+ E+ E ++ + ++
Sbjct: 335 APENVKNLESEIEMGLEDLKEIFPGKRYEVLLIQSYH 371
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 27.5 bits (62), Expect = 8.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 275 LGVVGRGITQAPDPVEAARRYKE 297
+G + A + EA +YKE
Sbjct: 1 MGKRVLIVDDATNGREAVEKYKE 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,716,125
Number of extensions: 416329
Number of successful extensions: 1053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1042
Number of HSP's successfully gapped: 75
Length of query: 434
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 338
Effective length of database: 4,021,377
Effective search space: 1359225426
Effective search space used: 1359225426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)