RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4093
(434 letters)
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 87.2 bits (215), Expect = 5e-20
Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 36/204 (17%)
Query: 115 KLADIGAAVGHQFR----LIGEWAHLVTVHSIAGPGPLQEIQRISDELG-EDRGVFLIAQ 169
K ADIG V Q+ I EWA + H + GPG + +++ ++E+ E RG+ ++A+
Sbjct: 93 KFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAE 152
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
LSC+G+L +Y + T+ +A+S + G +
Sbjct: 153 LSCKGSLSTGEY----------------------------TKGTVDIAKSDKDFVIGFIA 184
Query: 230 QAPSVLAS-NPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGIT-QAPD 287
Q L +TPG+ L+ GD GQQY DV+ G+D+ +VGRG+ + D
Sbjct: 185 QRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVV-STGSDIIIVGRGLFAKGRD 243
Query: 288 PVEAARRYKEVMWEAYEQRLKKEN 311
RY++ WEAY +R +++
Sbjct: 244 AKVEGERYRKAGWEAYLRRCGQQD 267
Score = 74.5 bits (182), Expect = 1e-15
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 318 FETRKADVKCRISSTLLDIMVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAV 377
++ R A +++ L +IM +K++NLC +LDV K+LL L LGP I +LKTH D +
Sbjct: 6 YKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDIL 65
Query: 378 RDFS-EEVQKELTALAKQHEFLRSRNGWFSPI 408
DFS E K L AL+ ++ FL + F+ I
Sbjct: 66 TDFSMEGTVKPLKALSAKYNFLLFEDRKFADI 97
>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}
Length = 332
Score = 70.8 bits (172), Expect = 4e-14
Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 31/206 (15%)
Query: 108 LWSIIILKLADIGAAVGHQFR--LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVF 165
+ +I+ +K+ DIG V H + + T + G L++I + F
Sbjct: 143 VPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMGTQMLRDICLDEEC-KRYYSTF 201
Query: 166 LIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQ--SFPGL 223
++ + + + I + + K V+ + + + L L + F G
Sbjct: 202 VLVKTTNADSHIFQNRLSLDGKEA----------YVVIAEEVQKMAKQLHLEENGEFVGF 251
Query: 224 IAG--LVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL-----RGADLG 276
+ G + + P L PG+ G Q ++ L
Sbjct: 252 VVGANCYDEIKKIRELFPDCYILAPGV---------GAQKGDLRKMLCNGYSKNYEKVLI 302
Query: 277 VVGRGITQAPDPVEAARRYKEVMWEA 302
VGR IT++ P +AAR Y + + E
Sbjct: 303 NVGRAITKSGSPQQAAREYHQQIKEV 328
>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate
decarboxylase {Plasmodium falciparum (isolate 3D7)
(Plasmodium falciparum 3D7) [TaxId: 36329]}
Length = 323
Score = 69.3 bits (168), Expect = 1e-13
Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 28/231 (12%)
Query: 88 AFSKNGDDTIVPHFVMAQNVLWSIII-LKLADIGAAVGHQ--FRLIGEWAHLVTVHSIAG 144
+ G D + F + I+ +K+ DIG V + F + TV+ G
Sbjct: 110 PYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMG 169
Query: 145 PGPLQEIQRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLP 204
L++I ++ L+ + + + + +A + ++ L + L
Sbjct: 170 TNMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLN 229
Query: 205 KCDNDVQETLKLAQSFPGLIAG--LVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYN 262
N+ G + G + + P L+PGI G Q
Sbjct: 230 LEQNNEF---------IGFVVGANSYDEMNYIRTYFPNCYILSPGI---------GAQNG 271
Query: 263 GPTDVITL-----RGADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQRLK 308
+T L +GR IT+ P P +AA+ Y + + +Q ++
Sbjct: 272 DLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQINAILKQNME 322
>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate
decarboxylase {Plasmodium berghei [TaxId: 5821]}
Length = 324
Score = 62.7 bits (151), Expect = 2e-11
Identities = 33/207 (15%), Positives = 76/207 (36%), Gaps = 27/207 (13%)
Query: 108 LWSIIILKLADIGAAVGHQFR--LIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVF 165
+ +++ +K+ DIG V + + + T++ G L++I ++ + +
Sbjct: 133 IPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMGTSMLKDICFDYEK-NKYYSAY 191
Query: 166 LIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIA 225
++ + + + + I + + K + + + K D + F G +
Sbjct: 192 VLIKTTNKDSFIFQNELSINDKQAYIVMAEETQKMATDLKIDQNN--------EFIGFVV 243
Query: 226 GLVCQAPSVLASN--PGLLQLTPGIHLNQTGDNKGQQYNGPTDVITL-----RGADLGVV 278
G + N P L+PGI G Q + L V
Sbjct: 244 GSNAFEEMKIIRNKFPDSYILSPGI---------GAQNGDLYKTLKNGYNKDYEKLLINV 294
Query: 279 GRGITQAPDPVEAARRYKEVMWEAYEQ 305
GR IT++P+P +++ Y + + ++
Sbjct: 295 GRAITKSPNPKKSSESYYNQIIQIFKD 321
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 60.3 bits (145), Expect = 4e-11
Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 19/213 (8%)
Query: 89 FSKNGDDTIVPHFVMAQNVLWSIIILKLADIGAAVGHQFRLIGEWAH-LVTVHSIAGPGP 147
F + G IV L+ + KL DI V + + LV VH+ G
Sbjct: 39 FYQEGPS-IVKQLKERNCELFLDL--KLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKM 95
Query: 148 LQEI-QRISDELGEDRGVFLIAQLSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKC 206
+Q + + + + + ++ + ++ + + V+
Sbjct: 96 MQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKS-------LIDTVVHYS 148
Query: 207 DNDVQETLKLAQSFPGLIAGLVCQAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTD 266
+ L A +P L +TPGI +++ N + P
Sbjct: 149 KQAEESGLDGVVCSV------HEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAI 202
Query: 267 VITLRGADLGVVGRGITQAPDPVEAARRYKEVM 299
+G+ VVGR IT+A DPV+A + +
Sbjct: 203 ARE-KGSSAIVVGRSITKAEDPVKAYKAVRLEW 234
Score = 39.5 bits (91), Expect = 4e-04
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
K + +ALD A++ L +K + + K+L
Sbjct: 2 KNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQL 50
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 59.9 bits (144), Expect = 5e-11
Identities = 28/186 (15%), Positives = 52/186 (27%), Gaps = 18/186 (9%)
Query: 115 KLADIGAAVGHQF-RLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQLSCQ 173
K DI H +V VH+ G + + G + L+ ++
Sbjct: 62 KFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFG--KDAPLLIAVTVL 119
Query: 174 GNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVCQAPS 233
++ + T K A +
Sbjct: 120 TSMEASDL------------VDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQ 167
Query: 234 VLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAAR 293
V +TPGI + ++ P ++ G D V+GR +TQ+ DP + +
Sbjct: 168 VF--GQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSA-GVDYMVIGRPVTQSVDPAQTLK 224
Query: 294 RYKEVM 299
+
Sbjct: 225 AINASL 230
Score = 43.8 bits (102), Expect = 1e-05
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 340 KKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKEL 388
S + VALD D L ++ P LK + F + +EL
Sbjct: 2 TNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVREL 50
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 206
Score = 54.9 bits (131), Expect = 2e-09
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 254 GDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVM 299
G Q D + GAD +VGR I AP+P EAA+ + +
Sbjct: 161 APGIGAQGGKAKDAVKA-GADYIIVGRAIYNAPNPREAAKAIYDEI 205
Score = 39.5 bits (91), Expect = 3e-04
Identities = 6/32 (18%), Positives = 19/32 (59%)
Query: 344 LCVALDVTQAKDLLTLTRQLGPHIAVLKTHSD 375
+ +ALDV + + + + + + +I+++K +
Sbjct: 2 IVLALDVYEGERAIKIAKSVKDYISMIKVNWP 33
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 212
Score = 49.5 bits (117), Expect = 2e-07
Identities = 32/190 (16%), Positives = 55/190 (28%), Gaps = 36/190 (18%)
Query: 111 IIILKLADIGAAV-GHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQ 169
I +ADI A + VH G ++ +++E+G + +
Sbjct: 58 IADFAVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMS 117
Query: 170 LSCQGNLIDEKYTQVGFKAITLELKKYLCNNQVLPKCDNDVQETLKLAQSFPGLIAGLVC 229
I ++ N V P + L+ +
Sbjct: 118 HPGAEMFIQGAADEIARMG-----VDLGVKNYVGPSTRPERLSRLREIIGQDSFL----- 167
Query: 230 QAPSVLASNPGLLQLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPV 289
++PG+ G + G+ LR AD +VGR I A +P
Sbjct: 168 --------------ISPGVGA--QGGDPGET---------LRFADAIIVGRSIYLADNPA 202
Query: 290 EAARRYKEVM 299
AA E +
Sbjct: 203 AAAAGIIESI 212
Score = 38.3 bits (88), Expect = 8e-04
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 337 MVKKKSNLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHE 396
++ + L +A+D+ D L +T ++ +I +K E + K+
Sbjct: 1 VMNR---LILAMDLMNRDDALRVTGEVREYIDTVKIGYPL---VLSEGMDIIAEFRKRFG 54
Query: 397 FL 398
Sbjct: 55 CR 56
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 49.0 bits (116), Expect = 2e-07
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 243 QLTPGIHLNQTGDNKGQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKE 297
L PGI + Q + T A+ V+GR I + +P E +R KE
Sbjct: 147 ILVPGIRM---EVKADDQKDVVTLEEMKGIANFAVLGREIYLSENPREKIKRIKE 198
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 47.9 bits (113), Expect = 5e-07
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 258 GQQYNGPTDVITLRGADLGVVGRGITQAPDPVEAARRYKEVM 299
G + + + GR I A PVEAAR++K +
Sbjct: 169 GLALEDLPLFKGI-PIHVFIAGRSIRDAASPVEAARQFKRSI 209
Score = 43.7 bits (102), Expect = 1e-05
Identities = 11/56 (19%), Positives = 19/56 (33%)
Query: 343 NLCVALDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFL 398
L VALD TR + + +++ + ++L AL L
Sbjct: 3 MLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVL 58
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
(Astacus astacus) [TaxId: 6715]}
Length = 200
Score = 47.1 bits (111), Expect = 9e-07
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 46 IPYYIDDDHFCTERNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN--GDDTIVP 99
+D NF + G Y + S+MHY + +FS +TIVP
Sbjct: 116 NYQNVDPSM---TSNFDID--TYSRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVP 166
Score = 30.5 bits (68), Expect = 0.25
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 34 VISSIDRWPGGLIPYYIDD 52
++ W GG+IPY
Sbjct: 3 ILGDEYLWSGGVIPYTFAG 21
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 36.0 bits (82), Expect = 0.006
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVMWEAYEQ 305
GAD + I+QA DP AAR+++E + + Y+
Sbjct: 192 GADGVSMISAISQAEDPESAARKFREEI-QTYKT 224
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 33.3 bits (75), Expect = 0.039
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVMWEA 302
G D V + A D +A ++++ E
Sbjct: 174 GVDGIAVISAVMGAEDVRKATEELRKIVEEV 204
>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Paracoccus denitrificans [TaxId:
266]}
Length = 80
Score = 29.8 bits (67), Expect = 0.13
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 120 GAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQ 169
A V Q R +W HLV H G P E Q L DR + IAQ
Sbjct: 21 YARVALQRRTPEDWKHLVNFH--LGQFPTLEYQ----ALARDRDWWGIAQ 64
>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Length = 77
Score = 29.4 bits (66), Expect = 0.14
Identities = 19/50 (38%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 120 GAAVGHQFRLIGEWAHLVTVHSIAGPGPLQEIQRISDELGEDRGVFLIAQ 169
GA V Q R EW HLV H G P E Q DR IA
Sbjct: 21 GARVALQRRPAKEWEHLVNFH--LGQWPSLEYQ----AQARDRDWLPIAL 64
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 28.8 bits (63), Expect = 1.00
Identities = 17/125 (13%), Positives = 30/125 (24%), Gaps = 30/125 (24%)
Query: 2 LSLWKNRPSLNFWEESGQFE-------GDIML-EGPERTGVISSIDRWPGGLIPYY---- 49
+W++ L F E + DIM+ G + D G L Y
Sbjct: 35 FRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGP 94
Query: 50 --IDDDHFCTE---------------RNFKKYPPSEITDFGVGYDFDSVMHYSRKAFSKN 92
D HF + + D ++M +
Sbjct: 95 NIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFY-QWMDT 153
Query: 93 GDDTI 97
+ +
Sbjct: 154 ENFVL 158
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 28.5 bits (62), Expect = 1.7
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 139 VHSIAGPGPLQEIQRISDELGEDRGVFL 166
GP P+Q + R+S LG ++
Sbjct: 9 YPLTFGPTPIQPLARLSKHLGGKVHLYA 36
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 27.3 bits (59), Expect = 3.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 144 GPGPLQEIQRISDELGEDRGVFL 166
GP P+ + R+S LG V+
Sbjct: 14 GPSPISNLNRLSQHLGSKVNVYA 36
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 26.6 bits (58), Expect = 4.0
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 367 IAVLKTHSDAVRDFSEEVQKELTALAKQ 394
+ V+ F ++ L LAK
Sbjct: 142 LGVIDIDCLDYEGFDHVDKEFLEKLAKL 169
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 27.0 bits (59), Expect = 4.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 276 GVVGRGITQAPDPVEAARRYKE 297
GV + A DPVEAAR Y E
Sbjct: 20 GVNFVNLRDAGDPVEAARAYDE 41
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 26.7 bits (58), Expect = 5.5
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKEVMWEA 302
GA+ V G I A +P E ++ + +
Sbjct: 189 GANCIVAGSSIFGAAEPGEVISALRKSVEGS 219
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 26.6 bits (58), Expect = 5.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKE 297
GA++ V G + +A D V + +
Sbjct: 189 GANVFVAGSYLFKASDLVSQVQTLRT 214
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 26.3 bits (57), Expect = 6.0
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKE 297
GA++ V G I A DP +
Sbjct: 191 GANIIVAGTSIFNAEDPKYVIDTMRV 216
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 26.2 bits (57), Expect = 7.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYKE 297
GA+ V G + APD EA + K
Sbjct: 200 GANALVAGSAVFGAPDYAEAIKGIKT 225
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 26.2 bits (58), Expect = 8.1
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 348 LDVTQAKDLLTLTRQLGPHIAVLKTHSDAVRDFSEEVQKELTALAKQHEFLRSRNGWF 405
L +D L + G +I +K +V KE K G
Sbjct: 23 LPPKFVEDYLKVC---GDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTL 77
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 25.9 bits (56), Expect = 8.5
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 276 GVVGRGITQAPDPVEAARRYKE 297
G + + DPVE + Y E
Sbjct: 20 GSNFENLRDSGDPVELGKFYSE 41
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 25.9 bits (57), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 272 GADLGVVGRGITQAPDPVEAAR 293
GAD VG GI ++ +P + AR
Sbjct: 211 GADGVFVGSGIFKSENPEKYAR 232
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 25.5 bits (55), Expect = 9.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 364 GPHIAVLKTHSDAVRDFSEEVQKELTALAKQ 394
I VL S F++E ++ L L Q
Sbjct: 115 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 145
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 26.0 bits (57), Expect = 9.1
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 272 GADLGVVGRGITQAPDPVEAARRYK---EVMWEAYE 304
G + ++ I A DPV A K AY
Sbjct: 201 GCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLAYL 236
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 26.0 bits (56), Expect = 9.8
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 264 PTDVITLR--GADLGVVGRGITQAPDPVEAARRYKEVM 299
P + + G VVG IT P E A R+ E +
Sbjct: 195 PEEAKKINDLGVAGIVVGGAIT---RPKEIAERFIEAL 229
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,622,278
Number of extensions: 77339
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 39
Length of query: 434
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,199,356
Effective search space: 414977176
Effective search space used: 414977176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)