BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4094
(663 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 118 bits (296), Expect = 9e-27, Method: Composition-based stats.
Identities = 74/214 (34%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + ++L+K+L+IG G GK+ ++ R+ ++ Y +TIGVDF +K + D +T+ +L
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ + G IV+DVT +F+ V W Q++D T + +
Sbjct: 60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVL 115
Query: 571 CVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
+L+ NKCD + K + + AK EF + N + ETSA D+ N++DA T+ ++I E+
Sbjct: 116 KLLVGNKCDLKDKRVVEYDVAK--EF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 172
Query: 630 DKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
Q ++ E ++N Q N C C
Sbjct: 173 MSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 116 bits (291), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/173 (34%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++++K+L+IG GKTS + RY F+P + +T+G+DF +K + + HE ++LQ+WD
Sbjct: 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTV-YRHEKRVKLQIWDT 79
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQER+ +T YY+ A+G +++D+T +F+AV QD ++ + +L+
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAV----QDWATQIKTYSWDNAQVILVG 135
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NKCD +E + P + + + E +FE SAK+NI++ A + LV I +
Sbjct: 136 NKCDMEEERVV--PTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M +++ L K++++G+ G GKTS++ +YV++ FS Y+ATIG DF K + D + ++ +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++ +Y+ A +VFDVT TF + W+ + + + D P
Sbjct: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
V+L NK D +A A+ + N +FETSAK+ IN++ A +T+ + L
Sbjct: 120 FVVLGNKIDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL--- 174
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
K + + + L++N + + +C+C
Sbjct: 175 KQETEVELYNEFPEPIKLDKNERAKASAESCSC 207
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 117/213 (54%), Gaps = 6/213 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M +++ L K++++G+ G GKTS++ +YV++ FS Y+ATIG DF K + D + ++ +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++ +Y+ A +VFDVT TF + W+ + + + D P
Sbjct: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
V+L NK D +A A+ + N +FETSAK+ IN++ A +T+ + L
Sbjct: 120 FVVLGNKIDFENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL--- 174
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
K + + + L++N + + +C+C
Sbjct: 175 KQETEVELYNEFPEPIKLDKNDRAKASAESCSC 207
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 105/180 (58%), Gaps = 3/180 (1%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M +++ L K++++G+ G GKTS++ +YV++ FS Y+ATIG DF K + D + ++ +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++ +Y+ A +VFDVT TF + W+ + + + D P
Sbjct: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
V+L NK D +A A+ + N +FETSAK+ IN++ A +T+ + L+ +
Sbjct: 120 FVVLGNKIDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 73/214 (34%), Positives = 120/214 (56%), Gaps = 9/214 (4%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + ++L+K+L+IG G GK+ ++ R+ ++ Y +TIGVDF +K + D +T+ +L
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ + G IV+DVT +F+ V W Q++D T + +
Sbjct: 60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVL 115
Query: 571 CVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
+L+ NKCD + K + + AK EF + N + ETSA D+ N++DA T+ ++I E+
Sbjct: 116 KLLVGNKCDLKDKRVVEYDVAK--EF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 172
Query: 630 DKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
Q ++ E ++N Q N C
Sbjct: 173 MSQQNLNETTQKKEDKGNVNLKGQSLTNTGGGCC 206
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 116/213 (54%), Gaps = 6/213 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M +++ L K++++G+ G GKTS++ +YV++ FS Y+ATIG DF K + D + ++ +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-DRLVTM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AG ERF ++ +Y+ A +VFDVT TF + W+ + + + D P
Sbjct: 60 QIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
V+L NK D +A A+ + N +FETSAK+ IN++ A +T+ + L
Sbjct: 120 FVVLGNKIDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL--- 174
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
K + + + L++N + + +C+C
Sbjct: 175 KQETEVELYNEFPEPIKLDKNDRAKASAESCSC 207
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 113 bits (282), Expect = 3e-25, Method: Composition-based stats.
Identities = 60/173 (34%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++++KIL+IG GKTS + RY F+P + +T+G+DF +K + + ++ I+LQ+WD
Sbjct: 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQER+ +T YY+ A+G +++D+T +F+AV QD ++ + +L+
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAV----QDWSTQIKTYSWDNAQVLLVG 117
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NKCD E + + ++ + +H +FE SAKDNIN+ + LV I E
Sbjct: 118 NKCDMEDERVVS--SERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 112 bits (281), Expect = 6e-25, Method: Composition-based stats.
Identities = 66/175 (37%), Positives = 108/175 (61%), Gaps = 9/175 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++L+K+L+IG G GK+ ++ R+ ++ Y +TIGVDF +K + D +T+ +LQ+WD
Sbjct: 19 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KLQIWDT 77
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQERF +T YY+ + G IV+DVT +F+ V W Q++D T + + +L+
Sbjct: 78 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVG 133
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
NKCD + K + + AK EF + N + ETSA D+ N++DA T+ ++I E+
Sbjct: 134 NKCDLKDKRVVEYDVAK--EF-ADANKMPFLETSALDSTNVEDAFLTMARQIKES 185
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 112 bits (280), Expect = 6e-25, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 101/178 (56%), Gaps = 7/178 (3%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
+P ++++K+L+IG GKTS + RY F+P + +T+G+DF +K + + H+ I+L
Sbjct: 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV-YRHDKRIKL 73
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQER+ +T YY+ A+G +++D+ +F AV QD ++ +
Sbjct: 74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV----QDWATQIKTYSWDNAQ 129
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
+L+ NKCD E + PA+ + + +FE SAK+NIN+ + LV I E
Sbjct: 130 VILVGNKCDLEDERVV--PAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 106/183 (57%), Gaps = 4/183 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M +++ + K++++G+ G GKTS++ RYV+ +S Y+ATIG DF K ++ D + + +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++ +Y+ A +V+DVT A++F+ + W+ + + P
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 571 CVLLANKCD--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
V+L NK D + K+ ++ A+ E K F TSAK+ IN+D A + + + L+
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQ--ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
Query: 629 NDK 631
++
Sbjct: 179 QNQ 181
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 111 bits (277), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 108/177 (61%), Gaps = 9/177 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + ++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ +S +++T+ +L
Sbjct: 2 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTV-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ A G IV+DVT +FD V +W Q++D + + + N +
Sbjct: 61 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEID-RYAMENVNKL- 118
Query: 571 CVLLANKCDQ-PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
L+ NKCD K + ++ + E H + ETSAK+ N++ A T+ +I
Sbjct: 119 --LVGNKCDLVSKRVVTSDEGR--ELADSHGIK-FIETSAKNAYNVEQAFHTMAGEI 170
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 7/178 (3%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
S M + ++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI
Sbjct: 7 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI- 65
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
+LQ+WD AGQERF +T YY+ A G +V+DVT +F+ V +W Q++D +
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----EN 121
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
+ +L+ NKCD + + + EF + ETSAK+ N++ + T+ +I
Sbjct: 122 VNKLLVGNKCDLTTKKVVDYTTA-KEFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 177
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 109 bits (273), Expect = 4e-24, Method: Composition-based stats.
Identities = 62/186 (33%), Positives = 103/186 (55%), Gaps = 18/186 (9%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + L+K+L+IG+ G GK+S++ R+ FS Y TIGVDF ++ + + E + +L
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ G +V+DVT A +F V +W +++ + +
Sbjct: 61 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVC 115
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQK 625
+L+ NK D P+ K+ E + F+G FETSAK+N+N+++ + +
Sbjct: 116 RILVGNKNDDPER-------KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITEL 168
Query: 626 ILENDK 631
+L K
Sbjct: 169 VLRAKK 174
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 104/175 (59%), Gaps = 15/175 (8%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++L+K+L+IG+ G GKT ++ R+ F+ + +TIG+DF ++ + D + I +LQ+WD
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KLQIWDT 62
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQERF +T YY+ A+G +V+D+T +FD + W ++++ + + ++L
Sbjct: 63 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILG 118
Query: 576 NKCD-QPKEGIANNPAK---IDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NKCD K ++ + +D IK + ETSAK NIN+++A TL + I
Sbjct: 119 NKCDVNDKRQVSKERGEKLALDYGIK------FMETSAKANINVENAFFTLARDI 167
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 108 bits (271), Expect = 8e-24, Method: Composition-based stats.
Identities = 61/180 (33%), Positives = 105/180 (58%), Gaps = 15/180 (8%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M ++L+K+L+IG+ G GKT ++ R+ F+ + +TIG+DF ++ + D + I +L
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ A+G +V+D+T +FD + W ++++ + +
Sbjct: 60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVE 115
Query: 571 CVLLANKCD-QPKEGIANNPAK---IDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
++L NKCD K ++ + +D IK + ETSAK NIN+++A TL + I
Sbjct: 116 KMILGNKCDVNDKRQVSKERGEKLALDYGIK------FMETSAKANINVENAFFTLARDI 169
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 97/173 (56%), Gaps = 7/173 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++ +KIL+IG GKTS + RY F+P + +T+G+DF +K + + ++ I+LQ+WD
Sbjct: 6 DYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDT 64
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AG ER+ +T YY+ A G + +D+T +F+AV QD ++ + +L+
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAV----QDWSTQIKTYSWDNAQVLLVG 120
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NKCD E + ++ + +H +FE SAKDNIN+ + LV I E
Sbjct: 121 NKCDXEDERVVSSERGRQ--LADHLGFEFFEASAKDNINVKQTFERLVDVICE 171
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
S M + ++L+K+L+IG+ G GK ++ R+ ++ Y +TIGVDF ++ + D +TI
Sbjct: 7 SSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI- 65
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
+LQ+WD AGQERF +T YY+ A G +V+DVT +F+ V +W Q++D +
Sbjct: 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----EN 121
Query: 569 IPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
+ +L+ NKCD K+ + AK EF + ETSAK+ N++ + T+ +I
Sbjct: 122 VNKLLVGNKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 177
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 10/179 (5%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
P +F ++++IG G GKTS+++R+ F ++T+GVDF +K + + I RLQ
Sbjct: 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI-RLQ 78
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
+WD AGQERF ++T YY+ A G +V+D+T+ TFD + KW + +D K D
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAE---L 134
Query: 572 VLLANK--CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
+L+ NK C+ +E K + I F E SAKDN N+D+ LV IL+
Sbjct: 135 LLVGNKLDCETDREITRQQGEKFAQQITGMRFC---EASAKDNFNVDEIFLKLVDDILK 190
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 109/172 (63%), Gaps = 9/172 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA + + D +TI + Q+WD
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQER+ +T YY+ AVGA +V+D+ + T++ V +W ++L D N I +L+
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH---ADSN-IVIMLVG 117
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NK D + + + A+ F +++N S + ETSA D+ N+++A K ++ +I
Sbjct: 118 NKSDLRHLRAVPTDEAR--AFAEKNNLS-FIETSALDSTNVEEAFKNILTEI 166
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI +LQ+WD
Sbjct: 23 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDT 81
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQERF +T YY+ A G +V+DVT +F+ V +W Q++D + + +L+
Sbjct: 82 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVG 137
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NKCD K+ + AK EF + ETSAK+ N++ + T+ +I
Sbjct: 138 NKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 186
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI +LQ+WD
Sbjct: 4 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDT 62
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQERF +T YY+ A G +V+DVT +F+ V +W Q++D + + +L+
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVG 118
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NKCD K+ + AK EF + ETSAK+ N++ + T+ +I
Sbjct: 119 NKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 447 PYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET 506
P S + ++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +T
Sbjct: 22 PXSSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT 81
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
I +LQ+WD AGQERF +T YY+ A G +V+DVT +F+ V +W Q++D +
Sbjct: 82 I-KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS---- 136
Query: 567 NPIPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
+ +L+ NKCD K+ + AK EF + ETSAK+ N++ + T +
Sbjct: 137 ENVNKLLVGNKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFXTXAAE 193
Query: 626 I 626
I
Sbjct: 194 I 194
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI +LQ+WD AG
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDTAG 64
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF +T YY+ A G +V+DVT +F+ V +W Q++D + + +L+ NK
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNK 120
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
CD K+ + AK EF + ETSAK+ N++ + T+ +I
Sbjct: 121 CDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 167
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
MP+ ++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI +L
Sbjct: 3 MPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ A G +V+DVT ++ V +W Q++D + +
Sbjct: 61 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVN 116
Query: 571 CVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
+L+ NK D K+ + N AK EF + ETSAK+ N++ A T+ +I
Sbjct: 117 KLLVGNKSDLTTKKVVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAFMTMAAEI 170
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KIL+IGE G GK+S++ R+ F P ATIGVDF +K +S D +L +WD AGQE
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKA-KLAIWDTAGQE 75
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
RF +T YY+ A G +V+DVTR TF + W +L+ T N I L+ NK D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR---NDIVNXLVGNKID 132
Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
+ + N +F ++H+ + E SAK + A + LV+KI++
Sbjct: 133 KENREVDRNEGL--KFARKHS-XLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 103 bits (258), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
MP+ ++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI +L
Sbjct: 3 MPE-YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ A G +V+DVT ++ V +W Q++D + +
Sbjct: 61 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVN 116
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
+L+ NK D + + +N EF + ETSAK+ N++ A T+ +I
Sbjct: 117 KLLVGNKSDLTTKKVVDNTTA-KEFADSLGIP-FLETSAKNATNVEQAFMTMAAEI 170
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 104/174 (59%), Gaps = 7/174 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
D+ ++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA + + D +TI + Q+
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQI 82
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
WD AGQER+ +T YY+ AVGA +V+D+ + T++ V +W ++L D N I +
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIM 138
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
L+ NK D + P E N + ETSA D+ N++ A +T++ +I
Sbjct: 139 LVGNKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 103/175 (58%), Gaps = 13/175 (7%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
+L+K ++IG+ G GK+ ++ ++ + F P + TIGV+F ++++ D + I +LQ+WD A
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI-KLQIWDTA 78
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
GQE F ++TR YY+ A GA +V+D+TR TF+ + W +D + + + +L+ N
Sbjct: 79 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLIGN 134
Query: 577 KCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA----AKTLVQKI 626
K D + + + + F +EH + ETSAK N+++A AK + +KI
Sbjct: 135 KSDLESRRDVKREEG--EAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKI 186
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 103/177 (58%), Gaps = 9/177 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + ++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI +L
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ A G +V+DVT +F+ V +W Q++D + +
Sbjct: 60 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVN 115
Query: 571 CVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
+L+ KCD K+ + AK EF + ETSAK+ N++ + T+ +I
Sbjct: 116 KLLVGIKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 169
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 447 PYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET 506
P M D +FL+KI++IG G GKT +++R+ F P ATIGVDF +K + + E
Sbjct: 16 PRGSMED-YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
++LQ+WD AGQERF ++T+ YY+ A + +D+T +F + +W ++++ +
Sbjct: 75 -VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS---- 129
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID----DAAKTL 622
N + VL+ NK D + + + +EF + + + ETSAK++ N++ D A L
Sbjct: 130 NKVITVLVGNKIDLAERREVSQ-QRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRL 187
Query: 623 VQKILENDKV 632
+ + +N V
Sbjct: 188 ISEARQNTLV 197
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 58/172 (33%), Positives = 105/172 (61%), Gaps = 9/172 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA + + D +TI + Q+WD
Sbjct: 18 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 76
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQER+ +T YY+ AVGA +V+D+ + T++ V +W ++L D N I +L+
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIMLVG 132
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NK D + + + A+ E N + ETSA D+ N++ A +T++ +I
Sbjct: 133 NKSDLRHLRAVPTDEARA---FAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 98/168 (58%), Gaps = 9/168 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI +LQ+WD AGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDTAGQE 59
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
RF +T YY+ A G +V+DVT +F+ V +W Q++D + + +L+ NKCD
Sbjct: 60 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCD 115
Query: 580 -QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
K+ + AK EF + ETSAK+ N++ + T+ +I
Sbjct: 116 LTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAAEI 160
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 102 bits (253), Expect = 8e-22, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
D ++L+KI++IG+ G GK++++ R+ F+ ++TIGV+FA K + + II+ Q+
Sbjct: 2 DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQI 61
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
WD AGQER+ +T YY+ AVGA +V+D+T+ +F+ + KW ++L D N I +
Sbjct: 62 WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNA---DSN-IVIL 117
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
L+ NK D + N+ ++ K+ + + ETSA + N++ A L+ +I
Sbjct: 118 LVGNKSDLKHLRVIND-NDATQYAKKEKLA-FIETSALEATNVELAFHQLLNEI 169
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
D+ ++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA + + D +TI + Q+
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQI 82
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
WD AG ER+ +T YY+ AVGA +V+D+ + T++ V +W ++L D N I +
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIM 138
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
L+ NK D + P E N + ETSA D+ N++ A +T++ +I
Sbjct: 139 LVGNKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
D+ ++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA + + D +TI + Q+
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQI 61
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
WD AG ER+ +T YY+ AVGA +V+D+ + T++ V +W ++L D N I +
Sbjct: 62 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIM 117
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
L+ NK D + P E N + ETSA D+ N++ A +T++ +I
Sbjct: 118 LVGNKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 101/168 (60%), Gaps = 7/168 (4%)
Query: 452 PDKR-EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
PD++ +FL+K++++G+ GKT +++R+ FS +TIGVDF +K L + + +L
Sbjct: 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRV-KL 80
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T+ YY+ A GA + +D+T+ ++F +V W +D V G+ I
Sbjct: 81 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED----VRKYAGSNIV 136
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618
+L+ NK D E + A+ + ++ ETSAKD+ N+++A
Sbjct: 137 QLLIGNKSD-LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/173 (32%), Positives = 100/173 (57%), Gaps = 9/173 (5%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
+L+K ++IG+ G GK+ ++ ++ + F P + TIGV+F ++++ D + I +LQ+WD A
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQI-KLQIWDTA 67
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
GQE F ++TR YY+ A GA +V+D+TR TF+ + W +D + + +L+ N
Sbjct: 68 GQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQH----SNSNMVIMLIGN 123
Query: 577 KCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
K D + + + + F +EH + ETSAK N+++A ++I E
Sbjct: 124 KSDLESRREVKKEEG--EAFAREHGLI-FMETSAKTASNVEEAFINTAKEIYE 173
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 100 bits (249), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 15/175 (8%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
F++K+++IGE G GKT+++ R+ FS R TIGV+F+ + + ++ Q+WD A
Sbjct: 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTA 82
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL--DAKVTLPDGNPIPCVLL 574
G ER+ +T YY+ AVGA +VFD+T+ T+ V +W ++L A+ T I +L+
Sbjct: 83 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT------IVVMLV 136
Query: 575 ANKCD--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
NK D Q +E P + E+N + ETSA D+ N++ A +T++++I
Sbjct: 137 GNKSDLSQARE----VPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 9/179 (5%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
P +++K ++IG++G GK+ ++ ++ + F TIGV+F +++ + I +LQ
Sbjct: 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI-KLQ 67
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
+WD AGQERF +TR YY+ A GA +V+D+TR +T++ + W D L + N +
Sbjct: 68 IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-I 123
Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
+L+ NK D + + + AK +F +E+ + E SAK N++DA +KI +N
Sbjct: 124 ILIGNKADLEAQRDVTYEEAK--QFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 61/175 (34%), Positives = 102/175 (58%), Gaps = 15/175 (8%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
F++K+++IGE G GKT+++ R+ FS R TIGV+F+ + + ++ Q+WD A
Sbjct: 9 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTA 67
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL--DAKVTLPDGNPIPCVLL 574
G ER+ +T YY+ AVGA +VFD+T+ T+ V +W ++L A+ T I +L+
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT------IVVMLV 121
Query: 575 ANKCD--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
NK D Q +E P + E+N + ETSA D+ N++ A +T++++I
Sbjct: 122 GNKSDLSQARE----VPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 102/174 (58%), Gaps = 7/174 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
D+ ++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA + + D +TI + Q+
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQI 64
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
WD AG ER+ +T YY+ AVGA +V+D+ + T++ V +W ++L D N I
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIX 120
Query: 573 LLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
L+ NK D + P E N + ETSA D+ N++ A +T++ +I
Sbjct: 121 LVGNKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 99.0 bits (245), Expect = 7e-21, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 101/179 (56%), Gaps = 9/179 (5%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
P +++K ++IG++G GK+ ++ ++ + F TIGV+F +++ + I +LQ
Sbjct: 24 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI-KLQ 82
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
+WD AGQ RF +TR YY+ A GA +V+D+TR +T++ + W D L + N +
Sbjct: 83 IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-I 138
Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
+L+ NK D + + + AK +F +E+ + E SAK N++DA +KI +N
Sbjct: 139 ILIGNKADLEAQRDVTYEEAK--QFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQN 194
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 20/220 (9%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
+ L+KI++IG+ G GK++++ R+ F+ ++TIGV+FA + L + + I + Q+WD
Sbjct: 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-KAQIWDT 69
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQER+ +T YY+ AVGA IV+D++++++++ W +L D N + L+
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN---ADDN-VAVGLIG 125
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN-DKVQA 634
NK D + P + + + N + ETSA ++ N+D A + L+ I + K Q
Sbjct: 126 NKSDLAH--LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQM 183
Query: 635 N-GDSHATSEA---------VFSLNRNSQETK--NGRNCA 662
+ GDS A A SL E K NG NC
Sbjct: 184 DLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 98.6 bits (244), Expect = 9e-21, Method: Composition-based stats.
Identities = 57/171 (33%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA + + D +TI + Q+WD
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AG ER+ +T YY+ AVGA +V+D+ + T++ V +W ++L D N I L+
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA---DSN-IVIXLVG 117
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NK D + P E N + ETSA D+ N++ A +T++ +I
Sbjct: 118 NKSDL--RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------- 506
++L K+L +G+ G GKT+ + RY F+P + T+G+DF K + ++ +
Sbjct: 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
+ LQLWD AGQERF ++T ++++A+G ++FD+T +F V W L A
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE-- 140
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NP VL+ NK D P + N + E ++ +FETSA N++ A +TL+ I
Sbjct: 141 NP-DIVLIGNKADLPDQREVNE-RQARELADKYGIP-YFETSAATGQNVEKAVETLLDLI 197
Query: 627 LE 628
++
Sbjct: 198 MK 199
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 21/180 (11%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
+FL+K LVIG G GK+ ++ +++ F TIGV+F +V++ +T+ +LQ+WD
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTV-KLQIWDT 81
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQERF ++TR YY+ A GA +V+D+T T++++ W D TL N I +L
Sbjct: 82 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR---TLASPN-IVVILCG 137
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDA----AKTLVQKI 626
NK D +P + F++ F+ + ETSA N+++A A+T++ KI
Sbjct: 138 NKKDL-------DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 58/177 (32%), Positives = 96/177 (54%), Gaps = 7/177 (3%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + +FL+K LVIG G GK+ ++ +++ + F TIGV+F K+++ + ++L
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKL 61
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++TR YY+ A GA +V+D+T T++A+ W D + I
Sbjct: 62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIV 117
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
+L NK D + + F +E+ + ETSA N+++A +KIL
Sbjct: 118 IILCGNKKDLDADREVTF-LEASRFAQENELM-FLETSALTGENVEEAFVQCARKIL 172
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++ +GE GKTSII R+ + F +Y++TIG+DF K L D E +RLQLWD AGQ
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLD-EGPVRLQLWDTAGQ 60
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ERF ++ Y +++ A +V+D+T +F+ KW QD + G + L+ NK
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQD----ILNERGKDVIIALVGNKT 116
Query: 579 D 579
D
Sbjct: 117 D 117
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
+ KIL+IG+ G GK+ ++ R+V F+P + TIG+DF +K + + + + +LQLWD AG
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQLWDTAG 78
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF +T YY+ A+G +V+DVT TF + +W + ++ + +L+ NK
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 134
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
D + + + KE + E+SAK++ N+++ TL + I E K+ +N
Sbjct: 135 SDMETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 187
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 96.3 bits (238), Expect = 5e-20, Method: Composition-based stats.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
++L K+L +G+ G GKT+ + RY F+P + T+G+DF K + +D +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
+ LQLWD AG ERF ++T ++++A+G ++FD+T +F V W L A
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE-- 126
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NP VL+ NK D P + N + E +++ +FETSA N++ + +TL+ I
Sbjct: 127 NP-DIVLIGNKADLPDQREVNE-RQARELAEKYGIP-YFETSAATGQNVEKSVETLLDLI 183
Query: 627 LE 628
++
Sbjct: 184 MK 185
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 101/183 (55%), Gaps = 9/183 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVH-QFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
D + +K++++G+ G GKT ++ R+ F + + +T+G+DF KVL D ++LQ
Sbjct: 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG-VKVKLQ 63
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
+WD AGQERF ++T YY++A +++DVT A+FD + W ++ + +
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVAL 119
Query: 572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
+LL NK D E + ++ KE+ + ETSAK +N+ D A T + K L+
Sbjct: 120 MLLGNKVDSAHERVVKREDG-EKLAKEYGLP-FMETSAKTGLNV-DLAFTAIAKELKRRS 176
Query: 632 VQA 634
++A
Sbjct: 177 MKA 179
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
E K++V+G GK+S+I+RY F+ Y+ TIGVDF + + + E + RL LWD
Sbjct: 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDV-RLMLWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQE F +T+ YY+ A +VF T +F+A+ W++ + A+V IP L+
Sbjct: 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQ 116
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NK D + N E + + ++ TS K+++N+ + K L +K L+
Sbjct: 117 NKIDLLDDSCIKNEEA--EGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 95.5 bits (236), Expect = 8e-20, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 5/119 (4%)
Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +TI +LQ+WD AGQER
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI-KLQIWDTAGQER 59
Query: 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
F +T YY+ A G +V+DVT +F+ V +W Q++D + + +L+ NKCD
Sbjct: 60 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCD 114
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 95.1 bits (235), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 14/182 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
++L K+L +G+ G GKT+ + RY F+P + T+G+DF K + +D +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
+ LQLWD AG ERF ++T ++++A+G ++FD+T +F V W L A
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE-- 126
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NP VL+ NK D P + N + E +++ +FETSA N++ + +TL+ I
Sbjct: 127 NP-DIVLIGNKADLPDQREVNE-RQARELAEKYGIP-YFETSAATGQNVEKSVETLLDLI 183
Query: 627 LE 628
++
Sbjct: 184 MK 185
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
+ KIL+IG+ G GK+ ++ R+V F+P + TIG+DF +K + + + + +LQLWD AG
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQLWDTAG 65
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF +T YY+ A+G +V+DVT TF + +W + ++ + +L+ NK
Sbjct: 66 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 121
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
D + + + KE + E+SAK++ N+++ TL + I E K+ +N
Sbjct: 122 SDMETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 174
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+KI+++G+ G GK+S++ RYV F TIGV+F K L D + +Q+WD AG
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAG 69
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF ++ +Y+ + + F V + +F + WK++ + + P V+L NK
Sbjct: 70 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 129
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
D + ++ A+ + K++ +FETSAKD+ N+ A + V++IL
Sbjct: 130 TDIKERQVSTEEAQ--AWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 13/160 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + TI RLQLWD AGQ
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTI-RLQLWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK- 577
ERF ++ Y +++ A +V+D+T +F KW D V G+ + +L+ NK
Sbjct: 66 ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 121
Query: 578 --CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
D+ + I K KE N + ETSAK N+
Sbjct: 122 DLADKRQVSIEEGERK----AKELNVM-FIETSAKAGYNV 156
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 94.0 bits (232), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
+P R ++KI+VIG+ GKT + R+ F ATIGVDF + + D E I++
Sbjct: 22 LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER-IKI 80
Query: 511 QLWDIAGQERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI 569
QLWD AGQERF +M + YY+ V+D T A+F ++ W ++ + N I
Sbjct: 81 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLL---ANDI 137
Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK---DNINIDDAAKTLVQKI 626
P +L+ NKCD P + + + + FETSAK DN +++ TL K+
Sbjct: 138 PRILVGNKCDL--RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
+FL+K LVIG G GK+ ++ +++ + F TIGV+F K+++ + ++LQ+WD
Sbjct: 9 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKLQIWDT 67
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQERF ++TR YY+ A GA +V+D+T T++A+ W D + I +L
Sbjct: 68 AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIVIILCG 123
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
NK D + + F +E+ + ETSA ++++A +KIL
Sbjct: 124 NKKDLDADREVTF-LEASRFAQENELM-FLETSALTGEDVEEAFVQCARKIL 173
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + TI RLQLWD AG
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTI-RLQLWDTAGL 72
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK- 577
ERF ++ Y +++ A +V+D+T +F KW D V G+ + +L+ NK
Sbjct: 73 ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 128
Query: 578 --CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
D+ + I K KE N + ETSAK N+
Sbjct: 129 DLADKRQVSIEEGERK----AKELNVM-FIETSAKAGYNV 163
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
++L K+L +G+ G GKT+ + RY F+P + T+G+DF K + +D +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
+ LQLWD AG ERF ++T ++++A G + FD+T +F V W L A
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE-- 126
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NP VL+ NK D P + N + E +++ +FETSA N++ + +TL+ I
Sbjct: 127 NP-DIVLIGNKADLPDQREVNE-RQARELAEKYGIP-YFETSAATGQNVEKSVETLLDLI 183
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
+ KIL+IG+ G GK+ ++ R+V F+P + TIG+DF +K + + + + +LQLWD AG
Sbjct: 3 IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQLWDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF +T YY+ A G +V+DVT TF + +W + ++ + +L+ NK
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
D + + + KE + E+SAK++ N+++ TL + I E K+ +N
Sbjct: 118 SDXETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 170
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 100/178 (56%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
+ KIL+IG+ G GK+ ++ R+V F+P + TIG+DF +K + + + + +LQ+WD AG
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF +T YY+ A+G +V+D+T TF + +W + ++ + +L+ NK
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
D + + + KE + E+SAK++ N+++ TL + I E K+ +N
Sbjct: 118 SDMETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 170
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 14/180 (7%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
++L K+L +G+ G GKT+ + RY F+P + T+G+DF K + +D +
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
+ LQLWD AG ERF ++T ++++A G + FD+T +F V W L A
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE-- 126
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
NP VL+ NK D P + N + E +++ +FETSA N++ + +TL+ I
Sbjct: 127 NP-DIVLIGNKADLPDQREVNE-RQARELAEKYGIP-YFETSAATGQNVEKSVETLLDLI 183
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 92.4 bits (228), Expect = 7e-19, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
R ++KI+VIG+ GKT + R+ F ATIGVDF + + D E I++QLWD
Sbjct: 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER-IKIQLWD 75
Query: 515 IAGQERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVL 573
AGQERF +M + YY+ V+D+T A+F ++ W ++ + N IP +L
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL---ANDIPRIL 132
Query: 574 LANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK---DNINIDDAAKTLVQKI 626
+ NKCD + I +F H+ FETSAK DN +++ TL K+
Sbjct: 133 VGNKCDL-RSAIQVPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 9/158 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + T+ RLQLWD AGQ
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 73
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ERF ++ Y +++ A +V+D+T +F KW D V G+ + +L+ NK
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDD----VRTERGSDVIIMLVGNKT 129
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
D K ++ + KE N + ETSAK N+
Sbjct: 130 DLSDKRQVSTEEG--ERKAKELNVM-FIETSAKAGYNV 164
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 75/121 (61%), Gaps = 7/121 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G++GAGK+S++ R+V F +TIG F + L+ + T+ + ++WD AGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV-KFEIWDTAGQE 72
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLLANKC 578
R+ ++ +YY+ A A IVFDVT A+F+ KW Q+L A+ GNP + L NK
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQ-----GNPNMVMALAGNKS 127
Query: 579 D 579
D
Sbjct: 128 D 128
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G+ G GK+S++ RYV F TIGV+F K L D + +Q+WD AG
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAG 65
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF ++ +Y+ + + F V + +F + WK++ + + P V+L NK
Sbjct: 66 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 125
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
D + ++ A+ + +++ +FETSAKD N+ A + V+++L
Sbjct: 126 IDISERQVSTEEAQ--AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 10/178 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
+ KIL+IG+ G GK+ ++ R+V F+P + TIG+DF +K + + + + +LQ+WD AG
Sbjct: 3 IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF +T YY+ A G +V+D+T TF + +W + ++ + +L+ NK
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
D + + + KE + E+SAK++ N+++ TL + I E K+ +N
Sbjct: 118 SDXETRVVTADQG--EALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 170
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G+ G GK+S++ RYV F TIGV+F K L D + +Q+WD AG
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAG 67
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QERF ++ +Y+ + + F V + +F + WK++ + + P V+L NK
Sbjct: 68 QERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNK 127
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
D + ++ A+ + +++ +FETSAKD N+ A + V+++L
Sbjct: 128 IDISERQVSTEEAQ--AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + T+ RLQLWD AG
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGL 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK- 577
ERF ++ Y +++ A +V+D+T +F KW D V G+ + +L+ NK
Sbjct: 66 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 121
Query: 578 --CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
D+ + I K KE N + ETSAK N+
Sbjct: 122 DLADKRQVSIEEGERK----AKELNVM-FIETSAKAGYNV 156
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 13/160 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + T+ RLQLWD AG
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGL 75
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK- 577
ERF ++ Y +++ A +V+D+T +F KW D V G+ + +L+ NK
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 131
Query: 578 --CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
D+ + I K KE N + ETSAK N+
Sbjct: 132 DLADKRQVSIEEGERK----AKELNVM-FIETSAKAGYNV 166
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 103/179 (57%), Gaps = 9/179 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M ++L+KI++IG+ G GK++++ R+ F+ ++TIGV+FA + + +++ I +
Sbjct: 3 MGYDYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKI-KA 61
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AG ER+ +T YY+ AVGA IV+D++++++++ W +L D N +
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELREN---ADDN-VA 117
Query: 571 CVLLANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
L+ NK D + + AK F E+ + ETSA ++ N+D A + L+ I +
Sbjct: 118 VGLIGNKSDLAHLRAVPTDEAK--NFAMENQML-FTETSALNSDNVDKAFRELIVAIFQ 173
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 7/172 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
+FL+K LVIG G GK+ ++ +++ + F TIGV+F K+++ + ++LQ+WD
Sbjct: 6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKLQIWDT 64
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AG ERF ++TR YY+ A GA +V+D+T T++A+ W D + I +L
Sbjct: 65 AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIVIILCG 120
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
NK D + + F +E+ + ETSA ++++A +KIL
Sbjct: 121 NKKDLDADREVTF-LEASRFAQENELM-FLETSALTGEDVEEAFVQCARKIL 170
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 90.1 bits (222), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 9/172 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YKI++ G+ GK+S + R F + AT+GVDF +K L D E + LQLWD AGQ
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV-LQLWDTAGQ 87
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ERF ++ + Y+++A G +++DVT +F + +W ++ +P +L+ NK
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH----ETVPIMLVGNKA 143
Query: 579 D----QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D EG P E + + + ETSAKD NI +A L +++
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 3/173 (1%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
+ L K++++G+ G GK+S++ RYV F TIGV+F + L D + LQ+WD
Sbjct: 4 KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGR-FVTLQIWD 62
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
AGQERF ++ +Y+ A + F V +F+ + W+++ + D P V+L
Sbjct: 63 TAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVL 122
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
NK D+ + A+ + E+ + ETSAKD+ N+ A + V+++L
Sbjct: 123 GNKVDKEDRQVTTEEAQT--WCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 88/160 (55%), Gaps = 10/160 (6%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETIIRLQ 511
++RE YKI +IG+ G GKT+ I R + F +Y AT+G V+ + L D +I+
Sbjct: 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLD-DQGNVIKFN 64
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
+WD AGQE+ + VYY A GA + FDVT T + +W ++ A V GN P
Sbjct: 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPI 120
Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610
V+ ANK D + ++ I+ + E +K N+ +FE SAK
Sbjct: 121 VVCANKIDIKNRQKISKKL--VMEVLKGKNYE-YFEISAK 157
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 89.0 bits (219), Expect = 7e-18, Method: Composition-based stats.
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 9/171 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + T+ RLQLWD AGQ
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ERF ++ Y +++ A +V+D+T +F KW D V G+ + +L+ NK
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDD----VRTERGSDVIIMLVGNKT 117
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
D K I ++ KE + + ETSAK N+ + + +LE
Sbjct: 118 DLADKRQITIEEG--EQRAKELSVM-FIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++GE GK+SI+ R+V F+ + TIG F + ++ + T+ + ++WD AGQE
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTV-KFEIWDTAGQE 63
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
RF ++ YY+ A A +V+DVT+ +F W ++L + + I L+ NK D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKID 119
Query: 580 QPKEGIANNPAKID-EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
+EG A+ + E + E +FETSAK N++D + +KI
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 89.0 bits (219), Expect = 9e-18, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + T+ RLQLWD AGQ
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 60
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ERF ++ Y +++ A +V+D+T +F KW D V G+ + +L+ NK
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKT 116
Query: 579 D 579
D
Sbjct: 117 D 117
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 88.2 bits (217), Expect = 1e-17, Method: Composition-based stats.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 13/177 (7%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
R + +K++++GE GKTS++ RY F+ + T+G F K L+ + + L +WD
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRV-NLAIWD 61
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
AGQERF + +YY+++ GA +V+D+T +F V W ++L + GN I ++
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIV 117
Query: 575 ANKCDQPKE---GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NK D KE I + + +H + TSAK N I++ L ++++E
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKH-----YHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AGQ
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 10/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I+ +WD AGQ
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGPIKFNVWDTAGQ 74
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 129
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
D + AK F ++ N +++ SAK N N + L +K++
Sbjct: 130 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLI 174
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 13/170 (7%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K+ ++G+ G GK+SI+ R+V F P+ TIG F K + + +E + + +WD AGQE
Sbjct: 7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNE-LHKFLIWDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA-NKC 578
RF + +YY+ + A IV+D+T+ TF + W ++L G P V +A NKC
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-----GPPSIVVAIAGNKC 120
Query: 579 D--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D +E + + + I + + ETSAK+ INI++ + ++I
Sbjct: 121 DLTDVREVMERDAKDYADSIH----AIFVETSAKNAININELFIEISRRI 166
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 85.5 bits (210), Expect = 9e-17, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AGQ
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 117
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 118 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 168
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.5 bits (210), Expect = 9e-17, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLS-WDHETIIRLQLWDIAG 517
+K++++G+ G GKT+ +KR++ F Y ATIGV+ + LS + + I+ +WD AG
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE--VHPLSFYTNFGEIKFDVWDTAG 63
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
E+FG + YY A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 64 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVC----ENIPIVLCGNK 118
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + + AK F ++ N +++ SAK N N + L +K+ N +++
Sbjct: 119 VDVKERKVK---AKTITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLAGNPQLE 170
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLS-WDHETIIRLQLWDIAG 517
+K++++G+ G GKT+ +KR++ F Y ATIGV+ + LS + + I+ +WD AG
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE--VHPLSFYTNFGEIKFDVWDTAG 62
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
E+FG + YY A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 63 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVC----ENIPIVLCGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + + AK F ++ N +++ SAK N N + L +K+ N +++
Sbjct: 118 VDVKERKVK---AKTITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLAGNPQLE 169
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
R + +K++++GE GKTS++ RY F+ + T+ F K L+ + + L +WD
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRV-NLAIWD 61
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
AGQERF + +YY+++ GA +V+D+T +F V W ++L + GN I ++
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIV 117
Query: 575 ANKCDQPKE---GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NK D KE I + + +H + TSAK N I++ L ++++E
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKH-----YHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 13/177 (7%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
R + +K++++GE GKTS++ RY F+ + T+ F K L+ + + L +WD
Sbjct: 17 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRV-NLAIWD 75
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
AGQERF + +YY+++ GA +V+D+T +F V W ++L + GN I ++
Sbjct: 76 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIV 131
Query: 575 ANKCDQPKE---GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NK D KE I + + +H + TSAK N I++ L ++++E
Sbjct: 132 GNKIDLEKERHVSIQEAESYAESVGAKH-----YHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y T+GV+ V + I + +WD AGQ
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AGQ
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AGQ
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AGQ
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLS-WDHETIIRLQLWDIAG 517
+K++++G+ G GKT+ +KR++ F Y ATIGV+ + LS + + I+ +WD AG
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE--VHPLSFYTNFGEIKFDVWDTAG 70
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
E+FG + YY A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 71 LEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVC----ENIPIVLCGNK 125
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + + AK F ++ N +++ SAK N N + L +K+ N +++
Sbjct: 126 VDVKERKVK---AKTITFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLAGNPQLE 177
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AG
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGL 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 120
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 121 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 171
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AG
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGL 71
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 126
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 127 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 177
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE---------T 506
++L K L +G+ G GKTS++ +Y F+ + T+G+DF K + +
Sbjct: 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
I LQLWD AG ERF ++T ++++A+G ++FD+T +F V W L
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY--SE 126
Query: 567 NPIPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
NP VL NK D + + + A+ E +++ +FETSA + NI A + L+
Sbjct: 127 NP-DIVLCGNKSDLEDQRAVKEEEAR--ELAEKYGIP-YFETSAANGTNISHAIEMLLDL 182
Query: 626 ILE 628
I++
Sbjct: 183 IMK 185
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 7/167 (4%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K+ ++G+ G GK+SI+ R+V F + TIG F K + +E + + +WD AGQE
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE-LHKFLIWDTAGQE 83
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
RF ++ +YY+ + A IV+D+T+ +F + KW ++L K P+ I + NKCD
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL--KEHGPEN--IVMAIAGNKCD 139
Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
I P K + E + ETSAK+ INI++ + + ++I
Sbjct: 140 LSD--IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AGQ
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AGQ
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E++G + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 10/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ Y AT+GV+ V + I+ +WD AGQ
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFH-TNRGPIKFNVWDTAGQ 74
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 129
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
D + AK F ++ N +++ SAK N N + L +K++
Sbjct: 130 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLI 174
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K+ ++G+ G GK+SI+ R+V F P+ TIG F K + + +E + + +WD AG E
Sbjct: 8 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE-LHKFLIWDTAGLE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA-NKC 578
RF + +YY+ + A IV+D+T+ TF + W ++L G P V +A NKC
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-----GPPSIVVAIAGNKC 121
Query: 579 D--QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D +E + + + I + + ETSAK+ INI++ + ++I
Sbjct: 122 DLTDVREVMERDAKDYADSIH----AIFVETSAKNAININELFIEISRRI 167
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 94/173 (54%), Gaps = 17/173 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F + +TIG F + + D +T ++ ++WD AGQ
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLD-DTTVKFEIWDTAGQ 67
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T TF W ++L + + P I L NK
Sbjct: 68 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQAS-P---SIVIALAGNKA 123
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKI 626
D +AN ++ E+ + ++ + ETSAK +N++D + +K+
Sbjct: 124 D-----LANK--RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 82.0 bits (201), Expect = 9e-16, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y T+GV+ V + I + +WD AGQ
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPI-KFNVWDTAGQ 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I + +WD AG
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI-KFNVWDTAGL 69
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+FG + YY +A A I+FDVT T+ V W +DL +V IP VL NK
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVC----ENIPIVLCGNKV 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
D + AK F ++ N +++ SAK N N + L +K++ + ++
Sbjct: 125 DIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 175
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 9/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F + +TIG F + + D +T ++ ++WD AGQ
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T TF W ++L + + P+ I L NK
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PN---IVIALAGNKA 118
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D K + A+ + N + ETSAK +N+++ + +K+
Sbjct: 119 DLASKRAVEFQEAQA---YADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AGQ
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
D +AN A +F + +++ + ETSAK ++N+++ + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AGQ
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 67 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 122
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
D +AN A +F + +++ + ETSAK ++N+++ + +K+ +N
Sbjct: 123 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AGQ
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
D +AN A +F + +++ + ETSAK ++N+++ + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AGQ
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
D +AN A +F + +++ + ETSAK ++N+++ + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AGQ
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
D +AN A +F + +++ + ETSAK ++N+++ + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AGQ
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
D +AN A +F + +++ + ETSAK ++N+++ + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F + +TIG F + + D +T ++ ++WD AG
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGL 64
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T TF W ++L + + P+ I L NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PN---IVIALAGNKA 120
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D K + A+ + N + ETSAK +N+++ + +K+
Sbjct: 121 DLASKRAVEFQEAQA---YADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F + +TI F + + D +T ++ ++WD AGQ
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLD-DTTVKFEIWDTAGQ 64
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T TF W ++L + + P+ I L NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS-PN---IVIALAGNKA 120
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D K + A+ + N + ETSAK +N+++ + +K+
Sbjct: 121 DLASKRAVEFQEAQA---YADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AGQ
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 121
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
D +AN A +F + +++ + ETSAK ++N+++ + +K+ +N
Sbjct: 122 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 95/176 (53%), Gaps = 17/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AGQ
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQ 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 67 ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 122
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKILEN 629
D +AN A +F + +++ + ETSAK + N+++ + +K+ +N
Sbjct: 123 D-----LANKRAV--DFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 94/173 (54%), Gaps = 17/173 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D +T ++ ++WD AG
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGL 64
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + + P+ I L NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PN---IVIALSGNKA 120
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSG-----WFETSAKDNINIDDAAKTLVQKI 626
D +AN A +F + +++ + ETSAK ++N+++ + +K+
Sbjct: 121 D-----LANKRAV--DFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G +G GK+++ ++V F Y TI D K + D + + L++ D AG
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCM-LEILDTAGT 63
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV-TLPDGNPIPCVLLANK 577
E+F M +Y K G +V+ +T +TF+ + QDL ++ + D + +P +L+ NK
Sbjct: 64 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDDVPMILVGNK 119
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
CD E + + ++ N + E+SAK IN+++ LV++I
Sbjct: 120 CDLEDERVVGK-EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KI+V+G+ +GKTS+ + + F Y+ TIG+DF L+ ++ + LQ+WDI GQ
Sbjct: 8 KIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQT 67
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
G M Y A G +V+D+T +F+ + W + + P+ L+ NK D
Sbjct: 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL-VALVGNKID 126
Query: 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610
P K F +E+ FS F SAK
Sbjct: 127 LEHMRTI-KPEKHLRFCQENGFSSHF-VSAK 155
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ ++V F Y TI D K + D + + L++ D AG
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCM-LEILDTAGT 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV-TLPDGNPIPCVLLANK 577
E+F M +Y K G +V+ +T +TF+ + QDL ++ + D + +P +L+ NK
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDDVPMILVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
CD E + + ++ N + E+SAK IN+++ LV++I
Sbjct: 118 CDLEDERVVGK-EQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + +++ + + D +P VL+ NKC
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKC 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D P + A+ + + + + ETSAK +DDA TLV++I
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAGRTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ ++V F Y TI D K + D + + L++ D AG
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCM-LEILDTAGT 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV-TLPDGNPIPCVLLANK 577
E+F M +Y K G +V+ +T +TF+ + QDL ++ + D +P +L+ NK
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
CD E + + ++ + E+SAK IN+++ LV++I
Sbjct: 118 CDLEDERVVGK-EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 8/169 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ ++V F Y TI D K + D + + L++ D AG
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCM-LEILDTAGT 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV-TLPDGNPIPCVLLANK 577
E+F M +Y K G +V+ +T +TF+ + QDL ++ + D +P +L+ NK
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTEDVPMILVGNK 117
Query: 578 CDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
CD E + + ++ + E+SAK IN+++ LV++I
Sbjct: 118 CDLEDERVVGK-EQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + +++ + + D +P VL+ NK
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKS 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D P + A+ + + + + ETSAK +DDA TLV++I
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 45/207 (21%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI----------- 507
YK +++GE GK+SI+ R F + TIG F V++ + I
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 508 -------------------------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT 542
I+ +WD AGQER+ ++ +YY+ A A +VFD++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 543 RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFS 602
+ T D W L K++ N I +L+ANK D+ K + + ++ ++ +++N
Sbjct: 128 NSNTLDRAKTWVNQL--KIS---SNYI-IILVANKIDKNKFQV--DILEVQKYAQDNNLL 179
Query: 603 GWFETSAKDNINIDDAAKTLVQKILEN 629
+ +TSAK NI + L ++I +N
Sbjct: 180 -FIQTSAKTGTNIKNIFYMLAEEIYKN 205
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 471 KTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530
K+++ +++ +F Y TI D K+ S D RL + D AGQE FG M Y +
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDG-IPARLDILDTAGQEEFGAMREQYMR 79
Query: 531 EAVGAFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANKCD-QPKEGIANN 588
G +VF + +F+ V K + Q L K D + P VL+ NK D + + + +
Sbjct: 80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVK----DRDDFPVVLVGNKADLESQRQVPRS 135
Query: 589 PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
A F H+ + +FE SAK +N+D+A + LV+ +
Sbjct: 136 EAS--AFGASHHVA-YFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
Y++ V G G GK+S++ R+V F Y T+ D +V+S D ++I LQ+ D G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCD-KSICTLQITDTTGS 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK--WKQDLDAKVTLPDGNPIPCVLLAN 576
+F M R+ + +V+ +T + + LK ++Q + K D IP +L+ N
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEE-LKPIYEQICEIK---GDVESIPIMLVGN 117
Query: 577 KCDQ-PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
KCD+ P + ++ A E + + ETSAK N N+ K L Q++L +K
Sbjct: 118 KCDESPSREVQSSEA---EALARTWKCAFMETSAKLNHNV----KELFQELLNLEK 166
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 79
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + + +F + +++ + + D + +P VL+ NKC
Sbjct: 80 EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK---RVKDSDDVPMVLVGNKC 136
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D P + A E K + + ETSAK ++DA TLV++I
Sbjct: 137 DLPTRTVDTKQAH--ELAKSYGIP-FIETSAKTRQGVEDAFYTLVREI 181
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 10/170 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G+ G GK+++ ++ + F P Y TI D LK D++ I L + D AGQ
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAI-LDVLDTAGQ 76
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E F M Y + G IV+ VT A+F+ V ++ Q + + + D P +L+ANK
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 133
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKI 626
D + + K E ++N + ETSAKD +N+D LV+ I
Sbjct: 134 DLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G +G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 68
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 69 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 125
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 126 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 173
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 471 KTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530
K+++ +++ +F Y TI + + + D RL + D AGQE FG M Y +
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAA--RLDILDTAGQEEFGAMREQYMR 75
Query: 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC--DQPKEGIANN 588
G +VF VT +F+ + K+++ + + + D + P +L+ NK D ++
Sbjct: 76 TGEGFLLVFSVTDRGSFEEIYKFQRQI---LRVKDRDEFPMILIGNKADLDHQRQVTQEE 132
Query: 589 PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
++ +K + E SAK +N+D A LV+ I
Sbjct: 133 GQQLARQLK----VTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGH 79
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + +++ + + D +P VL+ NKC
Sbjct: 80 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKC 136
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D P + A+ + + + + ETSAK +DDA TLV++I
Sbjct: 137 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 181
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 10/170 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G+ G GK+++ ++ + F P Y TI D LK D++ I L + D AGQ
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAI-LDVLDTAGQ 71
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E F M Y + G IV+ VT A+F+ V ++ Q + + + D P +L+ANK
Sbjct: 72 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 128
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKI 626
D + + K E ++N + ETSAKD +N+D LV+ I
Sbjct: 129 DLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 175
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G +G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G +G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 67 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 123
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 124 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 67 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 123
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 124 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 89/171 (52%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G +G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK ++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G G GK+++ ++++ F Y T + KV+ E +++ + D AG
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 71
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QE + + Y++ G VF +T +F A +++ + + + + +P +L+ NK
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 128
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D + K ++ AK E + ETSAK N+D L+++I
Sbjct: 129 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ N+C
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNRC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G G GK+++ ++++ F Y T + KV+ E +++ + D AG
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 75
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QE + + Y++ G VF +T +F A +++ + + + + +P +L+ NK
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 132
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D + K ++ AK E + ETSAK N+D L+++I
Sbjct: 133 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G G GK+++ ++++ F Y T + KV+ E +++ + D AG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 63
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QE + + Y++ G VF +T +F A +++ + + + + +P +L+ NK
Sbjct: 64 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 120
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D + K ++ AK E + ETSAK N+D L+++I
Sbjct: 121 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
+S+++S S M + KI+V+G+ GKT+++ + F +Y T+ F
Sbjct: 6 ASQKLSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTA 62
Query: 501 SWDHETI-IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
S++ +T I L LWD +G + N+ + Y ++ I FD++R T D+VL KWK ++
Sbjct: 63 SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 121
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D GQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTGGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D E I L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGE-ICLLDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y +I + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y +I + +V+ D ET + L + D AGQ
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVI-DGETCL-LDILDTAGQ 67
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 68 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 124
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 125 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 172
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F + TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++ ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREFRQH 166
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGH 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G +G GK+++ + + F Y TI + +V+ D ET + L + D GQ
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTTGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG+
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGK 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGG 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGL 66
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 67 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 123
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 124 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIAGQ 518
KI+V+G+ GKT+++ + F +Y T+ F S++ +T I L LWD +G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLWDTSGS 86
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
+ N+ + Y ++ I FD++R T D+VL KWK ++
Sbjct: 87 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGL 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G +G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + +++ + + D +P VL+ NK
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKS 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D P + A+ + + + + ETSAK +DDA TLV++I
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + +++ + + D +P VL+ NK
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKS 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D P + A+ + + + + ETSAK +DDA TLV++I
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREI 164
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGV 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIAGQ 518
KI+V+G+ GKT+++ + F +Y T+ F S++ +T I L LWD +G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLWDTSGS 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
+ N+ + Y ++ I FD++R T D+VL KWK ++
Sbjct: 66 PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G G GK+++ ++++ F Y T + KV+ E +++ + D AG
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QE + + Y++ G VF +T +F A +++ + + + + +P +L+ NK
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 118
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D + K ++ AK + N + + ETSAK N+D L+++I
Sbjct: 119 SDLEDKRQVSVEEAK--NRADQWNVN-YVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETXL-LDILDTAGG 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AG
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGI 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NKC
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKC 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G+ G GK+++ ++ + F Y TI D LK D++ I L + D AGQ
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAI-LDVLDTAGQ 76
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E F M Y + G IV+ VT A+F+ V ++ Q + + + D P +L+ANK
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 133
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKI 626
D + + K E ++N + ETSAKD +N+D LV+ I
Sbjct: 134 DLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKS 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 83/170 (48%), Gaps = 9/170 (5%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G G GK+++ ++++ F Y T + KV+ E +++ + D AG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 63
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
E + + Y++ G VF +T +F A +++ + + + + +P +L+ NK
Sbjct: 64 LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLVGNK 120
Query: 578 CD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D + K ++ AK E + ETSAK N+D L+++I
Sbjct: 121 SDLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G+ G GK+++ ++ + F Y TI D K D++ I L + D AGQ
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAI-LDVLDTAGQ 76
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E F M Y + G IV+ VT A+F+ V ++ Q + + + D P +L+ANK
Sbjct: 77 EEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI---LRVKDRESFPMILVANKV 133
Query: 579 D-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD-NINIDDAAKTLVQKI 626
D + + K E ++N + ETSAKD +N+D LV+ I
Sbjct: 134 DLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G G GK+++ ++++ F Y T + KV+ E +++ + D AG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 64
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
E + + Y++ G +VF +T +F A +++ Q L K + + IP +++ N
Sbjct: 65 LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVK---AEEDKIPLLVVGN 121
Query: 577 KCDQPKEG---IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
K D + + +K +E+ + + ETSAK N+D L+++I
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQ-----YVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 86/173 (49%), Gaps = 14/173 (8%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G G GK+++ ++++ F Y T + KV+ E +++ + D AG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE--VQIDILDTAG 60
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
E + + Y++ G +VF +T +F A +++ Q L K + + IP +++ N
Sbjct: 61 LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVK---AEEDKIPLLVVGN 117
Query: 577 KCDQPKEG---IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
K D + + +K +E+ + + ETSAK N+D L+++I
Sbjct: 118 KSDLEERRQVPVEEARSKAEEWGVQ-----YVETSAKTRANVDKVFFDLMREI 165
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 460 KILVIGELGAGKTSIIKRYVHQF--FSPHYRATIGVDFALKVLSWDHETI-IRLQLWDIA 516
K+ V+GE GK+++I + + F Y T GV+ + ++ T+ + L L D A
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG-NPIPCVLLA 575
G + + Y+ A +VFDV+ +F++ W + L K PD P+ VL+A
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL--KSARPDRERPLRAVLVA 139
Query: 576 NKCDQP 581
NK D P
Sbjct: 140 NKTDLP 145
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 13/158 (8%)
Query: 471 KTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530
K+S++ R+V F Y TI D +V+S D +++ LQ+ D G +F M R+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCD-KSVCTLQITDTTGSHQFPAMQRLSIS 78
Query: 531 EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNP 589
+ +VF VT + + + +K + K ++ D IP +L+ NKCD+ + +
Sbjct: 79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVMLVGNKCDETQREVDTRE 135
Query: 590 AKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
A+ + + + ETSAK N N+ K L Q++L
Sbjct: 136 AQA---VAQEWKCAFMETSAKMNYNV----KELFQELL 166
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D A Q
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAAQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKX 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K + +G+ GKT ++ Y F Y T+ +F+ V + D + I+ L LWD AGQE
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQ-IVNLGLWDTAGQE 68
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y+ A + F + A+++ VL KW +L + P+ +P VL+ K
Sbjct: 69 DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL--RRFAPN---VPIVLVGTKL 123
Query: 579 D--QPKEGIANNPAKI-----DEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
D K +A++ I +E K+ + + E S+K N+ T ++ +L+
Sbjct: 124 DLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + +V+ D ET + L + D A Q
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETCL-LDILDTAAQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKX 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F TI + +V+ D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVI-DGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKS 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G++ GKT++++ + Y T+ ++ + + E + L LWD +G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET--EEQRVELSLWDTSGSP 70
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
+ N+ + Y ++ + FD++R T D+ L KW+ ++
Sbjct: 71 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 109
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ G GKTS++ + F Y T+ + + + + L +WD AGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKP--VHLHIWDTAGQD 93
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLD 558
+ + ++Y +A + FDVT +FD + +W +++
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN 133
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KI+V+G+ GKT ++ + Y T+ +F+ V+ + +E I L LWD AGQE
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFI-LHLWDTAGQE 82
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y ++ + F V +FD + KW+ ++ + + VL+ K
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-----DTAKTVLVGLKV 137
Query: 579 DQPKEGIAN-NPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D K+G + + D+ ++ + E S+ I +++ + V I N
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KI+V+G+ GKT ++ + Y T+ +F+ V+ + +E I L LWD AGQE
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFI-LHLWDTAGQE 81
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y ++ + F V +FD + KW+ ++ + + VL+ K
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-----DTAKTVLVGLKV 136
Query: 579 DQPKEG 584
D K+G
Sbjct: 137 DLRKDG 142
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G++ GKT++++ + Y T+ ++ + + E + L LWD +G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET--EEQRVELSLWDTSGSP 86
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
+ N+ + Y ++ + FD++R T D+ L KW+ ++
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K + +G+ GKT ++ Y F Y T+ +F+ V+ + + L LWD AGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGATVNLGLWDTAGQE 67
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y+ A + F + A+++ V KW +L K P +P VL+ K
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPG---VPIVLVGTKL 122
Query: 579 D--QPKEGIANNPAKI-------DEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
D K+ ++P + +E K + E S+K N+ ++ +L+
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G++ GKT++++ + Y T+ ++ + + E + L LWD +G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET--EEQRVELSLWDTSGSP 69
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
+ N+ + Y ++ + FD++R T D+ L KW+ ++
Sbjct: 70 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 108
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 64
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + + I F + A+F+ V KW
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 99
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K + +G+ GKT ++ Y F Y T+ +F+ V+ D T+ L LWD AGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVV-DGSTV-NLGLWDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y+ A + F + A+++ + KW +L K P IP VL+ K
Sbjct: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL--KHYAPG---IPIVLVGTKL 120
Query: 579 DQPKEGIANNPAKIDEFIKEH 599
D + +F+K+H
Sbjct: 121 DLRDD---------KQFLKDH 132
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + + I F + A+F+ V KW
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 101
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 97
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KI ++G GK+S+ ++V F Y TI F K+++ + + LQL D AGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEY-HLQLVDTAGQD 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
+ + Y + G +V+ VT +F+ V+ K D+ KV IP +L+ N
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV------QIPIMLVGN 119
Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV 632
K D E + + + + E + + E+SAK+N D + + ILE +K+
Sbjct: 120 KKDLHMERVISYEE--GKALAESWNAAFLESSAKENQTAVDVFRRI---ILEAEKM 170
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
++ ++G +GKT+ + F+ T+G F ++ ++ + TI +LWDI GQ
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTI---KLWDIGGQP 87
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
RF +M Y + G + + AA + + K +L + P IP ++L NK D
Sbjct: 88 RFRSMWERYCR---GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 144
Query: 580 QPKEGIANNPAKIDEFIKEHNFSG-------WFETSAKDNINIDDAAKTLVQ 624
P G + E I++ N S + S K+ NID + L+Q
Sbjct: 145 LP--GALDE----KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KI ++G GK+S+ ++V F Y TI F K+++ + + LQL D AGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEY-HLQLVDTAGQD 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
+ + Y + G +V+ VT +F+ V+ K D+ KV IP +L+ N
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV------QIPIMLVGN 119
Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
K D E + + + + E + + E+SAK+N D + + ILE +K++
Sbjct: 120 KKDLHMERVISYEE--GKALAESWNAAFLESSAKENQTAVDVFRRI---ILEAEKLE 171
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G++ GKT ++ Y F Y T+ +++ V+ + L LWD AGQE
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQE 68
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+++ V KW
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW 103
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y FS Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 72
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 107
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K + +G+ GKT ++ Y F Y T+ +F+ V+ D T+ L LWD AGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGNTV-NLGLWDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y+ A + F + A+++ V KW +L + P +P +L+ K
Sbjct: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL--RHYAPG---VPIILVGTKL 120
Query: 579 D 579
D
Sbjct: 121 D 121
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G GAGKT+++ Y+ +G V + + ++ ET+ I +WD
Sbjct: 19 RILMVGLDGAGKTTVL-----------YKLKLGEVITTIPTIGFNVETVQYKNISFTVWD 67
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ+R ++ R YY+ G V D + + Q + + L + ++
Sbjct: 68 VGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA---AWLVF 124
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSG--WF 605
ANK D P+ A + A+I E + H+ WF
Sbjct: 125 ANKQDLPE---AMSAAEITEKLGLHSIRNRPWF 154
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G GAGKT+++ Y+ +G V + + ++ ET+ I +WD
Sbjct: 19 RILMVGLDGAGKTTVL-----------YKLKLGEVITTIPTIGFNVETVQYKNISFTVWD 67
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ+R ++ R YY+ G V D + + Q + + L + ++
Sbjct: 68 VGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNA---VWLVF 124
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSG--WFETS 608
ANK D P+ A + A+I E + H+ WF S
Sbjct: 125 ANKQDLPE---AMSAAEITEKLGLHSIRNRPWFIQS 157
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G GAGKT+++ Y+ +G V + + ++ ET+ I +WD
Sbjct: 2 RILMVGLDGAGKTTVL-----------YKLKLGEVITTIPTIGFNVETVQYKNISFTVWD 50
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ+R ++ R YY+ G V D + + Q + + L + ++
Sbjct: 51 VGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNA---AWLVF 107
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSG--WF 605
ANK D P+ A + A+I E + H+ WF
Sbjct: 108 ANKQDLPE---AMSAAEITEKLGLHSIRNRPWF 137
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G++ GKT ++ Y F Y T+ +++ V+ + L LWD AGQE
Sbjct: 12 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQE 69
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+++ V KW
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW 104
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
++ ++G +GKT+ + FS T+G F ++ ++ + TI ++WDI GQ
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTI---KIWDIGGQP 78
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
RF +M Y + G + + AA + + + +L + P IP ++L NK D
Sbjct: 79 RFRSMWERYCR---GVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 580 QPKEGIANNPAKIDEFIKEHNFSG-------WFETSAKDNINIDDAAKTLVQ 624
P N + I++ N S + S K+ NID + L+Q
Sbjct: 136 LP------NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G++ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KI ++G GK+S+ ++V F Y TI F K+++ + + LQL D AGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEY-HLQLVDTAGQD 60
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
+ + Y + G +V+ VT +F+ V+ K D+ KV IP +L+ N
Sbjct: 61 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV------QIPIMLVGN 114
Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV 632
K D E + + + + E + + E+SAK+N D + + ILE +K+
Sbjct: 115 KKDLHMERVISYEE--GKALAESWNAAFLESSAKENQTAVDVFRRI---ILEAEKI 165
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 38/150 (25%)
Query: 448 YSKMPDK-----REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG--------VD 494
+S M DK +E +IL++G GAGKT+I+ YR IG +
Sbjct: 5 FSSMFDKLWGSNKEL--RILILGLDGAGKTTIL-----------YRLQIGEVVTTKPTIG 51
Query: 495 FALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT---RAATFDAVL 551
F ++ LS+ + ++L +WD+ GQ R YY + V D T R +T
Sbjct: 52 FNVETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA---- 104
Query: 552 KWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581
++L + + ++ ANK DQP
Sbjct: 105 --SKELHLMLQEEELQDAALLVFANKQDQP 132
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 21/172 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
++ ++G +GKT+ + F+ T+G F ++ ++ + TI +LWDI GQ
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTI---KLWDIGGQP 78
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
RF +M Y + G + + AA + + K +L + P IP ++L NK D
Sbjct: 79 RFRSMWERYCR---GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135
Query: 580 QPKEGIANNPAKIDEFIKEHNFSG-------WFETSAKDNINIDDAAKTLVQ 624
P E I++ N S + S K+ NID + L+Q
Sbjct: 136 LP------GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 181
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKW 97
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQE 63
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 98
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQE 63
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 98
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 13/188 (6%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
S +E + MP R K++++G GKTS+ ++V FS Y T+ ++ K++
Sbjct: 9 SGRENLYFQGMPLVR--YRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIV 65
Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
+ + L L D AGQ+ + + + G +V+ VT +F + + L K
Sbjct: 66 TLGKDE-FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI----ESLYQK 120
Query: 561 VTLPDGNP-IPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618
+ G +P VL+ NK D P+ + K + E + + E+SA++N
Sbjct: 121 LHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK---LAESWGATFMESSARENQLTQGI 177
Query: 619 AKTLVQKI 626
++Q+I
Sbjct: 178 FTKVIQEI 185
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+++ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKW 97
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 75/159 (47%), Gaps = 24/159 (15%)
Query: 448 YSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHET 506
+S++ K+E +IL++G AGKT+I+ Y+ +G + + + ++ ET
Sbjct: 12 FSRLFAKKEM--RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVET 58
Query: 507 I----IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVT 562
+ I +WD+ GQ++ + R Y++ G V D + D V++ + +L +
Sbjct: 59 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD---SNDRDRVVEARDELHRMLN 115
Query: 563 LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF 601
+ ++ ANK D P A N A+I + + H+
Sbjct: 116 EDELRDAVLLVFANKQDLPN---AMNAAEITDKLGLHSL 151
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +++G+ GKTS++ Y + Y T +F+ V+S D + RLQL D AGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPV-RLQLCDTAGQD 79
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
F + + Y + F V ++F V KW
Sbjct: 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKW 114
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 81
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 116
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G GAGKT+I+ YR +G V + + ++ ET+ ++ Q+WD
Sbjct: 4 RILILGLDGAGKTTIL-----------YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWD 52
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ R YY V D + D + K +L A + + V+
Sbjct: 53 LGGQTSIRPYWRCYYSNTDAVIYVVD---SCDRDRIGISKSELVAMLEEEELRKAILVVF 109
Query: 575 ANKCDQPKEGIANNPAKIDE-----FIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
ANK D + A P+++ +K+ + F+TSA +D+A + LV+ +
Sbjct: 110 ANKQDMEQ---AMTPSEMANALGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLVETL 162
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 72
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 107
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 64
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 99
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 89
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 12 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 69
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 104
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 100
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 63
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 98
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 100
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516
+ K +V+G+ GKT ++ Y + F Y T+ +A+ V + + L L+D A
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYL--LGLYDTA 74
Query: 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLA 575
GQE + + + Y I F V A+F V +W +L K P+ +P +L+
Sbjct: 75 GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL--KEYAPN---VPFLLIG 129
Query: 576 NKCD 579
+ D
Sbjct: 130 TQID 133
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GK ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 69
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 104
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 2 RILMLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 50
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 51 VGGQDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREMRDAIILIF 107
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 108 ANKQDLPD---AMKPHEIQE 124
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGQE 64
Query: 520 RFGNMTRVYYKEAVGAFIVFDVT 542
+ + + Y + VG D+T
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDIT 87
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 101
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAG 212
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
E + + + Y + I F + A+F V KW
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW 249
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y Y T+ +++ V+ + L LWD AGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQE 89
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + I F + A+F+ V KW ++ + P+ P +L+ K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--RHHCPN---TPIILVGTKL 144
Query: 579 D 579
D
Sbjct: 145 D 145
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 2 RILMLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 50
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 51 VGGQDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREMRDAIILIF 107
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 108 ANKQDLPD---AMKPHEIQE 124
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAG 212
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
E + + + Y + I F + A+F V KW
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW 249
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 15 RILMLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 63
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 64 VGGQDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 121 ANKQDLPD---AMKPHEIQE 137
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAG 212
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
E + + + Y + I F + A+F V KW
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKW 249
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 64
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 99
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GK ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 69
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 104
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 14 RILMLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 62
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 63 VGGQDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREMRDAIILIF 119
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 120 ANKQDLPD---AMKPHEIQE 136
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL +G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 2 RILXLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 50
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 51 VGGQDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREXRDAIILIF 107
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 108 ANKQDLPD---AXKPHEIQE 124
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGLE 89
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + I F + A+F+ V KW ++ + P+ P +L+ K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV--RHHCPN---TPIILVGTKL 144
Query: 579 D 579
D
Sbjct: 145 D 145
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 324 RILMLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 372
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 373 VGGQDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREMRDAIILIF 429
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 430 ANKQDLPD---AMKPHEIQE 446
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ D + + L LWD AG E
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPV-NLGLWDTAGLE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 100
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD--GNPI 569
++D++GQ R+ N+ YYKE G I+F + + V+ K++LD + PD I
Sbjct: 71 VFDMSGQGRYRNLWEHYYKE--GQAIIFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRI 127
Query: 570 PCVLLANKCD 579
P + ANK D
Sbjct: 128 PILFFANKMD 137
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G GAGKT+++ Y+ +G V + + ++ E + I +WD
Sbjct: 19 RILMVGLDGAGKTTVL-----------YKLKLGEVITTIPTIGFNVECVQYCNISFTVWD 67
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ+R ++ R YY G V D + + Q + + L + ++
Sbjct: 68 VGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNA---AWLVF 124
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSG--WF 605
ANK D P+ A + A+I E + H+ WF
Sbjct: 125 ANKQDLPE---AMSAAEITEKLGLHSIRNRPWF 154
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 440 GSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV 499
GS ++ KM K L ++L++G AGKT+I+K+ F+ TI +
Sbjct: 1 GSMGLLTILKKMKQKEREL-RLLMLGLDNAGKTTILKK-----FNGEDVDTISPTLGFNI 54
Query: 500 LSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDA 559
+ +H +L +WD+ GQ+ + R Y++ G V D + Q L
Sbjct: 55 KTLEHRGF-KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLV 113
Query: 560 KVTLPDGNPIPCVLLANKCDQP 581
+ L ++ ANK D P
Sbjct: 114 EERLAGAT---LLIFANKQDLP 132
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGLE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 30/159 (18%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G V + + ++ ET+ I +WD
Sbjct: 19 RILMVGLDAAGKTTIL-----------YKVKLGEVVTTIPTIGFNVETVEFRNISFTVWD 67
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R YY G V D D +++L + + ++
Sbjct: 68 VGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDA---REELHRMINEEELKDAIILVF 124
Query: 575 ANKCDQPKEGIANNPAKIDE-----FIKEHNFSGWFETS 608
ANK D P A + A++ E I+E N WF S
Sbjct: 125 ANKQDLPN---AMSAAEVTEKLHLNTIRERN---WFIQS 157
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ +++ V+ + L LWD AG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGLE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKW 553
+ + + Y + I F + A+F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 97
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 440 GSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV 499
GS ++ KM K L ++L++G AGKT+I+K+ F+ TI +
Sbjct: 1 GSMGLLTILKKMKQKEREL-RLLMLGLDNAGKTTILKK-----FNGEDVDTISPTLGFNI 54
Query: 500 LSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD 540
+ +H +L +WD+ GQ+ + R Y++ G V D
Sbjct: 55 KTLEHRGF-KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 94
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 31/189 (16%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA------LKVLSWDHETI-IRLQL 512
K+ +IG+ AGKTS++K+ + + F P T G++ +K L D E
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD----GNP 568
WD GQ E + A F +TR++ + +L + D + L G
Sbjct: 103 WDFGGQ------------EIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGK 150
Query: 569 IPCVLLANKCDQ-PKEGIANNPAKIDEFIK--EHNFSGWFETSAKDNINIDDAAKTLVQK 625
P +++ NK D+ P I KI+E E+ F S K+ ++ AK+L
Sbjct: 151 SPVIVVMNKIDENPSYNIEQK--KINERFPAIENRFH---RISCKNGDGVESIAKSLKSA 205
Query: 626 ILENDKVQA 634
+L D +
Sbjct: 206 VLHPDSIYG 214
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ + L+ D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLR--DTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KI ++G GK+S+ ++V F TI F K+++ + + LQL D AGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEY-HLQLVDTAGQD 63
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWK-QDLDAKVTLPDGNPIPCVLLAN 576
+ + Y + G +V+ VT +F+ V+ K D+ KV IP +L+ N
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV------QIPIMLVGN 117
Query: 577 KCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
K D E + + + + E + + E+SAK+N D + + ILE +K
Sbjct: 118 KKDLHMERVISYEE--GKALAESWNAAFLESSAKENQTAVDVFRRI---ILEAEK 167
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%)
Query: 450 KMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIR 509
KM K L ++L++G AGKT+I+K+ F+ TI + + +H +
Sbjct: 9 KMKQKEREL-RLLMLGLDNAGKTTILKK-----FNGEDIDTISPTLGFNIKTLEHRGF-K 61
Query: 510 LQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI 569
L +WD+ GQ+ + R Y++ G V D + Q L + L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-- 119
Query: 570 PCVLLANKCDQPKEGIANNPAKIDEF--IKEHNF 601
++ ANK D P +N ++ E I+ H++
Sbjct: 120 -LLIFANKQDLPGALSSNAIREVLELDSIRSHHW 152
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGLE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 36/181 (19%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G GAGKT+I+ YR +G V + + ++ ET+ ++ Q+WD
Sbjct: 6 RILILGLDGAGKTTIL-----------YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWD 54
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ G R YY V D + D + K +L A + + V+
Sbjct: 55 LGGLTSIRPYWRCYYSNTDAVIYVVD---SCDRDRIGISKSELVAMLEEEELRKAILVVF 111
Query: 575 ANKCDQPK----EGIANN---PAKIDEFIKEHNFSGW--FETSAKDNINIDDAAKTLVQK 625
ANK D + +AN+ PA D W F+TSA +D+A + LV+
Sbjct: 112 ANKQDMEQAMTSSEMANSLGLPALKDR--------KWQIFKTSATKGTGLDEAMEWLVET 163
Query: 626 I 626
+
Sbjct: 164 L 164
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 21/139 (15%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI 507
SK+ K+E +IL++G AGKTSI+ Y+ +G + + + ++ ET+
Sbjct: 10 SKLLGKKEM--RILMVGLDAAGKTSIL-----------YKLKLGEIVTTIPTIGFNVETV 56
Query: 508 ----IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTL 563
I +WD+ GQ++ + R YY+ V D + D + + +++L +
Sbjct: 57 EYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVD---SNDRDRIGEAREELMKMLNE 113
Query: 564 PDGNPIPCVLLANKCDQPK 582
+ ++ ANK D P+
Sbjct: 114 DEMRNAILLVFANKHDLPQ 132
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 459 YKILVIGELGAGKTSIIKRY--VHQFFSPHYRATIGVDFALKVLSWDHE--TIIRLQLWD 514
Y++++IGE G GK+++ + VH +G D + L D E TII L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
G+ + + + +A IV+ +T A+F+ + + L D IP +L+
Sbjct: 66 NKGENEWLHDHCMQVGDAY--LIVYSITDRASFEKASELRIQLRRARQTED---IPIILV 120
Query: 575 ANKCD 579
NK D
Sbjct: 121 GNKSD 125
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 459 YKILVIGELGAGKTSIIKRY--VHQFFSPHYRATIGVDFALKVLSWDHE--TIIRLQLWD 514
Y++++IGE G GK+++ + VH +G D + L D E TII L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
G+ + + + +A IV+ +T A+F+ + + L D IP +L+
Sbjct: 66 NKGENEWLHDHXMQVGDAY--LIVYSITDRASFEKASELRIQLRRARQTED---IPIILV 120
Query: 575 ANKCD 579
NK D
Sbjct: 121 GNKSD 125
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y + ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ L L+D AG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGLE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 101
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y Y T+ ++A+ V+ L L+D AGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEP--YTLGLFDTAGQE 62
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KW 553
+ + + Y + + F V ++F+ V KW
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 459 YKILVIGELGAGKTSIIKRY--VHQFFSPHYRATIGVDFALKVLSWDHE--TIIRLQLWD 514
Y++++IGE G GK+++ + VH +G D + L D E TII L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWE 65
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
G+ + + + +A IV+ +T A+F+ + + L D IP +L+
Sbjct: 66 NKGENEWLHDHCMQVGDAY--LIVYSITDRASFEKASELRIQLRRARQTED---IPIILV 120
Query: 575 ANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI-LENDKV 632
NK D + ++ + + + + F ETSA N+ + + +V+++ L D
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKF---IETSAAVQHNVKELFEGIVRQVRLRRDSK 177
Query: 633 QAN 635
+ N
Sbjct: 178 EKN 180
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G AGKT+I+ ++ H TIG + V++ R +WDI GQ
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVIN-----NTRFLMWDIGGQ 70
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + YY +V D T +++L + D ++ ANK
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYKMLAHEDLRKAGLLIFANKQ 127
Query: 579 DQPKEGIANNPAKIDEFIK 597
D KE + A+I +F+K
Sbjct: 128 DV-KECM--TVAEISQFLK 143
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G AGKT+I+ ++ H TIG + V++ R +WDI GQ
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVIN-----NTRFLMWDIGGQ 75
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + YY +V D T +++L + D ++ ANK
Sbjct: 76 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYKMLAHEDLRKAGLLIFANKQ 132
Query: 579 DQPKEGIANNPAKIDEFIK 597
D KE + A+I +F+K
Sbjct: 133 DV-KECM--TVAEISQFLK 148
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G AGKT+I+ ++ H TIG + V++ R +WDI GQ
Sbjct: 23 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVIN-----NTRFLMWDIGGQ 76
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + YY +V D T +++L + D ++ ANK
Sbjct: 77 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYKMLAHEDLRKAGLLIFANKQ 133
Query: 579 DQPKEGIANNPAKIDEFIK 597
D KE + A+I +F+K
Sbjct: 134 DV-KECM--TVAEISQFLK 149
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G AGKT+I+ ++ H TIG + V++ R +WDI GQ
Sbjct: 17 HKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVIN-----NTRFLMWDIGGQ 70
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + YY +V D T +++L + D ++ ANK
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYKMLAHEDLRKAGLLIFANKQ 127
Query: 579 DQPKEGIANNPAKIDEFIK 597
D KE + A+I +F+K
Sbjct: 128 DV-KECM--TVAEISQFLK 143
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 4 RILMLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 52
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ G ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 53 VGGLDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREMRDAIILIF 109
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 110 ANKQDLPD---AMKPHEIQE 126
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 15 RILMLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 63
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ G ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 64 VGGLDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 121 ANKQDLPD---AMKPHEIQE 137
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Query: 471 KTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530
K+++ ++V F Y TI DF K + D + L++ D AG E+F +M +Y K
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIK 73
Query: 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPA 590
G +V+ + +F + K D + + +P +L+ NK D E +
Sbjct: 74 NGQGFILVYSLVNQQSFQDI---KPMRDQIIRVKRYEKVPVILVGNKVDLESE--REVSS 128
Query: 591 KIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
+ E + ETSAK +D+ +V+++
Sbjct: 129 SEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + ++ ET+ ++ +WD
Sbjct: 5 RILMLGLDAAGKTTIL-----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 53
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ G ++ + R YY G V D A D + + +Q+L + + ++
Sbjct: 54 VGGLDKIRPLWRHYYTGTQGLIFVVD---CADRDRIDEARQELHRIINDREMRDAIILIF 110
Query: 575 ANKCDQPKEGIANNPAKIDE 594
ANK D P A P +I E
Sbjct: 111 ANKQDLPD---AMKPHEIQE 127
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + + ++ ET+ I +WD
Sbjct: 18 RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 66
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R Y++ G V D + + + A+ L D ++
Sbjct: 67 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA---VLLVF 123
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNF--SGWF 605
ANK D P A N A+I + + H+ W+
Sbjct: 124 ANKQDLPN---AMNAAEITDKLGLHSLRHRNWY 153
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + + ++ ET+ I +WD
Sbjct: 19 RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 67
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R Y++ G V D + + + A+ L D ++
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA---VLLVF 124
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNF--SGWF 605
ANK D P A N A+I + + H+ W+
Sbjct: 125 ANKQDLPN---AMNAAEITDKLGLHSLRHRNWY 154
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G++ GKT ++ + F Y T+ ++ + D + + L LWD AGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQV-ELALWDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 66 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 120
Query: 579 D 579
D
Sbjct: 121 D 121
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + + ++ ET+ I +WD
Sbjct: 2 RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 50
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R Y++ G V D + + + A+ L D ++
Sbjct: 51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA---VLLVF 107
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNF--SGWF 605
ANK D P A N A+I + + H+ W+
Sbjct: 108 ANKQDLPN---AMNAAEITDKLGLHSLRHRNWY 137
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 459 YKILVIGELGAGKTSIIKRY--VHQFFSPHYRATIGVDFALKVLSWDHE--TIIRLQLWD 514
Y++++IGE G GK+++ + VH +G D + L D E TII L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWE 96
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
G+ + + + +A IV+ +T A+F+ + + L D IP +L+
Sbjct: 97 NKGENEWLHDHCMQVGDAY--LIVYSITDRASFEKASELRIQLRRARQTED---IPIILV 151
Query: 575 ANKCD 579
NK D
Sbjct: 152 GNKSD 156
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDH 504
S +S++ K++ +IL++G AGKT+I+ Y+ +G + + + ++
Sbjct: 7 SLFSRLFGKKQM--RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNV 53
Query: 505 ETI----IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
ET+ I +WD+ GQ+R + + Y++ G V D V Q +
Sbjct: 54 ETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLV 113
Query: 561 VTLPDGNPIPCVLLANKCDQP 581
L D +L ANK D P
Sbjct: 114 DELRDA---VLLLFANKQDLP 131
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++V+G+ GKT ++ + F Y T+ ++ + D + + L LWD AGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQV-ELALWDTAGQE 84
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F V + + + KW ++ K P+ +P +L+ANK
Sbjct: 85 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV--KHFCPN---VPIILVANKK 139
Query: 579 D 579
D
Sbjct: 140 D 140
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++G AGKT+I+ +++ H TIG + V+ H +WDI GQ
Sbjct: 17 HKVIIVGLDNAGKTTILYQFLMNEVV-HTSPTIGSNVEEIVVKNTH-----FLMWDIGGQ 70
Query: 519 ERFGNMTRVYYKEAVGAFIVFD 540
E + YY +V D
Sbjct: 71 ESLRSSWNTYYSNTEFIILVVD 92
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + + + L LWD AGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ--VELALWDTAGQE 68
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 69 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 123
Query: 579 D 579
D
Sbjct: 124 D 124
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 18/100 (18%)
Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDH 504
S +S++ K++ +IL++G AGKT+I+ Y+ +G + + + ++
Sbjct: 19 SLFSRIFGKKQM--RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNV 65
Query: 505 ETI----IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD 540
ET+ I +WD+ GQ++ + R Y++ G V D
Sbjct: 66 ETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 105
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + + + L LWD AGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ--VELALWDTAGQE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 67 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 121
Query: 579 D 579
D
Sbjct: 122 D 122
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G++ GKT ++ + F Y T+ ++ + + + L LWD AGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQ--VELALWDTAGQE 64
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 65 DYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 119
Query: 579 D 579
D
Sbjct: 120 D 120
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + + + L LWD AGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ--VELALWDTAGQE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 67 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 121
Query: 579 D 579
D
Sbjct: 122 D 122
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + + + L LWD AGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ--VELALWDTAGQE 65
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 66 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 120
Query: 579 D 579
D
Sbjct: 121 D 121
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 24/132 (18%)
Query: 460 KILVIGELGAGKTSIIKRYV-HQFFSPHYRATIGVDFALKVLSWDHETI----IRLQLWD 514
++++ G +GKT+II + Q S H AT+G ++ ET + ++D
Sbjct: 19 QVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG---------YNVETFEKGRVAFTVFD 69
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTR-------AATFDAVLKWKQDLDAKVTLPDGN 567
+ G ++F + YY V D + + A+LK + D + LP G
Sbjct: 70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHE---DIRRELPGGG 126
Query: 568 PIPCVLLANKCD 579
+P + ANK D
Sbjct: 127 RVPFLFFANKMD 138
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ F Y T+ ++ V + L LWD AGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRR--VELALWDTAGQE 69
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y ++ I F + + + V KW ++ L +P +L+ K
Sbjct: 70 DYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-----LHFCQGVPIILVGCKV 124
Query: 579 DQPKEGIANNPAKIDEFIKE 598
D + N+P I++ +E
Sbjct: 125 D-----LRNDPQTIEQLRQE 139
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 22/102 (21%)
Query: 534 GAFIVFDVTRAAT--FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAK 591
G + DV+R FD LK+ +L ++ P V++ KCD EG+
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA---KTKKPIVVVLTKCD---EGV------ 212
Query: 592 IDEFIKE-HNFS------GWFETSAKDNINIDDAAKTLVQKI 626
+ +I++ H F+ ETSA+ N+N+D A TLVQ I
Sbjct: 213 -ERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
+ ++L++G AGKT+I+K+ F+ TI + + +H +L +WD+ G
Sbjct: 1 MLRLLMLGLDNAGKTTILKK-----FNGEDVDTISPTLGFNIKTLEHRGF-KLNIWDVGG 54
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
+ + R Y++ G V D + Q L + L ++ ANK
Sbjct: 55 LKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT---LLIFANK 111
Query: 578 CDQP 581
D P
Sbjct: 112 QDLP 115
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + + + L LWD AGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ--VELALWDTAGQE 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 67 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 121
Query: 579 D 579
D
Sbjct: 122 D 122
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + + + L LWD AGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ--VELALWDTAGQE 67
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 68 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 122
Query: 579 D 579
D
Sbjct: 123 D 123
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + + + L LWD AGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ--VELALWDTAGQE 64
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 65 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 119
Query: 579 D 579
D
Sbjct: 120 D 120
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
+IL++G AGKT+++K+ + S H T G F +K + +L +WDI GQ
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSV---QSQGFKLNVWDIGGQR 59
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
+ R Y++ V D F+ Q+L + + +P ++ ANK D
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFEET---GQELTELLEEEKLSCVPVLIFANKQD 116
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 16/86 (18%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + + ++ ET+ I +WD
Sbjct: 167 RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 215
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFD 540
+ GQ++ + R Y++ G V D
Sbjct: 216 VGGQDKIRPLWRHYFQNTQGLIFVVD 241
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGN 567
I+ +D+ G + + + Y+ E G + D FD + +LDA + +
Sbjct: 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELK 123
Query: 568 PIPCVLLANKCDQP 581
+P V+L NK D P
Sbjct: 124 DVPFVILGNKIDAP 137
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G GAGKT+I+ YR +G V + + ++ ET+ ++ Q+WD
Sbjct: 9 RILILGLDGAGKTTIL-----------YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWD 57
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ G R YY V D + D + K +L A + + V+
Sbjct: 58 LGGLTSIRPYWRCYYSNTDAVIYVVD---SCDRDRIGISKSELVAXLEEEELRKAILVVF 114
Query: 575 ANKCDQPKEGIANNPAKIDEF--IKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
ANK D + ++ A +K+ + F+TSA +D+A + LV+ +
Sbjct: 115 ANKQDXEQAXTSSEXANSLGLPALKDRKWQ-IFKTSATKGTGLDEAXEWLVETL 167
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGN 567
I+ +D+ G + + + Y+ E G + D FD + +LDA + +
Sbjct: 45 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELK 101
Query: 568 PIPCVLLANKCDQP 581
+P V+L NK D P
Sbjct: 102 DVPFVILGNKIDAP 115
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIG-VDFALKVLSWDHETI----IRLQLWD 514
+IL++G AGKT+I+ Y+ +G + + + ++ ET+ I +WD
Sbjct: 4 RILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 52
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ G ++ + R Y++ G V D + + + A+ L D ++
Sbjct: 53 VGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA---VLLVF 109
Query: 575 ANKCDQPKEGIANNPAKIDEFIKEHNF--SGWF 605
ANK D P A N A+I + + H+ W+
Sbjct: 110 ANKQDLPN---AMNAAEITDKLGLHSLRHRNWY 139
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 460 KILVIGELGAGKTSII---------KRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
K++++G+ GKT ++ + YV F +Y A I VD + L
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVD----------GKQVEL 53
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPI 569
LWD AGQE + + + Y + + F + + + + KW ++ K P+ +
Sbjct: 54 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---V 108
Query: 570 PCVLLANKCD 579
P +L+ NK D
Sbjct: 109 PIILVGNKKD 118
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + D + + L LWD AGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQV-ELALWDTAGQE 84
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---VPIILVGNKK 139
Query: 579 D 579
D
Sbjct: 140 D 140
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 460 KILVIGELGAGKTSII---------KRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
K++++G+ GKT ++ + YV F +Y A I VD + L
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVD----------GKQVEL 53
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPI 569
LWD AGQE + + + Y + + F + + + + KW ++ K P+ +
Sbjct: 54 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---V 108
Query: 570 PCVLLANKCD 579
P +L+ NK D
Sbjct: 109 PIILVGNKKD 118
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFS--PHYRATIGVDFALKVLSW------DHETIIRLQ 511
K+ ++G G+GKT+++++ S AT+G+D V W + + L
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGID----VKDWPIQIRDKRKRDLVLN 59
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIP 570
+WD AG+E F + + + V+D+++ A DA W ++ A+ + P
Sbjct: 60 VWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARAS-----SSP 114
Query: 571 CVLLANKCDQPKE 583
+L+ D E
Sbjct: 115 VILVGTHLDVSDE 127
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 460 KILVIGELGAGKTSII---------KRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
K++++G+ GKT ++ + YV F +Y A I VD + L
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVD----------GKQVEL 55
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPI 569
LWD AGQE + + + Y + + F + + + + KW ++ K P+ +
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---V 110
Query: 570 PCVLLANKCD 579
P +L+ NK D
Sbjct: 111 PIILVGNKKD 120
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 460 KILVIGELGAGKTSII---------KRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
K++++G+ GKT ++ + YV F +Y A I VD + L
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVD----------GKQVEL 55
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPI 569
LWD AGQE + + + Y + + F + + + + KW ++ K P+ +
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---V 110
Query: 570 PCVLLANKCD 579
P +L+ NK D
Sbjct: 111 PIILVGNKKD 120
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G+ GKT ++ + F Y T+ ++ + D + + L LWD AGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQV-ELALWDTAGQE 84
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F + + + + KW ++ K P+ +P +L+ NK
Sbjct: 85 DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFXPN---VPIILVGNKK 139
Query: 579 D 579
D
Sbjct: 140 D 140
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 460 KILVIGELGAGKTSII---------KRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
K++++G+ GKT ++ + YV F +Y A I VD + L
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYVADIEVD----------GKQVEL 55
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPI 569
LWD AGQE + + + Y + + F + + + + KW ++ K P+ +
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---V 110
Query: 570 PCVLLANKCD 579
P +L+ NK D
Sbjct: 111 PIILVGNKKD 120
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFS--PHYRATIGVDFALKVLSW------DHETIIRLQ 511
K+ ++G G+GKT+++++ S AT+G+D V W + + L
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGID----VKDWPIQIRDKRKRDLVLN 57
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIP 570
+WD AG+E F + + + V+D+++ A DA W ++ A+ + P
Sbjct: 58 VWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKAR-----ASSSP 112
Query: 571 CVLLANKCDQPKE 583
+L+ D E
Sbjct: 113 VILVGTHLDVSDE 125
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 460 KILVIGELGAGKTSII---------KRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
K++++G+ GKT ++ + YV F +Y A I VD + L
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFE-NYIADIEVDGKQ----------VEL 55
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPI 569
LWD AGQE + + + Y + + F + + + + KW ++ K P+ +
Sbjct: 56 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV--KHFCPN---V 110
Query: 570 PCVLLANKCD 579
P +L+ NK D
Sbjct: 111 PIILVGNKKD 120
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 469 AGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVY 528
AGKT+I+K+ F+ TI + + +H +L +WD+ GQ+ + R Y
Sbjct: 29 AGKTTILKK-----FNGEDVDTISPTLGFNIKTLEHRGF-KLNIWDVGGQKSLRSYWRNY 82
Query: 529 YKEAVGAFIVFD 540
++ G V D
Sbjct: 83 FESTDGLIWVVD 94
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
+IL++G AGKT+++K+ + S H T G F +K + +L +WDI GQ
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSV---QSQGFKLNVWDIGGQR 72
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
+ R Y++ V D F+ Q+L + + +P ++ ANK D
Sbjct: 73 KIRPYWRSYFENTDILIYVIDSADRKRFEET---GQELTELLEEEKLSCVPVLIFANKQD 129
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
+IL++G AGKT+++K+ + S H T G F +K + +L +WDI GQ
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSV---QSQGFKLNVWDIGGQR 71
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
+ R Y++ V D F+ Q+L + + +P ++ ANK D
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFEET---GQELTELLEEEKLSCVPVLIFANKQD 128
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 29/139 (20%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRY-------VHQFFSPH--YRATIGVDFALKVLSWDH 504
+++ ++K++++GE G GK+++ + H+ +P Y I VD
Sbjct: 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVD---------- 68
Query: 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF-IVFDVTRAATFDAVLKWKQDLDAKVTL 563
+ + L ++DI Q G R + + AF IVF VT +F V + + L
Sbjct: 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV------PETLLRL 122
Query: 564 PDGNP---IPCVLLANKCD 579
G P +P +L+ NK D
Sbjct: 123 RAGRPHHDLPVILVGNKSD 141
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 454 KREFLYKILVIGELGAGKTSIIKR-YVHQFFSPHY 487
KR F + ++V+GE G GK+++I ++ +SP Y
Sbjct: 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY 61
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
+IL++G AGKT+++K+ + S H T G F +K + +L +WDI G
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSV---QSQGFKLNVWDIGGLR 59
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579
+ R Y++ V D F+ Q+L + + +P ++ ANK D
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFEET---GQELTELLEEEKLSCVPVLIFANKQD 116
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
Query: 425 SPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFS 484
P+ + + G + GS ++ +K D + V ELG G S+++R VH+
Sbjct: 1 GPHMASMTGGQQMGRGSEFMMNASTKFSDNYD------VKEELGKGAFSVVRRCVHK--- 51
Query: 485 PHYRATIGVDFALKVLS 501
T G++FA K+++
Sbjct: 52 -----TTGLEFAAKIIN 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.126 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,145,489
Number of Sequences: 62578
Number of extensions: 544791
Number of successful extensions: 2005
Number of sequences better than 100.0: 347
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 1422
Number of HSP's gapped (non-prelim): 355
length of query: 663
length of database: 14,973,337
effective HSP length: 105
effective length of query: 558
effective length of database: 8,402,647
effective search space: 4688677026
effective search space used: 4688677026
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)