Query psy4094
Match_columns 663
No_of_seqs 242 out of 1589
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 16:43:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 6.3E-39 1.4E-43 314.9 20.1 202 453-663 4-205 (205)
2 KOG0078|consensus 100.0 3.7E-35 8.1E-40 290.7 22.4 172 454-632 8-179 (207)
3 KOG0092|consensus 100.0 1.2E-35 2.7E-40 290.8 17.7 197 457-663 4-200 (200)
4 KOG0094|consensus 100.0 3.2E-35 6.9E-40 288.7 19.6 171 457-633 21-191 (221)
5 KOG0394|consensus 100.0 5E-35 1.1E-39 285.1 16.5 203 455-663 6-210 (210)
6 KOG0098|consensus 100.0 2.5E-34 5.5E-39 280.7 19.0 173 455-634 3-175 (216)
7 KOG0080|consensus 100.0 5.6E-34 1.2E-38 273.0 18.1 199 455-663 8-209 (209)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.2E-33 1.4E-37 269.0 24.0 199 459-661 1-200 (201)
9 KOG0079|consensus 100.0 5.8E-34 1.3E-38 270.0 14.3 188 454-652 4-191 (198)
10 KOG0087|consensus 100.0 3.9E-33 8.4E-38 276.6 18.5 174 452-632 8-181 (222)
11 cd04121 Rab40 Rab40 subfamily. 100.0 5.5E-32 1.2E-36 264.1 22.6 170 455-632 3-172 (189)
12 cd04120 Rab12 Rab12 subfamily. 100.0 9.5E-32 2.1E-36 265.5 21.7 168 459-632 1-168 (202)
13 KOG0093|consensus 100.0 3.6E-32 7.7E-37 257.6 17.6 175 451-632 14-188 (193)
14 KOG0091|consensus 100.0 8.5E-32 1.8E-36 258.7 17.6 204 454-663 4-213 (213)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3E-31 6.4E-36 257.1 20.7 166 456-628 3-181 (182)
16 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-30 2.9E-35 253.2 23.7 195 456-661 4-198 (199)
17 cd04133 Rop_like Rop subfamily 100.0 6E-31 1.3E-35 254.0 19.8 162 459-627 2-173 (176)
18 KOG0086|consensus 100.0 2.1E-31 4.6E-36 253.8 16.1 175 452-633 3-177 (214)
19 cd04111 Rab39 Rab39 subfamily. 100.0 2.3E-30 5E-35 255.4 23.8 201 458-663 2-211 (211)
20 cd01875 RhoG RhoG subfamily. 100.0 1.6E-30 3.6E-35 251.4 20.9 164 458-628 3-178 (191)
21 cd04131 Rnd Rnd subfamily. Th 100.0 1.3E-30 2.9E-35 250.8 20.1 162 459-627 2-176 (178)
22 cd04144 Ras2 Ras2 subfamily. 100.0 2.9E-30 6.3E-35 248.4 21.5 168 460-632 1-168 (190)
23 cd04122 Rab14 Rab14 subfamily. 100.0 3.7E-30 8.1E-35 240.1 21.2 164 458-628 2-165 (166)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.2E-30 1.1E-34 259.1 23.6 169 456-631 11-192 (232)
25 cd04125 RabA_like RabA-like su 100.0 5.7E-30 1.2E-34 244.7 22.3 187 459-663 1-187 (188)
26 KOG0095|consensus 100.0 8.8E-31 1.9E-35 248.8 14.9 173 454-633 3-175 (213)
27 cd04127 Rab27A Rab27a subfamil 100.0 8.5E-30 1.8E-34 239.7 21.4 169 456-629 2-179 (180)
28 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.8E-30 1.7E-34 242.6 20.9 165 458-629 2-166 (172)
29 cd04109 Rab28 Rab28 subfamily. 100.0 1.3E-29 2.8E-34 249.4 23.1 169 459-630 1-169 (215)
30 PLN03110 Rab GTPase; Provision 100.0 1.9E-29 4.2E-34 249.3 24.1 169 455-630 9-177 (216)
31 PF00071 Ras: Ras family; Int 100.0 1E-29 2.2E-34 234.4 20.3 161 460-627 1-161 (162)
32 cd04116 Rab9 Rab9 subfamily. 100.0 1.4E-29 3.1E-34 236.1 21.4 167 457-626 4-170 (170)
33 cd04132 Rho4_like Rho4-like su 100.0 2.4E-29 5.2E-34 238.9 21.9 168 459-632 1-172 (187)
34 cd01867 Rab8_Rab10_Rab13_like 100.0 2.2E-29 4.8E-34 235.6 21.2 165 457-628 2-166 (167)
35 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.4E-29 3E-34 241.8 19.7 161 459-626 2-174 (175)
36 cd04119 RJL RJL (RabJ-Like) su 100.0 3.4E-29 7.5E-34 229.6 21.3 166 459-627 1-167 (168)
37 KOG0088|consensus 100.0 1.5E-30 3.3E-35 249.1 12.1 171 455-632 10-180 (218)
38 cd04136 Rap_like Rap-like subf 100.0 2.5E-29 5.3E-34 231.0 19.7 161 459-626 2-162 (163)
39 cd04117 Rab15 Rab15 subfamily. 100.0 2.5E-29 5.5E-34 235.1 20.0 160 459-625 1-160 (161)
40 cd04112 Rab26 Rab26 subfamily. 100.0 3.7E-29 8.1E-34 240.9 21.7 167 459-632 1-168 (191)
41 PTZ00369 Ras-like protein; Pro 100.0 3.2E-29 7E-34 240.9 20.9 167 458-631 5-171 (189)
42 cd04126 Rab20 Rab20 subfamily. 100.0 4.5E-29 9.8E-34 250.0 22.2 164 459-632 1-195 (220)
43 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.8E-29 1E-33 250.3 22.2 166 459-631 2-180 (222)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.7E-29 5.9E-34 242.2 19.4 163 459-628 1-167 (182)
45 cd01865 Rab3 Rab3 subfamily. 100.0 6.6E-29 1.4E-33 231.9 21.1 163 459-628 2-164 (165)
46 cd01864 Rab19 Rab19 subfamily. 100.0 5.9E-29 1.3E-33 231.3 20.4 163 457-625 2-164 (165)
47 cd04118 Rab24 Rab24 subfamily. 100.0 1.3E-28 2.7E-33 235.5 22.8 165 459-630 1-169 (193)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.8E-29 1.9E-33 229.9 21.2 164 458-628 2-165 (166)
49 cd01871 Rac1_like Rac1-like su 100.0 1.1E-28 2.3E-33 235.5 19.4 160 459-625 2-173 (174)
50 cd04175 Rap1 Rap1 subgroup. T 100.0 1.9E-28 4.1E-33 227.3 20.2 161 459-626 2-162 (164)
51 cd04176 Rap2 Rap2 subgroup. T 100.0 1.8E-28 3.9E-33 226.8 19.9 161 459-626 2-162 (163)
52 cd01868 Rab11_like Rab11-like. 100.0 2.6E-28 5.5E-33 226.2 20.6 163 457-626 2-164 (165)
53 KOG0081|consensus 100.0 5.2E-30 1.1E-34 245.6 9.4 177 453-634 4-188 (219)
54 PLN03118 Rab family protein; P 100.0 8.2E-28 1.8E-32 235.3 25.1 172 454-632 10-182 (211)
55 PLN03071 GTP-binding nuclear p 100.0 2.1E-28 4.6E-33 243.0 21.2 166 456-631 11-176 (219)
56 cd04106 Rab23_lke Rab23-like s 100.0 2.7E-28 5.8E-33 224.4 20.4 159 459-625 1-161 (162)
57 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 3.1E-28 6.8E-33 231.2 21.3 164 460-628 2-166 (170)
58 cd04134 Rho3 Rho3 subfamily. 100.0 1.8E-28 3.8E-33 236.2 19.2 162 460-628 2-175 (189)
59 cd04113 Rab4 Rab4 subfamily. 100.0 3.5E-28 7.5E-33 224.4 19.7 161 459-626 1-161 (161)
60 cd01866 Rab2 Rab2 subfamily. 100.0 5.9E-28 1.3E-32 226.6 21.5 166 456-628 2-167 (168)
61 smart00173 RAS Ras subfamily o 100.0 5.3E-28 1.1E-32 223.4 20.6 162 459-627 1-162 (164)
62 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.2E-28 1.4E-32 220.0 20.6 160 459-626 2-161 (162)
63 KOG0097|consensus 100.0 2.6E-28 5.7E-33 230.4 18.5 174 452-632 5-178 (215)
64 cd00877 Ran Ran (Ras-related n 100.0 6.2E-28 1.3E-32 227.6 20.3 161 459-629 1-161 (166)
65 PLN03108 Rab family protein; P 100.0 1.8E-27 4E-32 234.0 23.7 169 456-631 4-172 (210)
66 cd04115 Rab33B_Rab33A Rab33B/R 100.0 9.9E-28 2.1E-32 225.5 20.7 163 458-626 2-168 (170)
67 cd04140 ARHI_like ARHI subfami 100.0 1.3E-27 2.8E-32 223.3 20.7 161 459-624 2-162 (165)
68 cd04124 RabL2 RabL2 subfamily. 100.0 1.3E-27 2.9E-32 223.1 20.7 161 459-630 1-161 (161)
69 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.5E-27 3.3E-32 219.4 20.7 162 458-626 2-163 (164)
70 smart00174 RHO Rho (Ras homolo 100.0 7.5E-28 1.6E-32 224.9 18.7 161 461-628 1-173 (174)
71 cd01862 Rab7 Rab7 subfamily. 100.0 2.2E-27 4.8E-32 219.9 21.7 170 459-630 1-170 (172)
72 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.2E-27 4.7E-32 219.3 20.8 161 459-626 1-163 (164)
73 smart00175 RAB Rab subfamily o 100.0 2.6E-27 5.7E-32 217.3 20.9 163 459-628 1-163 (164)
74 cd01892 Miro2 Miro2 subfamily. 100.0 1.1E-27 2.4E-32 226.9 18.3 165 456-628 2-167 (169)
75 smart00176 RAN Ran (Ras-relate 100.0 1.8E-27 3.9E-32 234.7 19.8 158 464-631 1-158 (200)
76 cd04103 Centaurin_gamma Centau 100.0 1.9E-27 4.1E-32 224.3 18.7 156 459-625 1-157 (158)
77 cd01873 RhoBTB RhoBTB subfamil 100.0 1.6E-27 3.5E-32 233.6 18.6 158 459-625 3-194 (195)
78 cd01861 Rab6 Rab6 subfamily. 100.0 5.2E-27 1.1E-31 215.7 20.0 160 459-625 1-160 (161)
79 KOG0083|consensus 100.0 6.1E-29 1.3E-33 232.8 6.8 162 462-630 1-163 (192)
80 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4E-27 8.6E-32 222.0 18.9 159 459-624 1-171 (173)
81 cd04135 Tc10 TC10 subfamily. 100.0 4.8E-27 1E-31 219.4 18.6 162 459-627 1-174 (174)
82 cd01860 Rab5_related Rab5-rela 100.0 1.1E-26 2.5E-31 213.8 20.7 161 459-626 2-162 (163)
83 cd04177 RSR1 RSR1 subgroup. R 99.9 1.2E-26 2.5E-31 217.4 20.6 163 459-627 2-164 (168)
84 cd04142 RRP22 RRP22 subfamily. 99.9 8.5E-27 1.8E-31 228.5 20.1 171 459-632 1-179 (198)
85 cd04143 Rhes_like Rhes_like su 99.9 8.6E-27 1.9E-31 236.9 20.7 165 459-626 1-170 (247)
86 cd04123 Rab21 Rab21 subfamily. 99.9 2.2E-26 4.8E-31 209.8 20.7 161 459-626 1-161 (162)
87 cd04146 RERG_RasL11_like RERG/ 99.9 1.7E-26 3.7E-31 214.8 18.7 162 460-627 1-164 (165)
88 cd04148 RGK RGK subfamily. Th 99.9 2.5E-26 5.3E-31 228.5 20.4 166 459-632 1-168 (221)
89 cd01870 RhoA_like RhoA-like su 99.9 3.4E-26 7.3E-31 213.9 18.9 161 459-626 2-174 (175)
90 cd01863 Rab18 Rab18 subfamily. 99.9 6.8E-26 1.5E-30 208.7 20.1 160 459-625 1-160 (161)
91 cd04114 Rab30 Rab30 subfamily. 99.9 1.1E-25 2.3E-30 209.0 21.3 164 456-626 5-168 (169)
92 KOG0395|consensus 99.9 2.3E-26 5E-31 227.3 17.1 167 458-631 3-169 (196)
93 cd04139 RalA_RalB RalA/RalB su 99.9 2.4E-25 5.3E-30 203.8 20.9 162 459-627 1-162 (164)
94 cd04129 Rho2 Rho2 subfamily. 99.9 1.9E-25 4.2E-30 214.5 20.1 166 459-631 2-177 (187)
95 cd00154 Rab Rab family. Rab G 99.9 2.4E-25 5.3E-30 199.8 19.5 159 459-624 1-159 (159)
96 cd04158 ARD1 ARD1 subfamily. 99.9 2.2E-25 4.7E-30 210.2 18.0 160 460-631 1-165 (169)
97 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 4.6E-25 1E-29 211.5 19.5 168 458-632 3-175 (183)
98 cd04149 Arf6 Arf6 subfamily. 99.9 2.7E-25 5.8E-30 210.8 17.0 155 458-624 9-167 (168)
99 PLN00223 ADP-ribosylation fact 99.9 6.4E-25 1.4E-29 211.4 18.5 161 457-629 16-180 (181)
100 cd04150 Arf1_5_like Arf1-Arf5- 99.9 5.9E-25 1.3E-29 206.0 17.7 154 459-624 1-158 (159)
101 smart00177 ARF ARF-like small 99.9 7.4E-25 1.6E-29 208.7 18.5 157 458-626 13-173 (175)
102 cd00876 Ras Ras family. The R 99.9 1.2E-24 2.6E-29 198.0 18.8 160 460-626 1-160 (160)
103 cd04147 Ras_dva Ras-dva subfam 99.9 1.2E-24 2.6E-29 211.1 19.7 164 460-628 1-164 (198)
104 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.2E-24 2.6E-29 215.5 20.0 165 459-625 1-198 (202)
105 PTZ00132 GTP-binding nuclear p 99.9 2.6E-24 5.6E-29 210.9 21.5 166 456-631 7-172 (215)
106 cd00157 Rho Rho (Ras homology) 99.9 1.4E-24 3.1E-29 200.9 18.6 159 459-624 1-170 (171)
107 KOG0393|consensus 99.9 9.8E-26 2.1E-30 223.5 10.9 168 457-631 3-183 (198)
108 cd04137 RheB Rheb (Ras Homolog 99.9 3.8E-24 8.3E-29 201.8 20.3 165 459-630 2-166 (180)
109 PTZ00133 ADP-ribosylation fact 99.9 2E-24 4.3E-29 207.9 18.6 161 458-630 17-181 (182)
110 cd04154 Arl2 Arl2 subfamily. 99.9 2.5E-24 5.4E-29 203.0 18.2 156 457-624 13-172 (173)
111 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 5.1E-25 1.1E-29 207.7 13.5 152 461-624 2-163 (164)
112 cd04157 Arl6 Arl6 subfamily. 99.9 9.4E-25 2E-29 200.5 14.5 156 460-624 1-161 (162)
113 cd01893 Miro1 Miro1 subfamily. 99.9 5.7E-24 1.2E-28 199.3 18.7 162 459-628 1-165 (166)
114 KOG4252|consensus 99.9 1.8E-25 3.8E-30 217.9 5.8 173 452-632 14-186 (246)
115 PTZ00099 rab6; Provisional 99.9 1.3E-23 2.9E-28 202.9 18.0 144 481-631 3-146 (176)
116 PLN00023 GTP-binding protein; 99.9 1.4E-23 3.1E-28 222.0 19.8 179 456-634 19-237 (334)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.6E-23 5.7E-28 191.4 16.9 153 460-624 1-159 (160)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.8E-23 8.2E-28 191.6 16.9 154 460-624 1-166 (167)
119 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.3E-23 9.4E-28 194.8 17.6 153 460-624 1-166 (167)
120 cd00879 Sar1 Sar1 subfamily. 99.9 5.1E-23 1.1E-27 196.1 18.1 158 457-626 18-190 (190)
121 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 6.8E-23 1.5E-27 194.4 17.6 154 458-624 15-173 (174)
122 cd04151 Arl1 Arl1 subfamily. 99.9 8.6E-23 1.9E-27 189.1 17.1 153 460-624 1-157 (158)
123 cd01890 LepA LepA subfamily. 99.9 2.2E-22 4.8E-27 188.8 18.5 155 460-626 2-176 (179)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2E-22 4.4E-27 185.5 17.5 153 460-624 1-157 (158)
125 cd04159 Arl10_like Arl10-like 99.9 4.9E-22 1.1E-26 178.9 17.8 153 461-624 2-158 (159)
126 COG1100 GTPase SAR1 and relate 99.9 1.3E-21 2.9E-26 189.9 19.8 168 459-631 6-189 (219)
127 smart00178 SAR Sar1p-like memb 99.9 6.3E-22 1.4E-26 190.3 17.3 157 457-625 16-183 (184)
128 TIGR00231 small_GTP small GTP- 99.9 2.1E-21 4.5E-26 172.3 19.0 156 459-622 2-159 (161)
129 KOG4423|consensus 99.9 2.3E-24 5E-29 211.1 -0.7 176 455-630 22-197 (229)
130 TIGR02528 EutP ethanolamine ut 99.9 7.2E-22 1.6E-26 179.6 13.6 135 460-623 2-141 (142)
131 cd01898 Obg Obg subfamily. Th 99.9 5E-21 1.1E-25 177.5 17.8 160 460-625 2-169 (170)
132 cd04155 Arl3 Arl3 subfamily. 99.9 6.4E-21 1.4E-25 178.0 17.7 152 458-624 14-172 (173)
133 cd04171 SelB SelB subfamily. 99.9 3.9E-21 8.5E-26 176.1 15.4 156 460-624 2-163 (164)
134 PF00025 Arf: ADP-ribosylation 99.9 5.3E-21 1.1E-25 183.6 16.6 159 456-626 12-175 (175)
135 cd01897 NOG NOG1 is a nucleola 99.9 1.5E-20 3.3E-25 174.4 18.1 156 460-627 2-168 (168)
136 cd01878 HflX HflX subfamily. 99.8 4.6E-20 1E-24 178.6 16.3 156 457-626 40-204 (204)
137 cd01891 TypA_BipA TypA (tyrosi 99.8 3.6E-20 7.8E-25 179.0 15.3 150 459-618 3-173 (194)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 9.1E-20 2E-24 168.4 17.3 159 460-626 2-165 (168)
139 PRK04213 GTP-binding protein; 99.8 7.3E-20 1.6E-24 176.5 14.4 156 457-630 8-195 (201)
140 cd01879 FeoB Ferrous iron tran 99.8 1.6E-19 3.4E-24 164.9 15.6 148 463-626 1-156 (158)
141 cd00882 Ras_like_GTPase Ras-li 99.8 3.8E-19 8.2E-24 154.9 16.7 156 463-624 1-157 (157)
142 KOG0073|consensus 99.8 7.8E-19 1.7E-23 169.5 17.4 165 455-629 13-180 (185)
143 cd00881 GTP_translation_factor 99.8 1E-18 2.2E-23 163.6 16.4 156 460-626 1-186 (189)
144 TIGR01393 lepA GTP-binding pro 99.8 1.6E-18 3.4E-23 196.6 19.1 159 458-628 3-181 (595)
145 PRK12299 obgE GTPase CgtA; Rev 99.8 2.8E-18 6E-23 182.5 19.8 166 458-629 158-330 (335)
146 cd01889 SelB_euk SelB subfamil 99.8 1.2E-18 2.6E-23 168.1 15.2 162 459-628 1-187 (192)
147 PRK03003 GTP-binding protein D 99.8 2.4E-18 5.1E-23 189.7 17.4 163 458-631 211-386 (472)
148 PF08477 Miro: Miro-like prote 99.8 7.9E-19 1.7E-23 155.1 11.0 114 460-579 1-119 (119)
149 KOG1673|consensus 99.8 5.3E-19 1.1E-23 169.7 10.1 167 456-629 18-188 (205)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.8 7.5E-18 1.6E-22 152.6 17.1 146 459-626 2-156 (157)
151 cd01894 EngA1 EngA1 subfamily. 99.8 3.8E-18 8.2E-23 154.9 15.2 148 462-626 1-157 (157)
152 cd01895 EngA2 EngA2 subfamily. 99.8 1.5E-17 3.2E-22 152.3 18.1 156 458-625 2-173 (174)
153 TIGR03156 GTP_HflX GTP-binding 99.8 5.6E-18 1.2E-22 181.0 17.6 154 457-625 188-350 (351)
154 KOG0096|consensus 99.8 5.1E-19 1.1E-23 174.1 8.6 165 457-631 9-173 (216)
155 cd01881 Obg_like The Obg-like 99.8 5E-18 1.1E-22 157.6 14.2 159 463-625 1-175 (176)
156 PRK03003 GTP-binding protein D 99.8 9.8E-18 2.1E-22 184.8 18.9 153 459-628 39-200 (472)
157 TIGR00436 era GTP-binding prot 99.8 8.1E-18 1.7E-22 172.3 16.9 157 460-630 2-167 (270)
158 KOG0070|consensus 99.8 4.9E-18 1.1E-22 166.2 14.0 161 457-629 16-180 (181)
159 TIGR03594 GTPase_EngA ribosome 99.8 9.4E-18 2E-22 180.8 17.1 161 457-630 171-347 (429)
160 TIGR02729 Obg_CgtA Obg family 99.8 1.8E-17 3.8E-22 175.8 18.5 162 458-626 157-328 (329)
161 PRK15467 ethanolamine utilizat 99.8 1E-17 2.2E-22 158.6 14.4 141 460-628 3-148 (158)
162 cd04163 Era Era subfamily. Er 99.8 3.6E-17 7.7E-22 147.8 17.2 158 458-626 3-168 (168)
163 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.7E-17 5.9E-22 180.7 18.9 153 457-630 202-363 (442)
164 TIGR00487 IF-2 translation ini 99.8 2.8E-17 6.2E-22 186.1 19.5 152 459-624 88-247 (587)
165 PRK05433 GTP-binding protein L 99.7 3.9E-17 8.5E-22 185.4 18.7 160 457-628 6-185 (600)
166 PRK15494 era GTPase Era; Provi 99.7 3.8E-17 8.3E-22 173.5 17.1 160 456-631 50-220 (339)
167 PRK00454 engB GTP-binding prot 99.7 6.3E-17 1.4E-21 154.4 16.2 159 456-627 22-194 (196)
168 KOG0075|consensus 99.7 1.6E-17 3.4E-22 158.4 11.8 157 458-628 20-183 (186)
169 PF00009 GTP_EFTU: Elongation 99.7 2.3E-17 5E-22 159.2 13.1 162 457-627 2-187 (188)
170 PRK05306 infB translation init 99.7 9.4E-17 2E-21 186.6 19.4 154 457-625 289-450 (787)
171 PRK05291 trmE tRNA modificatio 99.7 6.7E-17 1.5E-21 177.7 16.8 148 458-628 215-371 (449)
172 CHL00189 infB translation init 99.7 1E-16 2.2E-21 185.1 18.8 156 458-626 244-409 (742)
173 cd01888 eIF2_gamma eIF2-gamma 99.7 5.7E-17 1.2E-21 159.2 13.8 159 459-627 1-199 (203)
174 PRK00093 GTP-binding protein D 99.7 1.5E-16 3.2E-21 172.2 17.7 148 459-625 2-160 (435)
175 TIGR00475 selB selenocysteine- 99.7 9.7E-17 2.1E-21 181.6 17.0 159 459-628 1-167 (581)
176 PRK11058 GTPase HflX; Provisio 99.7 1.9E-16 4.1E-21 173.4 18.6 159 459-629 198-364 (426)
177 cd00880 Era_like Era (E. coli 99.7 1.6E-16 3.6E-21 140.8 14.8 151 463-626 1-163 (163)
178 TIGR03598 GTPase_YsxC ribosome 99.7 9.1E-17 2E-21 153.5 14.0 150 455-616 15-179 (179)
179 cd04105 SR_beta Signal recogni 99.7 1.6E-16 3.5E-21 156.6 16.1 121 460-583 2-124 (203)
180 PRK12297 obgE GTPase CgtA; Rev 99.7 3.7E-16 7.9E-21 171.1 20.0 164 458-631 158-331 (424)
181 PRK00093 GTP-binding protein D 99.7 3.3E-16 7.1E-21 169.5 17.1 162 458-630 173-347 (435)
182 TIGR03594 GTPase_EngA ribosome 99.7 3.8E-16 8.3E-21 168.3 17.4 152 460-628 1-161 (429)
183 PRK00089 era GTPase Era; Revie 99.7 3.2E-16 6.9E-21 161.3 15.9 160 459-630 6-174 (292)
184 KOG3883|consensus 99.7 8.2E-16 1.8E-20 147.6 16.3 167 457-629 8-177 (198)
185 PRK09518 bifunctional cytidyla 99.7 5.1E-16 1.1E-20 179.2 17.7 159 458-630 450-624 (712)
186 PRK10218 GTP-binding protein; 99.7 7.6E-16 1.6E-20 175.1 18.7 164 457-629 4-197 (607)
187 cd01876 YihA_EngB The YihA (En 99.7 5.5E-16 1.2E-20 140.7 14.0 152 460-625 1-169 (170)
188 TIGR00483 EF-1_alpha translati 99.7 1.9E-16 4E-21 172.3 12.4 155 456-619 5-199 (426)
189 KOG0071|consensus 99.7 5.2E-16 1.1E-20 147.2 13.7 157 458-626 17-177 (180)
190 PRK12296 obgE GTPase CgtA; Rev 99.7 1.6E-15 3.5E-20 168.8 18.4 168 458-631 159-344 (500)
191 TIGR01394 TypA_BipA GTP-bindin 99.7 1.3E-15 2.8E-20 172.9 16.9 159 459-628 2-192 (594)
192 TIGR00491 aIF-2 translation in 99.7 2E-15 4.3E-20 171.2 18.1 158 460-625 6-214 (590)
193 cd04167 Snu114p Snu114p subfam 99.7 1.3E-15 2.7E-20 150.3 14.1 158 460-625 2-209 (213)
194 PF02421 FeoB_N: Ferrous iron 99.7 5.6E-16 1.2E-20 149.2 11.3 148 459-622 1-156 (156)
195 KOG0462|consensus 99.7 7.4E-16 1.6E-20 170.1 13.6 164 456-628 58-236 (650)
196 PRK09518 bifunctional cytidyla 99.6 4.8E-15 1E-19 171.2 20.4 154 458-628 275-437 (712)
197 PRK12317 elongation factor 1-a 99.6 8.8E-16 1.9E-20 166.8 13.5 156 456-620 4-198 (425)
198 PRK12298 obgE GTPase CgtA; Rev 99.6 4.8E-15 1E-19 160.8 18.7 168 458-631 159-337 (390)
199 TIGR00437 feoB ferrous iron tr 99.6 2.2E-15 4.7E-20 171.1 16.6 146 465-626 1-154 (591)
200 cd01896 DRG The developmentall 99.6 6.2E-15 1.3E-19 148.9 17.7 155 460-626 2-225 (233)
201 cd04166 CysN_ATPS CysN_ATPS su 99.6 2.3E-15 5E-20 148.4 13.0 149 460-618 1-185 (208)
202 KOG0076|consensus 99.6 6.1E-16 1.3E-20 150.8 8.5 162 457-629 16-189 (197)
203 PRK10512 selenocysteinyl-tRNA- 99.6 6.5E-15 1.4E-19 167.8 17.3 158 460-627 2-166 (614)
204 cd01883 EF1_alpha Eukaryotic e 99.6 2.1E-15 4.6E-20 150.0 11.7 147 460-616 1-194 (219)
205 cd01885 EF2 EF2 (for archaea a 99.6 2.3E-14 5E-19 144.6 16.5 114 460-581 2-138 (222)
206 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.9E-14 4.2E-19 142.0 14.8 147 459-616 3-172 (195)
207 TIGR03680 eif2g_arch translati 99.6 1.1E-14 2.4E-19 158.1 14.1 165 457-627 3-196 (406)
208 PLN00043 elongation factor 1-a 99.6 3.1E-15 6.7E-20 164.7 9.5 158 456-617 5-203 (447)
209 PRK04000 translation initiatio 99.6 2E-14 4.4E-19 156.5 15.4 166 455-627 6-201 (411)
210 COG2229 Predicted GTPase [Gene 99.6 6.7E-14 1.4E-18 137.6 17.1 156 456-625 8-176 (187)
211 PRK09554 feoB ferrous iron tra 99.6 4.6E-14 9.9E-19 164.5 18.7 153 458-626 3-167 (772)
212 cd04168 TetM_like Tet(M)-like 99.6 5.2E-14 1.1E-18 142.8 16.7 112 460-582 1-130 (237)
213 PRK04004 translation initiatio 99.6 3.4E-14 7.4E-19 161.2 16.0 155 459-625 7-216 (586)
214 KOG0074|consensus 99.6 1.9E-14 4.1E-19 136.9 10.5 159 456-625 15-177 (185)
215 PRK12736 elongation factor Tu; 99.5 8.5E-14 1.8E-18 150.7 16.0 162 455-627 9-201 (394)
216 TIGR00485 EF-Tu translation el 99.5 7.8E-14 1.7E-18 150.7 14.6 148 455-613 9-179 (394)
217 PRK12735 elongation factor Tu; 99.5 1.1E-13 2.4E-18 149.8 15.6 161 455-626 9-202 (396)
218 KOG1707|consensus 99.5 3.1E-14 6.7E-19 158.5 10.7 166 457-627 8-175 (625)
219 PRK13351 elongation factor G; 99.5 1.5E-13 3.3E-18 158.1 15.2 117 456-583 6-140 (687)
220 cd04165 GTPBP1_like GTPBP1-lik 99.5 2E-13 4.4E-18 137.5 14.3 153 460-623 1-219 (224)
221 COG1160 Predicted GTPases [Gen 99.5 3.6E-13 7.8E-18 147.3 16.1 150 459-627 4-165 (444)
222 COG1159 Era GTPase [General fu 99.5 3.9E-13 8.6E-18 140.6 14.8 161 458-630 6-175 (298)
223 TIGR02034 CysN sulfate adenyly 99.5 1.7E-13 3.8E-18 148.9 12.6 149 459-617 1-187 (406)
224 CHL00071 tufA elongation facto 99.5 5.7E-13 1.2E-17 144.9 16.2 150 455-615 9-181 (409)
225 PF10662 PduV-EutP: Ethanolami 99.5 4.3E-13 9.3E-18 127.8 13.0 136 460-623 3-142 (143)
226 PLN03126 Elongation factor Tu; 99.5 5.6E-13 1.2E-17 148.2 16.1 150 455-615 78-250 (478)
227 PTZ00141 elongation factor 1- 99.5 5.2E-13 1.1E-17 147.2 15.3 151 456-617 5-203 (446)
228 cd01886 EF-G Elongation factor 99.5 5.7E-13 1.2E-17 137.9 14.6 141 460-611 1-159 (270)
229 COG0481 LepA Membrane GTPase L 99.5 2.4E-13 5.2E-18 148.7 12.1 165 455-630 6-189 (603)
230 COG1160 Predicted GTPases [Gen 99.4 1.2E-12 2.6E-17 143.2 15.9 162 457-629 177-353 (444)
231 PRK00741 prfC peptide chain re 99.4 2.1E-12 4.5E-17 145.2 18.2 115 457-582 9-145 (526)
232 cd04104 p47_IIGP_like p47 (47- 99.4 2.4E-12 5.1E-17 126.1 15.5 161 459-632 2-189 (197)
233 cd04169 RF3 RF3 subfamily. Pe 99.4 3.2E-12 7E-17 132.1 17.3 115 459-584 3-139 (267)
234 PRK05124 cysN sulfate adenylyl 99.4 6.6E-13 1.4E-17 147.4 12.7 153 456-618 25-216 (474)
235 cd04170 EF-G_bact Elongation f 99.4 1.5E-12 3.2E-17 133.2 13.5 153 460-626 1-172 (268)
236 KOG3905|consensus 99.4 4.9E-13 1.1E-17 141.0 10.2 167 460-630 54-293 (473)
237 PRK00049 elongation factor Tu; 99.4 2.5E-12 5.5E-17 139.5 15.7 159 456-625 10-201 (396)
238 KOG0072|consensus 99.4 3.8E-13 8.2E-18 128.4 7.9 160 457-629 17-181 (182)
239 PLN03127 Elongation factor Tu; 99.4 3.3E-12 7.2E-17 141.0 16.1 161 456-627 59-252 (447)
240 PRK05506 bifunctional sulfate 99.4 1.5E-12 3.4E-17 148.6 13.9 151 457-617 23-211 (632)
241 TIGR00484 EF-G translation elo 99.4 2.4E-12 5.3E-17 148.4 14.9 143 456-612 8-171 (689)
242 COG1217 TypA Predicted membran 99.4 3.5E-12 7.5E-17 139.5 14.2 161 458-629 5-197 (603)
243 COG0532 InfB Translation initi 99.4 6.2E-12 1.3E-16 139.6 16.2 157 459-627 6-170 (509)
244 cd01899 Ygr210 Ygr210 subfamil 99.4 1E-11 2.2E-16 131.8 16.3 167 461-632 1-274 (318)
245 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 4.7E-12 1E-16 129.2 11.9 171 460-635 1-184 (232)
246 cd01850 CDC_Septin CDC/Septin. 99.3 8.3E-12 1.8E-16 129.7 12.9 143 457-610 3-185 (276)
247 KOG1423|consensus 99.3 2.2E-11 4.9E-16 128.0 15.7 168 454-630 68-274 (379)
248 COG0486 ThdF Predicted GTPase 99.3 2.4E-11 5.2E-16 133.4 16.5 152 458-629 217-378 (454)
249 TIGR00503 prfC peptide chain r 99.3 3.5E-12 7.5E-17 143.4 9.8 119 456-583 9-147 (527)
250 PF05783 DLIC: Dynein light in 99.3 1.3E-11 2.9E-16 137.1 13.8 168 459-630 26-267 (472)
251 PTZ00327 eukaryotic translatio 99.3 1.5E-11 3.2E-16 136.4 13.9 165 456-627 32-233 (460)
252 PRK12740 elongation factor G; 99.3 1.2E-11 2.7E-16 141.8 13.7 108 464-582 1-126 (668)
253 PRK12739 elongation factor G; 99.3 1.8E-11 3.9E-16 141.4 14.6 118 456-584 6-141 (691)
254 COG5256 TEF1 Translation elong 99.3 5.2E-12 1.1E-16 136.9 8.4 155 456-618 5-202 (428)
255 KOG1145|consensus 99.3 9.8E-11 2.1E-15 130.2 17.0 159 460-631 155-320 (683)
256 PF09439 SRPRB: Signal recogni 99.3 2.4E-11 5.2E-16 119.9 11.1 120 460-584 5-128 (181)
257 TIGR00490 aEF-2 translation el 99.3 3.7E-11 8.1E-16 139.5 14.2 126 455-589 16-159 (720)
258 smart00010 small_GTPase Small 99.3 3E-11 6.4E-16 106.4 9.7 114 459-616 1-115 (124)
259 PRK00007 elongation factor G; 99.2 6.3E-11 1.4E-15 137.1 14.2 143 456-612 8-171 (693)
260 PRK09602 translation-associate 99.2 2.1E-10 4.5E-15 125.2 16.6 84 459-542 2-113 (396)
261 COG0370 FeoB Fe2+ transport sy 99.2 1.1E-10 2.3E-15 132.9 14.9 154 459-628 4-165 (653)
262 KOG1489|consensus 99.2 1.6E-10 3.5E-15 122.1 15.1 158 459-624 197-364 (366)
263 PF01926 MMR_HSR1: 50S ribosom 99.2 2.4E-10 5.2E-15 101.8 13.3 106 460-577 1-116 (116)
264 cd00066 G-alpha G protein alph 99.2 3E-10 6.4E-15 120.2 15.5 123 508-630 161-314 (317)
265 COG0218 Predicted GTPase [Gene 99.2 4.3E-10 9.2E-15 112.5 15.4 155 458-628 24-198 (200)
266 KOG0077|consensus 99.2 5E-11 1.1E-15 116.2 8.1 155 459-625 21-191 (193)
267 COG2262 HflX GTPases [General 99.2 4.9E-10 1.1E-14 121.7 16.5 162 457-631 191-360 (411)
268 PRK07560 elongation factor EF- 99.2 3E-10 6.4E-15 132.3 15.0 120 455-583 17-154 (731)
269 KOG0458|consensus 99.1 2.7E-10 5.8E-15 127.5 12.8 155 454-618 173-373 (603)
270 PRK14845 translation initiatio 99.1 6.7E-10 1.5E-14 133.0 15.7 149 469-625 472-671 (1049)
271 smart00275 G_alpha G protein a 99.1 1.7E-09 3.7E-14 115.9 16.6 123 508-630 184-337 (342)
272 COG1084 Predicted GTPase [Gene 99.1 2.8E-09 6E-14 113.3 17.3 160 457-628 167-337 (346)
273 TIGR00157 ribosome small subun 99.1 2.6E-10 5.7E-15 116.6 8.5 96 519-624 24-120 (245)
274 COG0536 Obg Predicted GTPase [ 99.1 1.4E-09 3.1E-14 115.9 14.3 168 458-630 159-336 (369)
275 PLN00116 translation elongatio 99.1 9.9E-10 2.1E-14 129.8 14.1 120 454-581 15-163 (843)
276 COG2895 CysN GTPases - Sulfate 99.0 6.8E-10 1.5E-14 118.8 10.2 151 456-617 4-193 (431)
277 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 5.4E-09 1.2E-13 102.0 15.1 162 459-628 1-185 (196)
278 COG1163 DRG Predicted GTPase [ 99.0 3.7E-09 8E-14 112.3 14.7 162 457-630 62-292 (365)
279 PTZ00416 elongation factor 2; 99.0 2.8E-09 6.1E-14 125.9 14.5 119 455-581 16-157 (836)
280 PRK13768 GTPase; Provisional 99.0 3.1E-09 6.7E-14 109.1 12.9 112 509-628 98-248 (253)
281 TIGR00101 ureG urease accessor 99.0 6.2E-09 1.3E-13 103.4 14.3 104 508-627 92-196 (199)
282 PRK09866 hypothetical protein; 99.0 1.1E-08 2.4E-13 116.9 17.2 109 509-624 231-350 (741)
283 COG3596 Predicted GTPase [Gene 99.0 5.5E-09 1.2E-13 109.0 12.9 167 456-631 37-226 (296)
284 KOG0090|consensus 99.0 5.9E-09 1.3E-13 105.4 12.3 155 460-625 40-237 (238)
285 KOG1191|consensus 99.0 5.4E-09 1.2E-13 115.6 13.1 170 458-631 268-454 (531)
286 COG4917 EutP Ethanolamine util 98.9 4.6E-09 1E-13 98.8 10.4 137 460-624 3-143 (148)
287 KOG1707|consensus 98.9 9.7E-09 2.1E-13 115.3 13.9 164 454-628 421-584 (625)
288 COG0480 FusA Translation elong 98.9 7.9E-09 1.7E-13 119.8 13.5 132 455-596 7-156 (697)
289 TIGR00073 hypB hydrogenase acc 98.9 1E-08 2.2E-13 101.5 10.6 56 569-625 149-205 (207)
290 KOG0705|consensus 98.9 5.6E-09 1.2E-13 116.3 9.0 165 459-634 31-196 (749)
291 KOG0082|consensus 98.8 6.5E-08 1.4E-12 104.3 15.7 124 508-631 195-348 (354)
292 KOG1532|consensus 98.8 1.2E-08 2.6E-13 106.6 9.5 120 508-630 116-267 (366)
293 cd01882 BMS1 Bms1. Bms1 is an 98.8 6.5E-08 1.4E-12 97.5 13.7 138 459-613 40-182 (225)
294 PF03029 ATP_bind_1: Conserved 98.8 5.9E-10 1.3E-14 113.9 -1.4 114 509-626 92-236 (238)
295 KOG1144|consensus 98.8 2.8E-08 6.1E-13 113.6 11.4 158 459-630 476-690 (1064)
296 PTZ00258 GTP-binding protein; 98.7 1.3E-07 2.8E-12 103.4 14.8 87 456-542 19-126 (390)
297 COG5257 GCD11 Translation init 98.7 2.4E-08 5.3E-13 106.1 8.1 169 457-631 9-206 (415)
298 KOG0461|consensus 98.7 1.9E-07 4.1E-12 100.1 14.7 159 458-628 7-194 (522)
299 KOG1490|consensus 98.7 1.1E-07 2.4E-12 105.6 11.8 169 458-634 168-348 (620)
300 KOG3886|consensus 98.7 1.9E-08 4.2E-13 102.9 4.9 149 459-611 5-163 (295)
301 PRK09435 membrane ATPase/prote 98.7 4.3E-07 9.4E-12 97.5 15.2 105 508-627 149-260 (332)
302 TIGR00991 3a0901s02IAP34 GTP-b 98.7 5.1E-07 1.1E-11 96.2 15.5 121 456-581 36-166 (313)
303 cd01853 Toc34_like Toc34-like 98.6 3.9E-07 8.5E-12 93.9 13.8 120 456-581 29-162 (249)
304 COG0050 TufB GTPases - transla 98.6 1.8E-07 3.8E-12 98.8 11.3 145 456-611 10-177 (394)
305 COG3276 SelB Selenocysteine-sp 98.6 2.6E-07 5.6E-12 101.5 13.1 156 460-627 2-162 (447)
306 KOG0468|consensus 98.6 2.6E-07 5.5E-12 105.1 11.0 120 453-580 123-261 (971)
307 PF00503 G-alpha: G-protein al 98.6 2.8E-07 6.1E-12 99.8 10.8 119 508-626 236-389 (389)
308 PF04548 AIG1: AIG1 family; I 98.6 5.8E-07 1.3E-11 89.7 12.0 164 459-630 1-189 (212)
309 cd01855 YqeH YqeH. YqeH is an 98.5 3.3E-07 7.2E-12 88.9 9.6 95 521-627 24-125 (190)
310 TIGR00750 lao LAO/AO transport 98.5 1.6E-06 3.6E-11 91.0 15.0 102 508-627 127-238 (300)
311 PF00350 Dynamin_N: Dynamin fa 98.5 1.6E-06 3.6E-11 81.3 12.2 63 509-578 102-168 (168)
312 cd01859 MJ1464 MJ1464. This f 98.5 6.9E-07 1.5E-11 83.8 9.5 96 521-628 2-97 (156)
313 PRK09601 GTP-binding protein Y 98.4 2.9E-06 6.4E-11 92.2 14.6 84 459-542 3-107 (364)
314 PF05049 IIGP: Interferon-indu 98.4 7.1E-07 1.5E-11 97.3 9.4 162 457-631 34-222 (376)
315 PRK10463 hydrogenase nickel in 98.4 9.1E-07 2E-11 93.5 9.8 56 569-625 231-287 (290)
316 COG0378 HypB Ni2+-binding GTPa 98.4 2E-06 4.2E-11 86.4 10.8 54 572-626 146-200 (202)
317 TIGR02836 spore_IV_A stage IV 98.4 9.7E-06 2.1E-10 89.6 16.2 155 457-623 16-233 (492)
318 PF00735 Septin: Septin; Inte 98.4 7.2E-06 1.6E-10 86.2 14.5 134 458-601 4-176 (281)
319 PRK12289 GTPase RsgA; Reviewed 98.3 1.8E-06 3.9E-11 93.4 9.5 96 520-626 78-174 (352)
320 TIGR03597 GTPase_YqeH ribosome 98.3 2.4E-06 5.2E-11 92.3 9.6 96 518-625 50-151 (360)
321 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.5E-06 5.5E-11 89.3 8.9 88 526-624 73-161 (287)
322 PRK00098 GTPase RsgA; Reviewed 98.3 1.4E-06 3E-11 91.7 6.8 86 528-623 77-163 (298)
323 KOG1486|consensus 98.3 1.5E-05 3.2E-10 83.1 13.9 161 459-631 63-292 (364)
324 PRK12288 GTPase RsgA; Reviewed 98.3 3E-06 6.6E-11 91.4 9.3 90 528-625 117-206 (347)
325 COG4108 PrfC Peptide chain rel 98.2 8.1E-06 1.7E-10 90.1 11.9 114 458-582 12-147 (528)
326 KOG0467|consensus 98.2 4.4E-06 9.6E-11 96.5 10.2 114 455-579 6-135 (887)
327 smart00053 DYNc Dynamin, GTPas 98.2 1.6E-05 3.4E-10 82.1 13.1 69 508-583 125-207 (240)
328 COG5258 GTPBP1 GTPase [General 98.2 8.4E-06 1.8E-10 88.8 10.4 164 457-629 116-340 (527)
329 TIGR00993 3a0901s04IAP86 chlor 98.1 2E-05 4.4E-10 91.1 13.1 122 456-582 116-250 (763)
330 KOG3887|consensus 98.1 1.4E-05 3E-10 82.9 10.7 165 460-632 29-207 (347)
331 KOG0099|consensus 98.1 8.9E-06 1.9E-10 85.0 8.8 73 508-580 202-281 (379)
332 KOG0464|consensus 98.1 2.3E-06 4.9E-11 93.6 3.3 131 455-596 34-182 (753)
333 PF03308 ArgK: ArgK protein; 98.0 9.3E-06 2E-10 84.8 7.3 150 458-626 29-229 (266)
334 KOG0460|consensus 98.0 1.7E-05 3.7E-10 85.4 8.7 146 455-610 51-218 (449)
335 cd01900 YchF YchF subfamily. 97.9 2.1E-05 4.5E-10 82.6 7.7 82 461-542 1-103 (274)
336 COG0012 Predicted GTPase, prob 97.9 0.00011 2.5E-09 79.9 13.4 84 459-542 3-108 (372)
337 COG5019 CDC3 Septin family pro 97.9 7.5E-05 1.6E-09 81.1 11.5 115 457-581 22-175 (373)
338 cd01858 NGP_1 NGP-1. Autoanti 97.9 5.3E-05 1.1E-09 71.6 9.0 88 528-626 5-94 (157)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 2.9E-05 6.4E-10 72.3 6.5 54 460-518 85-138 (141)
340 KOG0410|consensus 97.9 3.6E-05 7.9E-10 82.5 7.8 156 460-630 180-344 (410)
341 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 5.8E-05 1.3E-09 70.3 7.8 77 526-614 6-84 (141)
342 cd01849 YlqF_related_GTPase Yl 97.7 0.00014 2.9E-09 68.8 8.9 84 533-627 1-85 (155)
343 COG1703 ArgK Putative periplas 97.7 0.00026 5.7E-09 75.4 11.8 107 508-629 144-256 (323)
344 KOG1547|consensus 97.7 0.00036 7.9E-09 72.6 12.0 141 457-609 45-225 (336)
345 KOG2655|consensus 97.7 0.00047 1E-08 75.2 13.5 115 457-581 20-171 (366)
346 cd01856 YlqF YlqF. Proteins o 97.7 0.00012 2.5E-09 70.4 7.8 98 516-627 3-101 (171)
347 KOG0085|consensus 97.7 6.7E-05 1.4E-09 77.6 6.2 124 507-630 198-352 (359)
348 cd01859 MJ1464 MJ1464. This f 97.7 0.00011 2.3E-09 69.1 7.1 55 458-517 101-155 (156)
349 cd01856 YlqF YlqF. Proteins o 97.6 0.00012 2.5E-09 70.4 7.1 56 457-518 114-170 (171)
350 KOG1954|consensus 97.6 0.00059 1.3E-08 74.5 12.4 116 460-582 60-225 (532)
351 KOG1143|consensus 97.6 0.00021 4.6E-09 77.9 8.7 155 457-619 166-380 (591)
352 TIGR03596 GTPase_YlqF ribosome 97.6 0.00033 7.2E-09 72.9 9.6 101 515-629 4-105 (276)
353 PRK13796 GTPase YqeH; Provisio 97.6 0.00041 8.9E-09 75.4 10.5 93 520-625 58-157 (365)
354 KOG0466|consensus 97.5 4.6E-05 1E-09 81.2 2.6 167 455-631 35-245 (466)
355 KOG0465|consensus 97.5 0.00013 2.8E-09 83.2 5.9 117 457-584 38-172 (721)
356 KOG2486|consensus 97.5 0.00016 3.5E-09 76.3 6.1 157 455-625 133-314 (320)
357 TIGR03348 VI_IcmF type VI secr 97.5 0.00061 1.3E-08 84.0 11.7 113 460-582 113-257 (1169)
358 KOG0459|consensus 97.4 9.1E-05 2E-09 81.3 3.2 160 455-620 76-279 (501)
359 PRK10416 signal recognition pa 97.4 0.0012 2.5E-08 70.9 11.2 95 508-620 197-303 (318)
360 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.00044 9.5E-09 65.3 7.1 54 458-517 102-156 (157)
361 KOG0463|consensus 97.4 0.00033 7.2E-09 76.4 6.8 164 457-631 132-361 (641)
362 KOG1487|consensus 97.4 0.00054 1.2E-08 72.0 8.1 163 459-634 60-288 (358)
363 PRK09563 rbgA GTPase YlqF; Rev 97.3 0.00076 1.6E-08 70.7 9.0 101 515-629 7-108 (287)
364 TIGR03596 GTPase_YlqF ribosome 97.3 0.0007 1.5E-08 70.5 8.6 55 458-518 118-173 (276)
365 cd04178 Nucleostemin_like Nucl 97.3 0.00045 9.7E-09 67.6 6.7 55 457-517 116-171 (172)
366 PRK14974 cell division protein 97.3 0.00082 1.8E-08 72.7 9.2 96 508-621 223-324 (336)
367 KOG0469|consensus 97.3 0.00049 1.1E-08 77.3 7.4 134 455-597 16-179 (842)
368 PRK01889 GTPase RsgA; Reviewed 97.2 0.0017 3.7E-08 70.5 10.6 85 528-623 109-193 (356)
369 PRK09563 rbgA GTPase YlqF; Rev 97.2 0.00077 1.7E-08 70.7 7.5 56 458-519 121-177 (287)
370 cd01855 YqeH YqeH. YqeH is an 97.2 0.00058 1.2E-08 66.4 6.0 53 459-517 128-189 (190)
371 TIGR00064 ftsY signal recognit 97.2 0.0048 1E-07 64.7 12.7 98 508-623 155-264 (272)
372 cd03112 CobW_like The function 97.2 0.0019 4.2E-08 61.9 8.9 63 508-580 87-158 (158)
373 TIGR00092 GTP-binding protein 97.1 0.0018 3.9E-08 71.0 9.3 84 459-542 3-108 (368)
374 KOG0448|consensus 97.1 0.0072 1.6E-07 70.3 14.4 67 509-583 207-276 (749)
375 KOG4273|consensus 97.1 0.0021 4.6E-08 67.3 9.2 163 460-631 6-226 (418)
376 TIGR01425 SRP54_euk signal rec 97.1 0.005 1.1E-07 68.8 12.6 114 459-582 101-253 (429)
377 KOG0447|consensus 97.0 0.0081 1.8E-07 68.4 13.2 93 499-598 403-508 (980)
378 cd01851 GBP Guanylate-binding 97.0 0.0072 1.6E-07 61.4 11.9 85 457-543 6-103 (224)
379 cd03110 Fer4_NifH_child This p 96.9 0.022 4.7E-07 54.8 13.7 84 507-605 92-175 (179)
380 PRK13695 putative NTPase; Prov 96.9 0.012 2.5E-07 56.7 11.8 79 528-626 93-172 (174)
381 cd01849 YlqF_related_GTPase Yl 96.9 0.0022 4.8E-08 60.6 6.6 54 458-517 100-154 (155)
382 PF03193 DUF258: Protein of un 96.9 0.00097 2.1E-08 65.4 4.1 58 460-521 37-100 (161)
383 COG1161 Predicted GTPases [Gen 96.9 0.0019 4E-08 69.3 6.5 56 458-519 132-188 (322)
384 KOG1491|consensus 96.8 0.0053 1.2E-07 66.7 9.2 86 457-542 19-125 (391)
385 PRK12727 flagellar biosynthesi 96.7 0.021 4.6E-07 65.6 13.9 137 459-615 351-523 (559)
386 cd03115 SRP The signal recogni 96.7 0.025 5.4E-07 54.1 12.4 79 508-601 83-167 (173)
387 COG5192 BMS1 GTP-binding prote 96.6 0.029 6.2E-07 64.3 13.8 140 454-612 65-211 (1077)
388 PRK00771 signal recognition pa 96.6 0.0087 1.9E-07 67.0 9.5 85 508-609 176-267 (437)
389 cd03114 ArgK-like The function 96.6 0.014 3E-07 55.8 9.4 57 508-579 92-148 (148)
390 PRK12288 GTPase RsgA; Reviewed 96.5 0.0038 8.2E-08 67.8 6.0 58 461-522 208-271 (347)
391 cd02042 ParA ParA and ParB of 96.5 0.015 3.2E-07 51.0 8.6 82 461-555 2-84 (104)
392 KOG3859|consensus 96.5 0.01 2.2E-07 63.3 8.5 113 457-580 41-188 (406)
393 PRK10867 signal recognition pa 96.5 0.025 5.5E-07 63.3 12.1 86 508-609 184-275 (433)
394 TIGR00959 ffh signal recogniti 96.4 0.012 2.6E-07 65.8 9.1 92 508-617 183-280 (428)
395 PRK14722 flhF flagellar biosyn 96.3 0.048 1E-06 60.1 13.2 147 459-617 138-322 (374)
396 PRK13796 GTPase YqeH; Provisio 96.3 0.0063 1.4E-07 66.3 5.9 55 459-519 161-221 (365)
397 TIGR00157 ribosome small subun 96.2 0.0075 1.6E-07 62.2 5.9 23 460-482 122-144 (245)
398 TIGR03597 GTPase_YqeH ribosome 96.2 0.01 2.2E-07 64.5 6.8 56 459-520 155-216 (360)
399 cd02038 FleN-like FleN is a me 96.1 0.026 5.6E-07 52.9 8.3 104 462-580 4-109 (139)
400 PRK12289 GTPase RsgA; Reviewed 96.1 0.011 2.4E-07 64.5 6.3 58 460-521 174-237 (352)
401 cd01854 YjeQ_engC YjeQ/EngC. 96.0 0.011 2.5E-07 62.1 6.3 59 459-521 162-226 (287)
402 COG1162 Predicted GTPases [Gen 96.0 0.025 5.5E-07 60.6 8.7 96 522-626 70-166 (301)
403 cd00009 AAA The AAA+ (ATPases 96.0 0.04 8.8E-07 48.4 8.6 23 460-482 21-43 (151)
404 PRK14721 flhF flagellar biosyn 96.0 0.035 7.6E-07 62.0 9.9 103 508-628 270-383 (420)
405 PF09547 Spore_IV_A: Stage IV 95.9 0.12 2.6E-06 58.0 13.7 142 459-611 18-219 (492)
406 PF00448 SRP54: SRP54-type pro 95.9 0.013 2.9E-07 58.6 5.7 141 459-617 2-181 (196)
407 PRK11537 putative GTP-binding 95.9 0.11 2.3E-06 56.0 12.9 95 509-619 92-196 (318)
408 COG3523 IcmF Type VI protein s 95.9 0.034 7.4E-07 68.8 10.1 112 460-582 127-270 (1188)
409 COG1162 Predicted GTPases [Gen 95.8 0.011 2.5E-07 63.2 5.2 58 460-522 166-230 (301)
410 cd02036 MinD Bacterial cell di 95.8 0.19 4E-06 47.5 12.7 81 509-601 64-144 (179)
411 PF02492 cobW: CobW/HypB/UreG, 95.7 0.032 7E-07 54.3 7.6 81 508-600 85-171 (178)
412 PRK00098 GTPase RsgA; Reviewed 95.7 0.018 4E-07 60.9 6.2 58 460-521 166-229 (298)
413 cd03111 CpaE_like This protein 95.6 0.073 1.6E-06 47.8 8.7 100 464-577 6-106 (106)
414 PRK05703 flhF flagellar biosyn 95.6 0.062 1.3E-06 60.0 10.0 89 508-615 300-396 (424)
415 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.089 1.9E-06 43.7 8.6 68 461-543 2-70 (99)
416 PF05729 NACHT: NACHT domain 95.4 0.03 6.6E-07 51.5 5.9 21 461-481 3-23 (166)
417 TIGR02475 CobW cobalamin biosy 95.3 0.25 5.4E-06 53.7 13.2 100 508-621 93-224 (341)
418 PF13173 AAA_14: AAA domain 95.2 0.038 8.2E-07 50.8 5.6 23 460-482 4-26 (128)
419 COG1618 Predicted nucleotide k 95.1 0.78 1.7E-05 45.9 14.7 145 458-626 5-175 (179)
420 PRK11889 flhF flagellar biosyn 95.1 0.083 1.8E-06 59.1 8.8 141 459-617 242-418 (436)
421 PRK12726 flagellar biosynthesi 95.0 0.15 3.3E-06 56.7 10.7 92 508-617 286-383 (407)
422 PRK06995 flhF flagellar biosyn 95.0 0.11 2.3E-06 59.2 9.7 103 508-628 335-448 (484)
423 PRK12723 flagellar biosynthesi 94.9 0.13 2.9E-06 56.9 9.8 94 508-619 255-356 (388)
424 COG0523 Putative GTPases (G3E 94.8 0.42 9.1E-06 51.9 13.1 90 508-610 85-185 (323)
425 PRK14723 flhF flagellar biosyn 94.7 0.23 5E-06 59.4 11.7 154 460-628 187-380 (767)
426 PHA02518 ParA-like protein; Pr 94.4 0.25 5.5E-06 48.0 9.4 67 508-579 77-144 (211)
427 PRK04195 replication factor C 94.4 0.45 9.7E-06 53.7 12.6 22 460-481 41-62 (482)
428 PRK06731 flhF flagellar biosyn 94.3 0.37 8.1E-06 50.9 11.0 139 459-616 76-251 (270)
429 PRK12724 flagellar biosynthesi 94.2 0.13 2.9E-06 57.7 7.9 134 459-609 224-394 (432)
430 PF13207 AAA_17: AAA domain; P 94.2 0.044 9.5E-07 48.9 3.4 21 460-480 1-21 (121)
431 PF06858 NOG1: Nucleolar GTP-b 94.0 0.17 3.7E-06 42.2 6.1 44 531-579 13-58 (58)
432 TIGR03574 selen_PSTK L-seryl-t 93.9 0.33 7.2E-06 49.6 9.5 20 461-480 2-21 (249)
433 cd03222 ABC_RNaseL_inhibitor T 93.9 0.27 5.8E-06 48.7 8.5 87 460-558 27-118 (177)
434 KOG4181|consensus 93.8 0.89 1.9E-05 50.2 12.9 84 459-542 189-309 (491)
435 COG1419 FlhF Flagellar GTP-bin 93.8 0.17 3.8E-06 56.3 7.7 153 459-630 204-397 (407)
436 PF13671 AAA_33: AAA domain; P 93.8 0.052 1.1E-06 49.6 3.2 20 461-480 2-21 (143)
437 KOG1533|consensus 93.8 0.025 5.5E-07 59.1 1.1 68 508-581 97-176 (290)
438 KOG1424|consensus 93.6 0.09 1.9E-06 59.9 5.1 56 458-519 314-370 (562)
439 KOG0780|consensus 93.5 0.083 1.8E-06 58.6 4.5 87 460-546 103-228 (483)
440 smart00382 AAA ATPases associa 93.4 0.086 1.9E-06 45.5 3.8 26 459-484 3-28 (148)
441 cd01120 RecA-like_NTPases RecA 93.4 0.32 6.9E-06 44.3 7.6 21 461-481 2-22 (165)
442 cd04178 Nucleostemin_like Nucl 93.4 0.11 2.5E-06 50.9 5.0 44 533-582 1-44 (172)
443 KOG1534|consensus 93.4 0.054 1.2E-06 56.0 2.7 112 509-624 99-248 (273)
444 PRK08118 topology modulation p 93.4 0.068 1.5E-06 52.0 3.2 21 460-480 3-23 (167)
445 PF03266 NTPase_1: NTPase; In 93.3 0.12 2.5E-06 50.8 4.8 21 460-480 1-21 (168)
446 COG1121 ZnuC ABC-type Mn/Zn tr 93.3 0.16 3.5E-06 53.4 6.1 21 460-480 32-52 (254)
447 TIGR00150 HI0065_YjeE ATPase, 93.3 0.22 4.8E-06 47.6 6.5 22 460-481 24-45 (133)
448 PRK07261 topology modulation p 93.2 0.072 1.6E-06 51.8 3.2 21 460-480 2-22 (171)
449 PRK08099 bifunctional DNA-bind 93.1 0.26 5.7E-06 54.7 7.7 25 457-481 218-242 (399)
450 cd02032 Bchl_like This family 92.9 0.83 1.8E-05 46.9 10.6 80 508-600 116-196 (267)
451 PF00005 ABC_tran: ABC transpo 92.9 0.088 1.9E-06 48.0 3.1 22 460-481 13-34 (137)
452 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.9 0.39 8.4E-06 45.3 7.5 22 460-481 28-49 (144)
453 KOG2485|consensus 92.8 0.17 3.7E-06 54.8 5.6 59 457-518 142-206 (335)
454 PF05621 TniB: Bacterial TniB 92.8 0.41 8.9E-06 51.6 8.4 102 459-578 62-190 (302)
455 PF13521 AAA_28: AAA domain; P 92.7 0.068 1.5E-06 50.7 2.3 22 460-481 1-22 (163)
456 COG3640 CooC CO dehydrogenase 92.7 0.33 7.1E-06 51.0 7.3 45 528-580 152-197 (255)
457 COG0563 Adk Adenylate kinase a 92.6 0.096 2.1E-06 51.9 3.1 22 460-481 2-23 (178)
458 PF02367 UPF0079: Uncharacteri 92.6 0.15 3.2E-06 48.2 4.1 22 460-481 17-38 (123)
459 PRK10646 ADP-binding protein; 92.5 0.47 1E-05 46.4 7.7 22 460-481 30-51 (153)
460 PF13238 AAA_18: AAA domain; P 92.4 0.12 2.6E-06 45.8 3.2 21 461-481 1-21 (129)
461 PF00004 AAA: ATPase family as 92.4 0.11 2.5E-06 46.1 3.0 21 461-481 1-21 (132)
462 PRK08727 hypothetical protein; 92.3 0.3 6.4E-06 49.9 6.4 20 461-480 44-63 (233)
463 KOG1424|consensus 92.3 0.21 4.5E-06 57.1 5.6 79 520-611 164-244 (562)
464 PRK07003 DNA polymerase III su 92.3 0.66 1.4E-05 55.7 9.8 24 460-483 40-63 (830)
465 COG0802 Predicted ATPase or ki 92.2 0.43 9.3E-06 46.7 6.9 61 460-521 27-87 (149)
466 cd02117 NifH_like This family 91.8 1.9 4E-05 43.0 11.3 85 508-601 117-203 (212)
467 PRK06217 hypothetical protein; 91.8 0.14 3.1E-06 49.8 3.3 23 459-481 2-24 (183)
468 cd00267 ABC_ATPase ABC (ATP-bi 91.8 0.52 1.1E-05 44.4 7.0 22 460-481 27-48 (157)
469 PF07728 AAA_5: AAA domain (dy 91.7 0.16 3.5E-06 46.7 3.3 21 460-480 1-21 (139)
470 PRK05416 glmZ(sRNA)-inactivati 91.7 1.1 2.3E-05 48.0 9.9 86 460-579 8-95 (288)
471 cd01131 PilT Pilus retraction 91.6 0.71 1.5E-05 45.9 8.0 22 461-482 4-25 (198)
472 PF00437 T2SE: Type II/IV secr 91.6 0.43 9.4E-06 49.1 6.7 85 459-547 128-212 (270)
473 PRK13851 type IV secretion sys 91.4 0.79 1.7E-05 50.1 8.7 87 459-548 163-252 (344)
474 TIGR02322 phosphon_PhnN phosph 91.3 0.17 3.6E-06 48.7 3.1 22 460-481 3-24 (179)
475 cd02037 MRP-like MRP (Multiple 91.3 2.2 4.8E-05 40.8 10.8 85 507-601 67-159 (169)
476 PLN03025 replication factor C 91.2 1.1 2.4E-05 47.7 9.5 23 460-482 36-58 (319)
477 cd01129 PulE-GspE PulE/GspE Th 91.2 0.8 1.7E-05 48.0 8.3 86 460-550 82-167 (264)
478 PRK01889 GTPase RsgA; Reviewed 91.2 0.21 4.5E-06 54.5 4.0 22 460-481 197-218 (356)
479 PRK07764 DNA polymerase III su 91.2 0.96 2.1E-05 54.8 9.9 23 461-483 40-62 (824)
480 PRK03839 putative kinase; Prov 91.2 0.18 3.9E-06 48.6 3.2 22 460-481 2-23 (180)
481 PRK13900 type IV secretion sys 91.1 0.85 1.8E-05 49.5 8.6 87 458-547 160-250 (332)
482 PRK10078 ribose 1,5-bisphospho 91.1 0.18 4E-06 49.2 3.2 22 460-481 4-25 (186)
483 PF13191 AAA_16: AAA ATPase do 91.0 0.17 3.7E-06 47.8 2.8 22 459-480 25-46 (185)
484 PF13555 AAA_29: P-loop contai 91.0 0.21 4.6E-06 42.0 3.0 21 460-480 25-45 (62)
485 cd02019 NK Nucleoside/nucleoti 91.0 0.21 4.6E-06 41.6 3.1 21 461-481 2-22 (69)
486 PRK14086 dnaA chromosomal repl 91.0 6.2 0.00013 46.6 15.9 20 461-480 317-336 (617)
487 COG0552 FtsY Signal recognitio 91.0 0.57 1.2E-05 51.2 7.0 143 458-619 139-327 (340)
488 smart00072 GuKc Guanylate kina 90.9 0.49 1.1E-05 46.2 6.0 22 460-481 4-25 (184)
489 PF13401 AAA_22: AAA domain; P 90.9 0.2 4.4E-06 44.9 3.1 22 460-481 6-27 (131)
490 cd03255 ABC_MJ0796_Lo1CDE_FtsE 90.9 0.2 4.3E-06 49.7 3.2 22 460-481 32-53 (218)
491 TIGR01360 aden_kin_iso1 adenyl 90.8 0.19 4.2E-06 48.0 3.0 21 460-480 5-25 (188)
492 TIGR03263 guanyl_kin guanylate 90.8 0.2 4.3E-06 48.0 3.0 22 460-481 3-24 (180)
493 PRK13894 conjugal transfer ATP 90.7 0.92 2E-05 49.0 8.3 82 459-546 149-233 (319)
494 PF03215 Rad17: Rad17 cell cyc 90.7 1.5 3.2E-05 50.6 10.3 22 460-481 47-68 (519)
495 PF11111 CENP-M: Centromere pr 90.6 3.9 8.5E-05 41.2 11.9 136 458-624 15-150 (176)
496 COG1116 TauB ABC-type nitrate/ 90.5 0.2 4.3E-06 52.6 3.0 21 460-480 31-51 (248)
497 TIGR00960 3a0501s02 Type II (G 90.5 0.22 4.8E-06 49.3 3.2 22 460-481 31-52 (216)
498 KOG3929|consensus 90.4 0.065 1.4E-06 56.8 -0.6 87 457-546 44-134 (363)
499 cd03225 ABC_cobalt_CbiO_domain 90.4 0.23 5E-06 48.9 3.2 22 460-481 29-50 (211)
500 cd01130 VirB11-like_ATPase Typ 90.4 1.2 2.6E-05 43.7 8.2 23 459-481 26-48 (186)
No 1
>KOG0084|consensus
Probab=100.00 E-value=6.3e-39 Score=314.86 Aligned_cols=202 Identities=33% Similarity=0.635 Sum_probs=178.9
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
...++.|||+|||+.|||||+|+.||.++.|.+.|..|+|+||..+++.++++ .++||||||+||+||+.+...||++|
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk-~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGK-TIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecce-EEEEEeeeccccHHHhhhhHhhccCC
Confidence 45789999999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
+|+|||||+|+..||+++..|+.++..+. ..++|.||||||+|+.+.+ .+..++++.|+..++...|+|+||+.+
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~----~~~v~~lLVGNK~Dl~~~~-~v~~~~a~~fa~~~~~~~f~ETSAK~~ 157 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYA----SENVPKLLVGNKCDLTEKR-VVSTEEAQEFADELGIPIFLETSAKDS 157 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhc----cCCCCeEEEeeccccHhhe-ecCHHHHHHHHHhcCCcceeecccCCc
Confidence 99999999999999999999999999764 4669999999999999888 899999999999999744999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094 613 INIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C 663 (663)
.||++.|..|+..+..++........ ....++.+.. .+..+..+.|||
T Consensus 158 ~NVe~~F~~la~~lk~~~~~~~~~~~--~~~~~~ql~~-~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 158 TNVEDAFLTLAKELKQRKGLHVKWST--ASLESVQLKG-TPVKKSNGGCCE 205 (205)
T ss_pred cCHHHHHHHHHHHHHHhcccCCCCCc--CCCCceeeCC-CCcccccCCCCC
Confidence 99999999999999988876554332 3445566666 344445555655
No 2
>KOG0078|consensus
Probab=100.00 E-value=3.7e-35 Score=290.72 Aligned_cols=172 Identities=34% Similarity=0.700 Sum_probs=163.4
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
++++.+||+|||++|||||+|+.+|..+.|...+..|+|+||..+++.+++. .+.|+||||+||++|+.+...||+.|+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~-~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGK-KIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCe-EEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 6788999999999999999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|||||+++..||+++..|+..+.+|. ..++++||||||+|+...| .|..+.++++|..+|. .|+||||++|.
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a----~~~v~~~LvGNK~D~~~~R-~V~~e~ge~lA~e~G~-~F~EtSAk~~~ 160 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHA----SDDVVKILVGNKCDLEEKR-QVSKERGEALAREYGI-KFFETSAKTNF 160 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhC----CCCCcEEEeeccccccccc-cccHHHHHHHHHHhCC-eEEEccccCCC
Confidence 9999999999999999999999999763 3589999999999999877 9999999999999995 89999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy4094 614 NIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k~ 632 (663)
||+++|..|++.++.+...
T Consensus 161 NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKLED 179 (207)
T ss_pred CHHHHHHHHHHHHHhhcch
Confidence 9999999999999976554
No 3
>KOG0092|consensus
Probab=100.00 E-value=1.2e-35 Score=290.82 Aligned_cols=197 Identities=26% Similarity=0.529 Sum_probs=174.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|||+.+||||||+.||+.+.|.+...+|||.-|..+++.+++. .++|.||||+||++|..+.++|||+|+++|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~-~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDN-TIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCc-EEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4589999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||+++.+||..++.|+++|.+.. .+++.|.|||||+||.+.| .|..+++..+|...|+ .|||+||++|.||+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~----~~~~vialvGNK~DL~~~R-~V~~~ea~~yAe~~gl-l~~ETSAKTg~Nv~ 156 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQA----SPNIVIALVGNKADLLERR-EVEFEEAQAYAESQGL-LFFETSAKTGENVN 156 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhC----CCCeEEEEecchhhhhhcc-cccHHHHHHHHHhcCC-EEEEEecccccCHH
Confidence 9999999999999999999999753 3678888999999998877 8999999999999996 69999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094 617 DAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663 (663)
Q Consensus 617 ELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C 663 (663)
++|..|++.++......... .+++..+.+++.+++.....+|| |
T Consensus 157 ~if~~Ia~~lp~~~~~~~~~--~~~~~~g~~l~~~~~~~~~~~~C-~ 200 (200)
T KOG0092|consen 157 EIFQAIAEKLPCSDPQERQG--LPNRRQGVDLNSNQEPARPSGCC-A 200 (200)
T ss_pred HHHHHHHHhccCcccccccc--ccccccceecccCCCCcCcCCcC-C
Confidence 99999999999877654432 23444778888765344444444 5
No 4
>KOG0094|consensus
Probab=100.00 E-value=3.2e-35 Score=288.71 Aligned_cols=171 Identities=31% Similarity=0.521 Sum_probs=159.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||++||+.+|||||||.||+-+.|+..|.+|||+||..+++.+.+. .++|++|||+|||+|+.+...|+|++.++|
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~-~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCc-EEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 4499999999999999999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++|..||++...|++.++. .++..++-|+|||||.||.+.+ ++..+++...|++++. .|+++||+.|+||.
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~---e~gs~~viI~LVGnKtDL~dkr-qvs~eEg~~kAkel~a-~f~etsak~g~NVk 174 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRR---ERGSDDVIIFLVGNKTDLSDKR-QVSIEEGERKAKELNA-EFIETSAKAGENVK 174 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHh---ccCCCceEEEEEcccccccchh-hhhHHHHHHHHHHhCc-EEEEecccCCCCHH
Confidence 99999999999999999999985 3344468889999999999987 8999999999999996 79999999999999
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy4094 617 DAAKTLVQKILENDKVQ 633 (663)
Q Consensus 617 ELFe~IIr~Ile~~k~~ 633 (663)
++|..|+..+.......
T Consensus 175 ~lFrrIaa~l~~~~~~~ 191 (221)
T KOG0094|consen 175 QLFRRIAAALPGMEVLE 191 (221)
T ss_pred HHHHHHHHhccCccccc
Confidence 99999999988876643
No 5
>KOG0394|consensus
Probab=100.00 E-value=5e-35 Score=285.11 Aligned_cols=203 Identities=31% Similarity=0.576 Sum_probs=175.7
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|++||||||||++|+...|...|..|||.||..+.+.+++. .+.|+||||+||++|+++.-.|||++|+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~-~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDR-SVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCe-EEEEEEEecccHHHhhhcccceecCCce
Confidence 345699999999999999999999999999999999999999999999976 8999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-r~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
+++|||++++.||+++..|+.++..+..-......|+||+|||+|+... .+.++...+++||+..|.++|||+|||.+.
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999998765555567899999999999873 358999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh-hhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094 614 NIDDAAKTLVQKILENDKV-QANGDSHATSEAVFSLNRNSQETKNGRNCAC 663 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k~-~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C 663 (663)
||++.|+.+++.++..... .... ..-.+.+.+.... ....+||.|
T Consensus 165 NV~~AFe~ia~~aL~~E~~~~~~~---~~~~d~i~~~~~~--~~~~~~c~c 210 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDREIAEL---ADYSDQIVLSTKA--NNQSSGCEC 210 (210)
T ss_pred cHHHHHHHHHHHHHhccchhhhhh---hhcCccccccccc--ccCCCCCCC
Confidence 9999999999999988764 1111 1223445555444 222336777
No 6
>KOG0098|consensus
Probab=100.00 E-value=2.5e-34 Score=280.72 Aligned_cols=173 Identities=32% Similarity=0.606 Sum_probs=163.1
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
+.+.||++++|+.|||||+|+.||.+..|.+.+..|+|++|..+.+.+++. .++|+||||+||+.|+++...||+.|.+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k-~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGK-QIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCc-eEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 457799999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|||||++++++|..+..|+.+++++ ..+++.|+|+|||+||...| .|..+++++||+++|+ .|+|+||++++|
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~----~~~NmvImLiGNKsDL~~rR-~Vs~EEGeaFA~ehgL-ifmETSakt~~~ 155 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQH----SNENMVIMLIGNKSDLEARR-EVSKEEGEAFAREHGL-IFMETSAKTAEN 155 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHh----cCCCcEEEEEcchhhhhccc-cccHHHHHHHHHHcCc-eeehhhhhhhhh
Confidence 99999999999999999999999976 35789999999999998877 9999999999999997 599999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKVQA 634 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~~~ 634 (663)
|+|+|..+...|+..-+...
T Consensus 156 VEEaF~nta~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 156 VEEAFINTAKEIYRKIQDGV 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998766433
No 7
>KOG0080|consensus
Probab=100.00 E-value=5.6e-34 Score=273.02 Aligned_cols=199 Identities=35% Similarity=0.572 Sum_probs=173.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
+...|||+|||++|||||+|+.+|+.+.|++....|||+||..+.+.+++. .++|.||||+||++|+.+...||+.|.+
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~-~~KlaiWDTAGqErFRtLTpSyyRgaqG 86 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGK-RLKLAIWDTAGQERFRTLTPSYYRGAQG 86 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCc-eEEEEEEeccchHhhhccCHhHhccCce
Confidence 456799999999999999999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++.+++|.++..|+.+|..++. .+++..||||||+|...+| .|..+++..||+.+++ -|+||||++.+|
T Consensus 87 iIlVYDVT~Rdtf~kLd~W~~Eld~Yst---n~diikmlVgNKiDkes~R-~V~reEG~kfAr~h~~-LFiE~SAkt~~~ 161 (209)
T KOG0080|consen 87 IILVYDVTSRDTFVKLDIWLKELDLYST---NPDIIKMLVGNKIDKESER-VVDREEGLKFARKHRC-LFIECSAKTREN 161 (209)
T ss_pred eEEEEEccchhhHHhHHHHHHHHHhhcC---CccHhHhhhcccccchhcc-cccHHHHHHHHHhhCc-EEEEcchhhhcc
Confidence 9999999999999999999999998764 4668889999999987777 8999999999999997 599999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCc-cc--cCCCCCCCC
Q psy4094 615 IDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNS-QE--TKNGRNCAC 663 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~-~k--~Kkkk~C~C 663 (663)
|..+|+.++..|++....-+. .++...+++..++ .. .-.++||.|
T Consensus 162 V~~~FeelveKIi~tp~l~~~----~n~~~~~~i~~~p~~~~~~~~g~~Cs~ 209 (209)
T KOG0080|consen 162 VQCCFEELVEKIIETPSLWEE----GNSSAGLDIASDPDGEASAHQGGCCSC 209 (209)
T ss_pred HHHHHHHHHHHHhcCcchhhc----cCCccccccccCCCcccccccCCccCC
Confidence 999999999999987655442 2344555555322 12 122457767
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.2e-33 Score=269.04 Aligned_cols=199 Identities=62% Similarity=1.083 Sum_probs=168.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecC-CceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWD-HETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vd-ge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
|||+|||++|||||||+++|+++.+...+.+|++.++..+.+.++ +. .+.++|||++|+++|+.++..+|+++|++|+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~il 79 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNT-VVRLQLWDIAGQERFGGMTRVYYRGAVGAII 79 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCC-EEEEEEEECCCchhhhhhHHHHhCCCCEEEE
Confidence 699999999999999999999999999999999999998888887 54 7899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+...+......++|+||||||+|+...+ .+..+++.++++.+++..|++|||++|.||++
T Consensus 80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL-AKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc-ccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999998865444345679999999999997544 67888999999999966899999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCC
Q psy4094 618 AAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNC 661 (663)
Q Consensus 618 LFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C 661 (663)
+|++|++.+....+....... ......+.++... ..+.++.|
T Consensus 159 ~f~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 200 (201)
T cd04107 159 AMRFLVKNILANDKNLQQAET-PEDGSVIDLKQTT-TKKKSKGC 200 (201)
T ss_pred HHHHHHHHHHHhchhhHhhcC-CCcccccccccce-eccccCCC
Confidence 999999999887665444331 2333455555544 34444455
No 9
>KOG0079|consensus
Probab=100.00 E-value=5.8e-34 Score=269.99 Aligned_cols=188 Identities=32% Similarity=0.638 Sum_probs=170.3
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.++..|+.+|||++|||||+|+.+|..+.|...|..|+|+||..+++.++|. .++|+|||++||++|+.+...||+..+
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~-~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGD-RVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCc-EEEEEEeecccHHHHHHHHHHHccCCc
Confidence 4667899999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||+++.+||.++..|+++++..| +.+|-||||||+|+++.+ .+..++++.||...|+ .+||+||+.++
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc-----dsv~~vLVGNK~d~~~Rr-vV~t~dAr~~A~~mgi-e~FETSaKe~~ 155 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC-----DSVPKVLVGNKNDDPERR-VVDTEDARAFALQMGI-ELFETSAKENE 155 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC-----ccccceecccCCCCccce-eeehHHHHHHHHhcCc-hheehhhhhcc
Confidence 9999999999999999999999999754 468999999999998766 8999999999999996 79999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCc
Q psy4094 614 NIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNS 652 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~ 652 (663)
|++.+|..|.++++..+..... ...+...+.+..+.
T Consensus 156 NvE~mF~cit~qvl~~k~r~~~---~~~r~~~~~l~~n~ 191 (198)
T KOG0079|consen 156 NVEAMFHCITKQVLQAKLRESV---EQQRADAVSLKDNS 191 (198)
T ss_pred cchHHHHHHHHHHHHHHHhhcH---HHHhhcceEeccCC
Confidence 9999999999998887632221 22556777887766
No 10
>KOG0087|consensus
Probab=100.00 E-value=3.9e-33 Score=276.56 Aligned_cols=174 Identities=32% Similarity=0.597 Sum_probs=164.2
Q ss_pred CCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc
Q psy4094 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE 531 (663)
Q Consensus 452 ~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ 531 (663)
+...++.|||++||++|||||-|+.||..+.|..+...|+|++|..+.+.+++. .++.+||||+||++|+.+...||+.
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k-~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGK-TVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCc-EEEEeeecccchhhhccccchhhcc
Confidence 356889999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
|.++|||||++.+.+|+++..|+.+|+.| ...+++|||||||+||...| .|..++++.++...+. .|+|+||..
T Consensus 87 AvGAllVYDITr~~Tfenv~rWL~ELRdh----ad~nivimLvGNK~DL~~lr-aV~te~~k~~Ae~~~l-~f~EtSAl~ 160 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVERWLKELRDH----ADSNIVIMLVGNKSDLNHLR-AVPTEDGKAFAEKEGL-FFLETSALD 160 (222)
T ss_pred cceeEEEEechhHHHHHHHHHHHHHHHhc----CCCCeEEEEeecchhhhhcc-ccchhhhHhHHHhcCc-eEEEecccc
Confidence 99999999999999999999999999976 34689999999999998866 8999999999999996 799999999
Q ss_pred CcCHHHHHHHHHHHHHhhhhh
Q psy4094 612 NINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~~k~ 632 (663)
+.||+++|..++..|+.....
T Consensus 161 ~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 161 ATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred cccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.5e-32 Score=264.15 Aligned_cols=170 Identities=25% Similarity=0.493 Sum_probs=156.0
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.++.+||+|||+.|||||||+.+|..+.|...+.++++.++....+.+++. .+.|+|||++|+++|+.++..|++++|+
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGR-RVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 446799999999999999999999999999889999999998888888876 7999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|||||++++.+|+.+..|+.++..+. .++|+||||||+||...+ .+..++++.+++.+++ .||+|||++|.|
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~-----~~~piilVGNK~DL~~~~-~v~~~~~~~~a~~~~~-~~~e~SAk~g~~ 154 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA-----PGVPKILVGNRLHLAFKR-QVATEQAQAYAERNGM-TFFEVSPLCNFN 154 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccchhcc-CCCHHHHHHHHHHcCC-EEEEecCCCCCC
Confidence 999999999999999999999997642 469999999999998766 6889999999999985 899999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKV 632 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~ 632 (663)
|+++|++|++.++.++..
T Consensus 155 V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 155 ITESFTELARIVLMRHGR 172 (189)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999876653
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9.5e-32 Score=265.46 Aligned_cols=168 Identities=34% Similarity=0.616 Sum_probs=151.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+.|+|||+.|||||||+++|+.+.|...|.+|+|.+|..+.+.+++. .+.|+||||+|+++|+.++..||++||++|||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~-~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGK-KIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCE-EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 36999999999999999999999999999999999999999999876 79999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+... ...++|+||||||+||...+ .+..+++.+++..+..+.||+|||++|.||+++
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~----~~~~~piilVgNK~DL~~~~-~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNKLDCETDR-EISRQQGEKFAQQITGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECccccccc-ccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 9999999999999999988754 23569999999999997765 788889999998863357999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy4094 619 AKTLVQKILENDKV 632 (663)
Q Consensus 619 Fe~IIr~Ile~~k~ 632 (663)
|.+|++.+......
T Consensus 155 F~~l~~~~~~~~~~ 168 (202)
T cd04120 155 FLKLVDDILKKMPL 168 (202)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999998775443
No 13
>KOG0093|consensus
Probab=100.00 E-value=3.6e-32 Score=257.63 Aligned_cols=175 Identities=31% Similarity=0.632 Sum_probs=164.3
Q ss_pred CCCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh
Q psy4094 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK 530 (663)
Q Consensus 451 ~~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r 530 (663)
.+.+.++.+||+|||+..||||+|+.+|+++.|...+.+|+|++|..+++.-..+ .++++||||+|||+|+.+...||+
T Consensus 14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~k-RiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDK-RIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeeccc-EEEEEEEecccchhhhHHHHHHhh
Confidence 4467788899999999999999999999999999999999999999999887776 799999999999999999999999
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
+++++|||||++|.+||..+..|+.+|+.+ ...++||||||||||+.++| .+..+.+++++.++|+ .|||+||+
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIkty----sw~naqvilvgnKCDmd~eR-vis~e~g~~l~~~LGf-efFEtSaK 166 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTY----SWDNAQVILVGNKCDMDSER-VISHERGRQLADQLGF-EFFETSAK 166 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheee----eccCceEEEEecccCCccce-eeeHHHHHHHHHHhCh-HHhhhccc
Confidence 999999999999999999999999999865 45789999999999999998 8999999999999996 89999999
Q ss_pred CCcCHHHHHHHHHHHHHhhhhh
Q psy4094 611 DNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile~~k~ 632 (663)
.+.||+.+|+.++..|.+.+..
T Consensus 167 ~NinVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 167 ENINVKQVFERLVDIICDKMSE 188 (193)
T ss_pred ccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999887764
No 14
>KOG0091|consensus
Probab=99.98 E-value=8.5e-32 Score=258.66 Aligned_cols=204 Identities=25% Similarity=0.513 Sum_probs=172.9
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
-..++|+++|||++-||||+|+++|..+.|.+-..+|+|+||+.+.+.+..+..++|++|||+||++|+++...||++.-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 34678999999999999999999999999999999999999999999998776899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++++|||++|+.||+.+..|+.+-..++. ....+.++|||+|+||..+| +|..++++.+++.+|+ .|+|+||++|.
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqR-qVt~EEaEklAa~hgM-~FVETSak~g~ 159 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQR-QVTAEEAEKLAASHGM-AFVETSAKNGC 159 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhc-cccHHHHHHHHHhcCc-eEEEecccCCC
Confidence 99999999999999999999998876543 23445667999999999888 9999999999999995 79999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhcCC------CCCCcccccccccCccccCCCCCCCC
Q psy4094 614 NIDDAAKTLVQKILENDKVQANGD------SHATSEAVFSLNRNSQETKNGRNCAC 663 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k~~~~~~------~~s~~~~si~l~k~~~k~Kkkk~C~C 663 (663)
||+|.|..|++.|+...+...... .-+.+.+.+.. +....+.++.|||
T Consensus 160 NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~--s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 160 NVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPR--SPSRKQPSKPCQC 213 (213)
T ss_pred cHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCC--cccccCCCCCCCC
Confidence 999999999999988765422110 00122333333 3334666777888
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.98 E-value=3e-31 Score=257.07 Aligned_cols=166 Identities=23% Similarity=0.408 Sum_probs=148.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+.+|+.+.|..+|.+|++.+| .+.+.+++. .+.|+||||+|+++|..++..+|+++|++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~-~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQ-RIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCE-EEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 4568999999999999999999999999999999998666 466777776 79999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCe
Q psy4094 536 FIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSG 603 (663)
Q Consensus 536 ILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ 603 (663)
|||||++++.||+++ ..|+..+..++ .++|+||||||+||.+. .+.+..+++.++|+.++++.
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 999999999999997 79999998753 46899999999999642 13688999999999999768
Q ss_pred EEEEeCCCCcC-HHHHHHHHHHHHHh
Q psy4094 604 WFETSAKDNIN-IDDAAKTLVQKILE 628 (663)
Q Consensus 604 ffEtSAKtGeN-VeELFe~IIr~Ile 628 (663)
|+||||++|.| |+++|..+++.++.
T Consensus 156 ~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred EEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999 99999999997653
No 16
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.3e-30 Score=253.15 Aligned_cols=195 Identities=32% Similarity=0.610 Sum_probs=164.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
+..+||+|||+.|||||||+++|++..|...+.+|++.++....+.+++. .+.+.|||++|+++|+.++..++++++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE-RVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCE-EEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 45699999999999999999999999998899999999998888888775 68899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+... ...+|+||||||+|+...+ .+..+++..++..++ ..||+|||++|.||
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~-----~~~~piivVgNK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi 155 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQN-----CDDVCKVLVGNKNDDPERK-VVETEDAYKFAGQMG-ISLFETSAKENINV 155 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECccccccc-ccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence 9999999999999999999988754 2468999999999997655 567788889998888 48999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCC
Q psy4094 616 DDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNC 661 (663)
Q Consensus 616 eELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C 661 (663)
+++|++|++.++..+....... .+....+....++..++++.|
T Consensus 156 ~~lf~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 198 (199)
T cd04110 156 EEMFNCITELVLRAKKDNLAKQ---QQQQQNDVVKLPKNSKRKKRC 198 (199)
T ss_pred HHHHHHHHHHHHHhhhccCccc---ccCCccccCccchhccccccC
Confidence 9999999999988766543322 333444444444443445555
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.97 E-value=6e-31 Score=253.96 Aligned_cols=162 Identities=25% Similarity=0.422 Sum_probs=145.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|+.|||||+|+.+|+.+.|..+|.+|++..+ .+.+.+++. .++|+||||+|+++|+.++..+|+++|++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~-~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGN-TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCE-EEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 6999999999999999999999999999999998766 455667765 79999999999999999999999999999999
Q ss_pred EeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---------CCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 539 FDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---------IANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 539 yDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---------~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
||++++.||+++ ..|+..+..+. .++|+||||||+||.+++ +.+..+++.++++.+++..|+|||
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 154 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYA-----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECS 154 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 999999999998 68999998642 369999999999996643 257889999999999865799999
Q ss_pred CCCCcCHHHHHHHHHHHHH
Q psy4094 609 AKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Il 627 (663)
|++|.||+++|..+++.+.
T Consensus 155 Ak~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 155 SKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCcccCHHHHHHHHHHHHh
Confidence 9999999999999998763
No 18
>KOG0086|consensus
Probab=99.97 E-value=2.1e-31 Score=253.77 Aligned_cols=175 Identities=31% Similarity=0.577 Sum_probs=163.8
Q ss_pred CCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc
Q psy4094 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE 531 (663)
Q Consensus 452 ~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ 531 (663)
...+++.||++|+|..|.|||+|+++|+.++|......|+|++|..+.+.+.+. .++|+||||+||++|+...+.||+.
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK-~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGK-TVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCc-EEEEEEeecccHHHHHHHHHHHhcc
Confidence 356889999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
|-+++||||++++++|+.+..|+..++.. ..+++.|||+|||.||..+| +|...++..||.+..+ -|+|+||++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~l----As~nIvviL~GnKkDL~~~R-~VtflEAs~FaqEnel-~flETSa~T 155 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTL----ASPNIVVILCGNKKDLDPER-EVTFLEASRFAQENEL-MFLETSALT 155 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhh----CCCcEEEEEeCChhhcChhh-hhhHHHHHhhhcccce-eeeeecccc
Confidence 99999999999999999999999999853 45789999999999999988 8999999999999986 599999999
Q ss_pred CcCHHHHHHHHHHHHHhhhhhh
Q psy4094 612 NINIDDAAKTLVQKILENDKVQ 633 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~~k~~ 633 (663)
|+||+|.|-.+++.|+.+-...
T Consensus 156 GeNVEEaFl~c~~tIl~kIE~G 177 (214)
T KOG0086|consen 156 GENVEEAFLKCARTILNKIESG 177 (214)
T ss_pred cccHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999998765543
No 19
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.3e-30 Score=255.35 Aligned_cols=201 Identities=31% Similarity=0.574 Sum_probs=167.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|+.|||||||+++|+++.+...+.++++.++..+.+.+.++..+.|+|||++|+++|..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999999988999999999998888854447899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+.... ....+|+||||||+|+...+ .+..+++.++++.++ +.|++|||++|.||++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~---~~~~~~iilvgNK~Dl~~~~-~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHI---QPHRPVFILVGHKCDLESQR-QVTREEAEKLAKDLG-MKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEcccccccc-ccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHH
Confidence 999999999999999999988643 22457899999999998755 678888999999988 5899999999999999
Q ss_pred HHHHHHHHHHhhhhhhh--------cCCCCCCcccccccccCcc-ccCCCCCCCC
Q psy4094 618 AAKTLVQKILENDKVQA--------NGDSHATSEAVFSLNRNSQ-ETKNGRNCAC 663 (663)
Q Consensus 618 LFe~IIr~Ile~~k~~~--------~~~~~s~~~~si~l~k~~~-k~Kkkk~C~C 663 (663)
+|++|++.++.+..... .......+...+.+.++.+ .....++|||
T Consensus 157 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 157 AFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence 99999999987765432 1222234455566665543 3345566777
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.97 E-value=1.6e-30 Score=251.40 Aligned_cols=164 Identities=22% Similarity=0.403 Sum_probs=145.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|||+.|||||||+.+|+.+.|...+.+|++.++ .+.+.+++. .+.|+||||+||++|+.++..||++||++|+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGR-TVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCE-EEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 38999999999999999999999999999999998665 445667765 7999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEE
Q psy4094 538 VFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWF 605 (663)
Q Consensus 538 VyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ff 605 (663)
|||++++.||+.+. .|+..+..+ ..++|+||||||+||.+.+ ..+..++++++++.++...||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~-----~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHH-----CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEE
Confidence 99999999999997 698888753 2469999999999996543 246778999999999866899
Q ss_pred EEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 606 ETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~Ile 628 (663)
+|||++|+||+++|.++++.++.
T Consensus 156 e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 156 ECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EeCCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998854
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.3e-30 Score=250.77 Aligned_cols=162 Identities=22% Similarity=0.409 Sum_probs=145.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|||+.|||||||+++|+++.|...|.+|++.++. +.+.+++. .+.|+||||+|+++|..++..+|++||++|||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~-~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQ-RIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCE-EEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 79999999999999999999999999999999987764 56777775 79999999999999999999999999999999
Q ss_pred EeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 539 FDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 539 yDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ffE 606 (663)
||++++.||+.+ ..|+..+..++ .++|+||||||+||..+ ...+..+++.++++.+++..|+|
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-----~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E 154 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-----PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLE 154 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-----CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEE
Confidence 999999999996 79999998753 46899999999999642 12588899999999999768999
Q ss_pred EeCCCCcC-HHHHHHHHHHHHH
Q psy4094 607 TSAKDNIN-IDDAAKTLVQKIL 627 (663)
Q Consensus 607 tSAKtGeN-VeELFe~IIr~Il 627 (663)
|||++|+| |+++|..+++.++
T Consensus 155 ~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 155 CSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CccCcCCcCHHHHHHHHHHHHh
Confidence 99999995 9999999999655
No 22
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.9e-30 Score=248.37 Aligned_cols=168 Identities=25% Similarity=0.442 Sum_probs=146.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|+|++|||||||+++|+.+.|...+.++++..+ .+.+.+++. .+.++||||+|+++|..++..+|+++|++||||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQ-PCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCE-EEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 689999999999999999999999888889988554 455666665 688999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF 619 (663)
|+++..+|+.+..|+..+..+.. ....++|+||||||+|+...+ .+...++..++..+++ .||+|||++|.||+++|
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilvgNK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKD-ESAADVPIMIVGNKCDKVYER-EVSTEEGAALARRLGC-EFIEASAKTNVNVERAF 155 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc-ccCCCCCEEEEEEChhccccC-ccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHH
Confidence 99999999999999998876532 113568999999999997655 6777888889988885 89999999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy4094 620 KTLVQKILENDKV 632 (663)
Q Consensus 620 e~IIr~Ile~~k~ 632 (663)
+++++.+..++..
T Consensus 156 ~~l~~~l~~~~~~ 168 (190)
T cd04144 156 YTLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHHhhcc
Confidence 9999988766554
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=3.7e-30 Score=240.10 Aligned_cols=164 Identities=32% Similarity=0.612 Sum_probs=149.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|+.|||||||+++|+.+.|...+.++++.++..+.+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQ-KIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 489999999999999999999999999999999999998888888776 6899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+... ...++|+||||||+|+...+ .+..+++.++++..++ .|++|||++|.||++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~e 154 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLEAQR-DVTYEEAKQFADENGL-LFLECSAKTGENVED 154 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECccccccc-CcCHHHHHHHHHHcCC-EEEEEECCCCCCHHH
Confidence 99999999999999999988753 23568999999999998766 6778899999998885 899999999999999
Q ss_pred HHHHHHHHHHh
Q psy4094 618 AAKTLVQKILE 628 (663)
Q Consensus 618 LFe~IIr~Ile 628 (663)
+|.++++.+++
T Consensus 155 ~f~~l~~~~~~ 165 (166)
T cd04122 155 AFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.2e-30 Score=259.08 Aligned_cols=169 Identities=19% Similarity=0.344 Sum_probs=150.1
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|||+.|||||+|+.+|+.+.|...|.+|++.+|. ..+.+++. .+.|+||||+|+++|..++..||++||++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~-~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQ-RVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCE-EEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 35689999999999999999999999999999999997774 45777776 79999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCe
Q psy4094 536 FIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSG 603 (663)
Q Consensus 536 ILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ 603 (663)
|||||++++.+|+.+ ..|+..+..++ .++|+||||||+||..+ .+.+..++++++|+.+++..
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~ 163 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYC-----PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV 163 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence 999999999999984 89999998653 35899999999999642 23688999999999999757
Q ss_pred EEEEeCCCCc-CHHHHHHHHHHHHHhhhh
Q psy4094 604 WFETSAKDNI-NIDDAAKTLVQKILENDK 631 (663)
Q Consensus 604 ffEtSAKtGe-NVeELFe~IIr~Ile~~k 631 (663)
||||||++|+ ||+++|..++..++.+..
T Consensus 164 ~~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 164 YLECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred EEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 9999999998 899999999999887543
No 25
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=5.7e-30 Score=244.69 Aligned_cols=187 Identities=34% Similarity=0.600 Sum_probs=160.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|+.|||||||+++|+++.|...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK-IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 58999999999999999999999998889999999998888888776 78999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|..+..|+..+..+. ...+|+||||||+|+.+.+ .+..+++..++..+++ +|++|||++|.||+++
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~~----~~~~~~ivv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~~~ 153 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRYA----RENVIKVIVANKSDLVNNK-VVDSNIAKSFCDSLNI-PFFETSAKQSINVEEA 153 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECCCCcccc-cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 99999999999999999988642 3458999999999998665 6777888889888886 8999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094 619 AKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663 (663)
Q Consensus 619 Fe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C 663 (663)
|.++++.++.+...+.. ...+..++.+++.+|.|
T Consensus 154 f~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 154 FILLVKLIIKRLEEQEL-----------SPKNIKQQFKKKNNCFI 187 (188)
T ss_pred HHHHHHHHHHHhhcCcC-----------CccccccccccccCccc
Confidence 99999999875443321 11333345666778877
No 26
>KOG0095|consensus
Probab=99.97 E-value=8.8e-31 Score=248.81 Aligned_cols=173 Identities=32% Similarity=0.615 Sum_probs=159.9
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
+++..|||++||..|||||+|+++|..+.|++..-.|+|++|..+++.++++ .++|+||||+||++|+++...||+.|+
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~ge-kiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGE-KIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCe-EEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 5778999999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|||||++...+|+-+.+|+.+|.++.+ ..+--||||||+|+.+.| ++..+.+++|...+. +-|+|+||+...
T Consensus 82 alilvydiscqpsfdclpewlreie~yan----~kvlkilvgnk~d~~drr-evp~qigeefs~~qd-myfletsakea~ 155 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYAN----NKVLKILVGNKIDLADRR-EVPQQIGEEFSEAQD-MYFLETSAKEAD 155 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhh----cceEEEeeccccchhhhh-hhhHHHHHHHHHhhh-hhhhhhcccchh
Confidence 99999999999999999999999998753 346679999999998877 889999999999877 479999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhh
Q psy4094 614 NIDDAAKTLVQKILENDKVQ 633 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k~~ 633 (663)
||+.||..++-.+....+..
T Consensus 156 nve~lf~~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 156 NVEKLFLDLACRLISEARQN 175 (213)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 99999999998887776543
No 27
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=8.5e-30 Score=239.68 Aligned_cols=169 Identities=31% Similarity=0.597 Sum_probs=150.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC---------ceeEEEEEEeCCCccchhhhHH
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH---------ETIIRLQLWDIAGQERFGNMTR 526 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg---------e~~vkLqIwDTpGQErfrsl~~ 526 (663)
++.+||+|+|++|||||||+++|.++.|...+.++++.++....+.+.. ...+.+.|||++|+++|..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 3568999999999999999999999999999999999999877776642 2258899999999999999999
Q ss_pred HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 527 VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 527 ~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE 606 (663)
.+++++|++|+|||++++.+|..+..|+..+..+. ...+.|+||||||+|+...+ .+..+++.+++..+++ +|++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e 156 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA---YCENPDIVLCGNKADLEDQR-QVSEEQAKALADKYGI-PYFE 156 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEeCccchhcC-ccCHHHHHHHHHHcCC-eEEE
Confidence 99999999999999999999999999999987642 23468999999999998765 6778889999999985 8999
Q ss_pred EeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 607 TSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Ile~ 629 (663)
|||++|.|++++|++|++.++++
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 28
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=7.8e-30 Score=242.56 Aligned_cols=165 Identities=28% Similarity=0.393 Sum_probs=147.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|||+.|||||||+++|+.+.|...+.++++..+ ...+.+++. .+.++|||++|+++|+.++..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNE-PALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCE-EEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 37999999999999999999999999989999998555 455677765 6889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+.... ...++|+||||||+|+...+ .+..+++..+++.+++ +|++|||++|.||++
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilvgNK~Dl~~~~-~v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVR---LTEDIPLVLVGNKVDLESQR-QVTTEEGRNLAREFNC-PFFETSAALRHYIDD 154 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhhhhcC-ccCHHHHHHHHHHhCC-EEEEEecCCCCCHHH
Confidence 999999999999999998887642 23569999999999997765 6788899999998885 899999999999999
Q ss_pred HHHHHHHHHHhh
Q psy4094 618 AAKTLVQKILEN 629 (663)
Q Consensus 618 LFe~IIr~Ile~ 629 (663)
+|++|++.+...
T Consensus 155 ~f~~l~~~~~~~ 166 (172)
T cd04141 155 AFHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
No 29
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.3e-29 Score=249.38 Aligned_cols=169 Identities=28% Similarity=0.441 Sum_probs=152.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|||++|||||||+++|+++.|...+.+|++.+++.+.+.+++...+.++|||++|++.|..++..|+++||++|||
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999999999999999999999998765468999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+...... ...++|+||||||+|+...+ .+..+++.++++.+++ .+++|||++|+||+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~-~~~~~piilVgNK~DL~~~~-~v~~~~~~~~~~~~~~-~~~~iSAktg~gv~~l 157 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKS-SETQPLVVLVGNKTDLEHNR-TVKDDKHARFAQANGM-ESCLVSAKTGDRVNLL 157 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccc-cCCCceEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHH
Confidence 9999999999999999999876422 12457899999999997655 6788889999999885 8999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy4094 619 AKTLVQKILEND 630 (663)
Q Consensus 619 Fe~IIr~Ile~~ 630 (663)
|++|++.+....
T Consensus 158 f~~l~~~l~~~~ 169 (215)
T cd04109 158 FQQLAAELLGVD 169 (215)
T ss_pred HHHHHHHHHhcc
Confidence 999999988653
No 30
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=1.9e-29 Score=249.28 Aligned_cols=169 Identities=32% Similarity=0.611 Sum_probs=153.5
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.++.+||+|||+.|||||||+++|+++.+...+.+++|.++..+.+.+++. .+.++|||++|+++|..++..+++++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK-TVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 446799999999999999999999999998889999999999999988875 7899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|||||+++..+|+.+..|+..+..+. ..++|+||||||+|+...+ .+..+++..++..+++ +|++|||++|.|
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~----~~~~piiiv~nK~Dl~~~~-~~~~~~~~~l~~~~~~-~~~e~SA~~g~~ 161 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHA----DSNIVIMMAGNKSDLNHLR-SVAEEDGQALAEKEGL-SFLETSALEATN 161 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhC----CCCCeEEEEEEChhccccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 999999999999999999999988642 3569999999999997765 6778888999888874 899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4094 615 IDDAAKTLVQKILEND 630 (663)
Q Consensus 615 VeELFe~IIr~Ile~~ 630 (663)
|+++|++|++.+....
T Consensus 162 v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 162 VEKAFQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987754
No 31
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1e-29 Score=234.38 Aligned_cols=161 Identities=36% Similarity=0.650 Sum_probs=151.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|+|+.|||||||+++|+++.|...+.+++|.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGK-PVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTE-EEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999999999999876 789999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF 619 (663)
|++++.||+.+..|+..+..+.. .++|+||||||+|+.+.+ .+..++++++++.++ .+|++|||+++.||.++|
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~~----~~~~iivvg~K~D~~~~~-~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYKP----EDIPIIVVGNKSDLSDER-EVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHST----TTSEEEEEEETTTGGGGS-SSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred ccccccccccccccccccccccc----ccccceeeeccccccccc-cchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence 99999999999999999997643 468999999999998755 788999999999999 699999999999999999
Q ss_pred HHHHHHHH
Q psy4094 620 KTLVQKIL 627 (663)
Q Consensus 620 e~IIr~Il 627 (663)
..+++.++
T Consensus 154 ~~~i~~i~ 161 (162)
T PF00071_consen 154 QELIRKIL 161 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999885
No 32
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.4e-29 Score=236.11 Aligned_cols=167 Identities=32% Similarity=0.575 Sum_probs=150.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++.+|++|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCe-EEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 4589999999999999999999999999889999999988888888776 789999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..++......++|+||||||+|+.. + .+..+++.+++..+++..|+++||++|.||.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-R-QVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-c-ccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 9999999999999999999888765443446799999999999973 3 5778899999999987789999999999999
Q ss_pred HHHHHHHHHH
Q psy4094 617 DAAKTLVQKI 626 (663)
Q Consensus 617 ELFe~IIr~I 626 (663)
++|+++++.+
T Consensus 161 ~~~~~~~~~~ 170 (170)
T cd04116 161 AAFEEAVRRV 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 33
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.4e-29 Score=238.89 Aligned_cols=168 Identities=26% Similarity=0.435 Sum_probs=145.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|+.|||||||+++|+++.+...+.++++.++.. .+...++..+.++||||+|+++|..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999999999999999877754 4555423378999999999999999999999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---CCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---IANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
||++++.+|+.+. .|+..+..+ ..++|+||||||+|+...+ ..+..+++.+++..++...||+|||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-----CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 9999999999996 598877643 2468999999999996532 356788999999999876899999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKV 632 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~ 632 (663)
|+++|..+++.++..+..
T Consensus 155 v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 155 VEEVFDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999876654
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=2.2e-29 Score=235.57 Aligned_cols=165 Identities=34% Similarity=0.715 Sum_probs=150.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
+.+||+|+|++|||||||+++|.++.|...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGK-KIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCE-EEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 4689999999999999999999999999999999999998888888876 689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..+ ...++|+||||||+|+.+.+ .+..+++..++..+++ +|++|||++|.||+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 154 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGNKCDMEEKR-VVSKEEGEALADEYGI-KFLETSAKANINVE 154 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECccccccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHH
Confidence 999999999999999999999864 23568999999999998755 6677888999998885 89999999999999
Q ss_pred HHHHHHHHHHHh
Q psy4094 617 DAAKTLVQKILE 628 (663)
Q Consensus 617 ELFe~IIr~Ile 628 (663)
++|++|+++++.
T Consensus 155 ~~~~~i~~~~~~ 166 (167)
T cd01867 155 EAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
No 35
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=1.4e-29 Score=241.84 Aligned_cols=161 Identities=20% Similarity=0.359 Sum_probs=142.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|||+.|||||||+.+|+.+.|...|.+|++.++. ..+.+++. .+.|+|||++|+++|..++..+++++|++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGE-PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCE-EEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 79999999999999999999999999999999987664 45666665 78999999999999999999999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ffE 606 (663)
||++++.+|+.+. .|+..+..+ ..++|+||||||+|+..+ .+.+..++++++++..+.+.|+|
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~-----~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e 154 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHH-----CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVE 154 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEE
Confidence 9999999999997 599888753 246899999999998653 13678889999999888668999
Q ss_pred EeCCCCcCHHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~I 626 (663)
|||++|.||+++|+.+++.+
T Consensus 155 ~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 155 CSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=3.4e-29 Score=229.56 Aligned_cols=166 Identities=28% Similarity=0.506 Sum_probs=149.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.+++. .+.++||||+|+++|..++..+++++|++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNK-EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCe-EEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999999999999999998888888876 78999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCC-CCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTL-PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~-~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
||++++.+|+.+..|+..+..++.. ....++|+|+|+||+|+...+ .+..+++..++...+ ++||++||++|.|+++
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR-AVSEDEGRLWAESKG-FKYFETSACTGEGVNE 157 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc-ccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence 9999999999999999999876431 112469999999999997544 567888888888888 4899999999999999
Q ss_pred HHHHHHHHHH
Q psy4094 618 AAKTLVQKIL 627 (663)
Q Consensus 618 LFe~IIr~Il 627 (663)
+|++|++.++
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 37
>KOG0088|consensus
Probab=99.97 E-value=1.5e-30 Score=249.08 Aligned_cols=171 Identities=32% Similarity=0.560 Sum_probs=159.9
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
+...|||+++|.+-||||+|+.||+.+.|.-.+..|+-..|..+.+.+.+. ...|.||||+||++|..+...||+..++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~-ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDC-RADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccc-eeeeeeeeccchHhhhccCceEEeCCCc
Confidence 345699999999999999999999999999999999999999999999886 7899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|||||++|++||+.+..|..+|+..+ +..+.+++||||+||.++| .|..+++.+++..-|. .|+++||+.+.|
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~ml----Gnei~l~IVGNKiDLEeeR-~Vt~qeAe~YAesvGA-~y~eTSAk~N~G 162 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTML----GNEIELLIVGNKIDLEEER-QVTRQEAEAYAESVGA-LYMETSAKDNVG 162 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHh----CCeeEEEEecCcccHHHhh-hhhHHHHHHHHHhhch-hheecccccccC
Confidence 999999999999999999999999753 4568999999999999988 8999999999999996 799999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKV 632 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~ 632 (663)
|.++|+.+...++++...
T Consensus 163 i~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999988754
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=2.5e-29 Score=231.03 Aligned_cols=161 Identities=30% Similarity=0.530 Sum_probs=143.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+.+.|...+.+|++ +++.+.+.+++. .+.++||||+|+++|+.++..+++++|++|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQ-QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCE-EEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 7999999999999999999999999888888887 556677777775 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||+++..+|+.+..|+..+.... ...++|+|||+||+|+...+ .+..+++..+++.++ .+||+|||++|.||+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVK---DTENVPMVLVGNKCDLEDER-VVSREEGQALARQWG-CPFYETSAKSKINVDEV 154 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccc-eecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence 99999999999999999887642 23579999999999997655 566777888888888 58999999999999999
Q ss_pred HHHHHHHH
Q psy4094 619 AKTLVQKI 626 (663)
Q Consensus 619 Fe~IIr~I 626 (663)
|++|++.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998865
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=2.5e-29 Score=235.13 Aligned_cols=160 Identities=33% Similarity=0.641 Sum_probs=146.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+.+.|.+.+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGI-KVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 58999999999999999999999999999999999998888888875 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+..+. ..++|+|+||||.|+...+ .+..+++..+++..+ ++|++|||++|.||+++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~----~~~~~iilvgnK~Dl~~~~-~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYA----PEGVQKILIGNKADEEQKR-QVGDEQGNKLAKEYG-MDFFETSACTNSNIKES 153 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccc-CCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 99999999999999999988642 3469999999999997766 677889999999888 48999999999999999
Q ss_pred HHHHHHH
Q psy4094 619 AKTLVQK 625 (663)
Q Consensus 619 Fe~IIr~ 625 (663)
|.+|++.
T Consensus 154 f~~l~~~ 160 (161)
T cd04117 154 FTRLTEL 160 (161)
T ss_pred HHHHHhh
Confidence 9999874
No 40
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.7e-29 Score=240.86 Aligned_cols=167 Identities=31% Similarity=0.577 Sum_probs=149.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
+||+|+|++|||||||+++|+++.+. ..+.++++.++....+.+++. .+.++||||+|+++|..++..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGV-KVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCE-EEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 58999999999999999999998886 468889998988888888776 7899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+++..|+..+.... ..++|+||||||+|+...+ .+..+++..++..+++ +|+++||++|.|+++
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~NK~Dl~~~~-~~~~~~~~~l~~~~~~-~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYA----QEDVVIMLLGNKADMSGER-VVKREDGERLAKEYGV-PFMETSAKTGLNVEL 153 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEEcccchhcc-ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHH
Confidence 999999999999999999988642 2468999999999997655 5677888899988885 899999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy4094 618 AAKTLVQKILENDKV 632 (663)
Q Consensus 618 LFe~IIr~Ile~~k~ 632 (663)
+|.+|++.+......
T Consensus 154 l~~~l~~~~~~~~~~ 168 (191)
T cd04112 154 AFTAVAKELKHRKYE 168 (191)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999877543
No 41
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=3.2e-29 Score=240.94 Aligned_cols=167 Identities=29% Similarity=0.504 Sum_probs=147.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|||++|||||||+++|+++.+...+.+|++..+ .+.+.+++. .+.++||||+|+++|..++..|++.+|++|+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEE-TCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCE-EEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 48999999999999999999999999888999988665 566777775 6899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+.... ...++|+|||+||+|+...+ .+..+++..++..++. +|++|||++|.||++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~-~i~~~~~~~~~~~~~~-~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVK---DKDRVPMILVGNKCDLDSER-QVSTGEGQELAKSFGI-PFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccc-ccCHHHHHHHHHHhCC-EEEEeeCCCCCCHHH
Confidence 999999999999999999887642 23579999999999997655 5677788888888885 899999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy4094 618 AAKTLVQKILENDK 631 (663)
Q Consensus 618 LFe~IIr~Ile~~k 631 (663)
+|.+|++.+....+
T Consensus 158 ~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 158 AFYELVREIRKYLK 171 (189)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999876544
No 42
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=4.5e-29 Score=249.98 Aligned_cols=164 Identities=25% Similarity=0.408 Sum_probs=142.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|||++|||||||+++|+.+.|.. +.+|++.++..+.+ . .+.|.|||++|+++|+.++..||+++|++|+|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~-~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV 74 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----G-PYNISIWDTAGREQFHGLGSMYCRGAAAVILT 74 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----e-EEEEEEEeCCCcccchhhHHHHhccCCEEEEE
Confidence 589999999999999999999999874 67888887765544 1 47899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC------------------CCCCCCHHHHHHHHHHcC
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK------------------EGIANNPAKIDEFIKEHN 600 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d------------------er~~Vs~eei~qlak~~g 600 (663)
||++++.+|+.+..|+..+... ...++|+||||||+||.. ..+.+..+++.++++..+
T Consensus 75 ~Dvt~~~Sf~~l~~~~~~l~~~----~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~ 150 (220)
T cd04126 75 YDVSNVQSLEELEDRFLGLTDT----ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRIN 150 (220)
T ss_pred EECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhC
Confidence 9999999999999888877643 235689999999999965 134788999999999876
Q ss_pred C-------------CeEEEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094 601 F-------------SGWFETSAKDNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 601 ~-------------i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~ 632 (663)
. +.||||||++|+||+++|..|++.++.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~ 195 (220)
T cd04126 151 KYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILA 195 (220)
T ss_pred ccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 4799999999999999999999988765543
No 43
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=4.8e-29 Score=250.29 Aligned_cols=166 Identities=22% Similarity=0.394 Sum_probs=146.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|||+.|||||+|+.+|+.+.|...|.+|++.+|. ..+.+++. .+.|.||||+|++.|..++..+|+++|++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~-~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKR-RIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCE-EEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 79999999999999999999999999999999987664 56777776 78999999999999999999999999999999
Q ss_pred EeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094 539 FDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 539 yDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE 606 (663)
||++++.+|+.+ ..|+..+..+ ..++|+||||||+||..+. ..+..+++..+++.++++.|||
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-----~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E 154 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-----CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVE 154 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999 5788777643 3569999999999996531 1367889999999999778999
Q ss_pred EeCCCCcC-HHHHHHHHHHHHHhhhh
Q psy4094 607 TSAKDNIN-IDDAAKTLVQKILENDK 631 (663)
Q Consensus 607 tSAKtGeN-VeELFe~IIr~Ile~~k 631 (663)
|||++++| |+++|..++..++.+..
T Consensus 155 ~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 155 CSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred cCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 99999985 99999999998877554
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=2.7e-29 Score=242.19 Aligned_cols=163 Identities=27% Similarity=0.472 Sum_probs=143.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|||+.|||||||+++|+.+.|..+|.+|+|.++..+.+.+++. .+.|+|||++|+++|..++..++++||++|+|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~-~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGT-EITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 58999999999999999999999999999999999998888988876 78999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----CCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE----GIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de----r~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
||++++.+|+.+..|+..+..+. ...+| ||||||+||..+ ......+++++++..++ +.|++|||++|.|
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~----~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~ 153 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFN----KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSIN 153 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC----CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 99999999999999999988642 23466 689999999531 11233567888998888 4899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy4094 615 IDDAAKTLVQKILE 628 (663)
Q Consensus 615 VeELFe~IIr~Ile 628 (663)
|+++|+++++.++.
T Consensus 154 v~~lf~~l~~~l~~ 167 (182)
T cd04128 154 VQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 45
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=6.6e-29 Score=231.94 Aligned_cols=163 Identities=33% Similarity=0.670 Sum_probs=147.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|.++.|...+.++++.++....+..++. .+.+++||++|+++|..++..+++++|++|+|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDK-RVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 79999999999999999999999999999999999888888877765 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+..+. ..++|+||||||+|+...+ .+..+++.+++..+++ +|++|||++|.||+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 81 YDITNEESFNAVQDWSTQIKTYS----WDNAQVILVGNKCDMEDER-VVSSERGRQLADQLGF-EFFEASAKENINVKQV 154 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC----CCCCCEEEEEECcccCccc-ccCHHHHHHHHHHcCC-EEEEEECCCCCCHHHH
Confidence 99999999999999999987542 3468999999999997765 5667888889888885 8999999999999999
Q ss_pred HHHHHHHHHh
Q psy4094 619 AKTLVQKILE 628 (663)
Q Consensus 619 Fe~IIr~Ile 628 (663)
|++|++.+.+
T Consensus 155 ~~~l~~~~~~ 164 (165)
T cd01865 155 FERLVDIICD 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 46
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.9e-29 Score=231.34 Aligned_cols=163 Identities=34% Similarity=0.641 Sum_probs=148.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
+.+||+|+|+.|||||||+++|..+.+...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++.+|++|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGK-RVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCE-EEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 4589999999999999999999999999889999998988888888775 678999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..+ ...++|+|||+||+|+...+ .+..+++..+++.+++..+++|||++|.|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGNKCDLEEQR-EVLFEEACTLAEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence 999999999999999999999753 23579999999999997765 6777889999999887789999999999999
Q ss_pred HHHHHHHHH
Q psy4094 617 DAAKTLVQK 625 (663)
Q Consensus 617 ELFe~IIr~ 625 (663)
++|++|++.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999875
No 47
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=1.3e-28 Score=235.53 Aligned_cols=165 Identities=28% Similarity=0.533 Sum_probs=145.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
+||+|+|++|||||||+++|+++.|.. .+.++++.++..+.+.+++. .+.|.|||++|+++|..++..+++++|++||
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGER-VVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCE-EEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 589999999999999999999999875 68899998888888888876 7899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC---CCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE---GIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de---r~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
|||+++..+|+.+..|+..+... ..++|+|||+||+|+... ...+..+++.+++..++. .||++||++|.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 153 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNL-----EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QHFETSSKTGQN 153 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhc-----CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 99999999999999999988753 246899999999998542 135566778888888875 799999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4094 615 IDDAAKTLVQKILEND 630 (663)
Q Consensus 615 VeELFe~IIr~Ile~~ 630 (663)
|+++|++|++.+....
T Consensus 154 v~~l~~~i~~~~~~~~ 169 (193)
T cd04118 154 VDELFQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999997654
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=8.8e-29 Score=229.94 Aligned_cols=164 Identities=37% Similarity=0.701 Sum_probs=149.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|++|||||||+++|+++.+...+.++++.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK-TIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 489999999999999999999999998899999999998888888875 6889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|..+..|+..+.... ..++|+|+|+||+|+...+ .+..+++..++..+++ +|+++||++|.||++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~----~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKCDLTDKR-VVDYSEAQEFADELGI-PFLETSAKNATNVEQ 154 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC----CCCCcEEEEEEChhccccc-CCCHHHHHHHHHHcCC-eEEEEECCCCcCHHH
Confidence 999999999999999999998642 3468999999999997765 5777889999998885 899999999999999
Q ss_pred HHHHHHHHHHh
Q psy4094 618 AAKTLVQKILE 628 (663)
Q Consensus 618 LFe~IIr~Ile 628 (663)
+|.+|++++..
T Consensus 155 ~~~~i~~~~~~ 165 (166)
T cd01869 155 AFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998853
No 49
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.96 E-value=1.1e-28 Score=235.54 Aligned_cols=160 Identities=23% Similarity=0.348 Sum_probs=141.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|+.|||||||+.+|+.+.|...|.++++ +.+...+.+++. .+.|+||||+|+++|..++..+++++|++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGK-PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCE-EEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 7999999999999999999999999999999987 444556667665 78999999999999999999999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE 606 (663)
||++++.+|+.+. .|+..+... ..++|+||||||+||...+ ..+..+++..++..++++.|+|
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 154 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHH-----CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 154 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999996 698888753 2469999999999996532 2578899999999999778999
Q ss_pred EeCCCCcCHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~ 625 (663)
|||++|+||+++|+.+++.
T Consensus 155 ~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 155 CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ecccccCCHHHHHHHHHHh
Confidence 9999999999999999864
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.96 E-value=1.9e-28 Score=227.31 Aligned_cols=161 Identities=29% Similarity=0.522 Sum_probs=142.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+.+.+...+.++++..+ .+.+.+++. .+.++||||+|+++|..++..+++++|++|+|
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQ-QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCE-EEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 7999999999999999999999988888888888554 456777765 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||+++..+|+.+..|+..+.... ...++|+||||||+|+...+ .+..+++..+++.+++ +|++|||++|.||+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDER-VVGKEQGQNLARQWGC-AFLETSAKAKINVNEI 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCcchhcc-EEcHHHHHHHHHHhCC-EEEEeeCCCCCCHHHH
Confidence 99999999999999999887542 34679999999999997755 5666778888888884 8999999999999999
Q ss_pred HHHHHHHH
Q psy4094 619 AKTLVQKI 626 (663)
Q Consensus 619 Fe~IIr~I 626 (663)
|.+|++++
T Consensus 155 ~~~l~~~l 162 (164)
T cd04175 155 FYDLVRQI 162 (164)
T ss_pred HHHHHHHh
Confidence 99999866
No 51
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=1.8e-28 Score=226.79 Aligned_cols=161 Identities=27% Similarity=0.453 Sum_probs=142.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+.+.+...+.++++ +++...+.+++. .+.++|||++|+++|..++..+++++|++|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSS-PSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCE-EEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 7999999999999999999999999888888876 666777888775 67899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+++..|+..+.... ...++|+||||||+|+...+ .+...++..++..++. +|++|||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piviv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVK---GYEKVPIILVGNKVDLESER-EVSSAEGRALAEEWGC-PFMETSAKSKTMVNEL 154 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccchhcC-ccCHHHHHHHHHHhCC-EEEEecCCCCCCHHHH
Confidence 99999999999999999888642 23579999999999997654 5666778888888874 8999999999999999
Q ss_pred HHHHHHHH
Q psy4094 619 AKTLVQKI 626 (663)
Q Consensus 619 Fe~IIr~I 626 (663)
|.++++++
T Consensus 155 ~~~l~~~l 162 (163)
T cd04176 155 FAEIVRQM 162 (163)
T ss_pred HHHHHHhc
Confidence 99998764
No 52
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=2.6e-28 Score=226.18 Aligned_cols=163 Identities=36% Similarity=0.675 Sum_probs=147.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
+.+||+|+|.+|||||||+++|+++.+...+.++++.++..+.+.+++. .+.+++||++|+++|..++..++++++++|
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK-TIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 4589999999999999999999999999899999999998888888875 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..+. ..++|+||||||+|+...+ .+..+++..++...+ +.|++|||++|.||+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~pi~vv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 154 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLR-AVPTEEAKAFAEKNG-LSFIETSALDGTNVE 154 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccc-cCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence 9999999999999999999988653 2358999999999997765 667788889998877 489999999999999
Q ss_pred HHHHHHHHHH
Q psy4094 617 DAAKTLVQKI 626 (663)
Q Consensus 617 ELFe~IIr~I 626 (663)
++|++|+..+
T Consensus 155 ~l~~~l~~~i 164 (165)
T cd01868 155 EAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 53
>KOG0081|consensus
Probab=99.96 E-value=5.2e-30 Score=245.57 Aligned_cols=177 Identities=29% Similarity=0.532 Sum_probs=161.9
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC--------ceeEEEEEEeCCCccchhhh
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH--------ETIIRLQLWDIAGQERFGNM 524 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg--------e~~vkLqIwDTpGQErfrsl 524 (663)
..+++.+|++.+|++|||||+|+.+|..+.|......|+|+||..+.+.++. ...+.|++|||+||++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3578899999999999999999999999999999999999999999887742 23699999999999999999
Q ss_pred HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeE
Q psy4094 525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~f 604 (663)
...||+.|-++||+||+++..||-++..|+.+|+.|. ...+..|||+|||+||.+.| .|..+++.++|..+++ +|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA---YcE~PDivlcGNK~DL~~~R-~Vs~~qa~~La~kygl-PY 158 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA---YCENPDIVLCGNKADLEDQR-VVSEDQAAALADKYGL-PY 158 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh---ccCCCCEEEEcCccchhhhh-hhhHHHHHHHHHHhCC-Ce
Confidence 9999999999999999999999999999999999764 34667899999999999988 8999999999999995 89
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILENDKVQA 634 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~~k~~~ 634 (663)
||+||-+|.||++..+.++..++++...-.
T Consensus 159 fETSA~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988876433
No 54
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=8.2e-28 Score=235.29 Aligned_cols=172 Identities=33% Similarity=0.561 Sum_probs=148.2
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.....+||+|||+.|||||||+++|+++.+ ..+.++++.++....+.+++. .+.++||||+|+++|..++..+++++|
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGK-RLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCE-EEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 345569999999999999999999999877 467889998888888888775 688999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 534 GAFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~-wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
++|||||++++.+|+.+.. |...+..+. ...+.|+|||+||+|+...+ .+..+++..++..+++ .||+|||++|
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~---~~~~~~~ilv~NK~Dl~~~~-~i~~~~~~~~~~~~~~-~~~e~SAk~~ 162 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYS---TNQDCVKMLVGNKVDRESER-DVSREEGMALAKEHGC-LFLECSAKTR 162 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccC-ccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 9999999999999999975 666665432 23458999999999997765 5677888889888885 7999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhh
Q psy4094 613 INIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k~ 632 (663)
.||+++|++|++.+......
T Consensus 163 ~~v~~l~~~l~~~~~~~~~~ 182 (211)
T PLN03118 163 ENVEQCFEELALKIMEVPSL 182 (211)
T ss_pred CCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999876543
No 55
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=2.1e-28 Score=242.96 Aligned_cols=166 Identities=33% Similarity=0.535 Sum_probs=146.9
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|||+.|||||||+++|+.+.|...+.+|+|.++....+.+++. .+.+.|||++|+++|..++..||+++|++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCe-EEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 45589999999999999999999999999999999999998888877765 68999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+...+ .++|+||||||+|+... .+..+++ +++...++ .||+|||++|+||
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~--~v~~~~~-~~~~~~~~-~~~e~SAk~~~~i 160 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QVKAKQV-TFHRKKNL-QYYEISAKSNYNF 160 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhhhhc--cCCHHHH-HHHHhcCC-EEEEcCCCCCCCH
Confidence 99999999999999999999998653 46999999999999643 3445555 67777664 8999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4094 616 DDAAKTLVQKILENDK 631 (663)
Q Consensus 616 eELFe~IIr~Ile~~k 631 (663)
+++|.+|++.++....
T Consensus 161 ~~~f~~l~~~~~~~~~ 176 (219)
T PLN03071 161 EKPFLYLARKLAGDPN 176 (219)
T ss_pred HHHHHHHHHHHHcCcc
Confidence 9999999999987654
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=2.7e-28 Score=224.44 Aligned_cols=159 Identities=35% Similarity=0.639 Sum_probs=144.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecC--CceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWD--HETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
+||+|+|++|||||||+++|.++.+...+.++++.++....+.+. +. .+.++|||++|+++|..++..+++++|++|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v 79 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDE-DVRLMLWDTAGQEEFDAITKAYYRGAQACI 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCC-EEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence 489999999999999999999999999999999999988777776 44 689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+...+ .++|+|||+||+|+..++ .+..+++..++..+++ +||++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 152 (162)
T cd04106 80 LVFSTTDRESFEAIESWKEKVEAEC-----GDIPMVLVQTKIDLLDQA-VITNEEAEALAKRLQL-PLFRTSVKDDFNVT 152 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhccccc-CCCHHHHHHHHHHcCC-eEEEEECCCCCCHH
Confidence 9999999999999999999887542 469999999999997765 5677889999999886 89999999999999
Q ss_pred HHHHHHHHH
Q psy4094 617 DAAKTLVQK 625 (663)
Q Consensus 617 ELFe~IIr~ 625 (663)
++|++|...
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999999764
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=3.1e-28 Score=231.16 Aligned_cols=164 Identities=30% Similarity=0.495 Sum_probs=145.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|||+.|||||||+++|+++.|..+|.+|++.++..+.+.+++. .+.++|||++|+++|..++..+++++|++|+||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGV-PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 8999999999999999999999999999999999998888888876 689999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
|++++.+|+.+..|+..+.... ....+|+||||||+|+...+ ..+..+++.+++..++. .|++|||++|.||+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~---~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~~v~~l 156 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKEN---DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSVSALSGENVREF 156 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEEEECCCCCCHHHH
Confidence 9999999999999999886542 12357899999999996543 13456778888888885 7999999999999999
Q ss_pred HHHHHHHHHh
Q psy4094 619 AKTLVQKILE 628 (663)
Q Consensus 619 Fe~IIr~Ile 628 (663)
|+.|++.+.+
T Consensus 157 f~~l~~~~~~ 166 (170)
T cd04108 157 FFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 58
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=1.8e-28 Score=236.18 Aligned_cols=162 Identities=26% Similarity=0.409 Sum_probs=141.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|+|++|||||||+++|..+.|...+.++++.++. ..+.+++. .+.|+|||++|+++|..++..+|+++|++||||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~-~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGL-HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCE-EEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 8999999999999999999999999899999987654 45666665 689999999999999999999999999999999
Q ss_pred eCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHHcCCCeEEEE
Q psy4094 540 DVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-----------ANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 540 DVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-----------~Vs~eei~qlak~~g~i~ffEt 607 (663)
|++++.+|+.+. .|+..+..+. .++|+||||||+||...+. .+..+++..++...+.+.|++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 999999999996 6998887542 4699999999999976431 3566778889988886789999
Q ss_pred eCCCCcCHHHHHHHHHHHHHh
Q psy4094 608 SAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~Ile 628 (663)
||++|.||+++|.+|++.++.
T Consensus 155 SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 155 SAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred cCCcCCCHHHHHHHHHHHHhc
Confidence 999999999999999998864
No 59
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=3.5e-28 Score=224.43 Aligned_cols=161 Identities=34% Similarity=0.608 Sum_probs=146.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|++|+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGK-RVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCE-EEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 59999999999999999999999999999999999998888888875 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|..+..|+..+..+ ...++|++||+||+|+...+ .+..+++..++..++ +.|+++||+++.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARAL----ASPNIVVILVGNKSDLADQR-EVTFLEASRFAQENG-LLFLETSALTGENVEEA 153 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcchhc-cCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 9999999999999999988754 23579999999999997755 677888999999998 58999999999999999
Q ss_pred HHHHHHHH
Q psy4094 619 AKTLVQKI 626 (663)
Q Consensus 619 Fe~IIr~I 626 (663)
|+++++.+
T Consensus 154 ~~~~~~~~ 161 (161)
T cd04113 154 FLKCARSI 161 (161)
T ss_pred HHHHHHhC
Confidence 99998763
No 60
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=5.9e-28 Score=226.58 Aligned_cols=166 Identities=35% Similarity=0.674 Sum_probs=150.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
++.+||+|+|++|||||||+++|++..+...+.+++|.++....+.+++. .+.+.|||++|+++|..++..+++++|++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK-QIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45689999999999999999999999998888999999998888888875 67899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|||||++++.+|+.+..|+..++.+. ..++|+|||+||+|+...+ .+..+++..++...++ .|+++||+.++||
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i 154 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHS----NSNMTIMLIGNKCDLESRR-EVSYEEGEAFAKEHGL-IFMETSAKTASNV 154 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECccccccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCCH
Confidence 99999999999999999999998642 3579999999999997655 5778888999988885 7999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy4094 616 DDAAKTLVQKILE 628 (663)
Q Consensus 616 eELFe~IIr~Ile 628 (663)
+++|.++++++++
T Consensus 155 ~~~~~~~~~~~~~ 167 (168)
T cd01866 155 EEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=5.3e-28 Score=223.41 Aligned_cols=162 Identities=31% Similarity=0.552 Sum_probs=142.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+++.+...+.++++ +.+.+.+.+++. .+.+++||++|+++|..++..+++.+|++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGE-VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCE-EEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 5999999999999999999999999888888877 445566667765 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+.... ...++|+||||||+|+...+ .+..+++..++..++ .+|++|||++|.||+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVK---DRDDVPIVLVGNKCDLESER-VVSTEEGKELARQWG-CPFLETSAKERVNVDEA 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccc-eEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence 99999999999999998887643 23468999999999997765 567778888998888 58999999999999999
Q ss_pred HHHHHHHHH
Q psy4094 619 AKTLVQKIL 627 (663)
Q Consensus 619 Fe~IIr~Il 627 (663)
|++|++.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T smart00173 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998765
No 62
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=6.2e-28 Score=219.99 Aligned_cols=160 Identities=28% Similarity=0.513 Sum_probs=140.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+++||++|+++|+.++..|++++|++++|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCE-EEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 7999999999999999999999999888888887554 556667765 67899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+.... ...++|+|||+||+|+... .+..+++..++..+++ +|+++||++|.||+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVK---DSDDVPMVLVGNKCDLAAR--TVSSRQGQDLAKSYGI-PYIETSAKTRQGVEEA 153 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccc--eecHHHHHHHHHHhCC-eEEEecCCCCCCHHHH
Confidence 99999999999999998888643 2356899999999999762 4667788888888885 8999999999999999
Q ss_pred HHHHHHHH
Q psy4094 619 AKTLVQKI 626 (663)
Q Consensus 619 Fe~IIr~I 626 (663)
|++|++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 63
>KOG0097|consensus
Probab=99.96 E-value=2.6e-28 Score=230.45 Aligned_cols=174 Identities=32% Similarity=0.599 Sum_probs=161.8
Q ss_pred CCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc
Q psy4094 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE 531 (663)
Q Consensus 452 ~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ 531 (663)
+-++.+.||.+|||+-|||||+|+++|...+|..+...++|++|..+.+.+.++ .++|+||||+||++|+...+.||+.
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgq-kiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-KIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCc-EEEEEEeecccHHHHHHHHHHHhcc
Confidence 345678999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
+-++++|||++.+..+..+..|+...+. ...++..|+|+|||.||..+| ++..+++.+|+.+.|. -|+|+||++
T Consensus 84 aagalmvyditrrstynhlsswl~dar~----ltnpnt~i~lignkadle~qr-dv~yeeak~faeengl-~fle~sakt 157 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARN----LTNPNTVIFLIGNKADLESQR-DVTYEEAKEFAEENGL-MFLEASAKT 157 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhc----cCCCceEEEEecchhhhhhcc-cCcHHHHHHHHhhcCe-EEEEecccc
Confidence 9999999999999999999999988774 345778999999999999988 9999999999999996 699999999
Q ss_pred CcCHHHHHHHHHHHHHhhhhh
Q psy4094 612 NINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~~k~ 632 (663)
|.||++.|-..+.+|+..-+.
T Consensus 158 g~nvedafle~akkiyqniqd 178 (215)
T KOG0097|consen 158 GQNVEDAFLETAKKIYQNIQD 178 (215)
T ss_pred cCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999876543
No 64
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=6.2e-28 Score=227.61 Aligned_cols=161 Identities=36% Similarity=0.577 Sum_probs=141.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|+.|||||||+++|+.+.+...+.++++.++....+..++. .+.+.+|||+|+++|..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRG-KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 59999999999999999999999998889999999888777777665 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+...+ .++|+||||||+|+... .+. .+..+++...+ +.||+|||++|.||+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~piiiv~nK~Dl~~~--~~~-~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVC-----GNIPIVLCGNKVDIKDR--KVK-AKQITFHRKKN-LQYYEISAKSNYNFEKP 150 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhcccc--cCC-HHHHHHHHHcC-CEEEEEeCCCCCChHHH
Confidence 99999999999999999998753 27999999999999742 233 34556666655 58999999999999999
Q ss_pred HHHHHHHHHhh
Q psy4094 619 AKTLVQKILEN 629 (663)
Q Consensus 619 Fe~IIr~Ile~ 629 (663)
|++|++.+++.
T Consensus 151 f~~l~~~~~~~ 161 (166)
T cd00877 151 FLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 65
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=1.8e-27 Score=234.00 Aligned_cols=169 Identities=34% Similarity=0.671 Sum_probs=152.9
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
++.+||+|||+.|||||||+++|++..|...+.++++.++....+.+++. .+.+.+||++|+++|..++..+++.+|++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~-~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK-PIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45699999999999999999999999999889999999998888888876 68899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||+++..+|+.+..|+..+..+. ...+|+|+|+||+|+...+ .+..+++.++++.+++ .|+++||+++.||
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~----~~~~piiiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v 156 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHA----NANMTIMLIGNKCDLAHRR-AVSTEEGEQFAKEHGL-IFMEASAKTAQNV 156 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCcccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCCH
Confidence 99999999999999999998887542 3469999999999997765 6788899999999885 8999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4094 616 DDAAKTLVQKILENDK 631 (663)
Q Consensus 616 eELFe~IIr~Ile~~k 631 (663)
+++|+++++.++.+..
T Consensus 157 ~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 157 EEAFIKTAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999986543
No 66
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=9.9e-28 Score=225.47 Aligned_cols=163 Identities=37% Similarity=0.620 Sum_probs=146.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-hhHHHHHhcCcEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-NMTRVYYKEAVGAF 536 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-sl~~~~~r~ADgaI 536 (663)
.+||+|+|++|||||||+++|+.+.+...+.++++.++....+.+++. .+.++|||++|+++|+ .++..+++++|++|
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGE-RIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCe-EEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 489999999999999999999999998889999999999888888876 6899999999999987 57899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC---Cc
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD---NI 613 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt---Ge 613 (663)
+|||++++.+|+.+..|+..+..+. ...++|+|||+||+|+...+ .+..+++.+++..++ ++|++|||++ +.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHS---LPNEVPRILVGNKCDLREQI-QVPTDLAQRFADAHS-MPLFETSAKDPSEND 155 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhc---CCCCCCEEEEEECccchhhc-CCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence 9999999999999999999988653 23569999999999997765 677788889998887 5899999999 89
Q ss_pred CHHHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQKI 626 (663)
Q Consensus 614 NVeELFe~IIr~I 626 (663)
||+++|..+++++
T Consensus 156 ~i~~~f~~l~~~~ 168 (170)
T cd04115 156 HVEAIFMTLAHKL 168 (170)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999876
No 67
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=1.3e-27 Score=223.28 Aligned_cols=161 Identities=27% Similarity=0.430 Sum_probs=139.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+++.|...+.++++..+ ...+..+.. .+.+++||++|+++|..++..+++.+|++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKN-ICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCE-EEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 7999999999999999999999999888888887544 445555554 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+..... ....++|+||||||+|+...+ .+..+++..++..+++ .|++|||++|+||+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKG-NNIEKIPIMLVGNKCDESHKR-EVSSNEGAACATEWNC-AFMETSAKTNHNVQEL 156 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhc-CCCCCCCEEEEEECccccccC-eecHHHHHHHHHHhCC-cEEEeecCCCCCHHHH
Confidence 999999999999999988876532 123579999999999997655 5677788888888885 7999999999999999
Q ss_pred HHHHHH
Q psy4094 619 AKTLVQ 624 (663)
Q Consensus 619 Fe~IIr 624 (663)
|++|++
T Consensus 157 f~~l~~ 162 (165)
T cd04140 157 FQELLN 162 (165)
T ss_pred HHHHHh
Confidence 999975
No 68
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=1.3e-27 Score=223.12 Aligned_cols=161 Identities=29% Similarity=0.525 Sum_probs=141.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+.+.|.+.+.++.+.++....+.+++. .+.++||||+|+++|..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGK-TILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCE-EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 58999999999999999999999999888888888887777777765 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+... ..++|+|||+||+|+... ..+++..++..++ +++|++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~-----~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREY-----RPEIPCIVVANKIDLDPS----VTQKKFNFAEKHN-LPLYYVSAADGTNVVKL 149 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-----CCCCcEEEEEECccCchh----HHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 9999999999999999999754 246899999999998532 2345666777777 48999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy4094 619 AKTLVQKILEND 630 (663)
Q Consensus 619 Fe~IIr~Ile~~ 630 (663)
|+.+++.+++++
T Consensus 150 ~~~l~~~~~~~~ 161 (161)
T cd04124 150 FQDAIKLAVSYK 161 (161)
T ss_pred HHHHHHHHHhcC
Confidence 999999988763
No 69
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=1.5e-27 Score=219.38 Aligned_cols=162 Identities=30% Similarity=0.514 Sum_probs=141.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+++|||+|+++|..++..+++++|++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQ-WAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCE-EEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 38999999999999999999999988888888887444 455666665 6889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||+++..+|+.+..|+..+.... ...++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|.||++
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVK---DRDEFPMILVGNKADLEHQR-KVSREEGQELARKLKI-PYIETSAKDRLNVDK 154 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh---CCCCCCEEEEeeCccccccc-eecHHHHHHHHHHcCC-cEEEeeCCCCCCHHH
Confidence 999999999999999999887642 23568999999999997655 5667788889988885 899999999999999
Q ss_pred HHHHHHHHH
Q psy4094 618 AAKTLVQKI 626 (663)
Q Consensus 618 LFe~IIr~I 626 (663)
+|++|++.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 70
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=7.5e-28 Score=224.85 Aligned_cols=161 Identities=22% Similarity=0.385 Sum_probs=141.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEe
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD 540 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyD 540 (663)
|+|+|+.|||||||+++|+++.|...+.++++..+ ...+.+++. .+.++||||+|+++|..++..+++++|++|||||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGK-PVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCE-EEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence 68999999999999999999999988888887554 456667765 6899999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 541 VTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 541 VTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
++++.+|+.+. .|+..+..+ ..++|+||||||+|+...+ ..+..+++.++++.+++..|++||
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 153 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHF-----CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS 153 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 99999999996 699988753 2469999999999996532 237788899999999976899999
Q ss_pred CCCCcCHHHHHHHHHHHHHh
Q psy4094 609 AKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile 628 (663)
|++|.||+++|+.|++.++.
T Consensus 154 a~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 154 ALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999998754
No 71
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=2.2e-27 Score=219.86 Aligned_cols=170 Identities=35% Similarity=0.658 Sum_probs=151.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|.+..+...+.++++.++..+.+.+.+. .+.|.+||++|++.|..++..+++++|++|+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDK-LVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCE-EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 58999999999999999999999998888999999998888888876 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|...+...+......++|+++|+||+|+...+ .+..+++..++...+...++++||++|.|++++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR-QVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccc-ccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 9999999999999999887765543344579999999999997543 466788888998888678999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy4094 619 AKTLVQKILEND 630 (663)
Q Consensus 619 Fe~IIr~Ile~~ 630 (663)
|++|++.++++.
T Consensus 159 ~~~i~~~~~~~~ 170 (172)
T cd01862 159 FETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHhcc
Confidence 999999988763
No 72
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=2.2e-27 Score=219.30 Aligned_cols=161 Identities=25% Similarity=0.510 Sum_probs=142.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC--CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ--FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~--~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
+||+|+|++|||||||+++|..+ .|..++.+++|.++..+.+.+++...+.+++||++|++.+..++..+++++|++|
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 6888999999999988888876544799999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|..+..|+..+.... .++|+|||+||+|+.... .+...++..++..+++ .|++|||++|.||+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 153 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADKA-EVTDAQAQAFAQANQL-KFFKTSALRGVGYE 153 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccccccc-CCCHHHHHHHHHHcCC-eEEEEeCCCCCChH
Confidence 9999999999999999999988642 458999999999997654 5666667777777774 79999999999999
Q ss_pred HHHHHHHHHH
Q psy4094 617 DAAKTLVQKI 626 (663)
Q Consensus 617 ELFe~IIr~I 626 (663)
++|++|++.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04101 154 EPFESLARAF 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 73
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=2.6e-27 Score=217.32 Aligned_cols=163 Identities=38% Similarity=0.728 Sum_probs=148.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|.+..+...+.++++.++....+.+++. .+.+++||++|+++|..++..+++++|++|+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGK-RVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 59999999999999999999999998889999999998888888776 67899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+..+. ..++|+++|+||+|+...+ .+..+.+..++..+++ .|+++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~----~~~~pivvv~nK~D~~~~~-~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYA----DPNVVIMLVGNKSDLEDQR-QVSREEAEAFAEEHGL-PFFETSAKTNTNVEEA 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEEchhccccc-CCCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 99999999999999999988652 2579999999999987654 5677888899988885 7999999999999999
Q ss_pred HHHHHHHHHh
Q psy4094 619 AKTLVQKILE 628 (663)
Q Consensus 619 Fe~IIr~Ile 628 (663)
|++|++++.+
T Consensus 154 ~~~i~~~~~~ 163 (164)
T smart00175 154 FEELAREILK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998865
No 74
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.1e-27 Score=226.89 Aligned_cols=165 Identities=18% Similarity=0.246 Sum_probs=144.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
+..+||+|||++|||||||+++|+++.|. ..|.+|++.++....+.+++. .+.+++||++|++.+..++..+|+++|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~-~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQ-EKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCe-EEEEEEEecCCcccccccchhhhhcCCE
Confidence 35699999999999999999999999998 889999999988888888876 6889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+.. ..++|+|+|+||+|+...+ .+...++.+++..+++..++++||++|.|
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQQ-QRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEcccccccc-cccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 9999999999999999999886642 2369999999999996544 33344567788888865579999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy4094 615 IDDAAKTLVQKILE 628 (663)
Q Consensus 615 VeELFe~IIr~Ile 628 (663)
++++|+.|++.++.
T Consensus 154 v~~lf~~l~~~~~~ 167 (169)
T cd01892 154 SNELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998763
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=1.8e-27 Score=234.73 Aligned_cols=158 Identities=34% Similarity=0.569 Sum_probs=140.7
Q ss_pred EeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC
Q psy4094 464 IGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR 543 (663)
Q Consensus 464 LGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd 543 (663)
||+.|||||||+++|+.+.|...+.+|+|.++....+.+++. .+.|.||||+|+++|+.++..||+++|++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~-~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCE-EEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 699999999999999999998899999999999888888875 7999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Q psy4094 544 AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLV 623 (663)
Q Consensus 544 ~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~II 623 (663)
+.+|+.+..|+..+..++ .++|+||||||+|+... .+..+. ..++...++ .||+|||++|.||+++|.+|+
T Consensus 80 ~~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~--~v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 80 RVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKDR--KVKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred hHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999998753 46999999999999643 344444 467777774 799999999999999999999
Q ss_pred HHHHhhhh
Q psy4094 624 QKILENDK 631 (663)
Q Consensus 624 r~Ile~~k 631 (663)
+.+....+
T Consensus 151 ~~i~~~~~ 158 (200)
T smart00176 151 RKLIGDPN 158 (200)
T ss_pred HHHHhccc
Confidence 99977644
No 76
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.95 E-value=1.9e-27 Score=224.31 Aligned_cols=156 Identities=19% Similarity=0.301 Sum_probs=132.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|||+.|||||||+.+|+.+.|...+.++ +.+| ...+.+++. .+.++|||++|++. ..+++++|++|+|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~-~~~l~i~D~~g~~~-----~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQ-SHLLLIRDEGGAPD-----AQFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCE-EEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence 58999999999999999999999888776554 3344 467888876 78899999999975 3577899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
||++++.+|+++..|+..+..+. ...++|+||||||+|+.. ..+.+..+++.++++.++.+.|+||||++|+||++
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~ 149 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYR---NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVER 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHH
Confidence 99999999999999999998653 235689999999999863 22368888899999887545899999999999999
Q ss_pred HHHHHHHH
Q psy4094 618 AAKTLVQK 625 (663)
Q Consensus 618 LFe~IIr~ 625 (663)
+|..+++.
T Consensus 150 ~f~~~~~~ 157 (158)
T cd04103 150 VFQEAAQK 157 (158)
T ss_pred HHHHHHhh
Confidence 99999865
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.6e-27 Score=233.59 Aligned_cols=158 Identities=20% Similarity=0.289 Sum_probs=131.2
Q ss_pred eEEEEEeCCCCCHHHHHH-HHHhC-----CCCCccccceee-eceeEE--------EecCCceeEEEEEEeCCCccchhh
Q psy4094 459 YKILVIGELGAGKTSIIK-RYVHQ-----FFSPHYRATIGV-DFALKV--------LSWDHETIIRLQLWDIAGQERFGN 523 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLIn-rLlg~-----~fsee~~~Tigi-Df~~kt--------V~vdge~~vkLqIwDTpGQErfrs 523 (663)
+||+|||+.|||||||+. ++.++ .|...|.+|++. +.+... +.+++. .+.|+||||+|+++ .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~-~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGV-SVSLRLWDTFGDHD--K 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCE-EEEEEEEeCCCChh--h
Confidence 799999999999999995 66544 345678899873 433322 245665 79999999999975 3
Q ss_pred hHHHHHhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC------------------C
Q psy4094 524 MTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE------------------G 584 (663)
Q Consensus 524 l~~~~~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de------------------r 584 (663)
+...+|++||++|+|||++++.||+.+. .|+..+..++ .++|+||||||+||.+. .
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 5567899999999999999999999997 6999887642 46899999999999641 2
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 585 IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 585 ~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
+.+..++++++|+.+++ .|+||||++|+||+++|+.++++
T Consensus 155 ~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 155 DILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 47889999999999996 89999999999999999999874
No 78
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=5.2e-27 Score=215.66 Aligned_cols=160 Identities=35% Similarity=0.598 Sum_probs=144.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++. .+.+++||++|+++|..++..+++.+|++|+|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDK-TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999999899999999999999988875 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+... ...++|+|||+||+|+...+ .+..++...+++..+ +.++++||+++.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDE----RGNDVIIVLVGNKTDLSDKR-QVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL 153 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEEEChhccccC-ccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence 9999999999999999988753 22369999999999996544 567788888888888 47999999999999999
Q ss_pred HHHHHHH
Q psy4094 619 AKTLVQK 625 (663)
Q Consensus 619 Fe~IIr~ 625 (663)
|.+|++.
T Consensus 154 ~~~i~~~ 160 (161)
T cd01861 154 FRKIASA 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 79
>KOG0083|consensus
Probab=99.95 E-value=6.1e-29 Score=232.83 Aligned_cols=162 Identities=29% Similarity=0.579 Sum_probs=150.6
Q ss_pred EEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEe
Q psy4094 462 LVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD 540 (663)
Q Consensus 462 VVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyD 540 (663)
+++|++++|||+|+-||..+.|. .....|+|+||..+.+.+++. .++|+||||+||++|++....||+.||+.+++||
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~-kvklqiwdtagqerfrsvt~ayyrda~allllyd 79 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDK-KVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD 79 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCc-EEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence 47999999999999999988776 578899999999999999997 8999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHH
Q psy4094 541 VTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620 (663)
Q Consensus 541 VTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe 620 (663)
++|+.||++++.|+.+|.++. ...+.++|+|||+|+..+| .+..++++.++..+++ +|+|+||++|.||+..|.
T Consensus 80 iankasfdn~~~wlsei~ey~----k~~v~l~llgnk~d~a~er-~v~~ddg~kla~~y~i-pfmetsaktg~nvd~af~ 153 (192)
T KOG0083|consen 80 IANKASFDNCQAWLSEIHEYA----KEAVALMLLGNKCDLAHER-AVKRDDGEKLAEAYGI-PFMETSAKTGFNVDLAFL 153 (192)
T ss_pred cccchhHHHHHHHHHHHHHHH----HhhHhHhhhccccccchhh-ccccchHHHHHHHHCC-CceeccccccccHhHHHH
Confidence 999999999999999999873 4568899999999998888 7888999999999995 899999999999999999
Q ss_pred HHHHHHHhhh
Q psy4094 621 TLVQKILEND 630 (663)
Q Consensus 621 ~IIr~Ile~~ 630 (663)
.|++.+....
T Consensus 154 ~ia~~l~k~~ 163 (192)
T KOG0083|consen 154 AIAEELKKLK 163 (192)
T ss_pred HHHHHHHHhc
Confidence 9999887654
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.95 E-value=4e-27 Score=221.95 Aligned_cols=159 Identities=23% Similarity=0.379 Sum_probs=139.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+.+|+++.|..++.+|+. +++...+.+++. .+.++|||++|+++|..++..+++++|++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGK-PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCE-EEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 5899999999999999999999999988888874 566667777765 78999999999999999999999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ffE 606 (663)
||++++.+|+.+. .|+..+... ..++|+||||||+|+... .+.+..+++..++..++...|++
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 153 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKH-----NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE 153 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence 9999999999985 798888743 246899999999998642 23678889999999998768999
Q ss_pred EeCCCCcCHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr 624 (663)
|||++|+||+++|+.++-
T Consensus 154 ~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 154 CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EeCCCCCCHHHHHHHHHh
Confidence 999999999999998864
No 81
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=4.8e-27 Score=219.43 Aligned_cols=162 Identities=22% Similarity=0.329 Sum_probs=141.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+.+.|...+.++++. .+...+.+++. .+.+.|||++|+++|..++..+++++|++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGK-QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCE-EEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 58999999999999999999999998888888763 44556677765 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE 606 (663)
||++++.+|+.+. .|+..+... ..++|+||||||+|+.++. ..+..+++..+++.+++..|++
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 153 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVE 153 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999996 688888743 3579999999999986532 2567788999999999778999
Q ss_pred EeCCCCcCHHHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Il 627 (663)
|||++|.||+++|+.+++.++
T Consensus 154 ~Sa~~~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 154 CSALTQKGLKTVFDEAILAIL 174 (174)
T ss_pred ecCCcCCCHHHHHHHHHHHhC
Confidence 999999999999999998763
No 82
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=1.1e-26 Score=213.84 Aligned_cols=161 Identities=29% Similarity=0.596 Sum_probs=146.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++. .+.+.|||++|+++|..++..+++++|++|||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDT-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 79999999999999999999999998888999998888888888876 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||+++..+|+.+..|+..+.... ..++|+|+|+||+|+...+ .+..+++..++..++ +.++++||++|.|+.++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA----SPNIIIALVGNKADLESKR-QVSTEEAQEYADENG-LLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccC-cCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 99999999999999999988642 2579999999999987654 567788889999888 58999999999999999
Q ss_pred HHHHHHHH
Q psy4094 619 AKTLVQKI 626 (663)
Q Consensus 619 Fe~IIr~I 626 (663)
|++|++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=1.2e-26 Score=217.41 Aligned_cols=163 Identities=28% Similarity=0.455 Sum_probs=144.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|.+|||||||+++|.++.+...+.++++.. ..+.+.+++. .+.+++||++|+++|..++..+++.++++|||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGR-QCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCE-EEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 799999999999999999999999988888888754 4667777765 68999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|...+.... ...++|+|+|+||+|+...+ .+..+++..+++.++.++|+++||++|.|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIK---DSDNVPMVLVGNKADLEDDR-QVSREDGVSLSQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh---CCCCCCEEEEEEChhccccC-ccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence 99999999999999999887642 23579999999999997665 567778888888888668999999999999999
Q ss_pred HHHHHHHHH
Q psy4094 619 AKTLVQKIL 627 (663)
Q Consensus 619 Fe~IIr~Il 627 (663)
|.+|+.+++
T Consensus 156 f~~i~~~~~ 164 (168)
T cd04177 156 FIDLVRQII 164 (168)
T ss_pred HHHHHHHHh
Confidence 999998764
No 84
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=8.5e-27 Score=228.50 Aligned_cols=171 Identities=20% Similarity=0.291 Sum_probs=142.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYYK 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~r 530 (663)
+||+|+|++|||||||+++|+++.|...+.++++.+++...+.+++. .+.++||||+|+..|. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~-~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGR-VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCE-EEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 58999999999999999999999999889999988887777777775 6899999999976542 12345678
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
++|++|||||++++.+|+.+..|+..+..+.. ....++|+||||||+|+...+ .+..++++.++.....++||+|||+
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-~~~~~~piiivgNK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRP-AGNKEPPIVVVGNKRDQQRHR-FAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEEECccccccc-cccHHHHHHHHHHhcCCcEEEecCC
Confidence 99999999999999999999999998876431 123569999999999997765 5666777777654433589999999
Q ss_pred CCcCHHHHHHHHHHHHHhhhhh
Q psy4094 611 DNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile~~k~ 632 (663)
+|.||+++|+.+++.++.+.+.
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 158 YNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCHHHHHHHHHHHhhccCCC
Confidence 9999999999999999876553
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=8.6e-27 Score=236.91 Aligned_cols=165 Identities=25% Similarity=0.447 Sum_probs=143.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|||+.|||||||+++|+++.|...|.+|++ ++..+.+.+++. .+.|+||||+|++.|..++..++..+|++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~-~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGE-VYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCE-EEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 5899999999999999999999999888999987 777788888876 78999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCC-----CCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTL-----PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~-----~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
||++++.+|+.+..|+.++...... ....++|+|||+||+|+...+ .+..+++.+++.....+.|++|||++|.
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~-~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR-EVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc-ccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 9999999999999999988754110 123579999999999997655 6778888888875544579999999999
Q ss_pred CHHHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQKI 626 (663)
Q Consensus 614 NVeELFe~IIr~I 626 (663)
||+++|++|++.+
T Consensus 158 gI~elf~~L~~~~ 170 (247)
T cd04143 158 NLDEMFRALFSLA 170 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999865
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=2.2e-26 Score=209.82 Aligned_cols=161 Identities=33% Similarity=0.575 Sum_probs=143.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|.+|||||||+++|+++.+...+.++++.++....+.+.+. .+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGK-RIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCE-EEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 59999999999999999999999988888888887877777777664 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+..... .++|+|+|+||+|+...+ .+..+++.+++..+++ .+++|||++++|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~-~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMRG----NNISLVIVGNKIDLERQR-VVSKSEAEEYAKSVGA-KHFETSAKTGKGIEEL 153 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECccccccc-CCCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 999999999999999999986532 379999999999998655 5667888888888885 7999999999999999
Q ss_pred HHHHHHHH
Q psy4094 619 AKTLVQKI 626 (663)
Q Consensus 619 Fe~IIr~I 626 (663)
|++|++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04123 154 FLSLAKRM 161 (162)
T ss_pred HHHHHHHh
Confidence 99998875
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=1.7e-26 Score=214.84 Aligned_cols=162 Identities=23% Similarity=0.365 Sum_probs=137.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-hhhhHHHHHhcCcEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-FGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-frsl~~~~~r~ADgaILV 538 (663)
||+|+|++|||||||+++|+.+.+...+.++++..+ ...+.+++. .+.++|||++|+++ +...+..+++.+|++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGE-QVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCE-EEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 699999999999999999999888888888876444 455667765 68899999999986 355678899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC-cCHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN-INIDD 617 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG-eNVeE 617 (663)
||++++.+|+.+..|+..+..... ...++|+||||||+|+...+ .+..+++..++..+++ +||+|||++| .||++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHYR-QVSTEEGEKLASELGC-LFFEVSAAEDYDGVHS 154 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHhC-ccCHHHHHHHHHHcCC-EEEEeCCCCCchhHHH
Confidence 999999999999999998886421 13469999999999997655 6778888999999884 8999999999 59999
Q ss_pred HHHHHHHHHH
Q psy4094 618 AAKTLVQKIL 627 (663)
Q Consensus 618 LFe~IIr~Il 627 (663)
+|.+|++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=2.5e-26 Score=228.50 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=143.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh-cCcEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK-EAVGAF 536 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r-~ADgaI 536 (663)
+||+|+|++|||||||+++|+.+.+. ..+.++++.+++.+.+.+++. .+.+.|||++|++ ..+...+++ ++|++|
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~-~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGE-ESTLVVIDHWEQE--MWTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCE-EEEEEEEeCCCcc--hHHHhHHhhcCCCEEE
Confidence 58999999999999999999988886 777888877888888888876 7899999999998 334556677 999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+...+ .+..+++.+++..+++ .|++|||++|+||+
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~~-~v~~~~~~~~a~~~~~-~~~e~SA~~~~gv~ 152 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNR---QLEDRPIILVGNKSDLARSR-EVSVQEGRACAVVFDC-KFIETSAGLQHNVD 152 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhccccc-eecHHHHHHHHHHcCC-eEEEecCCCCCCHH
Confidence 9999999999999999999887642 23579999999999997765 6777888889988885 79999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy4094 617 DAAKTLVQKILENDKV 632 (663)
Q Consensus 617 ELFe~IIr~Ile~~k~ 632 (663)
++|++|++.+......
T Consensus 153 ~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 153 ELLEGIVRQIRLRRDS 168 (221)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999999999755543
No 89
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.94 E-value=3.4e-26 Score=213.93 Aligned_cols=161 Identities=20% Similarity=0.403 Sum_probs=138.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
.||+|+|+.|||||||+++|+.+.|...+.++++..+. ..+.+++. .+.+.||||+|+++|..++..++.++|++++|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGK-QVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCE-EEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 59999999999999999999999999889999886554 45666665 68899999999999999988899999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeEEE
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ffE 606 (663)
||++++.+|+.+. .|+..+... ..++|+|||+||+|+.... ..+...++++++..++...|++
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~ 154 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHF-----CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYME 154 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEE
Confidence 9999999999985 688888753 2468999999999986421 2355678889999888778999
Q ss_pred EeCCCCcCHHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~I 626 (663)
|||++|.||+++|.+|++.+
T Consensus 155 ~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 155 CSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred eccccCcCHHHHHHHHHHHh
Confidence 99999999999999998765
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=6.8e-26 Score=208.75 Aligned_cols=160 Identities=40% Similarity=0.670 Sum_probs=143.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|.+..+...+.++++.++....+.+++. .+.+++||++|++.|..++..+++++|++|+|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGK-KVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCE-EEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 58999999999999999999999988888999998888887777765 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|+.+..|+..+..+.. ..++|+++|+||+|+... .+..+++..++..+++ +|+++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~~~iv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYST---NNDIVKMLVGNKIDKENR--EVTREEGLKFARKHNM-LFIETSAKTRDGVQQA 153 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCC---CCCCcEEEEEECCccccc--ccCHHHHHHHHHHcCC-EEEEEecCCCCCHHHH
Confidence 999999999999999998887542 457999999999999732 4567888899998875 8999999999999999
Q ss_pred HHHHHHH
Q psy4094 619 AKTLVQK 625 (663)
Q Consensus 619 Fe~IIr~ 625 (663)
|+++++.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 91
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.1e-25 Score=208.99 Aligned_cols=164 Identities=34% Similarity=0.656 Sum_probs=144.3
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|++|||||||+++|..+.+...+.++++.++....+.+.+. .+.+.+||++|++.|...+..++..+|++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGE-KIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45689999999999999999999988888888899998988888888876 67899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+.... ..++|+|+|+||+|+...+ .+..+....+..... ..+++|||++|.|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~~~i~v~NK~D~~~~~-~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 157 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYA----NNKVITILVGNKIDLAERR-EVSQQRAEEFSDAQD-MYYLETSAKESDNV 157 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccc-ccCHHHHHHHHHHcC-CeEEEeeCCCCCCH
Confidence 99999999999999999999887542 3468999999999997655 566666777777666 57999999999999
Q ss_pred HHHHHHHHHHH
Q psy4094 616 DDAAKTLVQKI 626 (663)
Q Consensus 616 eELFe~IIr~I 626 (663)
+++|++|++.+
T Consensus 158 ~~l~~~i~~~~ 168 (169)
T cd04114 158 EKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 92
>KOG0395|consensus
Probab=99.94 E-value=2.3e-26 Score=227.29 Aligned_cols=167 Identities=28% Similarity=0.476 Sum_probs=154.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|.+|||||+|+.+|+.+.|.+.|.+|+. +++.+.+.++++ .+.|.|+||+|++.|..+...|++++|++++
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~-~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGE-VCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCE-EEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 48999999999999999999999999999999999 888999999976 8999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
||+++++.||+.+..|++.|.+. .....+|+||||||+||...| .|..+++++++...++ .|+|+||+.++||++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~---~~~~~~PivlVGNK~Dl~~~R-~V~~eeg~~la~~~~~-~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRV---KGRDDVPIILVGNKCDLERER-QVSEEEGKALARSWGC-AFIETSAKLNYNVDE 155 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh---hCcCCCCEEEEEEcccchhcc-ccCHHHHHHHHHhcCC-cEEEeeccCCcCHHH
Confidence 99999999999999999999542 344569999999999999887 8999999999999997 599999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy4094 618 AAKTLVQKILENDK 631 (663)
Q Consensus 618 LFe~IIr~Ile~~k 631 (663)
+|..|++.+...+.
T Consensus 156 ~F~~L~r~~~~~~~ 169 (196)
T KOG0395|consen 156 VFYELVREIRLPRE 169 (196)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999998877333
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=2.4e-25 Score=203.81 Aligned_cols=162 Identities=26% Similarity=0.461 Sum_probs=140.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+++|.+|||||||+++|+.+.+...+.++++.. ..+.+.+++. .+.+++||++|+++|..++..+++.++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGE-DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCE-EEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 599999999999999999999999888888887744 4455666665 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+|..+..|+..+..... ..++|+|+|+||+|+...+ .....+...++..+++ ++|++||++|.|++++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDKR-QVSSEEAANLARQWGV-PYVETSAKTRQNVEKA 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEcccccccc-ccCHHHHHHHHHHhCC-eEEEeeCCCCCCHHHH
Confidence 999999999999999998886432 3569999999999997643 4566777888888875 8999999999999999
Q ss_pred HHHHHHHHH
Q psy4094 619 AKTLVQKIL 627 (663)
Q Consensus 619 Fe~IIr~Il 627 (663)
|++|++.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T cd04139 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHH
Confidence 999998775
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=1.9e-25 Score=214.46 Aligned_cols=166 Identities=23% Similarity=0.362 Sum_probs=141.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
.||+|+|+.|||||||+++|..+.+...+.++++..+. ..+.+++. .+.+.+||++|++.|......+++++|++|+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGK-PVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCE-EEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 59999999999999999999988888888888765554 45566665 67899999999999988888889999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC---------CCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE---------GIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de---------r~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
||+++..+|+.+. .|+..+..+. .++|+||||||+|+... ...+..+++..+++.+++..||+||
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 154 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYC-----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS 154 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc
Confidence 9999999999997 6999887542 35999999999998542 2256677889999999977899999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 609 AKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile~~k 631 (663)
|++|.||+++|+++++.++..++
T Consensus 155 a~~~~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 155 ALTGEGVDDVFEAATRAALLVRK 177 (187)
T ss_pred CCCCCCHHHHHHHHHHHHhcccC
Confidence 99999999999999998866443
No 95
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=2.4e-25 Score=199.85 Aligned_cols=159 Identities=38% Similarity=0.704 Sum_probs=142.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|.+|||||||+++|.++.+...+.++.+.++....+.+++. .+.+.+||++|+..+..++..+++++|++|+|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGK-TVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCE-EEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999889999999999988888765 68899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||++++.+++.+..|+..+.... ..++|+++|+||+|+.... ....+++.+++..++ .+|+++||+++.|++++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEYA----PENIPIILVGNKIDLEDQR-QVSTEEAQQFAKENG-LLFFETSAKTGENVEEL 153 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEEcccccccc-cccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence 99999999999999999988642 2569999999999996333 567888999998877 48999999999999999
Q ss_pred HHHHHH
Q psy4094 619 AKTLVQ 624 (663)
Q Consensus 619 Fe~IIr 624 (663)
|.+|++
T Consensus 154 ~~~i~~ 159 (159)
T cd00154 154 FQSLAE 159 (159)
T ss_pred HHHHhC
Confidence 999863
No 96
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.93 E-value=2.2e-25 Score=210.19 Aligned_cols=160 Identities=18% Similarity=0.307 Sum_probs=132.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|+|+.|||||||+++|.++.+.. +.+|++.++. .+.+. .+.+++||++|+++++.++..+++++|++|+||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~---~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 74 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK---NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVV 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC---CEEEEEEECCCChhcchHHHHHhccCCEEEEEE
Confidence 68999999999999999999987754 7888887664 33333 478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-----CeEEEEeCCCCcC
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-----SGWFETSAKDNIN 614 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-----i~ffEtSAKtGeN 614 (663)
|++++.+|+.+..|+..+... ....+.|+|||+||+|+.+ .+..+++.+++...+. ..|++|||++|.|
T Consensus 75 D~s~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 75 DSSHRDRVSEAHSELAKLLTE---KELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred eCCcHHHHHHHHHHHHHHhcC---hhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 999999999999998888642 2234589999999999965 3567777777754331 2588999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy4094 615 IDDAAKTLVQKILENDK 631 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k 631 (663)
|+++|+||++.++....
T Consensus 149 v~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 149 LYEGLDWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999998877543
No 97
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=4.6e-25 Score=211.48 Aligned_cols=168 Identities=20% Similarity=0.298 Sum_probs=136.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+++|++|||||||+++|+.+.+... .+|+|.++....+.+.+...+.|.+|||+|+++|+.+|..++++||++|+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998887654 67888777666666543335889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-----CCeEEEEeCCCC
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-----FSGWFETSAKDN 612 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-----~i~ffEtSAKtG 612 (663)
|||+++..+++.+..|+..+..... ..++|+|||+||+|+... +..+++.+++.... .+.+++|||++|
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~---~~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 155 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSE---NQGVPVLVLANKQDLPNA---LSVSEVEKLLALHELSASTPWHVQPACAIIG 155 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhh---cCCCcEEEEEECcCcccc---CCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence 9999999999999999888775432 246899999999998652 34455555553221 135889999999
Q ss_pred cCHHHHHHHHHHHHHhhhhh
Q psy4094 613 INIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k~ 632 (663)
.||+++|++|++.+.+.++.
T Consensus 156 ~gi~~l~~~l~~~l~~~~~~ 175 (183)
T cd04152 156 EGLQEGLEKLYEMILKRRKM 175 (183)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999776653
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=2.7e-25 Score=210.76 Aligned_cols=155 Identities=20% Similarity=0.283 Sum_probs=126.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|++|||||||+++|..+.+. .+.+|+|.++. .+... .+.|+|||++|+++|+.++..+|++||++||
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYK---NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEEC---CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 489999999999999999999987775 46788887664 33332 4789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCc
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNI 613 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGe 613 (663)
|||+++..+|+.+..|+..+... ....++|+|||+||+|+... +..+++..++... ....+++|||++|+
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIIND---REMRDALLLVFANKQDLPDA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcC---HhhcCCcEEEEEECcCCccC---CCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 99999999999998887766532 12356899999999999652 4567777765421 11368999999999
Q ss_pred CHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQ 624 (663)
Q Consensus 614 NVeELFe~IIr 624 (663)
||+++|.||.+
T Consensus 157 gv~~~~~~l~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred ChHHHHHHHhc
Confidence 99999999975
No 99
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=6.4e-25 Score=211.42 Aligned_cols=161 Identities=21% Similarity=0.275 Sum_probs=127.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|..+.+. .+.+|+|.++. .+... .+.++|||++||++|+.+|..||+++|++|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~---~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC---CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 3489999999999999999999987775 56788887653 34333 378999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC----CeEEEEeCCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF----SGWFETSAKDN 612 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~----i~ffEtSAKtG 612 (663)
+|||+++..+|..+..|+..+.. .....++|+|||+||+|+.... ..+++...+..... ..+++|||++|
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~---~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g 163 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhc---CHhhCCCCEEEEEECCCCCCCC---CHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 99999999999998887776643 1123569999999999997632 34444433322211 13568999999
Q ss_pred cCHHHHHHHHHHHHHhh
Q psy4094 613 INIDDAAKTLVQKILEN 629 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~ 629 (663)
+||+++|+||++++..+
T Consensus 164 ~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 164 EGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999999987653
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=5.9e-25 Score=206.02 Aligned_cols=154 Identities=21% Similarity=0.291 Sum_probs=121.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|+.|||||||+++|..+.+. .+.+|+|.++. .+... .+.+.+||++|+++|+.++..||++||++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v 74 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 74 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999888776 57888886653 33332 47899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCcC
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNIN 614 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGeN 614 (663)
||++++.+|+.+..|+..+... ....++|++||+||+|+... +..+++...+... ....+++|||++|+|
T Consensus 75 ~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 75 VDSNDRERIGEAREELQRMLNE---DELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred EeCCCHHHHHHHHHHHHHHHhc---HHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999999998887766532 12245899999999999653 2333333332211 113578999999999
Q ss_pred HHHHHHHHHH
Q psy4094 615 IDDAAKTLVQ 624 (663)
Q Consensus 615 VeELFe~IIr 624 (663)
|+++|+||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=7.4e-25 Score=208.66 Aligned_cols=157 Identities=22% Similarity=0.288 Sum_probs=125.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|++|||||||+++|..+.+. .+.+|++.++.. +... .+.++|||++|+++++.+|..||++||++|+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~~---~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTYK---NISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEEC---CEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 489999999999999999999877774 577888877643 3332 3789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCCCc
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKDNI 613 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKtGe 613 (663)
|||++++.+|+.+..|+..+... ....++|++||+||+|+.+.. ..+++...+.... .+.|+++||++|.
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNE---DELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhC---HhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 99999999999999888877532 123468999999999997543 3334333332111 1247789999999
Q ss_pred CHHHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQKI 626 (663)
Q Consensus 614 NVeELFe~IIr~I 626 (663)
||+++|+||.+++
T Consensus 161 gv~e~~~~l~~~~ 173 (175)
T smart00177 161 GLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998875
No 102
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=1.2e-24 Score=198.02 Aligned_cols=160 Identities=34% Similarity=0.544 Sum_probs=140.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|+|++|||||||+++|++..+...+.++.+ +.....+.+++. .+.+++||++|++.+..++..+++.+|++|+||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGE-TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCE-EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 699999999999999999999888888888877 556666766654 688999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF 619 (663)
|+++..++..+..|+..+..... ..++|+++|+||+|+...+ .+..+++.+++..++ .+|+++||+++.|++++|
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKD---DEDIPIVLVGNKCDLENER-QVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF 153 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEECCcccccc-eecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence 99999999999999988886432 2579999999999997744 567788999999888 489999999999999999
Q ss_pred HHHHHHH
Q psy4094 620 KTLVQKI 626 (663)
Q Consensus 620 e~IIr~I 626 (663)
++|++++
T Consensus 154 ~~l~~~i 160 (160)
T cd00876 154 KLLVREI 160 (160)
T ss_pred HHHHhhC
Confidence 9998764
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=1.2e-24 Score=211.08 Aligned_cols=164 Identities=24% Similarity=0.385 Sum_probs=137.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|+|+.|||||||+++|+++.+...+.+++. ++....+.+.+. .+.++|||++|+..|..++..++..+|++||||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGV-SLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCE-EEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 699999999999999999999999888888875 566667777764 688999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF 619 (663)
|++++.+|+.+..|+..+.... ...++|+|||+||+|+......+..+++.+.+.......|+++||++|.||+++|
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVK---EDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence 9999999999999998887653 2346999999999999663224555555555542222479999999999999999
Q ss_pred HHHHHHHHh
Q psy4094 620 KTLVQKILE 628 (663)
Q Consensus 620 e~IIr~Ile 628 (663)
++|++.+..
T Consensus 156 ~~l~~~~~~ 164 (198)
T cd04147 156 KELLRQANL 164 (198)
T ss_pred HHHHHHhhc
Confidence 999998753
No 104
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.93 E-value=1.2e-24 Score=215.54 Aligned_cols=165 Identities=21% Similarity=0.374 Sum_probs=134.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC----ceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH----ETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg----e~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
+||+|+|+.|||||||+++|+++.|...+.+|+|.++..+.+.+++ +..+.|+|||++|+++|+.++..||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999999999999999888888777742 236899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCC---------------CCCCCCcEEEEEeCCCCCCCCCCCCHH----HHHHH
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTL---------------PDGNPIPCVLLANKCDQPKEGIANNPA----KIDEF 595 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~---------------~~~~~IPIILVGNKsDL~der~~Vs~e----ei~ql 595 (663)
+|||||++++.||+++..|+.++...... ....++||||||||+|+.+++ .+..+ ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r-~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK-ESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc-ccchHHHhhHhhhH
Confidence 99999999999999999999999764211 123569999999999997765 33333 24456
Q ss_pred HHHcCCCeEEEEeCCCCc----------CHHHHHHHHHHH
Q psy4094 596 IKEHNFSGWFETSAKDNI----------NIDDAAKTLVQK 625 (663)
Q Consensus 596 ak~~g~i~ffEtSAKtGe----------NVeELFe~IIr~ 625 (663)
+.+.++ +.++.++.++. .+..+|+.++++
T Consensus 160 a~~~~~-~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 160 AEQGNA-EEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HHhcCC-ceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 777885 78888888653 345555555543
No 105
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=2.6e-24 Score=210.89 Aligned_cols=166 Identities=30% Similarity=0.509 Sum_probs=144.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|++|||||||+++|+.+.+...|.+|++.++....+..+++ .+.+++||++|+++|..++..++++++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCG-PICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCe-EEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 34589999999999999999999999999999999999998888877765 68999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|..+..|+..+...+ .++|+++||||+|+.+.. +..+ ...++...++ .|+++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~i~lv~nK~Dl~~~~--~~~~-~~~~~~~~~~-~~~e~Sa~~~~~v 156 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLVGNKVDVKDRQ--VKAR-QITFHRKKNL-QYYDISAKSNYNF 156 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCcccc--CCHH-HHHHHHHcCC-EEEEEeCCCCCCH
Confidence 99999999999999999999988642 468999999999986532 3333 3456777774 7999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4094 616 DDAAKTLVQKILENDK 631 (663)
Q Consensus 616 eELFe~IIr~Ile~~k 631 (663)
+++|.+|++.++.+..
T Consensus 157 ~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 157 EKPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999876544
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=1.4e-24 Score=200.91 Aligned_cols=159 Identities=25% Similarity=0.443 Sum_probs=134.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|+++.+...+.+++...+ ...+.+++. .+.+++||++|+++|..++..+++.+|++++|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGK-QVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCE-EEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence 5899999999999999999999998777888876444 445555655 68999999999999988899999999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC----------CCCHHHHHHHHHHcCCCeEEEE
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI----------ANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~----------~Vs~eei~qlak~~g~i~ffEt 607 (663)
||++++.+|..+. .|+..+..+ ..++|+|||+||+|+...+. .+..+++..++..+++..|+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 153 (171)
T cd00157 79 FSVDSPSSFENVKTKWIPEIRHY-----CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMEC 153 (171)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEe
Confidence 9999999998865 587777643 23799999999999876541 3457788889999987689999
Q ss_pred eCCCCcCHHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr 624 (663)
||++|+|++++|++|++
T Consensus 154 Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 154 SALTQEGVKEVFEEAIR 170 (171)
T ss_pred ecCCCCCHHHHHHHHhh
Confidence 99999999999999875
No 107
>KOG0393|consensus
Probab=99.93 E-value=9.8e-26 Score=223.49 Aligned_cols=168 Identities=23% Similarity=0.361 Sum_probs=152.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecC-CceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWD-HETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vd-ge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
..+|++|||++++|||+|+..|..+.|.+.|.+|+. |-+...+.++ +. .+.|.+|||+||++|..++...|.++|++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~-~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGK-PVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCC-EEEEeeeecCCCcccccccccCCCCCCEE
Confidence 348999999999999999999999999999999998 6666778885 65 89999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCe
Q psy4094 536 FIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSG 603 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~ 603 (663)
|+||++.++.||+++. .|+.+++.+| +++|+||||+|.||.++. .-+..+++..+++..|...
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-----p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~ 155 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-----PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVK 155 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-----CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcce
Confidence 9999999999999975 9999999876 679999999999997421 2578899999999999999
Q ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 604 WFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 604 ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
|+||||++..|+.++|+..++.++...+
T Consensus 156 y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 156 YLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999999999987544
No 108
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.92 E-value=3.8e-24 Score=201.76 Aligned_cols=165 Identities=25% Similarity=0.414 Sum_probs=140.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
.||+|+|++|||||||+++|.+..+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..++..++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQ-DYHLEIVDTAGQDEYSILPQKYSIGIHGYILV 79 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCE-EEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence 6999999999999999999999888877888776544 455666654 57899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
||+++..+|+.+..|+..+.... ...++|+|||+||+|+...+ .+..+++..++..+++ +++++||+++.|+.++
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 80 YSVTSRKSFEVVKVIYDKILDML---GKESVPIVLVGNKSDLHTQR-QVSTEEGKELAESWGA-AFLESSARENENVEEA 154 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEchhhhhcC-ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHH
Confidence 99999999999999988877542 23568999999999997644 5566677888887774 7999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy4094 619 AKTLVQKILEND 630 (663)
Q Consensus 619 Fe~IIr~Ile~~ 630 (663)
|.+|++.+....
T Consensus 155 ~~~l~~~~~~~~ 166 (180)
T cd04137 155 FELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHhc
Confidence 999999886543
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=2e-24 Score=207.91 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=126.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|++|||||||+++|..+.+.. +.+|++.++. .+... .+.++|||++|+++++.++..||+++|++|+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK---NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC---CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4899999999999999999998877764 6788886654 33332 4789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCCCc
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKDNI 613 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKtGe 613 (663)
|||++++.+|+.+..|+..+.. .....++|+|||+||+|+.+. +..+++...+.... .+.++++||++|.
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLS---EDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHh---CHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 9999999999998877776642 112346899999999998653 23333333222111 1246799999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy4094 614 NIDDAAKTLVQKILEND 630 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~ 630 (663)
||+++|++|++.+...+
T Consensus 165 gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 165 GLYEGLDWLSANIKKSM 181 (182)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999887654
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.92 E-value=2.5e-24 Score=202.96 Aligned_cols=156 Identities=23% Similarity=0.313 Sum_probs=126.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|++|||||||+++|.+..+ ..+.+|+|.. ...+.+++ +.+.+||++|++.++.++..+++++|++|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~---~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYEG---YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEECC---EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 458999999999999999999998744 4567777743 44455542 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDN 612 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtG 612 (663)
+|||++++.+|..+..|+..+... ....++|+|||+||+|+.... ..+++..++... ..++||+|||++|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQE---ERLAGATLLILANKQDLPGAL---SEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhC---hhhcCCCEEEEEECcccccCC---CHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 999999999999998888877542 223579999999999997633 556666665432 2247999999999
Q ss_pred cCHHHHHHHHHH
Q psy4094 613 INIDDAAKTLVQ 624 (663)
Q Consensus 613 eNVeELFe~IIr 624 (663)
.||+++|++|+.
T Consensus 161 ~gi~~l~~~l~~ 172 (173)
T cd04154 161 EGLLQGIDWLVD 172 (173)
T ss_pred cCHHHHHHHHhc
Confidence 999999999874
No 111
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.92 E-value=5.1e-25 Score=207.75 Aligned_cols=152 Identities=22% Similarity=0.264 Sum_probs=125.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEe
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD 540 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyD 540 (663)
|+|+|+.|||||||+++|+++.+...+.+|+|.++ +.++.. .+.++|||++|+++|+.++..+++++|++|+|||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQ-DAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeC-CeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 79999999999999999999988888999988653 223333 4789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCH----HHHHHHHHHcCCCeEEEEeCCC-----
Q psy4094 541 VTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNP----AKIDEFIKEHNFSGWFETSAKD----- 611 (663)
Q Consensus 541 VTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~----eei~qlak~~g~i~ffEtSAKt----- 611 (663)
+++..+|..+..|+..+... ..++|+|||+||+|+...+ .+.. ..+..+++..+ +.||+|||++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~-----~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~ 149 (164)
T cd04162 77 SADSERLPLARQELHQLLQH-----PPDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRR-WILQGTSLDDDGSPS 149 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhC-----CCCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChh
Confidence 99999999999998877632 2579999999999997655 1111 12345555556 4789999888
Q ss_pred -CcCHHHHHHHHHH
Q psy4094 612 -NINIDDAAKTLVQ 624 (663)
Q Consensus 612 -GeNVeELFe~IIr 624 (663)
++||.++|+.++.
T Consensus 150 ~~~~v~~~~~~~~~ 163 (164)
T cd04162 150 RMEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHHhc
Confidence 9999999998874
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.92 E-value=9.4e-25 Score=200.48 Aligned_cols=156 Identities=22% Similarity=0.298 Sum_probs=121.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC-CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF-FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~-fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+|+|+|++|||||||+++|.+.. +...+.+|+|..+.. +... .+.+++||++|+++|+.++..+++++|++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FEKG---NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EEEC---CEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 58999999999999999999875 456778888855432 3222 47899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCcC
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNIN 614 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGeN 614 (663)
||++++.+|..+..|+..+..... ....++|+|||+||+|+.... ..+++....... ....+|+|||++|.|
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEG 151 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence 999999999999999888764311 123579999999999997643 233333322211 113589999999999
Q ss_pred HHHHHHHHHH
Q psy4094 615 IDDAAKTLVQ 624 (663)
Q Consensus 615 VeELFe~IIr 624 (663)
|+++|++|.+
T Consensus 152 v~~~~~~l~~ 161 (162)
T cd04157 152 LDEGVQWLQA 161 (162)
T ss_pred hHHHHHHHhc
Confidence 9999999875
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=5.7e-24 Score=199.26 Aligned_cols=162 Identities=20% Similarity=0.264 Sum_probs=126.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|+.|||||||+++|+++.|...+..+. .++ ...+.+++. .+.++|||++|++.+...+..++..+|++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPE-RVPTTIVDTSSRPQDRANLAAEIRKANVICLV 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCC-eEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence 489999999999999999999998876544332 222 333444444 68999999999999888888889999999999
Q ss_pred EeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHHHcC-CCeEEEEeCCCCcCH
Q psy4094 539 FDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN-NPAKIDEFIKEHN-FSGWFETSAKDNINI 615 (663)
Q Consensus 539 yDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V-s~eei~qlak~~g-~i~ffEtSAKtGeNV 615 (663)
||++++.+|+.+. .|+..++.+. .++|+|||+||+|+.+.+... ..+++..++..+. ...|++|||++|.|+
T Consensus 78 ~d~~~~~s~~~~~~~~~~~i~~~~-----~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 152 (166)
T cd01893 78 YSVDRPSTLERIRTKWLPLIRRLG-----VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINV 152 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCH
Confidence 9999999999985 6888887532 369999999999997655111 1334444444443 247999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy4094 616 DDAAKTLVQKILE 628 (663)
Q Consensus 616 eELFe~IIr~Ile 628 (663)
+++|+.+++.++.
T Consensus 153 ~~lf~~~~~~~~~ 165 (166)
T cd01893 153 SEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988764
No 114
>KOG4252|consensus
Probab=99.91 E-value=1.8e-25 Score=217.93 Aligned_cols=173 Identities=30% Similarity=0.541 Sum_probs=161.6
Q ss_pred CCCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc
Q psy4094 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE 531 (663)
Q Consensus 452 ~~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ 531 (663)
+.+.+..+|++|+|..+|||+|++++|+.+.|...|..+||++|..+.+.++++ .+.+.+||++||++|+.+...||++
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~E-dvr~mlWdtagqeEfDaItkAyyrg 92 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIE-DVRSMLWDTAGQEEFDAITKAYYRG 92 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHH-HHHHHHHHhccchhHHHHHHHHhcc
Confidence 356778899999999999999999999999999999999999999999999988 7889999999999999999999999
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
|.+++|||+-+|+.||+.+..|+..+...+ .++|.++|-||+||.++. .+...+++.+++...+ .++-+|++.
T Consensus 93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e~-----~~IPtV~vqNKIDlveds-~~~~~evE~lak~l~~-RlyRtSvke 165 (246)
T KOG4252|consen 93 AQASVLVFSTTDRYSFEATLEWYNKVQKET-----ERIPTVFVQNKIDLVEDS-QMDKGEVEGLAKKLHK-RLYRTSVKE 165 (246)
T ss_pred ccceEEEEecccHHHHHHHHHHHHHHHHHh-----ccCCeEEeeccchhhHhh-hcchHHHHHHHHHhhh-hhhhhhhhh
Confidence 999999999999999999999999998653 569999999999999887 7888999999999986 799999999
Q ss_pred CcCHHHHHHHHHHHHHhhhhh
Q psy4094 612 NINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~~k~ 632 (663)
..||.++|.+++..+..+++.
T Consensus 166 d~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 166 DFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999887764
No 115
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=1.3e-23 Score=202.90 Aligned_cols=144 Identities=34% Similarity=0.499 Sum_probs=128.9
Q ss_pred CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhh
Q psy4094 481 QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560 (663)
Q Consensus 481 ~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~ 560 (663)
+.|.+.|.+|+|.+|..+.+.+++. .+.|.||||+|+++|+.++..||++||++|||||++++.+|+.+..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~-~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEG-PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCE-EEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 4677889999999999998988886 799999999999999999999999999999999999999999999999988754
Q ss_pred cCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 561 ~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
. ..++|+||||||+||...+ .+..+++..++..+++ .|++|||++|.||+++|++|++.+.+...
T Consensus 82 ~----~~~~piilVgNK~DL~~~~-~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 82 R----GKDVIIALVGNKTDLGDLR-KVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred c----CCCCeEEEEEECccccccc-CCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 2 2468999999999997655 5788889999998886 79999999999999999999999977553
No 116
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=222.00 Aligned_cols=179 Identities=22% Similarity=0.406 Sum_probs=141.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC------------ceeEEEEEEeCCCccchhh
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH------------ETIIRLQLWDIAGQERFGN 523 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg------------e~~vkLqIwDTpGQErfrs 523 (663)
...+||+|||+.|||||||+++|+++.|...+.+|+|.++..+.+.+++ +..+.++||||+|+++|+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3458999999999999999999999999999999999999888777653 2368899999999999999
Q ss_pred hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCC--------CCCCCCcEEEEEeCCCCCCCC--CC---CCHH
Q psy4094 524 MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTL--------PDGNPIPCVLLANKCDQPKEG--IA---NNPA 590 (663)
Q Consensus 524 l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~--------~~~~~IPIILVGNKsDL~der--~~---Vs~e 590 (663)
++..||++++++|+|||++++.+|+.+..|+..+..+... ....++||||||||+||...+ +. +..+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 9999999999999999999999999999999999875321 012358999999999997643 12 3689
Q ss_pred HHHHHHHHcCCCeEE---------------EEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094 591 KIDEFIKEHNFSGWF---------------ETSAKDNINIDDAAKTLVQKILENDKVQA 634 (663)
Q Consensus 591 ei~qlak~~g~i~ff---------------EtSAKtGeNVeELFe~IIr~Ile~~k~~~ 634 (663)
+++++|..+++.+.- -+.|+.+.=-.|++....+.++.++-...
T Consensus 179 ~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (334)
T PLN00023 179 AARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSD 237 (334)
T ss_pred HHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcc
Confidence 999999999864321 23455554334455555555555554443
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=2.6e-23 Score=191.39 Aligned_cols=153 Identities=24% Similarity=0.373 Sum_probs=120.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
+|+|+|++|||||||+++|.+..+.. +.++++.++ ..+.+.+ .+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~ 75 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLEK--HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV 75 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeCC--ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999988764 467776554 3444443 478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH------HcCCCeEEEEeCCCCc
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK------EHNFSGWFETSAKDNI 613 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak------~~g~i~ffEtSAKtGe 613 (663)
|+++..+|..+..|+..+... ....++|+|||+||+|+... ...+++...+. ..+ .++++|||++|+
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 148 (160)
T cd04156 76 DSSDEARLDESQKELKHILKN---EHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRD-WYVQPCSAVTGE 148 (160)
T ss_pred ECCcHHHHHHHHHHHHHHHhc---hhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCc-EEEEecccccCC
Confidence 999999999998888777642 12256999999999998642 23333333221 122 368999999999
Q ss_pred CHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQ 624 (663)
Q Consensus 614 NVeELFe~IIr 624 (663)
||+++|++|++
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.90 E-value=3.8e-23 Score=191.58 Aligned_cols=154 Identities=23% Similarity=0.387 Sum_probs=122.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCC------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFF------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~f------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
+|+|+|+.|||||||+++|.+... ...+.++++.++.. +.+++ +.+.+||++|++.|..++..+++.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~ 75 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEVGN---ARLKFWDLGGQESLRSLWDKYYAECH 75 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEECC---EEEEEEECCCChhhHHHHHHHhCCCC
Confidence 589999999999999999986422 33556777766643 44443 68999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc------CCCeEEEE
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH------NFSGWFET 607 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~------g~i~ffEt 607 (663)
++|+|||+++..++..+..|+..+... ....++|+|||+||+|+... +..+++..+.... ...+++++
T Consensus 76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 76 AIIYVIDSTDRERFEESKSALEKVLRN---EALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred EEEEEEECchHHHHHHHHHHHHHHHhC---hhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEe
Confidence 999999999999999988888777642 22357999999999998653 3455555555432 12479999
Q ss_pred eCCCCcCHHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr 624 (663)
||++|.|++++|+||++
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999975
No 119
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.90 E-value=4.3e-23 Score=194.85 Aligned_cols=153 Identities=23% Similarity=0.303 Sum_probs=123.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
+|+|+|.+|||||||+++|.+. +...+.+|+|.. ...+.+. .+.+++||++|+++++.++..||++||++|+||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~ 74 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD---KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVV 74 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC---CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEE
Confidence 4899999999999999999977 777888888865 3344443 378999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH------HHHHHcCC-CeEEEEeCCCC
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID------EFIKEHNF-SGWFETSAKDN 612 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~------qlak~~g~-i~ffEtSAKtG 612 (663)
|+++..+|+.+..|+..+... ....++|+|||+||+|+...+ ...++. +++...+. +.+++|||++|
T Consensus 75 D~s~~~s~~~~~~~l~~l~~~---~~~~~~piliv~NK~Dl~~~~---~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 75 DSSDDDRVQEVKEILRELLQH---PRVSGKPILVLANKQDKKNAL---LGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred ECCchhHHHHHHHHHHHHHcC---ccccCCcEEEEEeCCCCcCCC---CHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 999999999999999888743 223578999999999997754 222222 23322332 36788999998
Q ss_pred ------cCHHHHHHHHHH
Q psy4094 613 ------INIDDAAKTLVQ 624 (663)
Q Consensus 613 ------eNVeELFe~IIr 624 (663)
.|+.+.|+||+.
T Consensus 149 ~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 149 LGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCccccCHHHHHHHHhc
Confidence 899999999974
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.90 E-value=5.1e-23 Score=196.10 Aligned_cols=158 Identities=20% Similarity=0.258 Sum_probs=128.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|.++.+. .+.++++... ..+.+++ +.+.+||++|+++++.+|..+++++|++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~---~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN---IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 3589999999999999999999988774 4666766433 3455543 57999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc---------------CC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH---------------NF 601 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~---------------g~ 601 (663)
+|||+++..+|.....|+..+... ....+.|+|||+||+|+.. .+..+++++++..+ ..
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~---~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSD---EELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcC---ccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCcee
Confidence 999999999999888888877642 2235699999999999865 35667777777532 12
Q ss_pred CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 602 SGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 602 i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
+.+++|||++|+|++++|+||++.+
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhhC
Confidence 4689999999999999999998753
No 121
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=6.8e-23 Score=194.43 Aligned_cols=154 Identities=24% Similarity=0.328 Sum_probs=122.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|++|||||||+++|..+.+.. +.++++.++.. +.++ .+.+.+||++|+++|...+..+++++|++|+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVYK---NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEEC---CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 4799999999999999999999887764 57788766543 3333 3689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HcCCCeEEEEeCCCC
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-----EHNFSGWFETSAKDN 612 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-----~~g~i~ffEtSAKtG 612 (663)
|||++++.+|..+..|+..+..+ ....++|++||+||+|+... ...+++.+.+. ..+ +.+++|||++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~---~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~-~~~~~~SA~~g 161 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAH---EDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHT-WHIQGCCALTG 161 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhc---hhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCc-eEEEecccCCC
Confidence 99999999999888777766532 22356999999999998652 23444333222 223 36899999999
Q ss_pred cCHHHHHHHHHH
Q psy4094 613 INIDDAAKTLVQ 624 (663)
Q Consensus 613 eNVeELFe~IIr 624 (663)
.||+++|++|++
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999975
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.90 E-value=8.6e-23 Score=189.14 Aligned_cols=153 Identities=25% Similarity=0.332 Sum_probs=116.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|+|+++||||||+++|..+.+. .+.++++.++. .+.+. .+.++|||++|+++|+.++..++..+|++|+||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~ 74 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTYK---NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV 74 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEEC---CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 6899999999999999999877665 45677775543 33332 368999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCCCcCH
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKDNINI 615 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKtGeNV 615 (663)
|++++.++..+..|+..+... ....++|+|||+||+|+.... ...++...+.... ..++|+|||++|.||
T Consensus 75 d~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 75 DSTDRDRLGTAKEELHAMLEE---EELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhc---hhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 999998888776666544321 122468999999999996532 2333322221111 136999999999999
Q ss_pred HHHHHHHHH
Q psy4094 616 DDAAKTLVQ 624 (663)
Q Consensus 616 eELFe~IIr 624 (663)
+++|++|++
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999975
No 123
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=2.2e-22 Score=188.85 Aligned_cols=155 Identities=18% Similarity=0.284 Sum_probs=117.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC-------CCCcccc------ceeeeceeEEEec-----CCceeEEEEEEeCCCccch
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF-------FSPHYRA------TIGVDFALKVLSW-----DHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~-------fsee~~~------TigiDf~~ktV~v-----dge~~vkLqIwDTpGQErf 521 (663)
+|+|||+.+||||||+++|++.. +...+.. +.|+.+....+.+ ++. .+.++||||+|+++|
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQ-EYLLNLIDTPGHVDF 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCC-cEEEEEEECCCChhh
Confidence 79999999999999999998732 2222322 2244444433332 343 688999999999999
Q ss_pred hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy4094 522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF 601 (663)
Q Consensus 522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~ 601 (663)
..++..+++.+|++|+|||+++..+++.+..|..... .++|+|+|+||+|+.... ..+...+++..+++
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~ 149 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--------NNLEIIPVINKIDLPSAD---PERVKQQIEDVLGL 149 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--------cCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCC
Confidence 9999999999999999999999888888777754332 358999999999986532 22334556666664
Q ss_pred --CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 602 --SGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 602 --i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
..+|++||++|.||+++|++|++.+
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 2489999999999999999998865
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.89 E-value=2e-22 Score=185.51 Aligned_cols=153 Identities=22% Similarity=0.329 Sum_probs=123.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
||+|+|..|||||||++++++..+ ..+.++++..+. .+.+. .+.+.+||++|++.|..++..++..+|++|+||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 74 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK---NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV 74 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC---CEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence 699999999999999999998873 456667765543 34443 368999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCCcCH
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKDNINI 615 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKtGeNV 615 (663)
|++++.+|..+..|+..+.... ...+.|+|+|+||+|+.... ..++..+.+... ..++++++||++|.|+
T Consensus 75 D~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 75 DSSDRERIEEAKEELHKLLNEE---ELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 9999999999999888777542 23579999999999987643 334444443322 2357999999999999
Q ss_pred HHHHHHHHH
Q psy4094 616 DDAAKTLVQ 624 (663)
Q Consensus 616 eELFe~IIr 624 (663)
+++|++|+.
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999875
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.89 E-value=4.9e-22 Score=178.87 Aligned_cols=153 Identities=25% Similarity=0.371 Sum_probs=122.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEe
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD 540 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyD 540 (663)
|+|+|++|||||||+++|.+..+...+.++++.++.. +... .+.+.+||++|++.|+.++..++..+|++|+|||
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG---NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC---CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 8999999999999999999999999999999877653 3332 2789999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----cCCCeEEEEeCCCCcCHH
Q psy4094 541 VTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE----HNFSGWFETSAKDNINID 616 (663)
Q Consensus 541 VTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~----~g~i~ffEtSAKtGeNVe 616 (663)
+++..+|..+..|+..+... ....++|+++|+||+|+.... ..+++...... ....+++++||++|.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (159)
T cd04159 77 AADRTALEAAKNELHDLLEK---PSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNID 150 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcC---hhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence 99999999888887776542 223568999999999986543 22222222211 111478999999999999
Q ss_pred HHHHHHHH
Q psy4094 617 DAAKTLVQ 624 (663)
Q Consensus 617 ELFe~IIr 624 (663)
++|++|++
T Consensus 151 ~l~~~l~~ 158 (159)
T cd04159 151 IVLDWLIK 158 (159)
T ss_pred HHHHHHhh
Confidence 99999975
No 126
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=189.93 Aligned_cols=168 Identities=32% Similarity=0.454 Sum_probs=140.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|++|||||||+++|..+.+...+.++++..+....+...+. .+.+.+|||+||++|+.++..|+.+++++++|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-NIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 89999999999999999999999999999999998988888877765 68999999999999999999999999999999
Q ss_pred EeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHc--CCCeE
Q psy4094 539 FDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEH--NFSGW 604 (663)
Q Consensus 539 yDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~--g~i~f 604 (663)
||.++ ..+++....|...+.... ..+.|+|+|+||+|+..++ ...........+... ....+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~----~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELA----PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhC----CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 99999 566777789999988642 2469999999999998764 123333333333333 12238
Q ss_pred EEEeCC--CCcCHHHHHHHHHHHHHhhhh
Q psy4094 605 FETSAK--DNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 605 fEtSAK--tGeNVeELFe~IIr~Ile~~k 631 (663)
++||++ .+.||.++|..+++.+.....
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999999 999999999999999976543
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.88 E-value=6.3e-22 Score=190.29 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=123.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..++|+|+|.+|||||||+++|.++.+. .+.+|.+... ..+.+.+ +.+.+||++|+.+++.++..++.++|++|
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~---~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIGN---IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4489999999999999999999988664 3455554332 3333332 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-----------CCCeEE
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-----------NFSGWF 605 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-----------g~i~ff 605 (663)
+|||++++.+|.....|+..+... ....++|+|||+||+|+.. .+..+++...+... ....++
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~---~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSD---EELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcC---hhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999999988888776532 1235689999999999864 34566665544221 234589
Q ss_pred EEeCCCCcCHHHHHHHHHHH
Q psy4094 606 ETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~ 625 (663)
+|||++|+|++++++||+.+
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999865
No 128
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.88 E-value=2.1e-21 Score=172.35 Aligned_cols=156 Identities=24% Similarity=0.413 Sum_probs=131.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|.+|+|||||++++++..+...+.++++.++....+.+++. .+.+.+||++|+.++..++..+++++++++++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK-TYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE-EEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 79999999999999999999998888888899999988887877764 57899999999999999999999999999999
Q ss_pred EeCCCc-ccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 539 FDVTRA-ATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 539 yDVTd~-~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|+... .++.... .|...+...+. .++|+++|+||+|+.... ........+...+...++++||++|.|++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE----SNVPIILVGNKIDLRDAK---LKTHVAFLFAKLNGEPIIPLSAETGKNID 153 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc----cCCcEEEEEEcccCCcch---hhHHHHHHHhhccCCceEEeecCCCCCHH
Confidence 999987 7777766 78877776532 278999999999996643 33444455555555679999999999999
Q ss_pred HHHHHH
Q psy4094 617 DAAKTL 622 (663)
Q Consensus 617 ELFe~I 622 (663)
++|.+|
T Consensus 154 ~~~~~l 159 (161)
T TIGR00231 154 SAFKIV 159 (161)
T ss_pred HHHHHh
Confidence 999986
No 129
>KOG4423|consensus
Probab=99.88 E-value=2.3e-24 Score=211.11 Aligned_cols=176 Identities=72% Similarity=1.160 Sum_probs=164.2
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
..+.||++|+|+-|||||+++.+|+...|+.+|+.+||++|..++..+++...+++++||++||++|..+...||+.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 56789999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+++|||+++...|+.+..|.+++..-+...++..+|+|+.+||||............+.++++++|+..++|+|+|.+.|
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 99999999999999999999999988888888999999999999987654334457788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4094 615 IDDAAKTLVQKILEND 630 (663)
Q Consensus 615 VeELFe~IIr~Ile~~ 630 (663)
+.|+-..++++++...
T Consensus 182 i~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 182 IPEAQRELVEKILVND 197 (229)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999999998766
No 130
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.87 E-value=7.2e-22 Score=179.56 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=105.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc-----chhhhHHHHHhcCcE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE-----RFGNMTRVYYKEAVG 534 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-----rfrsl~~~~~r~ADg 534 (663)
||+|||++|||||||+++|.+..+ .+.+++++++. -.+|||+|+. .|+.+.. .++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~ 65 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------------DGAIDTPGEYVENRRLYSALIV-TAADADV 65 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------------CeeecCchhhhhhHHHHHHHHH-HhhcCCE
Confidence 899999999999999999998765 34455544432 1589999982 3444443 5899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.++.. ..|+..+ ..|+|+|+||+|+.+. .+..+++.+++...+..++|++||++|.|
T Consensus 66 vilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 66 IALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAEA--DVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred EEEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCCc--ccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 999999999998865 3454321 1499999999999652 34567778888888766799999999999
Q ss_pred HHHHHHHHH
Q psy4094 615 IDDAAKTLV 623 (663)
Q Consensus 615 VeELFe~II 623 (663)
++++|++|+
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999885
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.87 E-value=5e-21 Score=177.52 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=114.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----chhhhHHHHHh---cC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----RFGNMTRVYYK---EA 532 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----rfrsl~~~~~r---~A 532 (663)
+|+|||.+|||||||+++|.+........+..+.+.....+.+++. ..+.||||||+. .++.++..+++ .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG--RSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC--CeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 6999999999999999999875432111111222222223334332 479999999974 22234444444 59
Q ss_pred cEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 533 VGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 533 DgaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
|++|+|||+++. .+++.+..|++.+..... ...++|+|+|+||+|+.... ...+.+..++.......++++||++
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~ 155 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNP--ELLEKPRIVVLNKIDLLDEE--ELFELLKELLKELWGKPVFPISALT 155 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCc--cccccccEEEEEchhcCCch--hhHHHHHHHHhhCCCCCEEEEecCC
Confidence 999999999999 899999999999886531 22468999999999996644 2344455566554234799999999
Q ss_pred CcCHHHHHHHHHHH
Q psy4094 612 NINIDDAAKTLVQK 625 (663)
Q Consensus 612 GeNVeELFe~IIr~ 625 (663)
+.|++++|++|++.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.87 E-value=6.4e-21 Score=178.03 Aligned_cols=152 Identities=23% Similarity=0.317 Sum_probs=119.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.++|+|+|++|||||||++++.+..+. .+.++.|.++ ..+.+++ ..+.+||++|+..+...+..+++++|++|+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG---FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 589999999999999999999987654 3556666443 3444444 578999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-------CeEEEEeCC
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-------SGWFETSAK 610 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-------i~ffEtSAK 610 (663)
|||+++..+|.....|+..+... ....++|+++|+||+|+.... ..++ ++...+. ..+++|||+
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~---~~~~---i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEE---EKLAGVPVLVFANKQDLATAA---PAEE---IAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhC---hhhcCCCEEEEEECCCCccCC---CHHH---HHHHcCCcccCCCeEEEEEeECC
Confidence 99999999998888887766542 223469999999999986532 2233 3333332 247899999
Q ss_pred CCcCHHHHHHHHHH
Q psy4094 611 DNINIDDAAKTLVQ 624 (663)
Q Consensus 611 tGeNVeELFe~IIr 624 (663)
+|.|++++|+||++
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.86 E-value=3.9e-21 Score=176.05 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=109.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC---CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~---~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
.|+|+|++|||||||+++|.+. .+..++.++++++.....+.+.+. ..+++|||+|+++|......+++++|++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSG--KRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCC--cEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 6899999999999999999963 344444555555555555665532 47999999999999887888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc--CCCeEEEEeCCCCc
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH--NFSGWFETSAKDNI 613 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~--g~i~ffEtSAKtGe 613 (663)
+|||+++....+. ..++..+... ...|+|||+||+|+.... .....+++.+++... ...+++++||++|.
T Consensus 80 ~V~d~~~~~~~~~-~~~~~~~~~~------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 80 LVVAADEGIMPQT-REHLEILELL------GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEEECCCCccHhH-HHHHHHHHHh------CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 9999987322111 1222222210 114899999999996532 112234445555442 22579999999999
Q ss_pred CHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQ 624 (663)
Q Consensus 614 NVeELFe~IIr 624 (663)
|++++|+.|.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998864
No 134
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.86 E-value=5.3e-21 Score=183.61 Aligned_cols=159 Identities=28% Similarity=0.460 Sum_probs=129.1
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|..|+|||||++++..+.+. ...+|+|.+. ..+.+.+ +.+.+||++|+..++.+|..||.++|++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~--~~i~~~~---~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNI--EEIKYKG---YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEE--EEEEETT---EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCccccccc--ceeeeCc---EEEEEEeccccccccccceeecccccee
Confidence 45689999999999999999999876543 3677777554 4455543 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-----CCeEEEEeCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-----FSGWFETSAK 610 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-----~i~ffEtSAK 610 (663)
|||+|.++...+......+..+... ....++|++|++||+|+... +..+++...+.... .+.++.|||.
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~---~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~ 159 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLND---PELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAK 159 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTS---GGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred EEEEecccceeecccccchhhhcch---hhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence 9999999999999888877776643 23357999999999998763 46666666554332 2458899999
Q ss_pred CCcCHHHHHHHHHHHH
Q psy4094 611 DNINIDDAAKTLVQKI 626 (663)
Q Consensus 611 tGeNVeELFe~IIr~I 626 (663)
+|+|+.+.|+||+++|
T Consensus 160 ~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 160 TGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcC
Confidence 9999999999999875
No 135
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.86 E-value=1.5e-20 Score=174.39 Aligned_cols=156 Identities=13% Similarity=0.181 Sum_probs=108.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh---------hhHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG---------NMTRVYYK 530 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr---------sl~~~~~r 530 (663)
+|+|+|++|||||||+++|.+..+.....+..+.+.....+.+. .+.++||||+|+.... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK---YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC---ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 79999999999999999999987653322222222333233332 3689999999984211 01111123
Q ss_pred cCcEEEEEEeCCCcccH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 531 EAVGAFIVFDVTRAATF--DAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SF--e~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
.+|++|+|||+++..++ +....|+..+.... .++|+|||+||+|+.... . ..+..+++...+ .++++||
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~-~--~~~~~~~~~~~~-~~~~~~S 149 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFE-D--LSEIEEEEELEG-EEVLKIS 149 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchh-h--HHHHHHhhhhcc-CceEEEE
Confidence 46899999999987654 66677888776431 368999999999996543 1 222445554444 5799999
Q ss_pred CCCCcCHHHHHHHHHHHHH
Q psy4094 609 AKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Il 627 (663)
|++|.|++++|++|.+.++
T Consensus 150 a~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 150 TLTEEGVDEVKNKACELLL 168 (168)
T ss_pred ecccCCHHHHHHHHHHHhC
Confidence 9999999999999998763
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.84 E-value=4.6e-20 Score=178.63 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=115.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc---------hhhhHHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER---------FGNMTRV 527 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr---------frsl~~~ 527 (663)
..++|+|+|++|||||||++++++..+........+.+.....+.+++. ..+.||||+|+.. |...+ .
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG--REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC--ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 4579999999999999999999987654333333344444555555543 3689999999732 22222 2
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
.+..+|++|+|||++++.++..+..|...+... ...++|+|+|+||+|+.... ....++...+ .+++++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~----~~~~~~viiV~NK~Dl~~~~------~~~~~~~~~~-~~~~~~ 185 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKEL----GAEDIPMILVLNKIDLLDDE------ELEERLEAGR-PDAVFI 185 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc----CcCCCCEEEEEEccccCChH------HHHHHhhcCC-CceEEE
Confidence 367899999999999999999888888877643 23468999999999986543 1113344344 479999
Q ss_pred eCCCCcCHHHHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~I 626 (663)
||++|.|++++|++|.+++
T Consensus 186 Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 186 SAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EcCCCCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.84 E-value=3.6e-20 Score=178.96 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=109.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh--CCCCCcc------------ccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH--QFFSPHY------------RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM 524 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg--~~fsee~------------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl 524 (663)
.+|+|+|+.+||||||+++|+. +.|...+ ..+.|..+....+.+..+ .+.++||||+|+++|..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK-DTKINIVDTPGHADFGGE 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC-CEEEEEEECCCcHHHHHH
Confidence 4899999999999999999997 5554433 234555555555555443 478999999999999999
Q ss_pred HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-----
Q psy4094 525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----- 599 (663)
Q Consensus 525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----- 599 (663)
+..+++++|++|+|||+++.. +.....|+..+.. .++|+|||+||+|+...+.....+++.+++..+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999743 3333444444331 358999999999997654223345555655332
Q ss_pred --CCCeEEEEeCCCCcCHHHH
Q psy4094 600 --NFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 600 --g~i~ffEtSAKtGeNVeEL 618 (663)
+ ++++++||++|.|+.++
T Consensus 154 ~~~-~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 154 QLD-FPVLYASAKNGWASLNL 173 (194)
T ss_pred cCc-cCEEEeehhcccccccc
Confidence 3 47999999999877544
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=9.1e-20 Score=168.42 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=114.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
.|+|+|+.|+|||||+++|....+...+..+++.++....+..+......+.+|||+|++.|..++..++..+|++|+|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988877666666666655556554111367999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCCCCcC
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAKDNIN 614 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAKtGeN 614 (663)
|+++....+... .+..+.. .++|+|+|+||+|+.........+....+... ....++++|||++|+|
T Consensus 82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEG 153 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCC
Confidence 999854322222 2222221 35899999999998653210111112111111 1124799999999999
Q ss_pred HHHHHHHHHHHH
Q psy4094 615 IDDAAKTLVQKI 626 (663)
Q Consensus 615 VeELFe~IIr~I 626 (663)
++++|++|+++.
T Consensus 154 i~~l~~~l~~~~ 165 (168)
T cd01887 154 IDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 139
>PRK04213 GTP-binding protein; Provisional
Probab=99.83 E-value=7.3e-20 Score=176.55 Aligned_cols=156 Identities=20% Similarity=0.318 Sum_probs=108.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC-----------ccchhhhH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG-----------QERFGNMT 525 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG-----------QErfrsl~ 525 (663)
..++|+|+|.+|||||||+++|.+..+...+.++++.+ ...+.+. .+++|||+| +++|+.++
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG-----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec-----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 45799999999999999999999988766666655433 3333332 489999999 67788888
Q ss_pred HHHHh-cC---cEEEEEEeCCCcccHHHH-HHHH--------HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHH
Q psy4094 526 RVYYK-EA---VGAFIVFDVTRAATFDAV-LKWK--------QDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKI 592 (663)
Q Consensus 526 ~~~~r-~A---DgaILVyDVTd~~SFe~L-~~wi--------eeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei 592 (663)
..|+. .+ +++++|+|.++ +..+ ..|. ..+...+. ..++|+|||+||+|+...+ .+.+
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~----~~~~ 150 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKS---FIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR----DEVL 150 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCcc---ccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH----HHHH
Confidence 78775 44 56666666543 3222 2231 11111111 2469999999999986532 3455
Q ss_pred HHHHHHcCC--------CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 593 DEFIKEHNF--------SGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 593 ~qlak~~g~--------i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
.+++..+++ ..+++|||++| ||+++|++|++.+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 666666664 14799999999 99999999999875543
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=1.6e-19 Score=164.85 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=114.3
Q ss_pred EEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh------hHHHHHh--cCcE
Q psy4094 463 VIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN------MTRVYYK--EAVG 534 (663)
Q Consensus 463 VLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs------l~~~~~r--~ADg 534 (663)
|+|..|||||||++++.+..+...+.++++.++....+.+++ ..+.+|||||+..+.. ++..++. ++|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG---KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC---eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 589999999999999998876666667777777777777765 4789999999987764 4666775 8999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|+|+++.... ..|+..+.. .++|+|+|+||+|+.... .+ ......++..++. +++++||.+|.|
T Consensus 78 vi~v~d~~~~~~~---~~~~~~~~~-------~~~~~iiv~NK~Dl~~~~-~~-~~~~~~~~~~~~~-~~~~iSa~~~~~ 144 (158)
T cd01879 78 IVNVVDATNLERN---LYLTLQLLE-------LGLPVVVALNMIDEAEKR-GI-KIDLDKLSELLGV-PVVPTSARKGEG 144 (158)
T ss_pred EEEEeeCCcchhH---HHHHHHHHH-------cCCCEEEEEehhhhcccc-cc-hhhHHHHHHhhCC-CeEEEEccCCCC
Confidence 9999999875442 234444432 358999999999997643 22 2334566666674 799999999999
Q ss_pred HHHHHHHHHHHH
Q psy4094 615 IDDAAKTLVQKI 626 (663)
Q Consensus 615 VeELFe~IIr~I 626 (663)
+.++|+++.+.+
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.82 E-value=3.8e-19 Score=154.87 Aligned_cols=156 Identities=36% Similarity=0.628 Sum_probs=120.4
Q ss_pred EEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeC
Q psy4094 463 VIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDV 541 (663)
Q Consensus 463 VLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDV 541 (663)
|+|+.|+|||||++++.+... ...+..+. .++....+..... ...+.+||++|+..+...+..+++.+|++|+|||+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGK-KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCE-EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 589999999999999998877 45555665 6777777766554 57899999999999988889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH
Q psy4094 542 TRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT 621 (663)
Q Consensus 542 Td~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~ 621 (663)
++..++..+..|+..... .....++|+|+|+||+|+.... .................+++++|+..+.|+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~ivv~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 79 TDRESFENVKEWLLLILI---NKEGENIPIILVGNKIDLPEER-VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred cCHHHHHHHHHHHHHHHH---hhccCCCcEEEEEecccccccc-chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence 999999998888422222 1234679999999999987644 112221123333344468999999999999999999
Q ss_pred HHH
Q psy4094 622 LVQ 624 (663)
Q Consensus 622 IIr 624 (663)
|++
T Consensus 155 l~~ 157 (157)
T cd00882 155 LAE 157 (157)
T ss_pred HhC
Confidence 863
No 142
>KOG0073|consensus
Probab=99.81 E-value=7.8e-19 Score=169.50 Aligned_cols=165 Identities=23% Similarity=0.362 Sum_probs=131.7
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.++.++|+|+|..|+|||||+++|.+.. .....+|.| |..+++.+++ +.|+|||++||..++..|..||..+|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~---~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG---YTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc---eEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 3457999999999999999999998865 445566666 6677777765 689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHH---HHHHHHHcCCCeEEEEeCCC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAK---IDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~ee---i~qlak~~g~i~ffEtSAKt 611 (663)
+|+|+|..|+..|+.....+..+.. .....+.|++|++||.|+...-....... ...+++.+. ++++-|||.+
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~t 162 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVT 162 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEeccc
Confidence 9999999999999888776666553 33446789999999999985321111221 233444455 4799999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
|+++.+-|.|++..+..+
T Consensus 163 ge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 163 GEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999999998873
No 143
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.80 E-value=1e-18 Score=163.62 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=114.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccc----------------cceeeeceeEEEecCCceeEEEEEEeCCCccchhh
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYR----------------ATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN 523 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~----------------~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs 523 (663)
+|+|+|..|+|||||+++|++......+. .+++.+.....+... ...+.|||++|+..|..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDtpG~~~~~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP---DRRVNFIDTPGHEDFSS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC---CEEEEEEeCCCcHHHHH
Confidence 48999999999999999999876654332 222333333333333 25799999999999999
Q ss_pred hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHcC--
Q psy4094 524 MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKIDEFIKEHN-- 600 (663)
Q Consensus 524 l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei~qlak~~g-- 600 (663)
.+..+++.+|++|+|+|+.++...... .++..+.. .++|+++|+||+|+.. .......+++.+++...+
T Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 78 EVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred HHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 999999999999999999987655433 34443331 4689999999999875 221223344555554432
Q ss_pred -----------CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 601 -----------FSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 601 -----------~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
..++|++||++|.|++++|.+|.+.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 36799999999999999999999876
No 144
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.79 E-value=1.6e-18 Score=196.57 Aligned_cols=159 Identities=18% Similarity=0.280 Sum_probs=121.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCC-------CCCcccc------ceeeeceeEE--Eec---CCceeEEEEEEeCCCcc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQF-------FSPHYRA------TIGVDFALKV--LSW---DHETIIRLQLWDIAGQE 519 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~-------fsee~~~------TigiDf~~kt--V~v---dge~~vkLqIwDTpGQE 519 (663)
..+|+|||+.++|||||+++|+... +...+.. ..|+.+.... +.+ ++. .+.|+|||||||.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~-~~~l~liDTPG~~ 81 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGE-TYVLNLIDTPGHV 81 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCC-EEEEEEEECCCcH
Confidence 4699999999999999999998642 2222222 2244444433 333 333 6899999999999
Q ss_pred chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc
Q psy4094 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH 599 (663)
Q Consensus 520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~ 599 (663)
+|...+..+++.||++|||||++++.+++....|...+. .++|+|+|+||+|+.... ..+...++...+
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~---~~~~~~el~~~l 150 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSAD---PERVKKEIEEVI 150 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccC---HHHHHHHHHHHh
Confidence 999999999999999999999999988888888765543 358999999999986532 223344555555
Q ss_pred CCC--eEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 600 NFS--GWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 600 g~i--~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
++. .++++||++|.||+++|++|++.+..
T Consensus 151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 151 GLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 542 48999999999999999999987743
No 145
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2.8e-18 Score=182.45 Aligned_cols=166 Identities=16% Similarity=0.116 Sum_probs=121.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHH---HHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRV---YYK 530 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~---~~r 530 (663)
...|+|||.++||||||++++.+........+..+.+...-.+.+.+. ..+.|||+||... ...+... ++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 358999999999999999999875433232333344444445555432 4689999999632 2234444 455
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
.++++|+|||+++..+++.+..|+.+|..+.. ...+.|+|||+||+|+.... .+..+....++...+ ..+|+|||+
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~--~L~~kp~IIV~NKiDL~~~~-~~~~~~~~~~~~~~~-~~i~~iSAk 311 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSP--ELADKPRILVLNKIDLLDEE-EEREKRAALELAALG-GPVFLISAV 311 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhh--hcccCCeEEEEECcccCCch-hHHHHHHHHHHHhcC-CCEEEEEcC
Confidence 79999999999998899999999999987532 22468999999999997543 233334555555555 479999999
Q ss_pred CCcCHHHHHHHHHHHHHhh
Q psy4094 611 DNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile~ 629 (663)
+++||+++|++|.+.+...
T Consensus 312 tg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 312 TGEGLDELLRALWELLEEA 330 (335)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999887653
No 146
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.79 E-value=1.2e-18 Score=168.09 Aligned_cols=162 Identities=19% Similarity=0.132 Sum_probs=107.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC----CC---CCccccceeeeceeEEEecC-----------CceeEEEEEEeCCCccc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ----FF---SPHYRATIGVDFALKVLSWD-----------HETIIRLQLWDIAGQER 520 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~----~f---see~~~TigiDf~~ktV~vd-----------ge~~vkLqIwDTpGQEr 520 (663)
++|+|+|+.+||||||+++|+.. .+ ..+..++++.+.....+.+. ....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 22 22233344444433333332 11146899999999976
Q ss_pred hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHH-
Q psy4094 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKE- 598 (663)
Q Consensus 521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~- 598 (663)
+..........+|++|+|+|+++.........|.. ... .++|+|+|+||+|+.... .....+++.+.+..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 64444445567899999999998665555443331 111 247999999999986422 11122333332221
Q ss_pred -----cCCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 599 -----HNFSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 599 -----~g~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
....+++++||++|.|+++|+++|.++|+.
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 122579999999999999999999998754
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=2.4e-18 Score=189.65 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=120.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc----------cchhhhH-
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----------ERFGNMT- 525 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----------Erfrsl~- 525 (663)
.++|+|+|.+|||||||+++|++..+. ....++++.++....+.+++. .+.||||+|. +.|..+.
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~---~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK---TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE---EEEEEECCCccccccccchHHHHHHHHH
Confidence 489999999999999999999987653 455677777887777777764 4689999995 3343333
Q ss_pred HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHHcCCCeE
Q psy4094 526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~eei~qlak~~g~i~f 604 (663)
..++++||++|+|||++++.+++.+. |+..+.. .++|+|||+||+|+..... ....+++...+.....+++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 359 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR 359 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence 34678999999999999999988874 4444432 4689999999999965320 1112223222233344689
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
++|||++|.||+++|+.|.+.+.....
T Consensus 360 ~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 360 VNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999987754443
No 148
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.78 E-value=7.9e-19 Score=155.14 Aligned_cols=114 Identities=30% Similarity=0.584 Sum_probs=86.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCC--CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFS--PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fs--ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
||+|+|+.|||||||+++|++..+. ..+....+..+......+... ...+.+||++|++.+...+..++..+|++||
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD-RQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE-EEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC-ceEEEEEecCccceecccccchhhcCcEEEE
Confidence 7999999999999999999998876 233334444455455555554 4459999999999998888888999999999
Q ss_pred EEeCCCcccHHHHHH---HHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 538 VFDVTRAATFDAVLK---WKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 538 VyDVTd~~SFe~L~~---wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
|||++++.+|+.+.. |+..+..+ ..++|+||||||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~-----~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKR-----DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHH-----SSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHcc-----CCCCCEEEEEeccC
Confidence 999999999999754 45555532 24599999999998
No 149
>KOG1673|consensus
Probab=99.78 E-value=5.3e-19 Score=169.67 Aligned_cols=167 Identities=27% Similarity=0.461 Sum_probs=144.1
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||.++|++.+|||||+-.|+++.+++++..+.|++|..+++.+.+. .+.+.|||.+||++|..+....+.++-++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t-~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGT-DISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecce-EEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 34589999999999999999999999999999999999999999999987 78999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC----CCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK----EGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d----er~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
+|+||++.+..+..+.+|+.+-+. .+..-+| ||||+|.|+-- +.......+++.+|+..+. .+|.||+..
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~----~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~ 170 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARG----LNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA-SLFFCSTSH 170 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhc----cCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC-cEEEeeccc
Confidence 999999999999999999988773 2334455 68999999632 2212234456778888885 799999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
+.||..+|.-+..++..-
T Consensus 171 sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 171 SINVQKIFKIVLAKLFNL 188 (205)
T ss_pred cccHHHHHHHHHHHHhCC
Confidence 999999999998887653
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.78 E-value=7.5e-18 Score=152.59 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=108.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh--------hHHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN--------MTRVYY 529 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs--------l~~~~~ 529 (663)
++|+|+|+.|+|||||++++.+..+. ....++.+.++....+.+.+ ..+.+|||+|+.++.. ....++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG---IPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC---EEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999987543 23344555555555555543 4789999999765532 233567
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
.++|++++|+|++++.+......|.. ..+.|+|+|+||+|+..... . .....+ .+++++||
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~-~-------~~~~~~-~~~~~~Sa 139 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSE-L-------LSLLAG-KPIIAISA 139 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCccc-c-------ccccCC-CceEEEEC
Confidence 89999999999999888777654432 24589999999999876441 1 222233 57999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy4094 610 KDNINIDDAAKTLVQKI 626 (663)
Q Consensus 610 KtGeNVeELFe~IIr~I 626 (663)
+++.|+++++++|.+.+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998754
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=3.8e-18 Score=154.90 Aligned_cols=148 Identities=19% Similarity=0.201 Sum_probs=105.4
Q ss_pred EEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh--------hHHHHHhcC
Q psy4094 462 LVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN--------MTRVYYKEA 532 (663)
Q Consensus 462 VVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs--------l~~~~~r~A 532 (663)
+|+|+.|||||||++++++.... ....+..+.+.....+.+++ ..+.+|||+|+..+.. .+..+++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG---REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC---eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 58999999999999999986422 12233344455555555554 5799999999987543 345678899
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
|++|+|+|..+..+.... .+...+.. .++|+|+|+||+|+.... .. ...+...+...++++||++|
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~-------~~~piiiv~nK~D~~~~~-----~~-~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK-------SKKPVILVVNKVDNIKEE-----DE-AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh-------cCCCEEEEEECcccCChH-----HH-HHHHHhcCCCCeEEEecccC
Confidence 999999999876655443 22222321 248999999999986643 11 23334456557899999999
Q ss_pred cCHHHHHHHHHHHH
Q psy4094 613 INIDDAAKTLVQKI 626 (663)
Q Consensus 613 eNVeELFe~IIr~I 626 (663)
.|++++|++|++++
T Consensus 144 ~gv~~l~~~l~~~~ 157 (157)
T cd01894 144 RGIGDLLDAILELL 157 (157)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998764
No 152
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=1.5e-17 Score=152.34 Aligned_cols=156 Identities=18% Similarity=0.150 Sum_probs=106.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccch----------hhh-H
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----------GNM-T 525 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----------rsl-~ 525 (663)
.++|+|+|+.|+|||||+++|++..+. ....+..+.+.....+..++. .+.+||++|+.+. ... .
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK---KYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe---eEEEEECCCCccccchhccHHHHHHHHH
Confidence 379999999999999999999986543 223334444444455555543 5789999997433 111 1
Q ss_pred HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-HHc---CC
Q psy4094 526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI-KEH---NF 601 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla-k~~---g~ 601 (663)
..+++.+|++|+|+|+.++.++.... ++..+. ..+.|+|+|+||+|+.... ....+.+.+.. ... +.
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 149 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLR-IAGLIL-------EEGKALVIVVNKWDLVEKD-SKTMKEFKKEIRRKLPFLDY 149 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH-------hcCCCEEEEEeccccCCcc-HHHHHHHHHHHHhhcccccC
Confidence 23567899999999999988876643 333332 1358999999999987643 12222222222 222 23
Q ss_pred CeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 602 SGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 602 i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
.+++++||+++.|++++++++.+.
T Consensus 150 ~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CceEEEeccCCCCHHHHHHHHHHh
Confidence 579999999999999999998764
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.77 E-value=5.6e-18 Score=181.03 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=116.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc---------chhhhHHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE---------RFGNMTRV 527 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE---------rfrsl~~~ 527 (663)
..++|+|+|.+|||||||+++|.+..+.....+..+.|+..+.+.+.++ ..+.||||+|.. .|...+ .
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~f~~tl-e 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAAFRATL-E 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence 3479999999999999999999987654444445556777888888654 478999999972 233322 2
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
++.+||++|+|||++++.+++.+..|...+... ...++|+|+|+||+|+.... ....+.. +...+++|
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l----~~~~~piIlV~NK~Dl~~~~------~v~~~~~--~~~~~i~i 332 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL----GAEDIPQLLVYNKIDLLDEP------RIERLEE--GYPEAVFV 332 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh----ccCCCCEEEEEEeecCCChH------hHHHHHh--CCCCEEEE
Confidence 478999999999999999988888787766643 23468999999999986432 1222211 22368999
Q ss_pred eCCCCcCHHHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~ 625 (663)
||++|.|+++++++|.+.
T Consensus 333 SAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EccCCCCHHHHHHHHHhh
Confidence 999999999999998764
No 154
>KOG0096|consensus
Probab=99.77 E-value=5.1e-19 Score=174.13 Aligned_cols=165 Identities=33% Similarity=0.535 Sum_probs=142.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+|++++|+.|.|||+++.+++.+.|...|.+++|++...-....+.+ .+++..|||+||+.+..+.+.||-++.++|
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g-~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRG-QIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccC-cEEEEeeecccceeecccccccEEecceeE
Confidence 4699999999999999999999999999999999999987776666554 699999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
++||++.+-.+.++..|..++.+.| .++||+++|||.|..... .....-.+....+ +.||++||+.+.|++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~-----~NiPiv~cGNKvDi~~r~---~k~k~v~~~rkkn-l~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR-----ENIPIVLCGNKVDIKARK---VKAKPVSFHRKKN-LQYYEISAKSNYNFE 158 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh-----cCCCeeeeccceeccccc---cccccceeeeccc-ceeEEeecccccccc
Confidence 9999999999999999999998764 459999999999985522 1122223444455 479999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy4094 617 DAAKTLVQKILENDK 631 (663)
Q Consensus 617 ELFe~IIr~Ile~~k 631 (663)
.-|.|+++.+...-.
T Consensus 159 kPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 159 RPFLWLARKLTGDPS 173 (216)
T ss_pred cchHHHhhhhcCCCC
Confidence 999999999876654
No 155
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.77 E-value=5e-18 Score=157.62 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=107.4
Q ss_pred EEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhh---HHHHHhcCcEE
Q psy4094 463 VIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNM---TRVYYKEAVGA 535 (663)
Q Consensus 463 VLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl---~~~~~r~ADga 535 (663)
|+|.+|||||||++++.+..+.....+..+.+.....+.+.+. ..+.|||+||+.. ++.+ ...+++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999987642222222223333334555522 4689999999732 2222 23457889999
Q ss_pred EEEEeCCCc------ccHHHHHHHHHHHHhhcCC---CCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 536 FIVFDVTRA------ATFDAVLKWKQDLDAKVTL---PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 536 ILVyDVTd~------~SFe~L~~wieeL~~~~~~---~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE 606 (663)
++|+|+++. .++..+..|...+...... ....++|+|+|+||+|+.... ..........+.. ....+++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~~~ 156 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-ELEEELVRELALE-EGAEVVP 156 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-HHHHHHHHHHhcC-CCCCEEE
Confidence 999999998 5788888888877643210 001368999999999996543 1111111222222 3357999
Q ss_pred EeCCCCcCHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~ 625 (663)
|||+++.|++++++++++.
T Consensus 157 ~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 157 ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EehhhhcCHHHHHHHHHhh
Confidence 9999999999999999765
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=9.8e-18 Score=184.80 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=115.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc--------hhhhHHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--------FGNMTRVYY 529 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--------frsl~~~~~ 529 (663)
.+|+|||.+|||||||+++|++..+. ....++++.+.....+.+.+. .+.||||+|++. +...+..++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR---RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc---EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 69999999999999999999987643 345566666666666666664 589999999762 445567789
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
+.||++|+|||++++.++.. ..|+..++. .++|+|||+||+|+.... .+ ..++. ..++..+|+|||
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~----~~-~~~~~-~~g~~~~~~iSA 181 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE----AD-AAALW-SLGLGEPHPVSA 181 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc----hh-hHHHH-hcCCCCeEEEEc
Confidence 99999999999999877653 345554542 458999999999986422 11 22222 334434689999
Q ss_pred CCCcCHHHHHHHHHHHHHh
Q psy4094 610 KDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 610 KtGeNVeELFe~IIr~Ile 628 (663)
++|.||+++|++|++.+..
T Consensus 182 ~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCCcHHHHHHHHhhccc
Confidence 9999999999999998865
No 157
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=8.1e-18 Score=172.31 Aligned_cols=157 Identities=17% Similarity=0.092 Sum_probs=110.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccch-h-------hhHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-G-------NMTRVYYK 530 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-r-------sl~~~~~r 530 (663)
+|+|+|.+|||||||+|+|++..+.. ...+..+.+ ....+...+. ..+.+|||||+... . .....++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 69999999999999999999987542 122222222 2333433343 46899999997532 1 12345678
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
++|++|+|+|+++..+++ ..|+..+.. .+.|+|+|+||+|+.... ........++...++..+|++||+
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFKD--KLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCHH--HHHHHHHHHHhhcCCCceEEEecC
Confidence 999999999999887765 344444442 358999999999986322 223445555555555579999999
Q ss_pred CCcCHHHHHHHHHHHHHhhh
Q psy4094 611 DNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile~~ 630 (663)
+|.|+++++++|.+.+....
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCC
Confidence 99999999999998875543
No 158
>KOG0070|consensus
Probab=99.76 E-value=4.9e-18 Score=166.22 Aligned_cols=161 Identities=22% Similarity=0.334 Sum_probs=130.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..++|++||-.++||||++.+|..+.+... .||+|.+ .-.+.+. .+.+++||++||++++.+|.+||++++++|
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfn--VE~v~yk---n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFN--VETVEYK---NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccc--eeEEEEc---ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 458999999999999999999988777655 8888844 4445554 378999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC----CeEEEEeCCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF----SGWFETSAKDN 612 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~----i~ffEtSAKtG 612 (663)
||+|.+|++.+..+..-+..+..+ ....+.|+++++||.|++... ...++.+.+..+.+ ..+..|+|.+|
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~---~~l~~~~llv~aNKqD~~~al---s~~ei~~~L~l~~l~~~~w~iq~~~a~~G 163 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAE---PELRNAPLLVFANKQDLPGAL---SAAEITNKLGLHSLRSRNWHIQSTCAISG 163 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcC---cccCCceEEEEechhhccccC---CHHHHHhHhhhhccCCCCcEEeecccccc
Confidence 999999999888877655555433 234679999999999998854 56666666655543 24667999999
Q ss_pred cCHHHHHHHHHHHHHhh
Q psy4094 613 INIDDAAKTLVQKILEN 629 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~ 629 (663)
+++.|.++|+...+..+
T Consensus 164 ~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 164 EGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccHHHHHHHHHHHHhcc
Confidence 99999999999987543
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=9.4e-18 Score=180.75 Aligned_cols=161 Identities=18% Similarity=0.122 Sum_probs=114.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh-----------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM----------- 524 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl----------- 524 (663)
..++|+|+|.+|||||||+++|++.... ....++.+.+.....+.+++. .+.||||+|+.++...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~---~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK---KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc---EEEEEECCCccccccchhhHHHHHHHH
Confidence 3489999999999999999999986532 233455555665566666553 6899999997654322
Q ss_pred HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHHHHcC
Q psy4094 525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID----EFIKEHN 600 (663)
Q Consensus 525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~----qlak~~g 600 (663)
...+++.||++|+|||++++.+.+... ++..+.. .++|+|||+||+|+.... ...++.. ..+...+
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-------~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 317 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE-------AGKALVIVVNKWDLVKDE--KTREEFKKELRRKLPFLD 317 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-------cCCcEEEEEECcccCCCH--HHHHHHHHHHHHhcccCC
Confidence 134688999999999999988877764 3333331 358999999999997211 1122222 2222234
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
.+++++|||++|.||+++|+++.+.+....
T Consensus 318 ~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 318 FAPIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 468999999999999999999998765443
No 160
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.76 E-value=1.8e-17 Score=175.82 Aligned_cols=162 Identities=16% Similarity=0.138 Sum_probs=118.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHHHH---h
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRVYY---K 530 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~~~---r 530 (663)
...|+|||.++||||||++++..........+..+.....-.+.+++. ..++|||+||+.. +..+...|+ .
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~--~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG--RSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc--eEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 458999999999999999999976533222222233333344555542 5789999999742 223444444 4
Q ss_pred cCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 531 EAVGAFIVFDVTRA---ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 531 ~ADgaILVyDVTd~---~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
.|+++|+|||+++. ..++.+..|+.+|..+.. ...+.|+|||+||+|+.... ...+.++.++..++ ..+|++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~--~l~~kp~IIV~NK~DL~~~~--~~~~~~~~l~~~~~-~~vi~i 309 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSP--ELAEKPRIVVLNKIDLLDEE--ELAELLKELKKALG-KPVFPI 309 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhh--hhccCCEEEEEeCccCCChH--HHHHHHHHHHHHcC-CcEEEE
Confidence 69999999999987 788999999988876521 23468999999999997643 23344555666666 479999
Q ss_pred eCCCCcCHHHHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~I 626 (663)
||++++||+++|++|.+.+
T Consensus 310 SAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 310 SALTGEGLDELLYALAELL 328 (329)
T ss_pred EccCCcCHHHHHHHHHHHh
Confidence 9999999999999998764
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.76 E-value=1e-17 Score=158.65 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=101.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----chhhhHHHHHhcCcEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----RFGNMTRVYYKEAVGA 535 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----rfrsl~~~~~r~ADga 535 (663)
+|+|+|.+|||||||++++.+.. . ....+.++ .+.+. .+|||||+. ++.......+.++|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~-~~~~~~~v-------~~~~~-----~~iDtpG~~~~~~~~~~~~~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-T-LARKTQAV-------EFNDK-----GDIDTPGEYFSHPRWYHALITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-c-cCccceEE-------EECCC-----CcccCCccccCCHHHHHHHHHHHhcCCEE
Confidence 79999999999999999977642 1 11222222 22222 269999973 2222223347899999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEEEeCCCCcC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-SGWFETSAKDNIN 614 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-i~ffEtSAKtGeN 614 (663)
|+|||+++..++. ..|+..+. .+.|+|+|+||+|+.. ...+.+.+++...++ .++|+|||++|+|
T Consensus 69 l~v~d~~~~~s~~--~~~~~~~~--------~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 69 IYVHGANDPESRL--PAGLLDIG--------VSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred EEEEeCCCccccc--CHHHHhcc--------CCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 9999999988763 34544331 3578999999999854 235667788878775 4899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy4094 615 IDDAAKTLVQKILE 628 (663)
Q Consensus 615 VeELFe~IIr~Ile 628 (663)
|+++|++|.+.+..
T Consensus 135 i~~l~~~l~~~~~~ 148 (158)
T PRK15467 135 VQQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHHHhchh
Confidence 99999999887644
No 162
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.76 E-value=3.6e-17 Score=147.83 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=105.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYY 529 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~ 529 (663)
..+|+|+|..|+|||||+++|++..+................+...+ .+.+.+||++|..... .....++
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--DAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--CeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 37899999999999999999998654322111111111122222222 3678999999975432 2344568
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
..+|++++|+|+++..... ...++..+.. .+.|+++|+||+|+.... ....+....+....+..+++++|+
T Consensus 81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~-------~~~~~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEG-DEFILELLKK-------SKTPVILVLNKIDLVKDK-EDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred HhCCEEEEEEECCCccCch-HHHHHHHHHH-------hCCCEEEEEEchhccccH-HHHHHHHHHHHhccCCCceEEEEe
Confidence 8899999999999872211 1223333332 258999999999997433 233444555555555568999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy4094 610 KDNINIDDAAKTLVQKI 626 (663)
Q Consensus 610 KtGeNVeELFe~IIr~I 626 (663)
+++.+++++|++|.+.+
T Consensus 152 ~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 152 LKGENVDELLEEIVKYL 168 (168)
T ss_pred ccCCChHHHHHHHHhhC
Confidence 99999999999997753
No 163
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.75 E-value=2.7e-17 Score=180.69 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=118.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh--------HHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM--------TRV 527 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl--------~~~ 527 (663)
..++|+|+|.+|||||||+++|++.... ....++.+.++....+.+++ +.+.||||+|+.++... ...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g---~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG---ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC---EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 3479999999999999999999986532 23446667788888888876 46799999998655432 246
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
+++++|++|+|||++++.+++.. |+..+.. .++|+|+|+||+|+... ....++..++. +++++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~-~~~~v 341 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN-------SLEFFVSSKVL-NSSNL 341 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc-------chhhhhhhcCC-ceEEE
Confidence 78999999999999999888876 7665542 35899999999999543 12345555664 68999
Q ss_pred eCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 608 SAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~Ile~~ 630 (663)
||++ .||+++|+.+.+.+....
T Consensus 342 Sak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 342 SAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred EEec-CCHHHHHHHHHHHHHHHh
Confidence 9997 699999999999887643
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.75 E-value=2.8e-17 Score=186.10 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=119.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
.+|+|+|+.++|||||+++|.+..+...+..+++.++....+.+++. ..+.|||||||+.|..++..++..+|++|||
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~--~~i~~iDTPGhe~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG--KMITFLDTPGHEAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC--cEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence 58999999999999999999998887777777777777777777543 2689999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC--------CeEEEEeCC
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF--------SGWFETSAK 610 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~--------i~ffEtSAK 610 (663)
||+++...-+....|. .+. ..++|+|+++||+|+... ..+.+.+.+..++. .+|+++||+
T Consensus 166 Vda~dgv~~qT~e~i~-~~~-------~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 166 VAADDGVMPQTIEAIS-HAK-------AANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EECCCCCCHhHHHHHH-HHH-------HcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 9999865444443332 121 246899999999998653 23444444444332 469999999
Q ss_pred CCcCHHHHHHHHHH
Q psy4094 611 DNINIDDAAKTLVQ 624 (663)
Q Consensus 611 tGeNVeELFe~IIr 624 (663)
+|+|++++|++|+.
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999999874
No 165
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.74 E-value=3.9e-17 Score=185.42 Aligned_cols=160 Identities=21% Similarity=0.265 Sum_probs=118.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCC--CC-------------CccccceeeeceeEEEec---CCceeEEEEEEeCCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQF--FS-------------PHYRATIGVDFALKVLSW---DHETIIRLQLWDIAGQ 518 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~--fs-------------ee~~~TigiDf~~ktV~v---dge~~vkLqIwDTpGQ 518 (663)
...+|+|||+.++|||||+.+|+... +. .+..+.+++......+.+ ++. .+.|+|||||||
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~-~~~lnLiDTPGh 84 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGE-TYILNLIDTPGH 84 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCC-cEEEEEEECCCc
Confidence 45699999999999999999998531 11 111223333332333333 333 588999999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE 598 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~ 598 (663)
.+|...+..+++.||++|||||++++...+....|...+. .++|+|+|+||+|+.... ..+...++...
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~---~~~v~~ei~~~ 153 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAAD---PERVKQEIEDV 153 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCccc---HHHHHHHHHHH
Confidence 9999999999999999999999999888887777765432 358999999999986543 22233445454
Q ss_pred cCC--CeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 599 HNF--SGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 599 ~g~--i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
+++ ..++++||++|.||+++|++|++.+..
T Consensus 154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 154 IGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred hCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 554 248999999999999999999988754
No 166
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=3.8e-17 Score=173.54 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=112.9
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccc-hhhhHH-------
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-FGNMTR------- 526 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-frsl~~------- 526 (663)
...++|+|+|++|||||||+++|++..+.. ......+.++....+.+++ ..+.||||||+.. +..+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~---~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD---TQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC---eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 345899999999999999999999887652 1122222344445555554 4689999999843 332222
Q ss_pred HHHhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CCeE
Q psy4094 527 VYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FSGW 604 (663)
Q Consensus 527 ~~~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i~f 604 (663)
.++.+||++|+|+|..+ +|..+. .|+..+.. .+.|+|||+||+|+... ...++.+++...+ ...+
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~-------~~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i 193 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRS-------LNIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLL 193 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh-------cCCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEE
Confidence 24679999999999764 555554 45555542 24678899999998642 2455666665544 3579
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
|++||++|.|++++|++|+..+.....
T Consensus 194 ~~iSAktg~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 194 FPISALSGKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred EEEeccCccCHHHHHHHHHHhCCCCCC
Confidence 999999999999999999998766543
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.73 E-value=6.3e-17 Score=154.42 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=108.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----------cchhhhH
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----------ERFGNMT 525 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----------Erfrsl~ 525 (663)
+..++|+|+|++|||||||+++|++..+...+.++.+.......+.++ ..+.||||+|. ++|..+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN----DKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC----CeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 356899999999999999999999876655555555533323223322 46899999994 4556666
Q ss_pred HHHHhcC---cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCC
Q psy4094 526 RVYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNF 601 (663)
Q Consensus 526 ~~~~r~A---DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~ 601 (663)
..++..+ +++++|+|.+++...... .+...+. ..++|+++|+||+|+.... .....+.+..++....
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-------~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~- 168 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-------EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD- 168 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-------HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC-
Confidence 7777765 578888998876554332 1112222 1358999999999986532 1112233444444443
Q ss_pred CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 602 SGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 602 i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
..++++||+++.|++++|+.|.+.+-
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 47999999999999999999987653
No 168
>KOG0075|consensus
Probab=99.73 E-value=1.6e-17 Score=158.40 Aligned_cols=157 Identities=23% Similarity=0.382 Sum_probs=126.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+.+.++|-.++|||||++....+.|.+...+++|.. .+.++- | .+.+.+||++||.+|+.+|.+|++.++++++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~tk-g--nvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVTK-G--NVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEecc-C--ceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 4689999999999999999999999999999999844 444432 2 4889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-------CeEEEEeCC
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-------SGWFETSAK 610 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-------i~ffEtSAK 610 (663)
|+|+.+++.+...+.-+..| +..+...++|++++|||.|+...- ... ++....|. +..|.+||+
T Consensus 95 ~VDaad~~k~~~sr~EL~~L---L~k~~l~gip~LVLGnK~d~~~AL---~~~---~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDL---LDKPSLTGIPLLVLGNKIDLPGAL---SKI---ALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred EeecCCcccchhhHHHHHHH---hcchhhcCCcEEEecccccCcccc---cHH---HHHHHhCccccccceEEEEEEEEc
Confidence 99999988776665443333 335667889999999999998754 222 23333332 357999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q psy4094 611 DNINIDDAAKTLVQKILE 628 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile 628 (663)
+..||+.+.+||+++-..
T Consensus 166 e~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSKS 183 (186)
T ss_pred CCccHHHHHHHHHHHhhh
Confidence 999999999999987643
No 169
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=2.3e-17 Score=159.25 Aligned_cols=162 Identities=20% Similarity=0.228 Sum_probs=114.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC------------------CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS------------------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
..++|+|+|+.++|||||+.+|+..... .+....++++.....+..... ...+.|+|+|||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~-~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN-NRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES-SEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc-ccceeecccccc
Confidence 3579999999999999999999853211 112234444444444441111 368999999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID-EFIK 597 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~-qlak 597 (663)
.+|...+...+..+|++|+|+|+.+....+....| ..+.. .++|+|||.||+|+...+.....+++. .+++
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l-~~~~~-------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHL-KILRE-------LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLK 152 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHH-HHHHH-------TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHH
T ss_pred cceeecccceecccccceeeeeccccccccccccc-ccccc-------cccceEEeeeeccchhhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999987665544333 33332 458999999999987433222233333 4444
Q ss_pred HcC-----CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 598 EHN-----FSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 598 ~~g-----~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
.++ .++++++||.+|.|+++|++.|.+.+.
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 443 357999999999999999999998764
No 170
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.73 E-value=9.4e-17 Score=186.64 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=117.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
+...|+|+|+.++|||||+++|....+......+++.+.....+.+++ ..|.|||||||+.|..++..++..+|++|
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~---~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG---GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC---EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 346899999999999999999998877766666777677666777665 46899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-------HHHcC-CCeEEEEe
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-------IKEHN-FSGWFETS 608 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql-------ak~~g-~i~ffEtS 608 (663)
||||++++..-+....|.. + ...++|+|||+||+|+.... .+.+... +..++ .++||++|
T Consensus 366 LVVdAddGv~~qT~e~i~~-a-------~~~~vPiIVviNKiDl~~a~----~e~V~~eL~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 366 LVVAADDGVMPQTIEAINH-A-------KAAGVPIIVAINKIDKPGAN----PDRVKQELSEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred EEEECCCCCCHhHHHHHHH-H-------HhcCCcEEEEEECccccccC----HHHHHHHHHHhcccHHHhCCCceEEEEe
Confidence 9999998654444333321 1 12468999999999996532 2222221 22222 25799999
Q ss_pred CCCCcCHHHHHHHHHHH
Q psy4094 609 AKDNINIDDAAKTLVQK 625 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~ 625 (663)
|++|+||+++|++|+..
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999999764
No 171
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.72 E-value=6.7e-17 Score=177.68 Aligned_cols=148 Identities=21% Similarity=0.207 Sum_probs=115.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh--------HHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM--------TRVY 528 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl--------~~~~ 528 (663)
.++|+|+|.+|||||||+++|++.... ....++.+.++....+.+++ ..+.||||+|+..+... ...+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g---~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG---IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC---eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 379999999999999999999987642 34456666788788888765 46899999998765432 2346
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
++++|++|+|||++++.+++....|.. ..+.|+|+|+||+|+.... .. . ...+ ..++++|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~-~~--~------~~~~-~~~i~iS 351 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEI-DL--E------EENG-KPVIRIS 351 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccc-hh--h------hccC-CceEEEE
Confidence 889999999999999988887655543 2358999999999996543 11 1 2223 4799999
Q ss_pred CCCCcCHHHHHHHHHHHHHh
Q psy4094 609 AKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile 628 (663)
|++|.|+++++++|.+.+..
T Consensus 352 Aktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 352 AKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eeCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998754
No 172
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.72 E-value=1e-16 Score=185.13 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=116.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEec--CCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSW--DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~v--dge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
..+|+|+|+.++|||||+++|....+......+++.++....+.+ ++. .+.|.|||||||+.|..++..++..+|++
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~-~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDE-NQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCC-ceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 358999999999999999999988777665556655544444433 232 47899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-------cC-CCeEEEE
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-------HN-FSGWFET 607 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-------~g-~i~ffEt 607 (663)
|||||++++...+....|. .+. ..++|+|||+||+|+.... .+.+.+.+.. .+ .++|+++
T Consensus 323 ILVVDA~dGv~~QT~E~I~-~~k-------~~~iPiIVViNKiDl~~~~----~e~v~~eL~~~~ll~e~~g~~vpvv~V 390 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAIN-YIQ-------AANVPIIVAINKIDKANAN----TERIKQQLAKYNLIPEKWGGDTPMIPI 390 (742)
T ss_pred EEEEECcCCCChhhHHHHH-HHH-------hcCceEEEEEECCCccccC----HHHHHHHHHHhccchHhhCCCceEEEE
Confidence 9999999865544443332 122 2468999999999986532 2223222222 22 3579999
Q ss_pred eCCCCcCHHHHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~I 626 (663)
||++|.||++||++|+...
T Consensus 391 SAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 391 SASQGTNIDKLLETILLLA 409 (742)
T ss_pred ECCCCCCHHHHHHhhhhhh
Confidence 9999999999999998754
No 173
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.72 E-value=5.7e-17 Score=159.20 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=104.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCC---CCCccccceeeeceeEEEecC---------------------------Cc---
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQF---FSPHYRATIGVDFALKVLSWD---------------------------HE--- 505 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~---fsee~~~TigiDf~~ktV~vd---------------------------ge--- 505 (663)
++|+|+|+.|+|||||+..+.+.. ...+....+.+......+.+. +.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999987531 122222222222211111111 10
Q ss_pred eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCc----ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA----ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~----~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
....+.||||||+++|...+...+..+|++|+|+|++++ .+++.+..| ... ...|+|||+||+|+.
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~------~~~~iiivvNK~Dl~ 150 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM------GLKHIIIVQNKIDLV 150 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc------CCCcEEEEEEchhcc
Confidence 015789999999999988888888999999999999974 223322222 210 114799999999986
Q ss_pred CCC-CCCCHHHHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 582 KEG-IANNPAKIDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 582 der-~~Vs~eei~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
... .....+++++++..+ ...++|++||++|.|++++|++|.+.+.
T Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 151 KEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 522 111224444555443 1247999999999999999999987663
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1.5e-16 Score=172.24 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=110.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc--------hhhhHHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--------FGNMTRVYY 529 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--------frsl~~~~~ 529 (663)
++|+|+|.+|||||||+++|++.... ....+.++.++....+.+++ ..+.||||+|++. +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG---REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC---cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 58999999999999999999987642 23345566677777777766 5799999999987 334456678
Q ss_pred hcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 530 KEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
..+|++|+|||+.++.+... +..|+.. .++|+|||+||+|+... .+...++ ..+++..++++
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~----------~~~piilv~NK~D~~~~-----~~~~~~~-~~lg~~~~~~i 142 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRK----------SNKPVILVVNKVDGPDE-----EADAYEF-YSLGLGEPYPI 142 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCCcEEEEEECccCccc-----hhhHHHH-HhcCCCCCEEE
Confidence 99999999999998655432 3334322 25899999999997541 1222333 34565458999
Q ss_pred eCCCCcCHHHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~ 625 (663)
||++|.|++++|++|+..
T Consensus 143 Sa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 143 SAEHGRGIGDLLDAILEE 160 (435)
T ss_pred EeeCCCCHHHHHHHHHhh
Confidence 999999999999999883
No 175
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.71 E-value=9.7e-17 Score=181.59 Aligned_cols=159 Identities=20% Similarity=0.258 Sum_probs=122.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
+.|+++|+.++|||||+++|.+ +.+.+++.+++++++....+.+++ ..+.|||+|||++|...+..++.++|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~---~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD---YRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC---EEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 4699999999999999999996 455667788888888777777665 5799999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC-CCCCHHHHHHHHHHcC---CCeEEEEeCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG-IANNPAKIDEFIKEHN---FSGWFETSAK 610 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der-~~Vs~eei~qlak~~g---~i~ffEtSAK 610 (663)
|+|+|++++...+.. .++..+.. .++| +|||+||+|+.+.. .....+++..++..++ ..++|+|||+
T Consensus 78 ILVVDa~~G~~~qT~-ehl~il~~-------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 78 LLVVDADEGVMTQTG-EHLAVLDL-------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEEECCCCCcHHHH-HHHHHHHH-------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 999999985432222 22222221 2477 99999999997533 1123445667766654 2589999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q psy4094 611 DNINIDDAAKTLVQKILE 628 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile 628 (663)
+|+|+++++.+|...+..
T Consensus 150 tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 150 TGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCchhHHHHHHHHHHh
Confidence 999999999998776543
No 176
>PRK11058 GTPase HflX; Provisional
Probab=99.71 E-value=1.9e-16 Score=173.40 Aligned_cols=159 Identities=19% Similarity=0.174 Sum_probs=116.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch--hhhHHH------HHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF--GNMTRV------YYK 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf--rsl~~~------~~r 530 (663)
.+|+|+|.+|||||||+|+|.+..+.....+..+.+.....+.+.+. ..+.||||+|..+. ..++.. .++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~--~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV--GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC--CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 58999999999999999999987655444555666777777777653 25789999998432 233333 368
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
.||++|+|||++++.+++.+..|...+... ...++|+|+|+||+|+.... . .... ....+...++++||+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el----~~~~~pvIiV~NKiDL~~~~---~-~~~~--~~~~~~~~~v~ISAk 345 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEI----DAHEIPTLLVMNKIDMLDDF---E-PRID--RDEENKPIRVWLSAQ 345 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHh----ccCCCCEEEEEEcccCCCch---h-HHHH--HHhcCCCceEEEeCC
Confidence 899999999999999888887666655532 12468999999999986432 1 1111 112343235899999
Q ss_pred CCcCHHHHHHHHHHHHHhh
Q psy4094 611 DNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile~ 629 (663)
+|.||++++++|.+.+...
T Consensus 346 tG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 346 TGAGIPLLFQALTERLSGE 364 (426)
T ss_pred CCCCHHHHHHHHHHHhhhc
Confidence 9999999999999988654
No 177
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.71 E-value=1.6e-16 Score=140.81 Aligned_cols=151 Identities=19% Similarity=0.131 Sum_probs=107.6
Q ss_pred EEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hhHHHHHhcCcE
Q psy4094 463 VIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NMTRVYYKEAVG 534 (663)
Q Consensus 463 VLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl~~~~~r~ADg 534 (663)
|+|..|+|||||++++.+.... .........+.....+..... ..+.+||++|+..+. .....+++.+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPL--GPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCC--CcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 5899999999999999976544 334444444454555544432 579999999987654 244558899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHH----HHHHHHcCCCeEEEEeCC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKI----DEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei----~qlak~~g~i~ffEtSAK 610 (663)
+++|+|..+........ |...+. ..+.|+|+|+||+|+.... ..... ..........+++++||+
T Consensus 79 il~v~~~~~~~~~~~~~-~~~~~~-------~~~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~sa~ 147 (163)
T cd00880 79 ILFVVDADLRADEEEEK-LLELLR-------ERGKPVLLVLNKIDLLPEE---EEEELLELRLLILLLLLGLPVIAVSAL 147 (163)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHH-------hcCCeEEEEEEccccCChh---hHHHHHHHHHhhcccccCCceEEEeee
Confidence 99999999988777665 443333 2468999999999987643 11111 122223334689999999
Q ss_pred CCcCHHHHHHHHHHHH
Q psy4094 611 DNINIDDAAKTLVQKI 626 (663)
Q Consensus 611 tGeNVeELFe~IIr~I 626 (663)
++.|+++++.++.+.+
T Consensus 148 ~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 148 TGEGIDELREALIEAL 163 (163)
T ss_pred ccCCHHHHHHHHHhhC
Confidence 9999999999998753
No 178
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.71 E-value=9.1e-17 Score=153.49 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=102.5
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----------cchhhh
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----------ERFGNM 524 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----------Erfrsl 524 (663)
....++|+|+|+.|+|||||+++|++..+...+..+.+.......+.+++ .+.+|||+|. ..|..+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND----GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC----cEEEEeCCCCccccCChhHHHHHHHH
Confidence 35568999999999999999999998765444444444333222333332 4899999994 335555
Q ss_pred HHHHHhc---CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcC
Q psy4094 525 TRVYYKE---AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHN 600 (663)
Q Consensus 525 ~~~~~r~---ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g 600 (663)
...|++. ++++|+|+|++++.+..... ++..+.. .++|+|+|+||+|+.... .....++++..+...+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 5667764 57999999999876666653 2233331 358999999999986421 1223455666666654
Q ss_pred C-CeEEEEeCCCCcCHH
Q psy4094 601 F-SGWFETSAKDNINID 616 (663)
Q Consensus 601 ~-i~ffEtSAKtGeNVe 616 (663)
. ..+|++||++|+|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 2 379999999999974
No 179
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.71 E-value=1.6e-16 Score=156.56 Aligned_cols=121 Identities=18% Similarity=0.274 Sum_probs=92.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC-cEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA-VGAFIV 538 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A-DgaILV 538 (663)
+|+|+|++|||||+|+++|..+.+...+..+ ...+....+...+. .+.+.|||+|||.+++..+..+|+++ +++|||
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~-~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGK-GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCC-CceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 6999999999999999999998876665443 32333222222122 36799999999999999999999999 999999
Q ss_pred EeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 539 FDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 539 yDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
||+++. .++..+..|+..+...... ...++|+|||+||+|+...
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhccc
Confidence 999997 6788877776655433211 2257999999999998654
No 180
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=3.7e-16 Score=171.12 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=119.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----chhhhHHHHH---h
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----RFGNMTRVYY---K 530 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----rfrsl~~~~~---r 530 (663)
...|+|||.++||||||++++.+........+..+.....-.+.+++. ..+.|||+||.. .+..+...|+ .
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 348999999999999999999976533222222333333334444422 469999999963 2334455554 4
Q ss_pred cCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 531 EAVGAFIVFDVTRA---ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 531 ~ADgaILVyDVTd~---~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
.++++|+|+|+++. ..++.+..|+.+|..+.. ...++|+|||+||+||.. ..+.+..++..++ .++|++
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~--~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~-~~i~~i 307 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP--RLLERPQIVVANKMDLPE-----AEENLEEFKEKLG-PKVFPI 307 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhch--hccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhC-CcEEEE
Confidence 59999999999864 678888889988886522 234689999999999843 2345666777776 479999
Q ss_pred eCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 608 SAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~Ile~~k 631 (663)
||+++.|+++++++|.+.+.....
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999988766543
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=3.3e-16 Score=169.55 Aligned_cols=162 Identities=19% Similarity=0.108 Sum_probs=112.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCccch----------hhh-H
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----------GNM-T 525 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----------rsl-~ 525 (663)
.++|+|+|.+|||||||+++|++... .....++.+.+.....+..++ ..+.+|||+|..+. ... .
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG---QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC---eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 58999999999999999999997543 234455555565555555554 35789999996432 111 2
Q ss_pred HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCCCeE
Q psy4094 526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~i~f 604 (663)
..+++.+|++|+|+|++++.+.+...- +..+.. .+.|+|||+||+|+.... .....+++...+...+.+++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~~~-------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i 321 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRI-AGLALE-------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPI 321 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH-------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCE
Confidence 246789999999999999888777543 333321 358999999999986422 01111222222223344689
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
+++||++|.||+++|+.+.+.+....
T Consensus 322 ~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 322 VFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999988665443
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=3.8e-16 Score=168.33 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=113.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc--------cchhhhHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ--------ERFGNMTRVYYK 530 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ--------Erfrsl~~~~~r 530 (663)
+|+|+|.+|||||||+++|++.... ....++++.+.....+.+++. .+.||||+|. +.+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~---~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR---EFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe---EEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 5899999999999999999987642 233455666666667777664 6999999996 445566777889
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
.+|++|+|+|..++...... .+...++. .+.|+|||+||+|+.... . ...+ +..+++..++++||+
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-------~~~piilVvNK~D~~~~~-~----~~~~-~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDE-EIAKWLRK-------SGKPVILVANKIDGKKED-A----VAAE-FYSLGFGEPIPISAE 143 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------hCCCEEEEEECccCCccc-c----cHHH-HHhcCCCCeEEEeCC
Confidence 99999999999986554432 23333332 358999999999986543 1 1122 345676679999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q psy4094 611 DNINIDDAAKTLVQKILE 628 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile 628 (663)
+|.|++++++++.+.+..
T Consensus 144 ~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPE 161 (429)
T ss_pred cCCChHHHHHHHHHhcCc
Confidence 999999999999988754
No 183
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=3.2e-16 Score=161.26 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=108.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYYK 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~r 530 (663)
-.|+|+|.+|||||||+++|++..+........+.......+...+ ...+.+|||||..... ......+.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4799999999999999999998766432211111112222222223 2579999999975432 23344678
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wi-eeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
++|++++|+|+++... ....++ ..+. ..+.|+|+|+||+|+.... ......+..+...++...+|++||
T Consensus 84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~-------~~~~pvilVlNKiDl~~~~-~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGDEFILEKLK-------KVKTPVILVLNKIDLVKDK-EELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhHHHHHHHHh-------hcCCCEEEEEECCcCCCCH-HHHHHHHHHHHhhCCCCeEEEecC
Confidence 8999999999998322 222222 2222 2358999999999997432 223445556666566678999999
Q ss_pred CCCcCHHHHHHHHHHHHHhhh
Q psy4094 610 KDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 610 KtGeNVeELFe~IIr~Ile~~ 630 (663)
+++.|+++++++|.+.+....
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999876543
No 184
>KOG3883|consensus
Probab=99.68 E-value=8.2e-16 Score=147.60 Aligned_cols=167 Identities=22% Similarity=0.322 Sum_probs=138.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCC--CCccccceeeeceeEEEecCCceeEEEEEEeCCCccch-hhhHHHHHhcCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFF--SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-GNMTRVYYKEAV 533 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~f--see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-rsl~~~~~r~AD 533 (663)
...||+|+|..+||||+|+.+++-+.. ..++.+|+. |.+.-.+..+.+-.-.|.||||+|-..+ ..+-.+|+.-+|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 347999999999999999999874333 356788887 6666677666543456999999997766 778899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
+++||||..|++||+.+..+-..|..+ .....+||++++||+|+.+.+ .+..+.++.||+.-. +.+++++|..-.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~---KdKKEvpiVVLaN~rdr~~p~-~vd~d~A~~Wa~rEk-vkl~eVta~dR~ 161 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKH---KDKKEVPIVVLANKRDRAEPR-EVDMDVAQIWAKREK-VKLWEVTAMDRP 161 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhc---cccccccEEEEechhhcccch-hcCHHHHHHHHhhhh-eeEEEEEeccch
Confidence 999999999999999988766666653 344679999999999998766 788888999998777 589999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy4094 614 NIDDAAKTLVQKILEN 629 (663)
Q Consensus 614 NVeELFe~IIr~Ile~ 629 (663)
.+-|.|.++..++...
T Consensus 162 sL~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 162 SLYEPFTYLASRLHQP 177 (198)
T ss_pred hhhhHHHHHHHhccCC
Confidence 9999999999888654
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=5.1e-16 Score=179.20 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=115.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc----------chhhhH-
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----------RFGNMT- 525 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----------rfrsl~- 525 (663)
.+||+|+|.+|||||||+++|++.... ....++.+.+.....+.+++. .+.||||+|+. .|..+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~---~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE---DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC---EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 379999999999999999999987653 344555666777777777765 46799999953 222222
Q ss_pred HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-H---cCC
Q psy4094 526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-E---HNF 601 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-~---~g~ 601 (663)
..+++.+|++|+|||++++.+++.+.-| ..+.. .++|+|||+||+|+.... ..+.....+. . ...
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-------~~~piIiV~NK~DL~~~~---~~~~~~~~~~~~l~~~~~ 595 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD-------AGRALVLVFNKWDLMDEF---RRQRLERLWKTEFDRVTW 595 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCEEEEEEchhcCChh---HHHHHHHHHHHhccCCCC
Confidence 3347889999999999999998887544 33331 358999999999996532 1222222222 1 233
Q ss_pred CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 602 SGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 602 i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
.+++++||++|.||+++|+.+.+.+....
T Consensus 596 ~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 596 ARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 56799999999999999999999876544
No 186
>PRK10218 GTP-binding protein; Provisional
Probab=99.68 E-value=7.6e-16 Score=175.12 Aligned_cols=164 Identities=15% Similarity=0.206 Sum_probs=121.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh--CCCCCcc------------ccceeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH--QFFSPHY------------RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG 522 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg--~~fsee~------------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr 522 (663)
...+|+|+|+.++|||||+++|+. +.+...+ ..+.|+.+....+.+..+ .+.++||||+||.+|.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-DYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC-CEEEEEEECCCcchhH
Confidence 357999999999999999999996 3333221 233445555554444433 4789999999999999
Q ss_pred hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-
Q psy4094 523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF- 601 (663)
Q Consensus 523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~- 601 (663)
..+..+++.+|++|||||+++....+....|...+. .++|+|+|+||+|+...+.....+++..++...+.
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--------~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--------YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--------cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 999999999999999999998765555444443222 35899999999999876644455666666543221
Q ss_pred -----CeEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Q psy4094 602 -----SGWFETSAKDNI----------NIDDAAKTLVQKILEN 629 (663)
Q Consensus 602 -----i~ffEtSAKtGe----------NVeELFe~IIr~Ile~ 629 (663)
++++.+||++|. ++..||+.|++.+..-
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 468999999998 5889999888887543
No 187
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.68 E-value=5.5e-16 Score=140.73 Aligned_cols=152 Identities=20% Similarity=0.301 Sum_probs=102.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----------chhhhHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----------RFGNMTRVYY 529 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----------rfrsl~~~~~ 529 (663)
.|+|+|+.|+|||||++.++++.+......+.+.......+..++ .+.+||++|.. .+..+...|+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND----KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC----eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 389999999999999999997666655555655444444444433 68999999943 3455566666
Q ss_pred hc---CcEEEEEEeCCCcccH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHH-HcCCC
Q psy4094 530 KE---AVGAFIVFDVTRAATF--DAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIK-EHNFS 602 (663)
Q Consensus 530 r~---ADgaILVyDVTd~~SF--e~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak-~~g~i 602 (663)
.. ++++++++|..+..+. ..+..|+..+ +.|+++|+||+|+.... .......+...+. .....
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP 146 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 54 5688899999876332 2333444322 38999999999985321 0111222233333 23445
Q ss_pred eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 603 GWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 603 ~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
+++++||+++.++++++++|.+.
T Consensus 147 ~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 147 PIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred ceEEEecCCCCCHHHHHHHHHHh
Confidence 79999999999999999999875
No 188
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.68 E-value=1.9e-16 Score=172.28 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=111.7
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh--CCC-----------------------------CCccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH--QFF-----------------------------SPHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg--~~f-----------------------------see~~~TigiDf~~ktV~vdg 504 (663)
...++|+++|+.++|||||+.+|+. +.. .++..++++++.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 4568999999999999999999984 211 123345677777766666543
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHH--HHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQ--DLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wie--eL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
+.++|||++||++|......++..+|++|||||++++.++... .|.. .+...+ ...++|||+||+|+..
T Consensus 85 ---~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~-----~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 85 ---YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTL-----GINQLIVAINKMDSVN 155 (426)
T ss_pred ---eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHc-----CCCeEEEEEEChhccC
Confidence 6899999999999987777788999999999999998644221 1211 122111 1257999999999964
Q ss_pred CC---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHHH
Q psy4094 583 EG---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDAA 619 (663)
Q Consensus 583 er---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeELF 619 (663)
.. .....+++..+++..++ ++|++|||++|+||.+++
T Consensus 156 ~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 156 YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 21 12234667778877764 579999999999998754
No 189
>KOG0071|consensus
Probab=99.68 E-value=5.2e-16 Score=147.19 Aligned_cols=157 Identities=20% Similarity=0.348 Sum_probs=126.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.++|+++|-.++|||||+..+..+.. ....+|+| |...+|.+. ++.|++||++||++.+.+|.+||....++||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVtyk---N~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTYK---NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEee---eeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 48999999999999999999987643 35677777 555666665 4789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC----CeEEEEeCCCCc
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF----SGWFETSAKDNI 613 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~----i~ffEtSAKtGe 613 (663)
|+|..+++..+.+ ..+|..++......+.++++.+||.|+++.. ..+++..++..-.+ ..+.+++|.+|.
T Consensus 91 V~Dsa~~dr~eeA---r~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~leLe~~r~~~W~vqp~~a~~gd 164 (180)
T KOG0071|consen 91 VVDSADRDRIEEA---RNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKLELERIRDRNWYVQPSCALSGD 164 (180)
T ss_pred EEeccchhhHHHH---HHHHHHHhCCHhhhcceEEEEecCccccccc---CHHHHHHHhccccccCCccEeeccccccch
Confidence 9999988655554 4555555556666789999999999999865 67777776654321 236789999999
Q ss_pred CHHHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQKI 626 (663)
Q Consensus 614 NVeELFe~IIr~I 626 (663)
++.|-|.|+.+.+
T Consensus 165 gL~eglswlsnn~ 177 (180)
T KOG0071|consen 165 GLKEGLSWLSNNL 177 (180)
T ss_pred hHHHHHHHHHhhc
Confidence 9999999998865
No 190
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=1.6e-15 Score=168.82 Aligned_cols=168 Identities=16% Similarity=0.120 Sum_probs=118.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHH---HHHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTR---VYYK 530 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~---~~~r 530 (663)
...|+|||.++||||||+++|.+........+..+.+...-.+.+.+ ..|+|||+||... ...+.. .++.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~---~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD---TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC---eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 45899999999999999999997654433334444444444555554 4799999999532 222222 2456
Q ss_pred cCcEEEEEEeCCC----cccHHHHHHHHHHHHhhcCCC-------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc
Q psy4094 531 EAVGAFIVFDVTR----AATFDAVLKWKQDLDAKVTLP-------DGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH 599 (663)
Q Consensus 531 ~ADgaILVyDVTd----~~SFe~L~~wieeL~~~~~~~-------~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~ 599 (663)
+||++|+|+|+++ ++.+..+..|..+|..+.... ...+.|+|||+||+|+.+.. ...+.....+...
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~l~~~l~~~ 313 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEFVRPELEAR 313 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH--HHHHHHHHHHHHc
Confidence 7999999999985 346777777777777654210 22468999999999997543 1223333344455
Q ss_pred CCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 600 NFSGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 600 g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
++ ++|+|||+++.||++|+.+|.+.+...+.
T Consensus 314 g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 314 GW-PVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred CC-eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 64 79999999999999999999998866543
No 191
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.66 E-value=1.3e-15 Score=172.90 Aligned_cols=159 Identities=13% Similarity=0.187 Sum_probs=117.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh--CCCCC--------------ccccceeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH--QFFSP--------------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG 522 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg--~~fse--------------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr 522 (663)
.+|+|||+.++|||||+.+|+. +.+.. +....+++......+.+.+ ++++|||||||.+|.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~---~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG---TKINIVDTPGHADFG 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC---EEEEEEECCCHHHHH
Confidence 4899999999999999999985 22221 2233444444444555543 689999999999999
Q ss_pred hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC--
Q psy4094 523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-- 600 (663)
Q Consensus 523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-- 600 (663)
..+..+++.+|++|||+|+++... .....|+..+.. .++|+|||+||+|+...+.....+++..++..++
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~-------~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~ 150 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE-------LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGAD 150 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH-------CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccc
Confidence 999999999999999999987543 333455555542 3589999999999976553333455556554322
Q ss_pred ----CCeEEEEeCCCCc----------CHHHHHHHHHHHHHh
Q psy4094 601 ----FSGWFETSAKDNI----------NIDDAAKTLVQKILE 628 (663)
Q Consensus 601 ----~i~ffEtSAKtGe----------NVeELFe~IIr~Ile 628 (663)
.++++++||++|. |+..+|+.|++.+..
T Consensus 151 ~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 151 DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 1479999999996 799999999988754
No 192
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.66 E-value=2e-15 Score=171.22 Aligned_cols=158 Identities=17% Similarity=0.107 Sum_probs=103.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCc----cccceeeeceeEEEecC--C----cee-----EEEEEEeCCCccchhhh
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPH----YRATIGVDFALKVLSWD--H----ETI-----IRLQLWDIAGQERFGNM 524 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee----~~~TigiDf~~ktV~vd--g----e~~-----vkLqIwDTpGQErfrsl 524 (663)
-|+|+|+.++|||||+++|.+..+... ..+++|..+........ + ... ..|.|||||||+.|..+
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l 85 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL 85 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence 599999999999999999998776543 23344433322111000 0 001 13889999999999999
Q ss_pred HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC---C--------CHHH--
Q psy4094 525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA---N--------NPAK-- 591 (663)
Q Consensus 525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~---V--------s~ee-- 591 (663)
+..+++.+|++|||||+++....+....+ ..+. ..++|+|||+||+|+...... . ..+.
T Consensus 86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~-------~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 86 RKRGGALADLAILIVDINEGFKPQTQEAL-NILR-------MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHH-------HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99999999999999999984333332211 1222 135899999999998642100 0 0000
Q ss_pred ----------HHHHHH-------------HcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 592 ----------IDEFIK-------------EHNFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 592 ----------i~qlak-------------~~g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
+.++.. ..+..+++++||++|+|+++|+.+|...
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 011111 1123579999999999999999988654
No 193
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.65 E-value=1.3e-15 Score=150.34 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=105.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCc-------------------cccceeeeceeEEEecC--CceeEEEEEEeCCCc
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPH-------------------YRATIGVDFALKVLSWD--HETIIRLQLWDIAGQ 518 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee-------------------~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQ 518 (663)
+|+|+|+.|+|||||+++|+....... ....+.+......+.+. +...+.++||||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 699999999999999999987543321 11222222222222222 122588999999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCC
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IAN 587 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~V 587 (663)
.+|...+..++..+|++|+|||+++..++.. ..|+..+.. .++|+|+|+||+|+.... ...
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~ 153 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRLILELKLPPNDAYFKLRH 153 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccCcccccCCHHHHHHHHHH
Confidence 9999899999999999999999998877654 344444331 348999999999975211 111
Q ss_pred CHHHHHHHHHHcCC------Ce----EEEEeCCCCcCHH--------HHHHHHHHH
Q psy4094 588 NPAKIDEFIKEHNF------SG----WFETSAKDNINID--------DAAKTLVQK 625 (663)
Q Consensus 588 s~eei~qlak~~g~------i~----ffEtSAKtGeNVe--------ELFe~IIr~ 625 (663)
..+++..++..++. .+ ++++|++.++.+. +|++.|++.
T Consensus 154 ~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~ 209 (213)
T cd04167 154 IIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSN 209 (213)
T ss_pred HHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhh
Confidence 22344445554443 22 6789999998765 555555444
No 194
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.65 E-value=5.6e-16 Score=149.21 Aligned_cols=148 Identities=17% Similarity=0.211 Sum_probs=108.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc------hhhhHHHHH--h
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER------FGNMTRVYY--K 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr------frsl~~~~~--r 530 (663)
++|+++|.++||||||+|++.+........++.+++.....+.+.+. .+.++|+||.-. .......|+ .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~---~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ---QVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE---EEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc---eEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 58999999999999999999998877777888888888878887764 689999999422 123444444 5
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
..|++|+|+|+++.+ +-.++..++.+ .++|+|+|.||+|+...+ . ..-....+.+.+++ +++.+||+
T Consensus 78 ~~D~ii~VvDa~~l~---r~l~l~~ql~e-------~g~P~vvvlN~~D~a~~~-g-~~id~~~Ls~~Lg~-pvi~~sa~ 144 (156)
T PF02421_consen 78 KPDLIIVVVDATNLE---RNLYLTLQLLE-------LGIPVVVVLNKMDEAERK-G-IEIDAEKLSERLGV-PVIPVSAR 144 (156)
T ss_dssp SSSEEEEEEEGGGHH---HHHHHHHHHHH-------TTSSEEEEEETHHHHHHT-T-EEE-HHHHHHHHTS--EEEEBTT
T ss_pred CCCEEEEECCCCCHH---HHHHHHHHHHH-------cCCCEEEEEeCHHHHHHc-C-CEECHHHHHHHhCC-CEEEEEeC
Confidence 899999999998743 22234444443 359999999999986644 1 12235667777885 89999999
Q ss_pred CCcCHHHHHHHH
Q psy4094 611 DNINIDDAAKTL 622 (663)
Q Consensus 611 tGeNVeELFe~I 622 (663)
+++|++++++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999875
No 195
>KOG0462|consensus
Probab=99.65 E-value=7.4e-16 Score=170.15 Aligned_cols=164 Identities=15% Similarity=0.247 Sum_probs=136.8
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh---------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH---------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg---------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr 520 (663)
+...++.||.+...|||||+.|++. +....+..++|++--....+.+.+.+.+.|+++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5667999999999999999999983 1223356778888777777777655578999999999999
Q ss_pred hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC
Q psy4094 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN 600 (663)
Q Consensus 521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g 600 (663)
|.....+.+..|||+|||+|+..+-.-+.+..++..+. .++.||.|.||+|++.++.+....++.+++...+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--------~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--------AGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--------cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999998888887 4588999999999998774444555555555444
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
.+.+.+||++|.|++++|+.|++++..
T Consensus 210 -~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 210 -AEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred -cceEEEEeccCccHHHHHHHHHhhCCC
Confidence 479999999999999999999998854
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=4.8e-15 Score=171.25 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=111.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc--------hhhhHHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--------FGNMTRVY 528 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--------frsl~~~~ 528 (663)
..+|+|+|.++||||||+++|++.... ....++++.+.....+.+++ ..+.+|||+|.+. +......+
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG---TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC---EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999986542 23345566565555555554 4689999999763 34455667
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
++.||++|+|||+++.-.... ..|+..++. .++|+|||+||+|+.... .....+. ..+....|+||
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~~-----~~~~~~~-~lg~~~~~~iS 417 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQASE-----YDAAEFW-KLGLGEPYPIS 417 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccch-----hhHHHHH-HcCCCCeEEEE
Confidence 899999999999987433222 245555542 468999999999985422 1222222 23433568999
Q ss_pred CCCCcCHHHHHHHHHHHHHh
Q psy4094 609 AKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile 628 (663)
|++|.||+++|++|++.+..
T Consensus 418 A~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCCCchHHHHHHHHhccc
Confidence 99999999999999998865
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.65 E-value=8.8e-16 Score=166.84 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=108.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCC-------------------------------CCccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFF-------------------------------SPHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~f-------------------------------see~~~TigiDf~~ktV~vdg 504 (663)
+..++|+|+|+.++|||||+++|+...- .++..++++++.....+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 3458999999999999999999983211 123356666676666665543
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
+.+.|||||||++|...+...+..+|++|||+|+++...+.... .++..+. .. ...++|||+||+|+...
T Consensus 84 ---~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~-----~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 84 ---YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLAR-TL-----GINQLIVAINKMDAVNY 154 (425)
T ss_pred ---eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHH-Hc-----CCCeEEEEEEccccccc
Confidence 68999999999998776666788999999999999732222211 2222222 11 11468999999999652
Q ss_pred C---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHHHH
Q psy4094 584 G---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDAAK 620 (663)
Q Consensus 584 r---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeELFe 620 (663)
. +....+++.+++...++ .++|++||++|.|+++++.
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 1 12234566677766664 4799999999999998553
No 198
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=4.8e-15 Score=160.81 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=118.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch-------hhhHHHHHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-------GNMTRVYYK 530 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-------rsl~~~~~r 530 (663)
...|+|||.++||||||++++.+........+..+.....-.+.+.+. ..+.|+||||...- ....-.++.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~--~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE--RSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC--cEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 348999999999999999999976543333333333333334444432 35899999996431 111223578
Q ss_pred cCcEEEEEEeCC---CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEE
Q psy4094 531 EAVGAFIVFDVT---RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-SGWFE 606 (663)
Q Consensus 531 ~ADgaILVyDVT---d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-i~ffE 606 (663)
.+|++|+|+|++ +...++.+..|+.++..+.. ...+.|+|||+||+|+.... ...+.+..+...++. ..+|.
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~--~L~~kP~IlVlNKiDl~~~~--el~~~l~~l~~~~~~~~~Vi~ 312 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSP--KLAEKPRWLVFNKIDLLDEE--EAEERAKAIVEALGWEGPVYL 312 (390)
T ss_pred hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhh--hhcCCCEEEEEeCCccCChH--HHHHHHHHHHHHhCCCCCEEE
Confidence 899999999998 55678888889888886521 12458999999999986532 223445555555443 26899
Q ss_pred EeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 607 TSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
+||+++.||++++++|++.+.....
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhhCcc
Confidence 9999999999999999998876543
No 199
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.64 E-value=2.2e-15 Score=171.05 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=113.2
Q ss_pred eCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh------HHHHHh--cCcEEE
Q psy4094 465 GELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM------TRVYYK--EAVGAF 536 (663)
Q Consensus 465 Gd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl------~~~~~r--~ADgaI 536 (663)
|.+|||||||+|++.+..+.....++++.+.....+.+++. .+++|||||+.++... ...|+. .+|++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~---~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE---DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe---EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 89999999999999998776667788888888777777664 5899999999877543 344443 789999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|+|.++.+ +...|..++.+ .++|+|+|+||+|+.+.+ .+ ..+.+.+.+..++ +++++||++|+|++
T Consensus 78 ~VvDat~le---r~l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~-~i-~~d~~~L~~~lg~-pvv~tSA~tg~Gi~ 144 (591)
T TIGR00437 78 NVVDASNLE---RNLYLTLQLLE-------LGIPMILALNLVDEAEKK-GI-RIDEEKLEERLGV-PVVPTSATEGRGIE 144 (591)
T ss_pred EEecCCcch---hhHHHHHHHHh-------cCCCEEEEEehhHHHHhC-CC-hhhHHHHHHHcCC-CEEEEECCCCCCHH
Confidence 999998743 22233333331 358999999999986544 22 2456778888884 89999999999999
Q ss_pred HHHHHHHHHH
Q psy4094 617 DAAKTLVQKI 626 (663)
Q Consensus 617 ELFe~IIr~I 626 (663)
++|+++++.+
T Consensus 145 eL~~~i~~~~ 154 (591)
T TIGR00437 145 RLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.64 E-value=6.2e-15 Score=148.88 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=103.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hhHHHHHhcC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NMTRVYYKEA 532 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl~~~~~r~A 532 (663)
+|+|+|.+|||||||+++|.+........+..+.+...-.+.+.+ ..+++||+||+.+.. .....+++++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG---AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC---eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 799999999999999999998653322223333344444455554 579999999975332 2334578999
Q ss_pred cEEEEEEeCCCcc-cHHHHHHHHHHHH-------------------------------------hhcC------------
Q psy4094 533 VGAFIVFDVTRAA-TFDAVLKWKQDLD-------------------------------------AKVT------------ 562 (663)
Q Consensus 533 DgaILVyDVTd~~-SFe~L~~wieeL~-------------------------------------~~~~------------ 562 (663)
|++|+|+|+++.. ..+.+...+..+. ..+.
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999998765 3333322221110 0000
Q ss_pred ------------CCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 563 ------------LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 563 ------------~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
..+...+|+|+|+||+|+.. .+++..++.. ..++++||++|.|++++|+.|.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 00123479999999999843 3455555443 2589999999999999999998865
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.63 E-value=2.3e-15 Score=148.41 Aligned_cols=149 Identities=19% Similarity=0.169 Sum_probs=101.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCC-------------------------------CccccceeeeceeEEEecCCceeE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFS-------------------------------PHYRATIGVDFALKVLSWDHETII 508 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fs-------------------------------ee~~~TigiDf~~ktV~vdge~~v 508 (663)
+|+|||+.|+|||||+++|+...-. .+..+.++++.....+.+.+ .
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK---R 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC---c
Confidence 5899999999999999999742211 11224555555555555544 4
Q ss_pred EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---C
Q psy4094 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---I 585 (663)
Q Consensus 509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---~ 585 (663)
.+.||||||+++|...+...++.+|++|+|+|++++..-+... +...+.. . ...++|+|+||+|+.... .
T Consensus 78 ~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~-~-----~~~~iIvviNK~D~~~~~~~~~ 150 (208)
T cd04166 78 KFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSL-L-----GIRHVVVAVNKMDLVDYSEEVF 150 (208)
T ss_pred eEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHH-c-----CCCcEEEEEEchhcccCCHHHH
Confidence 6889999999998777777889999999999998764322222 1122221 0 113578899999986422 1
Q ss_pred CCCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHHH
Q psy4094 586 ANNPAKIDEFIKEHNF--SGWFETSAKDNINIDDA 618 (663)
Q Consensus 586 ~Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeEL 618 (663)
.....++..++..+++ .++|+|||++|.|+.+.
T Consensus 151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 1223455666677664 35899999999999864
No 202
>KOG0076|consensus
Probab=99.63 E-value=6.1e-16 Score=150.85 Aligned_cols=162 Identities=23% Similarity=0.318 Sum_probs=127.0
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC-------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ-------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYY 529 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~-------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~ 529 (663)
..|.|+|+|..++|||||+.+.... --.....+|+|.......+. + ..|.+||.+||+..+++|..||
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--~---~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--N---APLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--c---ceeEEEEcCChHHHHHHHHHHH
Confidence 4589999999999999999887532 11234567777776665554 3 4699999999999999999999
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH---HcC--CCeE
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK---EHN--FSGW 604 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak---~~g--~i~f 604 (663)
..|+++|+++|.+|++.|+....-++.+.. .....++|+++.+||.|+... +..+++...+. ..+ ...|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~---~E~leg~p~L~lankqd~q~~---~~~~El~~~~~~~e~~~~rd~~~ 164 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVE---NEKLEGAPVLVLANKQDLQNA---MEAAELDGVFGLAELIPRRDNPF 164 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHH---HHHhcCCchhhhcchhhhhhh---hhHHHHHHHhhhhhhcCCccCcc
Confidence 999999999999999999887765555543 234578999999999999773 34555554444 221 1469
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
..|||.+|+||++..+|++..+..+
T Consensus 165 ~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 165 QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999988765
No 203
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.62 E-value=6.5e-15 Score=167.82 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=115.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
-|+++|+.++|||||+++|.+ +.+.++..++++++.....+...+. ..+.|||+|||++|...+...+..+|++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 589999999999999999986 4555667777877776555555433 35899999999999888888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCC--CeEEEEeCCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG-IANNPAKIDEFIKEHNF--SGWFETSAKDN 612 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der-~~Vs~eei~qlak~~g~--i~ffEtSAKtG 612 (663)
+|+|+++...-+.. ..+..+.. .++| +|||+||+|+.+.. .....+++..++...++ .++|++||++|
T Consensus 80 LVVda~eg~~~qT~-ehl~il~~-------lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 80 LVVACDDGVMAQTR-EHLAILQL-------TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEEECCCCCcHHHH-HHHHHHHH-------cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 99999875332222 12222221 2355 57999999996532 12234556666665553 57999999999
Q ss_pred cCHHHHHHHHHHHHH
Q psy4094 613 INIDDAAKTLVQKIL 627 (663)
Q Consensus 613 eNVeELFe~IIr~Il 627 (663)
.|+++|++.|.+...
T Consensus 152 ~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 152 RGIDALREHLLQLPE 166 (614)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999986543
No 204
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.62 E-value=2.1e-15 Score=149.96 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=100.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC-------------------------------CCCccccceeeeceeEEEecCCceeE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF-------------------------------FSPHYRATIGVDFALKVLSWDHETII 508 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~-------------------------------fsee~~~TigiDf~~ktV~vdge~~v 508 (663)
+|+|+|+.++|||||+.+|+... ...+..+.++.+.....+.+.+ .
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~---~ 77 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK---Y 77 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC---e
Confidence 48999999999999999996311 1122344555566566666544 5
Q ss_pred EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
.+.+|||+|+.+|...+...++.+|++|+|+|+++.. ..+....|. .+.. ....|+|+|+||+|+.
T Consensus 78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART------LGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH------cCCCeEEEEEEccccc
Confidence 8999999999988877777888999999999999852 112222222 1221 1126899999999997
Q ss_pred CCC-----CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHH
Q psy4094 582 KEG-----IANNPAKIDEFIKEHNF----SGWFETSAKDNINID 616 (663)
Q Consensus 582 der-----~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVe 616 (663)
... +....+++..++...++ .++++|||++|.||+
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 321 11123344445555554 569999999999987
No 205
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.60 E-value=2.3e-14 Score=144.59 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=83.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCC----------------CCccccceeeeceeEEEecCC-------ceeEEEEEEeCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFF----------------SPHYRATIGVDFALKVLSWDH-------ETIIRLQLWDIA 516 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~f----------------see~~~TigiDf~~ktV~vdg-------e~~vkLqIwDTp 516 (663)
+|+|+|+.++|||||+.+|+...- ..+..+.+++......+.+.. +..+.++|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999985321 112223344333333333331 125789999999
Q ss_pred CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
||++|......+++.+|++|+|||++++...+....|..... .++|+|||+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--------~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--------ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--------cCCCEEEEEECCCcc
Confidence 999999999999999999999999999877766444433222 348999999999986
No 206
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.59 E-value=1.9e-14 Score=142.01 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=102.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG 522 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr 522 (663)
++|+++|+.++|||||+++|+... ...+..+.++++.....+..++ ..+.++||||+.+|.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~---~~i~~iDtPG~~~~~ 79 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETAN---RHYAHVDCPGHADYI 79 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCC---eEEEEEECcCHHHHH
Confidence 799999999999999999998531 0122345555555444444333 478999999999998
Q ss_pred hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHHHHc
Q psy4094 523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFIKEH 599 (663)
Q Consensus 523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qlak~~ 599 (663)
......+..+|++|+|+|+.....-+... ++..+.. .++| +|+|.||+|+.... .....+++..++...
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-------~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQTRE-HLLLARQ-------VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH-------cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 88888889999999999998764433322 2233332 3466 78999999985322 112234566676666
Q ss_pred CC----CeEEEEeCCCCcCHH
Q psy4094 600 NF----SGWFETSAKDNINID 616 (663)
Q Consensus 600 g~----i~ffEtSAKtGeNVe 616 (663)
++ ++++++||++|.|+.
T Consensus 152 g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred cccccCCeEEEeeCccccCCC
Confidence 54 689999999999853
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.59 E-value=1.1e-14 Score=158.12 Aligned_cols=165 Identities=19% Similarity=0.171 Sum_probs=107.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCC---CCccccceeeeceeEEE--------------ec----CCc-----eeEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVL--------------SW----DHE-----TIIRL 510 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~f---see~~~TigiDf~~ktV--------------~v----dge-----~~vkL 510 (663)
..++|+++|+.++|||||+++|.+... .++..+.++++.....+ .. ++. ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 458999999999999999999865322 22323333322211100 01 110 12579
Q ss_pred EEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCH
Q psy4094 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNP 589 (663)
Q Consensus 511 qIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~ 589 (663)
.|||+|||++|...+...+..+|++|||+|++++.........+..+.. . ...++|+|+||+|+.... .....
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~----~--gi~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI----I--GIKNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH----c--CCCeEEEEEEccccCCHHHHHHHH
Confidence 9999999999998888889999999999999975311111222222221 1 114689999999987532 11123
Q ss_pred HHHHHHHHHcC--CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 590 AKIDEFIKEHN--FSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 590 eei~qlak~~g--~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
+++..++..+. .++++++||++|+|+++++++|...+.
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 44455554431 247999999999999999999988654
No 208
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.58 E-value=3.1e-15 Score=164.74 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=111.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC-------------------------------CCCccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF-------------------------------FSPHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~-------------------------------fsee~~~TigiDf~~ktV~vdg 504 (663)
+..++|+++|+.++|||||+.+|+... ..++..+.++++.....+..+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~- 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT- 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC-
Confidence 345899999999999999999887311 122344556666655554443
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCC-
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQPK- 582 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~d- 582 (663)
...+.|+|+|||++|...+...+..+|++|||+|+++ ..|+....|..+.+.|+......++ ++|||+||+|+.+
T Consensus 84 --~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 --KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160 (447)
T ss_pred --CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch
Confidence 3689999999999999999999999999999999987 3343322222222222211122456 4788999999862
Q ss_pred ----CCCCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHH
Q psy4094 583 ----EGIANNPAKIDEFIKEHNF----SGWFETSAKDNINIDD 617 (663)
Q Consensus 583 ----er~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeE 617 (663)
.++....++++.++...|+ ++|+++||++|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 2223346778888888774 5799999999999864
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.58 E-value=2e-14 Score=156.52 Aligned_cols=166 Identities=19% Similarity=0.196 Sum_probs=106.9
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC---CCCCccccceeeeceeEEEec------------------C--C---ceeE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGVDFALKVLSW------------------D--H---ETII 508 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~---~fsee~~~TigiDf~~ktV~v------------------d--g---e~~v 508 (663)
.+..++|+++|+.++|||||+.+|.+. ...++..+.++++.......+ + + ....
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 445699999999999999999888653 122233344443322111111 0 1 0025
Q ss_pred EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-C
Q psy4094 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-A 586 (663)
Q Consensus 509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~ 586 (663)
.++|||||||++|..........+|++|+|+|++++. ..+....| ..+.. . ...++|+|+||+|+..... .
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~-~-----~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDI-I-----GIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHH-c-----CCCcEEEEEEeeccccchhHH
Confidence 7899999999998776666667789999999999753 22222222 12221 0 1136899999999865321 1
Q ss_pred CCHHHHHHHHHHcC--CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 587 NNPAKIDEFIKEHN--FSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 587 Vs~eei~qlak~~g--~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
...+++..++..+. ..++|++||++|.|+++||++|...+.
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 12244555554331 257999999999999999999988764
No 210
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=6.7e-14 Score=137.56 Aligned_cols=156 Identities=32% Similarity=0.401 Sum_probs=125.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCC--------CC----ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFF--------SP----HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN 523 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~f--------se----e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs 523 (663)
....||+|+|.-++||||+++++..... .. ....|+.+||....+..+ ..+.++|||||+||+.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~----~~v~LfgtPGq~RF~f 83 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED----TGVHLFGTPGQERFKF 83 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc----ceEEEecCCCcHHHHH
Confidence 3457999999999999999999986442 11 223567778777666533 4589999999999999
Q ss_pred hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CC
Q psy4094 524 MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FS 602 (663)
Q Consensus 524 l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i 602 (663)
+|..+++++.++|+++|.+.+..| .....+..+... ..+|+++++||.||.... ..+.++++..... -.
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~------~~ip~vVa~NK~DL~~a~---ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR------NPIPVVVAINKQDLFDAL---PPEKIREALKLELLSV 153 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc------cCCCEEEEeeccccCCCC---CHHHHHHHHHhccCCC
Confidence 999999999999999999999998 555555555521 229999999999999865 7788888887762 36
Q ss_pred eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 603 GWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 603 ~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
+.|+++|.+++++.+.++.+...
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ceeeeecccchhHHHHHHHHHhh
Confidence 89999999999999988888765
No 211
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.57 E-value=4.6e-14 Score=164.52 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=115.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh----------hHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN----------MTRV 527 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs----------l~~~ 527 (663)
.++|+++|++|||||||+|++.+........+.++++.....+..++ ..+.+||+||+.++.. +...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~---~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD---HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc---eEEEEEECCCccccccccccccHHHHHHHH
Confidence 37899999999999999999998766544556666665555555443 5789999999876642 1233
Q ss_pred HH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094 528 YY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF 605 (663)
Q Consensus 528 ~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff 605 (663)
++ ..+|++|+|+|.++.+. ...|..++.+ .++|+|+|+||+|+.+.+ . ......++.+.+++ +++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e-------~giPvIvVlNK~Dl~~~~-~-i~id~~~L~~~LG~-pVv 146 (772)
T PRK09554 80 YILSGDADLLINVVDASNLER---NLYLTLQLLE-------LGIPCIVALNMLDIAEKQ-N-IRIDIDALSARLGC-PVI 146 (772)
T ss_pred HHhccCCCEEEEEecCCcchh---hHHHHHHHHH-------cCCCEEEEEEchhhhhcc-C-cHHHHHHHHHHhCC-CEE
Confidence 43 37999999999988543 2234455542 358999999999987544 2 24556778888885 899
Q ss_pred EEeCCCCcCHHHHHHHHHHHH
Q psy4094 606 ETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~I 626 (663)
++||.+|+|++++++.+.+..
T Consensus 147 piSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhh
Confidence 999999999999999987754
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.57 E-value=5.2e-14 Score=142.80 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=82.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCC------------------CccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFS------------------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fs------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
+|+|+|+.|+|||||+++|+...-. .+..+.+++......+.+.+ +.+++|||||+.+|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~---~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED---TKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC---EEEEEEeCCCccch
Confidence 5899999999999999999853110 11222333333344444433 68999999999999
Q ss_pred hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
...+..+++.+|++|+|+|+++...... ..|+..+.. .++|+|+|+||+|+..
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~-~~~~~~~~~-------~~~P~iivvNK~D~~~ 130 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQAQT-RILWRLLRK-------LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccccC
Confidence 9999999999999999999998765433 344444442 3589999999999864
No 213
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.56 E-value=3.4e-14 Score=161.22 Aligned_cols=155 Identities=21% Similarity=0.194 Sum_probs=102.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCc----cccceeeeceeEEEec--CCceeE----------EEEEEeCCCccchh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPH----YRATIGVDFALKVLSW--DHETII----------RLQLWDIAGQERFG 522 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee----~~~TigiDf~~ktV~v--dge~~v----------kLqIwDTpGQErfr 522 (663)
-.|+|+|+.++|||||+++|.+..+... +.+++|..+....... .+. .+ .+.|||||||+.|.
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGP-LKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccce-eccccccccccCCEEEEECCChHHHH
Confidence 4699999999999999999987654322 2334554433221110 010 01 26899999999999
Q ss_pred hhHHHHHhcCcEEEEEEeCCC---cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCC----------
Q psy4094 523 NMTRVYYKEAVGAFIVFDVTR---AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANN---------- 588 (663)
Q Consensus 523 sl~~~~~r~ADgaILVyDVTd---~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs---------- 588 (663)
.++..+++.+|++|||||+++ +.+++.+. .+. ..++|+|+|+||+|+..... ...
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~-------~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILK-------RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHH-------HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999999999999999999998 34444432 222 13589999999999853110 000
Q ss_pred ----H-------HHHHHHHHHc--------------CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 589 ----P-------AKIDEFIKEH--------------NFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 589 ----~-------eei~qlak~~--------------g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
. .++..++..+ +..+++++||++|.|++++++.+...
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0 0111122222 23579999999999999999988653
No 214
>KOG0074|consensus
Probab=99.55 E-value=1.9e-14 Score=136.90 Aligned_cols=159 Identities=24% Similarity=0.286 Sum_probs=123.6
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...++|+++|-.++|||||+.++.+... .+..+|.| |..+.+..++. ++|++||++||...+..|..||.+.|++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g~--f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDGT--FHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecCc--EEEEEEecCCccccchhhhhhhhccceE
Confidence 4569999999999999999999876532 34455655 77888888874 8999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC----CeEEEEeCCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF----SGWFETSAKD 611 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~----i~ffEtSAKt 611 (663)
|+|+|.+|...|+.+..-+.+|.. ......+|+++.+||.|+.-+- ..+++..-++..++ ..+-+|||..
T Consensus 90 IyVIDS~D~krfeE~~~el~ELle---eeKl~~vpvlIfankQdlltaa---~~eeia~klnl~~lrdRswhIq~csals 163 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLE---EEKLAEVPVLIFANKQDLLTAA---KVEEIALKLNLAGLRDRSWHIQECSALS 163 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhh---hhhhhccceeehhhhhHHHhhc---chHHHHHhcchhhhhhceEEeeeCcccc
Confidence 999999999999988765555553 2334569999999999986532 33333333333322 3567899999
Q ss_pred CcCHHHHHHHHHHH
Q psy4094 612 NINIDDAAKTLVQK 625 (663)
Q Consensus 612 GeNVeELFe~IIr~ 625 (663)
++++..-.+|+...
T Consensus 164 ~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 164 LEGSTDGSDWVQSN 177 (185)
T ss_pred ccCccCcchhhhcC
Confidence 99999888887653
No 215
>PRK12736 elongation factor Tu; Reviewed
Probab=99.54 E-value=8.5e-14 Score=150.65 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=111.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
.+..++|+++|+.++|||||+++|++.. ..++..+.++++.....+..+ ...+.|||||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~---~~~i~~iDtPGh 85 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE---KRHYAHVDCPGH 85 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC---CcEEEEEECCCH
Confidence 3456899999999999999999998521 112334555555544443332 346899999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEF 595 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~ql 595 (663)
++|.......+..+|++|+|+|+++...-+....| ..+.. .++| +|||+||+|+.... .....+++..+
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~-~~~~~-------~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQ-------VGVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-HHHHH-------cCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 99987777778899999999999875443333222 23331 3577 67899999986422 11123456667
Q ss_pred HHHcCC----CeEEEEeCCCCc--------CHHHHHHHHHHHHH
Q psy4094 596 IKEHNF----SGWFETSAKDNI--------NIDDAAKTLVQKIL 627 (663)
Q Consensus 596 ak~~g~----i~ffEtSAKtGe--------NVeELFe~IIr~Il 627 (663)
+...++ ++++++||++|. ++.+|++.+.+.+.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 666664 579999999983 57777777776654
No 216
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=7.8e-14 Score=150.70 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=102.5
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC----------------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ----------------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~----------------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
.+..++|+++|+.++|||||+++|++. ...++..+.++++.....+. .. ...+.|||||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~--~~-~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE--TE-NRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc--CC-CEEEEEEECCch
Confidence 345689999999999999999999732 11233446666665444433 22 357899999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEG--IANNPAKIDEF 595 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der--~~Vs~eei~ql 595 (663)
++|...+...+..+|++|+|+|++++...+....| ..+.. .++|.| +|+||+|+.+.. .....+++..+
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-~~~~~-------~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI-LLARQ-------VGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-------cCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 99987777777889999999999985444433222 22321 246755 789999986532 11123467777
Q ss_pred HHHcCC----CeEEEEeCCCCc
Q psy4094 596 IKEHNF----SGWFETSAKDNI 613 (663)
Q Consensus 596 ak~~g~----i~ffEtSAKtGe 613 (663)
+..+++ ++++++||.+|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 777764 689999999875
No 217
>PRK12735 elongation factor Tu; Reviewed
Probab=99.53 E-value=1.1e-13 Score=149.81 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=110.4
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC-------C---------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ-------F---------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~-------~---------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
.+..++|+++|+.++|||||+++|++. . ..++..+.++++.....+..++ ..+.|+|||||
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~---~~i~~iDtPGh 85 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN---RHYAHVDCPGH 85 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC---cEEEEEECCCH
Confidence 345689999999999999999999851 1 1123355666665444444333 46899999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEG--IANNPAKIDEF 595 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der--~~Vs~eei~ql 595 (663)
++|.......+..+|++|+|+|+.+...-+.. .++..+. ..++|.| +|+||+|+.... .....+++..+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~-------~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLAR-------QVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHH-------HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 99887777788899999999999875433332 2333333 1347755 689999996421 11223456677
Q ss_pred HHHcCC----CeEEEEeCCCCc----------CHHHHHHHHHHHH
Q psy4094 596 IKEHNF----SGWFETSAKDNI----------NIDDAAKTLVQKI 626 (663)
Q Consensus 596 ak~~g~----i~ffEtSAKtGe----------NVeELFe~IIr~I 626 (663)
+..+++ .+|+++||++|. ++.+|++.|.+.+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 777653 579999999985 4667777776654
No 218
>KOG1707|consensus
Probab=99.52 E-value=3.1e-14 Score=158.46 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=122.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..++|+|+|+.||||||||..++.+.|.++-.+-... ......+..+ .+...|.|+...+.-+.....-+++||++.
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe-~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPE-NVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcC-cCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 3489999999999999999999999887654433221 1111222222 355889999877666666678899999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CCeEEEEeCCCCcC
Q psy4094 537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FSGWFETSAKDNIN 614 (663)
Q Consensus 537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i~ffEtSAKtGeN 614 (663)
+||+++++.+++.+. .|+..|++... ...++||||||||+|+...........+..+...+. +-..|+|||++..|
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~--~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFG--DYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccC--CCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 999999999999996 89999986531 225799999999999977653312223445554443 22469999999999
Q ss_pred HHHHHHHHHHHHH
Q psy4094 615 IDDAAKTLVQKIL 627 (663)
Q Consensus 615 VeELFe~IIr~Il 627 (663)
+.|+|....+.++
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999998877654
No 219
>PRK13351 elongation factor G; Reviewed
Probab=99.51 E-value=1.5e-13 Score=158.06 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=87.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCC-------------CC-----ccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFF-------------SP-----HYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~f-------------se-----e~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
+...+|+|+|+.|+|||||+++|+...- .. +....+++......+.+. .+.++||||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~---~~~i~liDtPG 82 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD---NHRINLIDTPG 82 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC---CEEEEEEECCC
Confidence 3567999999999999999999985211 00 011222333333344443 36899999999
Q ss_pred ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
+.+|...+..+++.+|++|+|+|+++...++....|.. +. ..++|+|+|+||+|+...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~-------~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-AD-------RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH-------hcCCCEEEEEECCCCCCC
Confidence 99999999999999999999999999888777666633 33 135899999999998653
No 220
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.51 E-value=2e-13 Score=137.53 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=99.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccc--------------cc---------eeeeceeE---------------EEe
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYR--------------AT---------IGVDFALK---------------VLS 501 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~--------------~T---------igiDf~~k---------------tV~ 501 (663)
||+|+|+.++|||||+.+|..+.|..... .. +|.+..-+ .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999999766643111 11 11111111 111
Q ss_pred cCCceeEEEEEEeCCCccchhhhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 502 WDHETIIRLQLWDIAGQERFGNMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 502 vdge~~vkLqIwDTpGQErfrsl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
.. ...+.++|+||+++|.......+. .+|++|+|+|+..+..-.. ..++..+.. .++|+|+|.||+|
T Consensus 81 ~~---~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~-------~~ip~ivvvNK~D 149 (224)
T cd04165 81 KS---SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA-------LNIPVFVVVTKID 149 (224)
T ss_pred eC---CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCEEEEEECcc
Confidence 11 246899999999998766555554 6899999999987654222 233333332 3489999999999
Q ss_pred CCCCC-CCCCHHHHHHHHHH-------------------------cCCCeEEEEeCCCCcCHHHHHHHHH
Q psy4094 580 QPKEG-IANNPAKIDEFIKE-------------------------HNFSGWFETSAKDNINIDDAAKTLV 623 (663)
Q Consensus 580 L~der-~~Vs~eei~qlak~-------------------------~g~i~ffEtSAKtGeNVeELFe~II 623 (663)
+.... .....+++..++.. ...+++|.+||.+|+|+++|...|.
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 85432 12222333333331 1134899999999999999988774
No 221
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.50 E-value=3.6e-13 Score=147.25 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=114.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccch---------hhhHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF---------GNMTRVY 528 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf---------rsl~~~~ 528 (663)
..|+|||.++||||||+||+++.... .+..++++-|-......+.+. .+.++||+|-+.. +......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~---~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR---EFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc---eEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 37999999999999999999997765 456677777877778888775 5999999996532 2344556
Q ss_pred HhcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 529 YKEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE 606 (663)
+..||++|||+|...+-+-.. +..|+ + ..+.|+|||+||+|-.. .+....-+..+|+..++.
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~L---r-------~~~kpviLvvNK~D~~~------~e~~~~efyslG~g~~~~ 144 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKIL---R-------RSKKPVILVVNKIDNLK------AEELAYEFYSLGFGEPVP 144 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHH---H-------hcCCCEEEEEEcccCch------hhhhHHHHHhcCCCCceE
Confidence 788999999999987654333 22333 2 13589999999999642 223333344567778999
Q ss_pred EeCCCCcCHHHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Il 627 (663)
+||.+|.|+.+|++.++..+.
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC
Confidence 999999999999999999874
No 222
>COG1159 Era GTPase [General function prediction only]
Probab=99.48 E-value=3.9e-13 Score=140.55 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=111.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHHHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTRVYY 529 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~~~~ 529 (663)
.--|+|||.++||||||+|++++.+..-....--+.....+.+...+. ..+.++||||-.+-+ ......+
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 357999999999999999999998876433333333444444554443 679999999943222 2233346
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~w-ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
..+|+++||+|+++...- -..| ++.|+. .+.|+|++.||+|..... ......+..+...+.+...+++|
T Consensus 84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~-------~~~pvil~iNKID~~~~~-~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 84 KDVDLILFVVDADEGWGP--GDEFILEQLKK-------TKTPVILVVNKIDKVKPK-TVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred ccCcEEEEEEeccccCCc--cHHHHHHHHhh-------cCCCeEEEEEccccCCcH-HHHHHHHHHHHhhCCcceEEEee
Confidence 789999999999974332 2223 333331 357999999999987654 11234444555556666899999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhh
Q psy4094 609 AKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile~~ 630 (663)
|++|.|++.|.+.+...+.+..
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCC
Confidence 9999999999999988876654
No 223
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.48 E-value=1.7e-13 Score=148.88 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=101.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCC---------------------------------CCccccceeeeceeEEEecCCc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFF---------------------------------SPHYRATIGVDFALKVLSWDHE 505 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~f---------------------------------see~~~TigiDf~~ktV~vdge 505 (663)
++|+++|+.++|||||+.+|+...- .++..+.++++.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 5899999999999999999973210 122334455565555555543
Q ss_pred eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC
Q psy4094 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI 585 (663)
Q Consensus 506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~ 585 (663)
..+.|||||||++|...+...+..+|++|||+|+..+..-+....|.. +.. .+ ..++|||+||+|+.....
T Consensus 80 --~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~-~~~----~~--~~~iivviNK~D~~~~~~ 150 (406)
T TIGR02034 80 --RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYI-ASL----LG--IRHVVLAVNKMDLVDYDE 150 (406)
T ss_pred --eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHH-HHH----cC--CCcEEEEEEecccccchH
Confidence 478999999999998777778899999999999987654333333321 211 11 136899999999864221
Q ss_pred C---CCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHH
Q psy4094 586 A---NNPAKIDEFIKEHNF--SGWFETSAKDNINIDD 617 (663)
Q Consensus 586 ~---Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeE 617 (663)
. ...+++..++...++ .+++++||++|+|+++
T Consensus 151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1 112334444555553 4699999999999986
No 224
>CHL00071 tufA elongation factor Tu
Probab=99.48 E-value=5.7e-13 Score=144.94 Aligned_cols=150 Identities=15% Similarity=0.106 Sum_probs=106.0
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC----------------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ----------------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~----------------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
.+..++|+++|+.++|||||+++|++. ....+..++++++.....+..++ ..+.|.|||||
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---~~~~~iDtPGh 85 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN---RHYAHVDCPGH 85 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC---eEEEEEECCCh
Confidence 455699999999999999999999863 11233446666665554444433 46889999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEF 595 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~ql 595 (663)
.+|...+...+..+|++|+|+|+.....-+... ++..+. ..++| +|+|.||+|+.... .....+++..+
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~-------~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAK-------QVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHH-------HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 999887888889999999999998754333322 223333 13478 77999999986522 11223466677
Q ss_pred HHHcCC----CeEEEEeCCCCcCH
Q psy4094 596 IKEHNF----SGWFETSAKDNINI 615 (663)
Q Consensus 596 ak~~g~----i~ffEtSAKtGeNV 615 (663)
+...++ .+++++||.+|.|+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccc
Confidence 776654 67999999999754
No 225
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.47 E-value=4.3e-13 Score=127.83 Aligned_cols=136 Identities=21% Similarity=0.307 Sum_probs=100.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----cchhhhHHHHHhcCcEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----ERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----Erfrsl~~~~~r~ADga 535 (663)
||+|||..|+|||||++++.+... .|..|..+.|.. .++||||. ..|..-......+||.+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~-------------~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYD-------------NTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecc-------------cEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 899999999999999999988644 455554434322 35788873 33444444455689999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
++|.|.+++.++--- .+. ...+.|+|-|.||+|+..+ ....+.++++++..|+-..|++|+.+|+||
T Consensus 68 ~ll~dat~~~~~~pP-----~fa------~~f~~pvIGVITK~Dl~~~--~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 68 LLLQDATEPRSVFPP-----GFA------SMFNKPVIGVITKIDLPSD--DANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEEecCCCCCccCCc-----hhh------cccCCCEEEEEECccCccc--hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 999999986542211 111 1234899999999999832 246788889999999988999999999999
Q ss_pred HHHHHHHH
Q psy4094 616 DDAAKTLV 623 (663)
Q Consensus 616 eELFe~II 623 (663)
++|.++|-
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999874
No 226
>PLN03126 Elongation factor Tu; Provisional
Probab=99.47 E-value=5.6e-13 Score=148.22 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=106.8
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC----------------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ----------------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~----------------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
.+..++|+++|+.++|||||+++|+.. ...++..+.++++.....+..++ ..+.|||+|||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~---~~i~liDtPGh 154 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN---RHYAHVDCPGH 154 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC---cEEEEEECCCH
Confidence 456789999999999999999999851 11234455666665555555443 47899999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEF 595 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~ql 595 (663)
++|...+...+..+|++|||+|+.+...-+....| ..+.. .++| +|||.||+|+.... .....+++..+
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~-~~~~~-------~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ-------VGVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-------cCCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 99988888888999999999999987554443333 33331 3577 78899999986521 12223356666
Q ss_pred HHHcC----CCeEEEEeCCCCcCH
Q psy4094 596 IKEHN----FSGWFETSAKDNINI 615 (663)
Q Consensus 596 ak~~g----~i~ffEtSAKtGeNV 615 (663)
+...+ .++|+.+||.+|.|+
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHhcCCCcCcceEEEEEccccccc
Confidence 66653 257999999998654
No 227
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.47 E-value=5.2e-13 Score=147.19 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=107.8
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC-------------------------------CCCCccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ-------------------------------FFSPHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~-------------------------------~fsee~~~TigiDf~~ktV~vdg 504 (663)
...++|+++|+.++|||||+.+|+.. ...++..+.++++.....+..++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 44589999999999999999998741 11223445566666555555543
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc-------HHHHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT-------FDAVLKWKQDLDAKVTLPDGNPIP-CVLLAN 576 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S-------Fe~L~~wieeL~~~~~~~~~~~IP-IILVGN 576 (663)
..+.|+|+|||++|...+...+..+|++|||+|++.+.. -+....|. .+. ..++| +|+|.|
T Consensus 85 ---~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~-------~~gi~~iiv~vN 153 (446)
T PTZ00141 85 ---YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAF-------TLGVKQMIVCIN 153 (446)
T ss_pred ---eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHH-------HcCCCeEEEEEE
Confidence 579999999999998888888999999999999987531 12333333 222 13465 679999
Q ss_pred CCCCCC-----CCCCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHH
Q psy4094 577 KCDQPK-----EGIANNPAKIDEFIKEHNF----SGWFETSAKDNINIDD 617 (663)
Q Consensus 577 KsDL~d-----er~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeE 617 (663)
|+|... +++....+++..++...++ ++|+++||.+|+|+.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 154 KMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 999532 3333445666666666654 5799999999999964
No 228
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.47 E-value=5.7e-13 Score=137.94 Aligned_cols=141 Identities=19% Similarity=0.226 Sum_probs=97.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC------------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF------------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~------------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
+|+|+|+.|+|||||+++++... ...+..+.++++.....+.+.+ ..+.+|||||+.+|
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD---HRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC---EEEEEEECCCcHHH
Confidence 58999999999999999997311 1123345555565566666654 57899999999999
Q ss_pred hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy4094 522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF 601 (663)
Q Consensus 522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~ 601 (663)
...+..+++.+|++|+|+|+.+...-+... ++..+. ..++|+|+|+||+|+.........++++..+....+
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t~~-~~~~~~-------~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~ 149 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQTET-VWRQAD-------RYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPV 149 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHHHHH-HHHHHH-------HcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCce
Confidence 999999999999999999998865433322 223333 245899999999998754322233444444433333
Q ss_pred CeEEEEeCCC
Q psy4094 602 SGWFETSAKD 611 (663)
Q Consensus 602 i~ffEtSAKt 611 (663)
..++++|+..
T Consensus 150 ~~~~Pisa~~ 159 (270)
T cd01886 150 PLQLPIGEED 159 (270)
T ss_pred EEEeccccCC
Confidence 3466777753
No 229
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=2.4e-13 Score=148.72 Aligned_cols=165 Identities=19% Similarity=0.248 Sum_probs=130.1
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHh---------------CCCCCccccceeeeceeEEEecC--CceeEEEEEEeCCC
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVH---------------QFFSPHYRATIGVDFALKVLSWD--HETIIRLQLWDIAG 517 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg---------------~~fsee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpG 517 (663)
.+...++.||.+-..|||||..|++. +..+-+..+++++-.....+.+. +++.+.|+++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34556899999999999999999973 22334566777766655555442 33479999999999
Q ss_pred ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK 597 (663)
Q Consensus 518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak 597 (663)
|.+|.....+.+..|.|+|||+|++.+-.-+.+...+..|. .+.-||-|.||+||+... .....+++-.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle--------~~LeIiPViNKIDLP~Ad---pervk~eIe~ 154 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPAAD---PERVKQEIED 154 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH--------cCcEEEEeeecccCCCCC---HHHHHHHHHH
Confidence 99999888999999999999999999988899988888777 357899999999998865 2333334444
Q ss_pred HcCC--CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 598 EHNF--SGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 598 ~~g~--i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
..|+ ...+.||||+|.||+++++.|++.+..-.
T Consensus 155 ~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 155 IIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred HhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 4443 35799999999999999999999986543
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=1.2e-12 Score=143.23 Aligned_cols=162 Identities=19% Similarity=0.111 Sum_probs=119.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc----------chhh-h
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----------RFGN-M 524 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----------rfrs-l 524 (663)
..+||+|||.++||||||+|+++++.-. ....++.+.|.-...+.+++. ++.++||+|.. .|.. -
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~---~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR---KYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe---EEEEEECCCCCcccccccceEEEeehh
Confidence 4589999999999999999999986544 455677777887888888876 68999999943 3322 2
Q ss_pred HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---CCCCHHHHHHHHHHcCC
Q psy4094 525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG---IANNPAKIDEFIKEHNF 601 (663)
Q Consensus 525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der---~~Vs~eei~qlak~~g~ 601 (663)
....+..+|+|+||+|++.+-+-+.+.- ...+. ..+.++|+|.||+|+.+.. .....+++...+...++
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~-------~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~ 325 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQDLRI-AGLIE-------EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF 325 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHHHHH-HHHHH-------HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC
Confidence 3345678999999999998876655432 12222 2458999999999987642 12223345555556677
Q ss_pred CeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 602 SGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 602 i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
.+.+.+||++|.+++++|+.+....-..
T Consensus 326 a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 326 APIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred CeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 8899999999999999999987765443
No 231
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.45 E-value=2.1e-12 Score=145.22 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=80.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh--CCCC--------------------CccccceeeeceeEEEecCCceeEEEEEEe
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH--QFFS--------------------PHYRATIGVDFALKVLSWDHETIIRLQLWD 514 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg--~~fs--------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwD 514 (663)
...+|+|||+.++|||||+.+|+. +... .+..+++.+......+.+. .+.+++||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~---~~~inliD 85 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR---DCLINLLD 85 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC---CEEEEEEE
Confidence 457999999999999999999973 1100 0111222223333334443 36899999
Q ss_pred CCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 515 TpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
|||+.+|......+++.+|++|+|+|+++...... ..++.... ..++|+|+++||+|+..
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t-~~l~~~~~-------~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT-RKLMEVCR-------LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH-HHHHHHHH-------hcCCCEEEEEECCcccc
Confidence 99999999888889999999999999998643322 23333332 24699999999999754
No 232
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.44 E-value=2.4e-12 Score=126.10 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=99.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceee-ece--eEEEecCCceeEEEEEEeCCCccchhhhHHH-----HHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGV-DFA--LKVLSWDHETIIRLQLWDIAGQERFGNMTRV-----YYK 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Tigi-Df~--~ktV~vdge~~vkLqIwDTpGQErfrsl~~~-----~~r 530 (663)
+||+|+|.+|||||||++.+++..+.......++. ... ...+.... ...+.+||++|.......... .+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK--FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC--CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 79999999999999999999986554332222221 111 11111111 236899999997543222222 366
Q ss_pred cCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC----------CCCHHHHHHHHH--
Q psy4094 531 EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI----------ANNPAKIDEFIK-- 597 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~----------~Vs~eei~qlak-- 597 (663)
++|++|+|.| ..|.... .|+..+.. .+.|+++|+||+|+..... ....+++++.+.
T Consensus 80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~-------~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 80 EYDFFIIISS----TRFSSNDVKLAKAIQC-------MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred CcCEEEEEeC----CCCCHHHHHHHHHHHH-------hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 7898888743 2344433 55565553 2479999999999842110 011222222222
Q ss_pred --HcC--CCeEEEEeCC--CCcCHHHHHHHHHHHHHhhhhh
Q psy4094 598 --EHN--FSGWFETSAK--DNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 598 --~~g--~i~ffEtSAK--tGeNVeELFe~IIr~Ile~~k~ 632 (663)
..+ ...+|.+|+. .+.|+..|.+.|+..+.++++.
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 222 2468999998 6799999999999999887653
No 233
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.44 E-value=3.2e-12 Score=132.12 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=80.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC----------------------CccccceeeeceeEEEecCCceeEEEEEEeCC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS----------------------PHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs----------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTp 516 (663)
.+|+|+|+.|+|||||+++++...-. .+..+.+.+......+.+. .+.++||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~---~~~i~liDTP 79 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR---DCVINLLDTP 79 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC---CEEEEEEECC
Confidence 58999999999999999999742110 0111122222233334433 3689999999
Q ss_pred CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
|+.+|......+++.+|++|+|+|+++...... ..|+..+. ..++|+|+++||+|+....
T Consensus 80 G~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~-------~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 80 GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCR-------LRGIPIITFINKLDREGRD 139 (267)
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHH-------hcCCCEEEEEECCccCCCC
Confidence 999998888888999999999999987644322 23333332 2458999999999986643
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.43 E-value=6.6e-13 Score=147.37 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=101.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCC---------------------------------CccccceeeeceeEEEec
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFS---------------------------------PHYRATIGVDFALKVLSW 502 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs---------------------------------ee~~~TigiDf~~ktV~v 502 (663)
+..++|+++|+.++|||||+.+|+...-. ++..+.++++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45689999999999999999999742110 122334555555555544
Q ss_pred CCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 503 DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 503 dge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
++ ..+.|||||||++|...+...+..+|++|||+|+..+..-+....|.. +. . .+ -.++|||+||+|+..
T Consensus 105 ~~---~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l-~~-~---lg--~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EK---RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFI-AT-L---LG--IKHLVVAVNKMDLVD 174 (474)
T ss_pred CC---cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHH-HH-H---hC--CCceEEEEEeecccc
Confidence 43 478999999999997777777899999999999987543222222221 11 1 11 147899999999864
Q ss_pred CCCC---CCHHHHHHHHHHcC---CCeEEEEeCCCCcCHHHH
Q psy4094 583 EGIA---NNPAKIDEFIKEHN---FSGWFETSAKDNINIDDA 618 (663)
Q Consensus 583 er~~---Vs~eei~qlak~~g---~i~ffEtSAKtGeNVeEL 618 (663)
.... ...+++..++...+ ..+++++||++|.|+.++
T Consensus 175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 3211 11223333344433 357999999999999875
No 235
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.42 E-value=1.5e-12 Score=133.20 Aligned_cols=153 Identities=17% Similarity=0.276 Sum_probs=100.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCc------------------cccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPH------------------YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee------------------~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
+|+|+|+.|+|||||+++++....... ....+++......+.+.+ +.++||||+|+.+|
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~---~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG---HKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC---EEEEEEECcCHHHH
Confidence 589999999999999999975321110 112223333333444433 57999999999999
Q ss_pred hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy4094 522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF 601 (663)
Q Consensus 522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~ 601 (663)
...+..+++.+|++|+|+|+++.........|. .+. ..++|+++|+||+|+.... ..+....+...++.
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~-------~~~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~~ 146 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD-------EAGIPRIIFINKMDRERAD---FDKTLAALQEAFGR 146 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH-------HcCCCEEEEEECCccCCCC---HHHHHHHHHHHhCC
Confidence 888999999999999999999877665554443 222 2358999999999987643 22333444444443
Q ss_pred -CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 602 -SGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 602 -i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
+-.+.+....|.|+..+.+.+...+
T Consensus 147 ~~~~~~ip~~~~~~~~~~vd~~~~~~ 172 (268)
T cd04170 147 PVVPLQLPIGEGDDFKGVVDLLTEKA 172 (268)
T ss_pred CeEEEEecccCCCceeEEEEcccCEE
Confidence 1234445666666655555444433
No 236
>KOG3905|consensus
Probab=99.42 E-value=4.9e-13 Score=141.04 Aligned_cols=167 Identities=19% Similarity=0.316 Sum_probs=132.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC-ceeEEEEEEeCCCccchhhhHHHHHhcC----cE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH-ETIIRLQLWDIAGQERFGNMTRVYYKEA----VG 534 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg-e~~vkLqIwDTpGQErfrsl~~~~~r~A----Dg 534 (663)
+|+|+|+.|+||||||.++.+. +++...-|.+|....|.-+. ....++.+|-..|..-+..+....+... -.
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~---e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGS---ETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred eEEEEccCCCchhHHHHHhhcc---cccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 7999999999999999999874 36667777777655554321 1247899999999988888887776544 37
Q ss_pred EEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCC----------------------------------------------
Q psy4094 535 AFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGN---------------------------------------------- 567 (663)
Q Consensus 535 aILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~---------------------------------------------- 567 (663)
+||+.|+++++. ++.+..|+..+++|+.....+
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 889999999954 788999998888886543221
Q ss_pred -----------CCcEEEEEeCCCCC----------CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 568 -----------PIPCVLLANKCDQP----------KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 568 -----------~IPIILVGNKsDL~----------der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
++||+||++|||+. +++++.++..++.||-.+|. .+|++|++...||+-|+.+|++++
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHh
Confidence 79999999999972 23356677889999999996 699999999999999999999998
Q ss_pred Hhhh
Q psy4094 627 LEND 630 (663)
Q Consensus 627 le~~ 630 (663)
+...
T Consensus 290 yG~~ 293 (473)
T KOG3905|consen 290 YGFP 293 (473)
T ss_pred cCcc
Confidence 7653
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.42 E-value=2.5e-12 Score=139.47 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=107.7
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
...++|+++|+.++|||||+++|+... ..++..+.++++.....+..++ ..+.|+||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~---~~i~~iDtPG~~ 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK---RHYAHVDCPGHA 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC---eEEEEEECCCHH
Confidence 456899999999999999999998621 1123356666665544444333 468899999999
Q ss_pred chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCC--CCCCHHHHHHHH
Q psy4094 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEG--IANNPAKIDEFI 596 (663)
Q Consensus 520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der--~~Vs~eei~qla 596 (663)
+|.......+..+|++|+|+|+.++..-+.. .++..+.. .++|+| ++.||+|+.... ......++..++
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~-------~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ-------VGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHH-------cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence 9887777888999999999999876443332 23333332 347875 689999986421 111223555666
Q ss_pred HHcCC----CeEEEEeCCCCcC----------HHHHHHHHHHH
Q psy4094 597 KEHNF----SGWFETSAKDNIN----------IDDAAKTLVQK 625 (663)
Q Consensus 597 k~~g~----i~ffEtSAKtGeN----------VeELFe~IIr~ 625 (663)
...++ .+++.+||++|.| +..+++.|...
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 65543 5799999998763 45666555543
No 238
>KOG0072|consensus
Probab=99.41 E-value=3.8e-13 Score=128.39 Aligned_cols=160 Identities=22% Similarity=0.279 Sum_probs=117.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
...+|+++|-.|+|||+++-++.-+.. ....+++| |..-.+.+. ++.+++||.+||-..+..|+-||.+.|++|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtig--fnve~v~yK---NLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIG--FNVETVPYK---NLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCC--cCccccccc---cccceeeEccCcccccHHHHHHhcccceEE
Confidence 447999999999999999988764433 24567776 444445543 478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH----cCCCeEEEEeCCC
Q psy4094 537 IVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE----HNFSGWFETSAKD 611 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~w-ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~----~g~i~ffEtSAKt 611 (663)
+|+|.+|++........ +..|. ...-++..++|++||.|....- ...++...+.. .....+|++||.+
T Consensus 91 yVVDssd~dris~a~~el~~mL~----E~eLq~a~llv~anKqD~~~~~---t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQ----EEELQHAKLLVFANKQDYSGAL---TRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhc----cHhhcCceEEEEeccccchhhh---hHHHHHHHhChHHHhhheeEEEeecccc
Confidence 99999998766554433 23333 2233457889999999976532 33333222211 1225799999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
|+|+++.++|+++.+..+
T Consensus 164 g~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ccCCcHHHHHHHHHHhcc
Confidence 999999999999987543
No 239
>PLN03127 Elongation factor Tu; Provisional
Probab=99.41 E-value=3.3e-12 Score=140.95 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=108.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC----------------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ----------------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~----------------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
+..++|+++|+.++|||||+++|.+. ...++..++++++.....+..++ ..+.|+|||||.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~---~~i~~iDtPGh~ 135 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK---RHYAHVDCPGHA 135 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC---eEEEEEECCCcc
Confidence 45689999999999999999999621 11234456777776555554433 478999999999
Q ss_pred chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHH
Q psy4094 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFI 596 (663)
Q Consensus 520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qla 596 (663)
+|...+...+..+|++|||+|+.+...-+. ...+..+. ..++| +|+|.||+|+.... .....+++..++
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~-------~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR-------QVGVPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHH-------HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 987777777788999999999987643333 22222232 23478 57899999986422 011122444555
Q ss_pred HHcCC----CeEEEEeCC---CCcC-------HHHHHHHHHHHHH
Q psy4094 597 KEHNF----SGWFETSAK---DNIN-------IDDAAKTLVQKIL 627 (663)
Q Consensus 597 k~~g~----i~ffEtSAK---tGeN-------VeELFe~IIr~Il 627 (663)
..+++ ++++.+||. +|.| +.+|++.|.+.+.
T Consensus 208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 54432 578888876 5555 6777777766543
No 240
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.41 E-value=1.5e-12 Score=148.64 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=100.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC---------------------------------CccccceeeeceeEEEecC
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS---------------------------------PHYRATIGVDFALKVLSWD 503 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs---------------------------------ee~~~TigiDf~~ktV~vd 503 (663)
..++|+|+|+.++|||||+++|+...-. ++..++++++.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 4589999999999999999999852211 1122344445544445444
Q ss_pred CceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 504 HETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 504 ge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
+ ..+.|+||||+++|...+...+..+|++|||+|+..+..-+....|. .+... ...++|||.||+|+...
T Consensus 103 ~---~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~------~~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 103 K---RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL------GIRHVVLAVNKMDLVDY 172 (632)
T ss_pred C---ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh------CCCeEEEEEEecccccc
Confidence 4 46889999999998777777789999999999998754332222222 22211 12578999999998642
Q ss_pred C---CCCCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHH
Q psy4094 584 G---IANNPAKIDEFIKEHNF--SGWFETSAKDNINIDD 617 (663)
Q Consensus 584 r---~~Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeE 617 (663)
. ......++..+...+++ .+++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1 11122334445555554 4699999999999984
No 241
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.40 E-value=2.4e-12 Score=148.42 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=100.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCC------------------CccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFS------------------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs------------------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
+...+|+|+|+.++|||||+++|+...-. .+..+.++++.....+.+.+ ..++||||||
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~---~~i~liDTPG 84 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG---HRINIIDTPG 84 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC---eEEEEEECCC
Confidence 45679999999999999999999741110 12234566666666666654 5799999999
Q ss_pred ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK 597 (663)
Q Consensus 518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak 597 (663)
+.+|...+..+++.+|++|||+|+++....+...-|. .+. ..++|+|||+||+|+.... ......++..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~-------~~~~p~ivviNK~D~~~~~---~~~~~~~i~~ 153 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWR-QAN-------RYEVPRIAFVNKMDKTGAN---FLRVVNQIKQ 153 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHH-HHH-------HcCCCEEEEEECCCCCCCC---HHHHHHHHHH
Confidence 9999888999999999999999999877766554443 233 1358999999999997643 1223333444
Q ss_pred HcCC---CeEEEEeCCCC
Q psy4094 598 EHNF---SGWFETSAKDN 612 (663)
Q Consensus 598 ~~g~---i~ffEtSAKtG 612 (663)
.++. ...+.+|+..+
T Consensus 154 ~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 154 RLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HhCCCceeEEeccccCCC
Confidence 3333 22456666555
No 242
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.39 E-value=3.5e-12 Score=139.52 Aligned_cols=161 Identities=16% Similarity=0.247 Sum_probs=129.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhC--CC--------------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQ--FF--------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~--~f--------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
..+|+||.+...|||||+..++.+ .| +.+..++|++--....+.+++ ++++|+|||||.+|
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~---~~INIvDTPGHADF 81 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG---TRINIVDTPGHADF 81 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC---eEEEEecCCCcCCc
Confidence 458999999999999999999842 22 224455666666666677766 68999999999999
Q ss_pred hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC
Q psy4094 522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF 601 (663)
Q Consensus 522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~ 601 (663)
.....+.+..+|+++|++|+.+...-+.-..+-+.|. .+++.|||.||+|.+..|......++..++..++.
T Consensus 82 GGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A 153 (603)
T COG1217 82 GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--------LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGA 153 (603)
T ss_pred cchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999877666555555665 34777999999999998866666777777777654
Q ss_pred ------CeEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Q psy4094 602 ------SGWFETSAKDNI----------NIDDAAKTLVQKILEN 629 (663)
Q Consensus 602 ------i~ffEtSAKtGe----------NVeELFe~IIr~Ile~ 629 (663)
+++++.||..|. ++.-||+.|++++..-
T Consensus 154 ~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 154 TDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred ChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 579999999884 8999999999988654
No 243
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=6.2e-12 Score=139.58 Aligned_cols=157 Identities=18% Similarity=0.221 Sum_probs=121.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
.=|+++|+...|||||+..+-.........-.++-....+.+.++....-.|.|+|||||+-|..++.+-..-+|++|||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 36899999999999999999887776666666776777777777511124689999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC--------CeEEEEeCC
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF--------SGWFETSAK 610 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~--------i~ffEtSAK 610 (663)
+|++|.-.-+++... ..+ ...++|+|++.||+|..+.. ...+..-+..+|+ ..|+++||+
T Consensus 86 Va~dDGv~pQTiEAI-~ha-------k~a~vP~iVAiNKiDk~~~n----p~~v~~el~~~gl~~E~~gg~v~~VpvSA~ 153 (509)
T COG0532 86 VAADDGVMPQTIEAI-NHA-------KAAGVPIVVAINKIDKPEAN----PDKVKQELQEYGLVPEEWGGDVIFVPVSAK 153 (509)
T ss_pred EEccCCcchhHHHHH-HHH-------HHCCCCEEEEEecccCCCCC----HHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence 999997655554322 112 24679999999999998543 4444444445554 469999999
Q ss_pred CCcCHHHHHHHHHHHHH
Q psy4094 611 DNINIDDAAKTLVQKIL 627 (663)
Q Consensus 611 tGeNVeELFe~IIr~Il 627 (663)
+|+|+.+|++.|+-..-
T Consensus 154 tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 154 TGEGIDELLELILLLAE 170 (509)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876543
No 244
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.37 E-value=1e-11 Score=131.83 Aligned_cols=167 Identities=19% Similarity=0.240 Sum_probs=107.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCC------CccccceeeeceeEE---------------EecCCceeEEEEEEeCCCc-
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQFFS------PHYRATIGVDFALKV---------------LSWDHETIIRLQLWDIAGQ- 518 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~fs------ee~~~TigiDf~~kt---------------V~vdge~~vkLqIwDTpGQ- 518 (663)
|+|||.++||||||+++|.+..+. ..+.+++|+.+.... ..+++...+.++|||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987643 234556665543221 1123333478999999997
Q ss_pred ---cchhhhHHHH---HhcCcEEEEEEeCCCc-------------c---cHHH----HHHH-HHH---------------
Q psy4094 519 ---ERFGNMTRVY---YKEAVGAFIVFDVTRA-------------A---TFDA----VLKW-KQD--------------- 556 (663)
Q Consensus 519 ---Erfrsl~~~~---~r~ADgaILVyDVTd~-------------~---SFe~----L~~w-iee--------------- 556 (663)
.++..+...| +++||++|+|+|+... + .++. +..| +..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566666665 8999999999999731 0 1111 1122 000
Q ss_pred ---------------------HHhhcCC---C------------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q psy4094 557 ---------------------LDAKVTL---P------------------DGNPIPCVLLANKCDQPKEGIANNPAKIDE 594 (663)
Q Consensus 557 ---------------------L~~~~~~---~------------------~~~~IPIILVGNKsDL~der~~Vs~eei~q 594 (663)
+..++.. . .....|+|+|+||+|+.... +....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~-----~~~~~ 235 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE-----NNISK 235 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH-----HHHHH
Confidence 0000000 0 01357999999999975322 12223
Q ss_pred HHHHcCCCeEEEEeCCCCcCHHHHHH-HHHHHHHhhhhh
Q psy4094 595 FIKEHNFSGWFETSAKDNINIDDAAK-TLVQKILENDKV 632 (663)
Q Consensus 595 lak~~g~i~ffEtSAKtGeNVeELFe-~IIr~Ile~~k~ 632 (663)
+........++.+||+.+.+++++.+ .+++.+......
T Consensus 236 l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f 274 (318)
T cd01899 236 LRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF 274 (318)
T ss_pred HHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence 33344445799999999999999998 688888765443
No 245
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.35 E-value=4.7e-12 Score=129.17 Aligned_cols=171 Identities=22% Similarity=0.268 Sum_probs=109.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh-----hHHHHHhcCc
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-----MTRVYYKEAV 533 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-----l~~~~~r~AD 533 (663)
||+++|..++||||+.+.+..+.... ...-..+.+.....+...+. +.|+|||+|||..+.. .....+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~--~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF--LPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS--CEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC--cEEEEEEcCCccccccccccccHHHHHhccC
Confidence 79999999999999998777654332 22223344555555555554 7899999999976543 4688899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----CCCCHHHHHHHHHHcC--CCeEEE
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----IANNPAKIDEFIKEHN--FSGWFE 606 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----~~Vs~eei~qlak~~g--~i~ffE 606 (663)
++|+|+|+.+.+-.+.+..+...+..... ..+++.+-++.+|+|+..+. +....+.+.+.+...+ .+.|+.
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~--~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQ--YSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHH--HSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHH--hCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 99999999965555554444333332211 24678999999999985421 1112334444555554 246888
Q ss_pred EeCCCCcCHHHHHHHHHHHHHhhhhhhhc
Q psy4094 607 TSAKDNINIDDAAKTLVQKILENDKVQAN 635 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Ile~~k~~~~ 635 (663)
||... +.+-+.|..|++.++.+....+.
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP~~~~le~ 184 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIPNLSTLEN 184 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred ccCcC-cHHHHHHHHHHHHHcccHHHHHH
Confidence 98876 79999999999999877665443
No 246
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.34 E-value=8.3e-12 Score=129.65 Aligned_cols=143 Identities=17% Similarity=0.280 Sum_probs=93.0
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc----------cccceeeeceeEEEecCCceeEEEEEEeCCCccchhh---
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH----------YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN--- 523 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee----------~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs--- 523 (663)
..|+|+|+|+.|+|||||+++|++..+... ...|++++.....+..++. .+.|.||||+|-.++..
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~-~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGV-KLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCE-EEEEEEEecCCccccccchh
Confidence 358999999999999999999998776533 4566666766667766664 68999999999432211
Q ss_pred ----hH-------------------HHHHh--cCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 524 ----MT-------------------RVYYK--EAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 524 ----l~-------------------~~~~r--~ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
+. ...+. .+|+++++++.+.. .+... ...+..+. ..+|+|+|+||
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~--------~~v~vi~VinK 152 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS--------KRVNIIPVIAK 152 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh--------ccCCEEEEEEC
Confidence 10 01222 36677777776542 11111 22233332 14899999999
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 578 CDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 578 sDL~de-r~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
+|+... ......+.+.+.+..+++ .+|.....
T Consensus 153 ~D~l~~~e~~~~k~~i~~~l~~~~i-~~~~~~~~ 185 (276)
T cd01850 153 ADTLTPEELKEFKQRIMEDIEEHNI-KIYKFPED 185 (276)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCC-ceECCCCC
Confidence 998542 113445667788888885 67776553
No 247
>KOG1423|consensus
Probab=99.33 E-value=2.2e-11 Score=128.01 Aligned_cols=168 Identities=20% Similarity=0.194 Sum_probs=110.0
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc------chh-----
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE------RFG----- 522 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE------rfr----- 522 (663)
...+.+.|+|||.++||||||.|.+++...........+.....--+...++ +.+.||||||-. ++.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e--TQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE--TQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc--eEEEEecCCcccccchhhhHHHHHHh
Confidence 3456789999999999999999999998887665555544443434444443 689999999932 111
Q ss_pred -hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC------------CCC-
Q psy4094 523 -NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI------------ANN- 588 (663)
Q Consensus 523 -sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~------------~Vs- 588 (663)
......+.+||++++|+|+++....-.. ..+..+..+ ..+|-|||.||+|....+. ...
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~ 218 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK 218 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccch
Confidence 1223456789999999999974432221 223334433 3488999999999754331 111
Q ss_pred -HHHHHHHHHHc-------------CCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 589 -PAKIDEFIKEH-------------NFSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 589 -~eei~qlak~~-------------g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
.-++++-.... ++..+|.+||++|+||+++-++|+.++....
T Consensus 219 ~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 219 LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred hhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 11111111111 1234899999999999999999998875543
No 248
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.33 E-value=2.4e-11 Score=133.43 Aligned_cols=152 Identities=20% Similarity=0.166 Sum_probs=113.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh--------hHHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN--------MTRVY 528 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs--------l~~~~ 528 (663)
-+||+|+|.++||||||+|.|++..-. ....++.+-|+..-.+.++| +.+.|.||+|..+-.. .....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G---~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG---IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC---EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 489999999999999999999986544 45667777788888888888 5899999999654332 23345
Q ss_pred HhcCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 529 YKEAVGAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
+.+||.+|+|+|.+.... .+....| + ...+.|+++|.||.||.... ..... .......++.+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~---~-------~~~~~~~i~v~NK~DL~~~~---~~~~~----~~~~~~~~i~i 356 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIE---L-------LPKKKPIIVVLNKADLVSKI---ELESE----KLANGDAIISI 356 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHH---h-------cccCCCEEEEEechhccccc---ccchh----hccCCCceEEE
Confidence 788999999999998632 2222122 1 13568999999999997754 11111 21222358999
Q ss_pred eCCCCcCHHHHHHHHHHHHHhh
Q psy4094 608 SAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~Ile~ 629 (663)
||++|.|++.|.+.|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999998877665
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.32 E-value=3.5e-12 Score=143.43 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=80.6
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh--CCCCC------------------ccccceeeeceeEEEecCCceeEEEEEEeC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH--QFFSP------------------HYRATIGVDFALKVLSWDHETIIRLQLWDI 515 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg--~~fse------------------e~~~TigiDf~~ktV~vdge~~vkLqIwDT 515 (663)
....+|+|||+.++|||||+.+|+. +.... ......|+.+....+.++.+ .+.++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~-~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR-DCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC-CeEEEEEEC
Confidence 3457999999999999999999863 11100 00111222333333333322 368999999
Q ss_pred CCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 516 pGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
||+.+|......+++.+|++|+|+|+++...-. ...|+..+. ..++|+|+++||+|+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~-------~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTR-------LRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHH-------hcCCCEEEEEECccccCC
Confidence 999999887888899999999999998753222 233333333 245899999999998653
No 250
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.32 E-value=1.3e-11 Score=137.06 Aligned_cols=168 Identities=19% Similarity=0.343 Sum_probs=127.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC-ceeEEEEEEeCCCccchhhhHHHHHhcC----c
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH-ETIIRLQLWDIAGQERFGNMTRVYYKEA----V 533 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg-e~~vkLqIwDTpGQErfrsl~~~~~r~A----D 533 (663)
-.|+|+|+.++|||||+.+|.+. +++..+.|.+|....+.-++ ....++.||-..|...+..+....+... -
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 37999999999999999998753 45677888888665554332 2246799999998777777776655432 4
Q ss_pred EEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCC-----------------------------------------------
Q psy4094 534 GAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPD----------------------------------------------- 565 (663)
Q Consensus 534 gaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~----------------------------------------------- 565 (663)
++|||.|++.++. ++.+..|+..|+.++....
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 7889999999987 4567777766665542200
Q ss_pred -----------CCCCcEEEEEeCCCCC----------CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094 566 -----------GNPIPCVLLANKCDQP----------KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 566 -----------~~~IPIILVGNKsDL~----------der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr 624 (663)
.-++||+||++|+|.. +++++..++.++.+|-.||+ .+|+||++...|++.|+.+|.+
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHH
Confidence 0058999999999952 12345667788999999996 6999999999999999999999
Q ss_pred HHHhhh
Q psy4094 625 KILEND 630 (663)
Q Consensus 625 ~Ile~~ 630 (663)
+++...
T Consensus 262 ~l~~~~ 267 (472)
T PF05783_consen 262 RLYGFP 267 (472)
T ss_pred HhccCC
Confidence 987654
No 251
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.31 E-value=1.5e-11 Score=136.45 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=110.3
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeEEE---------------ecCCc----e-------
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALKVL---------------SWDHE----T------- 506 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~ktV---------------~vdge----~------- 506 (663)
...++|.++|+..+|||||+..|.+ ..+.++..+.++++...... .+... .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 3458999999999999999999986 33445555555544422211 01100 0
Q ss_pred ----eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 507 ----IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 507 ----~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
...+.|+|+|||++|...+...+..+|++|||+|+.++ ...+....|. .+. .+ + -.++|||.||+|+.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~-~l---g--i~~iIVvlNKiDlv 184 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVE-IM---K--LKHIIILQNKIDLV 184 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHH-Hc---C--CCcEEEEEeccccc
Confidence 13689999999999988888888899999999999975 2333333332 222 11 1 13689999999986
Q ss_pred CCC-CCCCHHHHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 582 KEG-IANNPAKIDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 582 der-~~Vs~eei~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
+.. .....+++..++..+ ...++|++||++|.|+++|++.|...+.
T Consensus 185 ~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 422 111233444444332 2357999999999999999999987554
No 252
>PRK12740 elongation factor G; Reviewed
Probab=99.31 E-value=1.2e-11 Score=141.84 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=81.8
Q ss_pred EeCCCCCHHHHHHHHHhCCC------------------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhH
Q psy4094 464 IGELGAGKTSIIKRYVHQFF------------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMT 525 (663)
Q Consensus 464 LGd~GVGKTSLInrLlg~~f------------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~ 525 (663)
||+.++|||||+++|+...- ..+..+++++......+.+.+ +.++||||||+.+|...+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~---~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG---HKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC---EEEEEEECCCcHHHHHHH
Confidence 69999999999999963211 112234555555556666654 689999999999998888
Q ss_pred HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
..+++.+|++|+|+|+++...+.....|.. +. ..++|+|+|+||+|+..
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~-~~-------~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQ-AE-------KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHHHH-HH-------HcCCCEEEEEECCCCCC
Confidence 999999999999999998877766555532 22 13589999999999864
No 253
>PRK12739 elongation factor G; Reviewed
Probab=99.31 E-value=1.8e-11 Score=141.43 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=89.9
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCC------------------CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFF------------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~f------------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
+...+|+|||+.++|||||+++|+...- ..+..+.++++.....+.+++ ..+.+|||||
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---~~i~liDTPG 82 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG---HRINIIDTPG 82 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC---EEEEEEcCCC
Confidence 4568999999999999999999974210 112355666676666777654 5799999999
Q ss_pred ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
+.+|...+...++.+|++|+|+|+.+...-+...-|. .+. ..++|+||++||+|+....
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~-~~~-------~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWR-QAD-------KYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHH-HHH-------HcCCCEEEEEECCCCCCCC
Confidence 9999889999999999999999999876555443333 222 1358999999999998643
No 254
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.2e-12 Score=136.86 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=111.1
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHH-------------------------------hCCCCCccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYV-------------------------------HQFFSPHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLl-------------------------------g~~fsee~~~TigiDf~~ktV~vdg 504 (663)
...+++++||+..+|||||+.||+ .+...++..++++++.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 456899999999999999999986 1233456667777777777766554
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc---HHHHH--HHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT---FDAVL--KWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S---Fe~L~--~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
+.|.|+|+|||.+|-..+..-+.+||++|||+|+.+.+. |..-. +-+..|... .+ --.+|++.||.|
T Consensus 85 ---~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t---lG--i~~lIVavNKMD 156 (428)
T COG5256 85 ---YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART---LG--IKQLIVAVNKMD 156 (428)
T ss_pred ---ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh---cC--CceEEEEEEccc
Confidence 689999999999998888888999999999999987632 21100 111112211 11 135799999999
Q ss_pred CCC---CCCCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHH
Q psy4094 580 QPK---EGIANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDA 618 (663)
Q Consensus 580 L~d---er~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeEL 618 (663)
+.+ +|+.....++..+.+..|+ ++|++|||..|.|+.+.
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 875 2334445556666666665 46999999999998763
No 255
>KOG1145|consensus
Probab=99.27 E-value=9.8e-11 Score=130.24 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=122.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
=|-|+|+...|||||+..|-+........-+|+-.+....+.++.+ -.+.|.|||||.-|..++.+-..-+|+++||+
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVV 232 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVV 232 (683)
T ss_pred eEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEE
Confidence 4888999999999999999887776666666766777778888754 47899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH------c-CCCeEEEEeCCCC
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE------H-NFSGWFETSAKDN 612 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~------~-g~i~ffEtSAKtG 612 (663)
.+.|.-.-+.+. .|. | ....++||||+.||||.+... .....++++.. + |.+..+++||++|
T Consensus 233 AadDGVmpQT~E----aIk-h---Ak~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 233 AADDGVMPQTLE----AIK-H---AKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EccCCccHhHHH----HHH-H---HHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 999976555542 232 1 234679999999999987644 33334444332 2 2367899999999
Q ss_pred cCHHHHHHHHHHHHHhhhh
Q psy4094 613 INIDDAAKTLVQKILENDK 631 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k 631 (663)
.|++.|-+.++-++..+.-
T Consensus 302 ~nl~~L~eaill~Ae~mdL 320 (683)
T KOG1145|consen 302 ENLDLLEEAILLLAEVMDL 320 (683)
T ss_pred CChHHHHHHHHHHHHHhhc
Confidence 9999999988776655443
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.27 E-value=2.4e-11 Score=119.92 Aligned_cols=120 Identities=22% Similarity=0.327 Sum_probs=74.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHH---HHhcCcEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRV---YYKEAVGAF 536 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~---~~r~ADgaI 536 (663)
.|+|+|+.|+|||+|+.+|..+.+.+.+... .... .+.+.....-.+.++|+|||++.+..... +..++.++|
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 6999999999999999999998655443333 1111 12221111246899999999988764443 588999999
Q ss_pred EEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 537 IVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 537 LVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
||+|.+. ...+..+.+++-.+...... ....+||+|++||.|+...+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~-~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEV-QKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHC-CTT--EEEEEEE-TTSTT--
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhh-ccCCCCEEEEEeCccccccC
Confidence 9999974 44555555555444433322 24579999999999986644
No 257
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.26 E-value=3.7e-11 Score=139.50 Aligned_cols=126 Identities=20% Similarity=0.264 Sum_probs=86.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC---------------CCCC-cccc--ceeeeceeEEEecCCceeEEEEEEeCC
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ---------------FFSP-HYRA--TIGVDFALKVLSWDHETIIRLQLWDIA 516 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~---------------~fse-e~~~--TigiDf~~ktV~vdge~~vkLqIwDTp 516 (663)
.+...+|+|+|+.++|||||+++|+.. .+.. +..+ |+...+....+.+++. .+.++|||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~-~~~i~liDTP 94 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGN-EYLINLIDTP 94 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCC-ceEEEEEeCC
Confidence 345689999999999999999999742 1111 1112 3322222223334443 5789999999
Q ss_pred CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCH
Q psy4094 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNP 589 (663)
Q Consensus 517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~ 589 (663)
|+.+|......+++.+|++|+|+|+.+....+....|..... .++|+|+|+||+|..........
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~~~~~~~~ 159 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--------ENVKPVLFINKVDRLINELKLTP 159 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--------cCCCEEEEEEChhcccchhcCCH
Confidence 999999888999999999999999988655444434432222 34788999999998654333333
No 258
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.25 E-value=3e-11 Score=106.36 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=84.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccc-cceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYR-ATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~-~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
+||+++|+.|||||+|+.+|....|...+. .+++ +..+...+++.++++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------~~~~~~~~~~s~~~~~~ 52 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------IDVYDPTSYESFDVVLQ 52 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------hhhccccccCCCCEEEE
Confidence 589999999999999999998877765444 4444 22233446788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
||+.++..+++.+ |...+... ...++|+++++||.|+..+. .+..+++. .|+++|++++.|+.
T Consensus 53 v~~~~~~~s~~~~--~~~~i~~~----~k~dl~~~~~~nk~dl~~~~-~~~~~~~~---------~~~~~s~~~~~~~~ 115 (124)
T smart00010 53 CWRVDDRDSADNK--NVPEVLVG----NKSDLPILVGGNRDVLEEER-QVATEEGL---------EFAETSAKTPEEGE 115 (124)
T ss_pred EEEccCHHHHHHH--hHHHHHhc----CCCCCcEEEEeechhhHhhC-cCCHHHHH---------HHHHHhCCCcchhh
Confidence 9999999999877 88776632 23568999999999985543 33333222 35677889999884
No 259
>PRK00007 elongation factor G; Reviewed
Probab=99.24 E-value=6.3e-11 Score=137.06 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=101.3
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh--CCC----------------CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH--QFF----------------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg--~~f----------------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
+...+|+|+|+.++|||||+++|+. +.. ..+..+.++++.....+.+.+ ..++++||||
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~---~~~~liDTPG 84 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD---HRINIIDTPG 84 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC---eEEEEEeCCC
Confidence 4567999999999999999999973 110 112345566666666666654 4799999999
Q ss_pred ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK 597 (663)
Q Consensus 518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak 597 (663)
+.+|.......++.+|++|+|+|+......+...-|..... .++|+||+.||+|+.... ......++..
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--------~~~p~iv~vNK~D~~~~~---~~~~~~~i~~ 153 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--------YKVPRIAFVNKMDRTGAD---FYRVVEQIKD 153 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--------cCCCEEEEEECCCCCCCC---HHHHHHHHHH
Confidence 99988778888999999999999988766666555543222 358999999999987644 2233334434
Q ss_pred HcCC---CeEEEEeCCCC
Q psy4094 598 EHNF---SGWFETSAKDN 612 (663)
Q Consensus 598 ~~g~---i~ffEtSAKtG 612 (663)
.++. ...+++|+..+
T Consensus 154 ~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 154 RLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HhCCCeeeEEecCccCCc
Confidence 4433 33556666655
No 260
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.22 E-value=2.1e-10 Score=125.21 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=59.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCC-cc-----ccceeeeceeEEE---------------ecCCceeEEEEEEeCCC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSP-HY-----RATIGVDFALKVL---------------SWDHETIIRLQLWDIAG 517 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fse-e~-----~~TigiDf~~ktV---------------~vdge~~vkLqIwDTpG 517 (663)
++|+|||.++||||||+++|.+..+.. +| .+++|+.+....+ ..++...+.++|||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 689999999999999999999876643 22 3444443321110 12223247799999999
Q ss_pred c----cchhhhHHHH---HhcCcEEEEEEeCC
Q psy4094 518 Q----ERFGNMTRVY---YKEAVGAFIVFDVT 542 (663)
Q Consensus 518 Q----Erfrsl~~~~---~r~ADgaILVyDVT 542 (663)
. .....+...| +++||++|+|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 4455666666 88999999999997
No 261
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.1e-10 Score=132.92 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=117.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch------hhhHHHHH--h
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF------GNMTRVYY--K 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf------rsl~~~~~--r 530 (663)
.+|+++|.++||||||+|++.+....-...++++++-..-.+...+. .++|.|.||-=.. ......|+ .
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~---~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH---EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc---eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 57999999999999999999998888888999999998888888876 5899999993211 22344444 3
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
..|++|-|+|.+|-+.--.+ . -++.+ -++|+|++.|.+|....+ -..-+..++.+..|+ +.++++|+
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl--t-lQLlE-------~g~p~ilaLNm~D~A~~~--Gi~ID~~~L~~~LGv-PVv~tvA~ 147 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL--T-LQLLE-------LGIPMILALNMIDEAKKR--GIRIDIEKLSKLLGV-PVVPTVAK 147 (653)
T ss_pred CCCEEEEEcccchHHHHHHH--H-HHHHH-------cCCCeEEEeccHhhHHhc--CCcccHHHHHHHhCC-CEEEEEee
Confidence 57999999999985532222 2 22322 358999999999987654 122344567778885 89999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q psy4094 611 DNINIDDAAKTLVQKILE 628 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile 628 (663)
.|.|++++...+++....
T Consensus 148 ~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 148 RGEGLEELKRAIIELAES 165 (653)
T ss_pred cCCCHHHHHHHHHHhccc
Confidence 999999999988764433
No 262
>KOG1489|consensus
Probab=99.22 E-value=1.6e-10 Score=122.06 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=114.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHHH---Hhc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRVY---YKE 531 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~~---~r~ 531 (663)
..|.|||-+++|||||++.+...+-.....+..++.-..-++.+++. ..|.+=|+||..+ -+.+-..| +..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf--~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF--SQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc--ceeEeccCccccccccccCcccHHHHHHHHh
Confidence 47889999999999999999875544333333332222225555554 3489999999432 23344444 456
Q ss_pred CcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 532 AVGAFIVFDVTRA---ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 532 ADgaILVyDVTd~---~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
|+..+||+|++.. .-++.+..++.+|..| .....+.|.++|+||+|+.+.. ...+.+++.......+|++|
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y--ek~L~~rp~liVaNKiD~~eae----~~~l~~L~~~lq~~~V~pvs 348 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELY--EKGLADRPALIVANKIDLPEAE----KNLLSSLAKRLQNPHVVPVS 348 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHH--hhhhccCceEEEEeccCchhHH----HHHHHHHHHHcCCCcEEEee
Confidence 9999999999988 7888888888888876 3345678999999999996422 23356777777654689999
Q ss_pred CCCCcCHHHHHHHHHH
Q psy4094 609 AKDNINIDDAAKTLVQ 624 (663)
Q Consensus 609 AKtGeNVeELFe~IIr 624 (663)
|+.++|+.+++..|-+
T Consensus 349 A~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 349 AKSGEGLEELLNGLRE 364 (366)
T ss_pred eccccchHHHHHHHhh
Confidence 9999999999988754
No 263
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.21 E-value=2.4e-10 Score=101.83 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=67.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccch---------hhhHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF---------GNMTRVYY 529 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf---------rsl~~~~~ 529 (663)
+|+|+|..|+|||||++.|++.... ....+..+.......+.+++. .+.|+||||-..- .......+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~---~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK---KFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE---EEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee---eEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 6999999999999999999985432 222223332333344455553 5689999995321 11122334
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
..+|++|+|+|..+... +....++..|+ .+.|+|+|.||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence 78999999999877321 22233333332 35899999998
No 264
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.19 E-value=3e-10 Score=120.17 Aligned_cols=123 Identities=17% Similarity=0.149 Sum_probs=87.7
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT-------FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S-------Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
+.+.+||++||...+..|.+||.+++++|+|+|+++-+. ...+..-+..+...+......++|+||++||.|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 679999999999999999999999999999999997421 2344444555555555555578999999999996
Q ss_pred CCCC--------------C-CCCHHHHHHHHHH-----c----CCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 581 PKEG--------------I-ANNPAKIDEFIKE-----H----NFSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 581 ~der--------------~-~Vs~eei~qlak~-----~----g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
..+. . ....+.+..+... . ..+....++|..-.+|..+|+.+.+.|+.+.
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 3321 0 1233444443332 1 1133456889989999999999998887653
No 265
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.19 E-value=4.3e-10 Score=112.52 Aligned_cols=155 Identities=19% Similarity=0.298 Sum_probs=105.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhhHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNMTRV 527 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl~~~ 527 (663)
..-|+++|.++||||||||.+++..-..-...|.|..-....+.++++ +.+.|.|| ++.|..+...
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~----~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE----LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc----EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 357999999999999999999997644444455554455555666654 78999999 5677778888
Q ss_pred HHhc---CcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-
Q psy4094 528 YYKE---AVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF- 601 (663)
Q Consensus 528 ~~r~---ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~- 601 (663)
|+.. -.++++++|+...-.-.+ +.+|+.+ .++|++||+||+|..... .....+...+....+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~----------~~i~~~vv~tK~DKi~~~--~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE----------LGIPVIVVLTKADKLKKS--ERNKQLNKVAEELKKP 167 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH----------cCCCeEEEEEccccCChh--HHHHHHHHHHHHhcCC
Confidence 8865 357778888876544322 2233322 459999999999975532 111222333332221
Q ss_pred --Ce--EEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 602 --SG--WFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 602 --i~--ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
.. ++..|+..+.|++++...|.+.+..
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 12 7888999999999999988887654
No 266
>KOG0077|consensus
Probab=99.18 E-value=5e-11 Score=116.20 Aligned_cols=155 Identities=18% Similarity=0.179 Sum_probs=112.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
-|++++|-.++|||||++.+.++... .+.||..-.. -.+.+. .++++.+|.+||...+..|..|+..+|++++.
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTS--E~l~Ig---~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELSIG---GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCCh--HHheec---CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 49999999999999999988876543 2233322111 112222 36899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HHcCC-------------C
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI---KEHNF-------------S 602 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla---k~~g~-------------i 602 (663)
||+-|.+.|.....-++.+.. .....++|+++.+||+|.+..- ..++.+... +..+. .
T Consensus 95 vda~d~er~~es~~eld~ll~---~e~la~vp~lilgnKId~p~a~---se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ 168 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLS---DESLATVPFLILGNKIDIPYAA---SEDELRFHLGLSNFTTGKGKVNLTDSNVRPL 168 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHh---HHHHhcCcceeecccccCCCcc---cHHHHHHHHHHHHHhcccccccccCCCCCeE
Confidence 999999999888766655553 2334679999999999998754 344333322 22111 3
Q ss_pred eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 603 GWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 603 ~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
..|.||...+.+--+.|.|+.+.
T Consensus 169 evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 169 EVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEEEccCccceeeeehhhh
Confidence 47889988888888888887653
No 267
>COG2262 HflX GTPases [General function prediction only]
Probab=99.18 E-value=4.9e-10 Score=121.70 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=118.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch--hhhHHHH------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF--GNMTRVY------ 528 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf--rsl~~~~------ 528 (663)
....|.++|=.++|||||+|++.+..........-+.|-..+.+.+.++ ..+.+-||-|--+. ..+...|
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g--~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG--RKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC--ceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 3468999999999999999999976665555566667788888888864 46889999995331 2233322
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
...||++|+|+|++++...+.+......|.+ .+..++|+|+|.||+|+.... . ....+....- ..+.+|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~e----l~~~~~p~i~v~NKiD~~~~~-----~-~~~~~~~~~~-~~v~iS 337 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAE----IGADEIPIILVLNKIDLLEDE-----E-ILAELERGSP-NPVFIS 337 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHH----cCCCCCCEEEEEecccccCch-----h-hhhhhhhcCC-CeEEEE
Confidence 3569999999999999766666655555553 244569999999999976533 1 1222222221 489999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 609 AKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile~~k 631 (663)
|++|+|++.|++.|...+.....
T Consensus 338 A~~~~gl~~L~~~i~~~l~~~~~ 360 (411)
T COG2262 338 AKTGEGLDLLRERIIELLSGLRT 360 (411)
T ss_pred eccCcCHHHHHHHHHHHhhhccc
Confidence 99999999999999998875543
No 268
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.16 E-value=3e-10 Score=132.26 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=85.1
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCC----------------CCccccceeeeceeEEEec--CCceeEEEEEEeCC
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFF----------------SPHYRATIGVDFALKVLSW--DHETIIRLQLWDIA 516 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~f----------------see~~~TigiDf~~ktV~v--dge~~vkLqIwDTp 516 (663)
.+...+|+|+|+.++|||||+.+++...- ..+..+.++++.....+.+ ++. .+.+.|+|||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~-~~~i~liDtP 95 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGK-EYLINLIDTP 95 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCC-cEEEEEEcCC
Confidence 34567999999999999999999974211 1112223333333333332 333 4789999999
Q ss_pred CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
|+.+|.......++.+|++|+|+|+......+....|...+. .++|+|++.||+|+...
T Consensus 96 G~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--------~~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 96 GHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--------ERVKPVLFINKVDRLIK 154 (731)
T ss_pred CccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--------cCCCeEEEEECchhhcc
Confidence 999998888999999999999999988765555555544333 24688999999997643
No 269
>KOG0458|consensus
Probab=99.14 E-value=2.7e-10 Score=127.55 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=113.2
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHh-------------------------------CCCCCccccceeeeceeEEEec
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVH-------------------------------QFFSPHYRATIGVDFALKVLSW 502 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg-------------------------------~~fsee~~~TigiDf~~ktV~v 502 (663)
.....+.++|+|+..+|||||+.+++- +.-.++..++++++.....+.-
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 344678999999999999999999861 1123456677777777766663
Q ss_pred CCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHH-------HHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094 503 DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV-------LKWKQDLDAKVTLPDGNPIPCVLLA 575 (663)
Q Consensus 503 dge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L-------~~wieeL~~~~~~~~~~~IPIILVG 575 (663)
. ...+.|.|.|||.+|...+..-...||++|||+|++- ..|+.- ++....++ ..+ -..+||+.
T Consensus 253 ~---~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr----~Lg--i~qlivai 322 (603)
T KOG0458|consen 253 K---SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLR----SLG--ISQLIVAI 322 (603)
T ss_pred C---ceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHH----HcC--cceEEEEe
Confidence 3 3579999999999999988888899999999999985 344432 22222222 222 24579999
Q ss_pred eCCCCCC---CCCCCCHHHHHHHH-HHcCC----CeEEEEeCCCCcCHHHH
Q psy4094 576 NKCDQPK---EGIANNPAKIDEFI-KEHNF----SGWFETSAKDNINIDDA 618 (663)
Q Consensus 576 NKsDL~d---er~~Vs~eei~qla-k~~g~----i~ffEtSAKtGeNVeEL 618 (663)
||.|+.. +|++.....+..|+ +..|+ +.|++||+..|+|+-..
T Consensus 323 NKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 323 NKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 9999865 55566666777777 45554 47999999999997654
No 270
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.12 E-value=6.7e-10 Score=132.99 Aligned_cols=149 Identities=17% Similarity=0.102 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCcee---------------EEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 469 AGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI---------------IRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 469 VGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~---------------vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
++||||+..+-+........-+++..+....+.++.... -.+.|||||||+.|..++...+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 359999999988777666666666666666655542100 12899999999999998888899999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC-C--------------CHHHHH----H
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA-N--------------NPAKID----E 594 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~-V--------------s~eei~----q 594 (663)
++|+|||+++.-.-+... .+..+.. .++|+|||+||+|+...... . ..++.. .
T Consensus 552 ivlLVVDa~~Gi~~qT~e-~I~~lk~-------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIE-AINILRQ-------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHH-HHHHHHH-------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999743222221 1222221 35899999999998642200 0 001110 0
Q ss_pred H---HHHc--------------CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 595 F---IKEH--------------NFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 595 l---ak~~--------------g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
+ +..+ +.++++++||++|+||++|+.+|+..
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1 1222 33579999999999999999887654
No 271
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.11 E-value=1.7e-09 Score=115.85 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=86.9
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
+.+.+||++||..++..|..||.+++++|+|+|+++-+ ....+..-+..+...+......++|+||++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 56899999999999999999999999999999999732 12344444555555555555678999999999997
Q ss_pred CCCC--------------CCCCHHHHHHHHHH-----cC-----CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 581 PKEG--------------IANNPAKIDEFIKE-----HN-----FSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 581 ~der--------------~~Vs~eei~qlak~-----~g-----~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
..+. .....+.+..+... .. .+..+.++|..-.++..+|+.+...|+...
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 4311 01123333333322 11 134567889889999999999888887654
No 272
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.10 E-value=2.8e-09 Score=113.31 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=108.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-----hhh---hHHHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-----FGN---MTRVY 528 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-----frs---l~~~~ 528 (663)
....|+|.|.++||||||++.+.+........+..+-....-.+..++ ..+|++||||--+ ... .....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~---~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY---LRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC---ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 346899999999999999999998766544444433222222333332 5899999999421 111 11111
Q ss_pred H-hcCcEEEEEEeCCC--cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094 529 Y-KEAVGAFIVFDVTR--AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF 605 (663)
Q Consensus 529 ~-r~ADgaILVyDVTd--~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff 605 (663)
+ +-++++||+||.+. ..+.+.-..++.+++.. ...|+|+|.||+|+.+.. ..+++......-+....+
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~------f~~p~v~V~nK~D~~~~e---~~~~~~~~~~~~~~~~~~ 314 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL------FKAPIVVVINKIDIADEE---KLEEIEASVLEEGGEEPL 314 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh------cCCCeEEEEecccccchh---HHHHHHHHHHhhcccccc
Confidence 2 23688899999985 55677766777778754 338999999999987533 345555556666655678
Q ss_pred EEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 606 ETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~Ile 628 (663)
.+++..+.+++.+-+.+...+.+
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 315 KISATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred ceeeeehhhHHHHHHHHHHHhhc
Confidence 88999998988877777766443
No 273
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.08 E-value=2.6e-10 Score=116.56 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=78.6
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK 597 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak 597 (663)
++|..+.+.+++++|++|+|||++++. +|+.+..|+..+.. .++|+|||+||+||...+ .+..+.+..+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~~-~~~~~~~~~~-~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDDE-DMEKEQLDIY-R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCCH-HHHHHHHHHH-H
Confidence 678888889999999999999999987 89999999986652 469999999999997544 3333444444 3
Q ss_pred HcCCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094 598 EHNFSGWFETSAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 598 ~~g~i~ffEtSAKtGeNVeELFe~IIr 624 (663)
..++ .+|++||++|.|++++|+.+..
T Consensus 95 ~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 NIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 4664 7999999999999999998764
No 274
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.08 E-value=1.4e-09 Score=115.93 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=111.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHHH---Hh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRVY---YK 530 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~~---~r 530 (663)
..-|.|||-+++|||||++.+...+-.....+..++.-..=+|.+++. -.|.+=|+||--+ -..+-..| +.
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~--~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG--ESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC--CcEEEecCcccccccccCCCccHHHHHHHH
Confidence 346889999999999999999865443332232222222223333332 3589999999432 12333444 45
Q ss_pred cCcEEEEEEeCCCccc---HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 531 EAVGAFIVFDVTRAAT---FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 531 ~ADgaILVyDVTd~~S---Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
.|.++++|+|++..+- .+....+..+|..| .....+.|.|||+||+|+.... +........+.+..+...++++
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y--~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~~l~~~~~~~~~~~I 313 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY--SPKLAEKPRIVVLNKIDLPLDE-EELEELKKALAEALGWEVFYLI 313 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHHHHHHHHHHHh--hHHhccCceEEEEeccCCCcCH-HHHHHHHHHHHHhcCCCcceee
Confidence 6899999999996543 66777777777776 2344678999999999965533 2233334444445554434449
Q ss_pred eCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 608 SAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~Ile~~ 630 (663)
||.+++|++++...+.+.+....
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 314 SALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHhh
Confidence 99999999999999998887765
No 275
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.07 E-value=9.9e-10 Score=129.81 Aligned_cols=120 Identities=20% Similarity=0.228 Sum_probs=87.9
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCC----------------CCccccceeeeceeEEEecC-------------C
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFF----------------SPHYRATIGVDFALKVLSWD-------------H 504 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~f----------------see~~~TigiDf~~ktV~vd-------------g 504 (663)
+.+...+|+|+|+.++|||||+.+|+...- ..+..+.+++......+.+. .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 455678999999999999999999984221 12223334433333333332 1
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
...+.++|+|||||.+|.......++.+|++|+|+|+.++-..+....|...+. .++|+||+.||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--------~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--------ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--------CCCCEEEEEECCccc
Confidence 114678999999999999888999999999999999998877666655654433 458999999999986
No 276
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.05 E-value=6.8e-10 Score=118.77 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=110.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC---------------------------------CCCccccceeeeceeEEEec
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF---------------------------------FSPHYRATIGVDFALKVLSW 502 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~---------------------------------fsee~~~TigiDf~~ktV~v 502 (663)
...++++-+|...-||||||.||+.+. +..+...+|++|...+.+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 345899999999999999999997211 12355678888888887776
Q ss_pred CCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 503 DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 503 dge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+. -+|.|-|||||+.|...+..-..-||++|+++|+-.+-.-+.-+ .++..|.- -..+||+.||+||.
T Consensus 84 ~K---RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLG--------IrhvvvAVNKmDLv 152 (431)
T COG2895 84 EK---RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLG--------IRHVVVAVNKMDLV 152 (431)
T ss_pred cc---ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhC--------CcEEEEEEeeeccc
Confidence 54 47999999999999888888888899999999995432222111 22333321 14678999999998
Q ss_pred CCC---CCCCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHH
Q psy4094 582 KEG---IANNPAKIDEFIKEHNF--SGWFETSAKDNINIDD 617 (663)
Q Consensus 582 der---~~Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeE 617 (663)
+.. +..+..+-..|+..++. ..|+++||..|.||-.
T Consensus 153 dy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 153 DYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 744 33344555677777775 4699999999999753
No 277
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.03 E-value=5.4e-09 Score=101.96 Aligned_cols=162 Identities=12% Similarity=0.150 Sum_probs=97.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCcc--ccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hhHH---
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHY--RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NMTR--- 526 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~--~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl~~--- 526 (663)
++|+|+|.+|||||||+|.+++....... ....+.+.......+.+ ..+.++||||-.+.. ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~---~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG---RRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC---eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 47999999999999999999987543222 22333344444444444 478999999954321 1111
Q ss_pred -HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----CCCCHHHHHHHHHHcC
Q psy4094 527 -VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----IANNPAKIDEFIKEHN 600 (663)
Q Consensus 527 -~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----~~Vs~eei~qlak~~g 600 (663)
....+.|++|+|+++.+ .+-.. ...++.+...+.. ..-.++|+|.|+.|..... ........+.+....+
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 12356899999999986 22221 2223333332210 1114788999999854321 0011244556666655
Q ss_pred CCeEEEEe-----CCCCcCHHHHHHHHHHHHHh
Q psy4094 601 FSGWFETS-----AKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 601 ~i~ffEtS-----AKtGeNVeELFe~IIr~Ile 628 (663)
. .|+..+ +..+.++.+|++.|.+.+.+
T Consensus 154 ~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 154 G-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred C-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 3 454444 45577899999988887765
No 278
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.03 E-value=3.7e-09 Score=112.28 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=109.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch----h---hhHHHHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----G---NMTRVYY 529 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----r---sl~~~~~ 529 (663)
....|+|||.+.||||||++.+.+-.......+..+.....-.+.++| +.+||.|+||--.- + ...-...
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g---a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG---AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC---ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 346899999999999999999988655544445444455555566665 58999999984321 1 2234467
Q ss_pred hcCcEEEEEEeCCCccc-HHHHHHHHHHHH-------------------------------------hhc---CCC----
Q psy4094 530 KEAVGAFIVFDVTRAAT-FDAVLKWKQDLD-------------------------------------AKV---TLP---- 564 (663)
Q Consensus 530 r~ADgaILVyDVTd~~S-Fe~L~~wieeL~-------------------------------------~~~---~~~---- 564 (663)
++||++|+|+|+..... .+.+..-+...- ..+ ..+
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999996554 322222111110 000 000
Q ss_pred -----------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 565 -----------------DGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 565 -----------------~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
+..-+|.|+|.||+|+.. .++...+.+.. .++.+||..+.|+++|.+.|.+.+-
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 111579999999999754 34555555555 5799999999999999999988764
Q ss_pred hhh
Q psy4094 628 END 630 (663)
Q Consensus 628 e~~ 630 (663)
--+
T Consensus 290 liR 292 (365)
T COG1163 290 LIR 292 (365)
T ss_pred eEE
Confidence 433
No 279
>PTZ00416 elongation factor 2; Provisional
Probab=99.01 E-value=2.8e-09 Score=125.91 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=85.4
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCC----------------CCccccceeeeceeEEEecCC-------ceeEEEE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFF----------------SPHYRATIGVDFALKVLSWDH-------ETIIRLQ 511 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~f----------------see~~~TigiDf~~ktV~vdg-------e~~vkLq 511 (663)
.+...+|+|+|+.++|||||+++|+...- ..+..+.++++.....+.+.. .....+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 34567999999999999999999985211 122333444443333333331 1136799
Q ss_pred EEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 512 IwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
|+||||+.+|.......++.+|++|+|+|+.++-..+...-|..... .++|+|+|.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--------ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--------cCCCEEEEEEChhhh
Confidence 99999999998888899999999999999998766555444433222 358999999999986
No 280
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=3.1e-09 Score=109.09 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=73.0
Q ss_pred EEEEEeCCCccc---hhhhHHHHHhc-----CcEEEEEEeCCCcccHHHHH--HHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094 509 RLQLWDIAGQER---FGNMTRVYYKE-----AVGAFIVFDVTRAATFDAVL--KWKQDLDAKVTLPDGNPIPCVLLANKC 578 (663)
Q Consensus 509 kLqIwDTpGQEr---frsl~~~~~r~-----ADgaILVyDVTd~~SFe~L~--~wieeL~~~~~~~~~~~IPIILVGNKs 578 (663)
.+.|||++|+.+ ++..+..+++. ++++|+|+|+.......... .|+...... ..++|+|+|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-----~~~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-----RLGLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-----HcCCCEEEEEEhH
Confidence 589999999865 34555555544 88999999997654333321 222221111 1358999999999
Q ss_pred CCCCCCCCCCHHHHHH----------------------------HHHHcCC-CeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 579 DQPKEGIANNPAKIDE----------------------------FIKEHNF-SGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 579 DL~der~~Vs~eei~q----------------------------lak~~g~-i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
|+.... ..+.... .....+. ..++++||+++.|+++++++|.+.+..
T Consensus 173 D~~~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 173 DLLSEE---ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred hhcCch---hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 986543 1111111 1223332 378999999999999999999887743
No 281
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.00 E-value=6.2e-09 Score=103.45 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=65.8
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN 587 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V 587 (663)
..+.++++.|..--..... . -+|.+|+|||+++..+... .+..++. ..=++|+||+|+.+.. ..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~----------~ad~~~~~k~d~~~~~-~~ 155 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT----------RSDLLVINKIDLAPMV-GA 155 (199)
T ss_pred CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh----------hccEEEEEhhhccccc-cc
Confidence 3456777777322222221 1 2688999999997665322 1222222 1228999999997532 12
Q ss_pred CHHHHHHHHHH-cCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 588 NPAKIDEFIKE-HNFSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 588 s~eei~qlak~-~g~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
..+.+.+.++. ....++|+|||++|+|++++|++|.+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 156 DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34444444444 33468999999999999999999997664
No 282
>PRK09866 hypothetical protein; Provisional
Probab=98.98 E-value=1.1e-08 Score=116.88 Aligned_cols=109 Identities=20% Similarity=0.288 Sum_probs=75.1
Q ss_pred EEEEEeCCCccc-----hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 509 RLQLWDIAGQER-----FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 509 kLqIwDTpGQEr-----frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
.+.|+||||-.. ....+...+..+|++|||+|.+...+.... ..++.+... ....|+|+|+||+|+.+.
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~-----~K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAV-----GQSVPLYVLVNKFDQQDR 304 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhc-----CCCCCEEEEEEcccCCCc
Confidence 478999999643 233455678999999999999876554442 233444421 123699999999998543
Q ss_pred CCCCCHHHHHHHHHHc------CCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094 584 GIANNPAKIDEFIKEH------NFSGWFETSAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 584 r~~Vs~eei~qlak~~------g~i~ffEtSAKtGeNVeELFe~IIr 624 (663)
. ....+.+..+.... ....+|++||+.|.|++++++.|..
T Consensus 305 e-eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 N-SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred c-cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2 23345555554321 2346999999999999999999887
No 283
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.97 E-value=5.5e-09 Score=109.03 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=111.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEE-ecCCceeEEEEEEeCCCccc-------hhhhHHH
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL-SWDHETIIRLQLWDIAGQER-------FGNMTRV 527 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV-~vdge~~vkLqIwDTpGQEr-------frsl~~~ 527 (663)
...++|+++|..|+|||||||.++.+...+...-.+|.+...+.+ .++++ .+.|||+||-++ |+.+...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~---~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE---NLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc---ceEEecCCCcccchhhhHHHHHHHHH
Confidence 345899999999999999999999765544433333333322222 22333 589999999654 7788888
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--CCC------------CCHHHHH
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE--GIA------------NNPAKID 593 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de--r~~------------Vs~eei~ 593 (663)
++...|.++++.++.|+.---....|+..+.. ..+.++|++.|.+|...- .|. ...+.+.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~------~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~ 187 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIIL------GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE 187 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHh------ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence 99999999999999987643333444443332 234889999999996432 110 1111122
Q ss_pred HHHHHcC-CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 594 EFIKEHN-FSGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 594 qlak~~g-~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
.+.+... -.+++..++..++|++++...+++.+.....
T Consensus 188 ~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 188 ALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 2222111 2367888889999999999999998875554
No 284
>KOG0090|consensus
Probab=98.96 E-value=5.9e-09 Score=105.40 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=101.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh---cCcEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK---EAVGAF 536 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r---~ADgaI 536 (663)
.|+++|..++|||+|+.++..+.+...+... +-..-++.+... .+.++|.|||.+.+.....++. .+-++|
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~---~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSE---NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCc---ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 6999999999999999999987443332221 112223333333 3789999999999887777776 799999
Q ss_pred EEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH--------------------
Q psy4094 537 IVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-------------------- 595 (663)
Q Consensus 537 LVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql-------------------- 595 (663)
||+|..- ..-...+.+++=.+...+.. ....+|+++++||.|+.-.+ ..+.+++.
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAk---t~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAK---TAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcC---cHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9998763 23344444443333322211 34568999999999986544 11111111
Q ss_pred ------------------HHHc-CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 596 ------------------IKEH-NFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 596 ------------------ak~~-g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
.... ..+.|.++|++.+ +++++-+||.+.
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111 1145889999998 999999998764
No 285
>KOG1191|consensus
Probab=98.96 E-value=5.4e-09 Score=115.61 Aligned_cols=170 Identities=14% Similarity=0.064 Sum_probs=114.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchh---------hhHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG---------NMTRV 527 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr---------sl~~~ 527 (663)
-++|+|+|.++||||||+|.|...... ....++.+-|.....++++| +.+.+.||+|-.+-. .....
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G---~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG---VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC---eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 379999999999999999999986554 35566777777777888887 478999999964411 12344
Q ss_pred HHhcCcEEEEEEeCC--CcccHHHHHHHHHHHHhhcC--CCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--cCC
Q psy4094 528 YYKEAVGAFIVFDVT--RAATFDAVLKWKQDLDAKVT--LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE--HNF 601 (663)
Q Consensus 528 ~~r~ADgaILVyDVT--d~~SFe~L~~wieeL~~~~~--~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~--~g~ 601 (663)
.+..+|++++|+|+. +-.+-..+...++.....+. .+.....++|++.||+|+...-..+... ...+... ++-
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSV 423 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCcc
Confidence 567899999999994 33443444455554443332 1233447899999999987642111111 1111111 111
Q ss_pred -CeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 602 -SGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 602 -i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
....++|++++++++.|...+...+.....
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 235679999999999999999887765443
No 286
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.95 E-value=4.6e-09 Score=98.78 Aligned_cols=137 Identities=20% Similarity=0.275 Sum_probs=99.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----cchhhhHHHHHhcCcEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----ERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----Erfrsl~~~~~r~ADga 535 (663)
||++||..|+|||||++.+.++.. .|..|..++| .+. ..+||+|. .++..-.......+|++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~-----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK-----GDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeec-------cCc-----cccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 799999999999999999987532 3444444333 221 25788883 23322233445789999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
++|-.++++++--.. .|. .....|+|=|.+|.||.+.. ..+..++|+.+.|.-++|++|+.++.+|
T Consensus 69 ~~v~~and~~s~f~p-----~f~------~~~~k~vIgvVTK~DLaed~---dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 69 IYVHAANDPESRFPP-----GFL------DIGVKKVIGVVTKADLAEDA---DISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred eeeecccCccccCCc-----ccc------cccccceEEEEecccccchH---hHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 999999998752211 111 11235699999999998633 5678889999999889999999999999
Q ss_pred HHHHHHHHH
Q psy4094 616 DDAAKTLVQ 624 (663)
Q Consensus 616 eELFe~IIr 624 (663)
++++..+..
T Consensus 135 ~~l~~~L~~ 143 (148)
T COG4917 135 EELVDYLAS 143 (148)
T ss_pred HHHHHHHHh
Confidence 999998864
No 287
>KOG1707|consensus
Probab=98.93 E-value=9.7e-09 Score=115.32 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=127.6
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
..+..|.+.|+|..++|||.|++.|++..+...+..+....|....+.+.++ .-.+.+-|++-. ....+...- ..||
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~-~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQ-QKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccc-cceEEEeecCcc-ccccccCcc-ceee
Confidence 3456799999999999999999999999998888888888888888888876 456888888754 222222222 6799
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
+++++||.+++.+|..+...++.... ...+|+++|+.|+|+.+.......+. .+++..+++.+.+.+|.+..-
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~------~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFD------LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhh------ccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCC
Confidence 99999999999999998766554432 26799999999999987553334444 789999998778888888533
Q ss_pred CHHHHHHHHHHHHHh
Q psy4094 614 NIDDAAKTLVQKILE 628 (663)
Q Consensus 614 NVeELFe~IIr~Ile 628 (663)
. .++|..|+..+.-
T Consensus 571 s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 571 S-NELFIKLATMAQY 584 (625)
T ss_pred C-chHHHHHHHhhhC
Confidence 3 8999998886644
No 288
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.9e-09 Score=119.80 Aligned_cols=132 Identities=21% Similarity=0.276 Sum_probs=105.8
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC--------------CC----CCccccceeeeceeEEEecCCceeEEEEEEeCC
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ--------------FF----SPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~--------------~f----see~~~TigiDf~~ktV~vdge~~vkLqIwDTp 516 (663)
.....+|.|+|+.++|||||..+++-. .+ ..+..+.+++.....++.+.+ .+.++|+|||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~--~~~iNlIDTP 84 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG--DYRINLIDTP 84 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC--ceEEEEeCCC
Confidence 345679999999999999999999721 01 134556778888888888876 3689999999
Q ss_pred CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy4094 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI 596 (663)
Q Consensus 517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla 596 (663)
||.+|.....+.++-+|++|+|+|+...-..+.-..|....+ .++|.|++.||.|.....+....+++...+
T Consensus 85 GHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--------~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l 156 (697)
T COG0480 85 GHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--------YGVPRILFVNKMDRLGADFYLVVEQLKERL 156 (697)
T ss_pred CccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--------cCCCeEEEEECccccccChhhhHHHHHHHh
Confidence 999999999999999999999999999888888888877665 469999999999987655445555554443
No 289
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.88 E-value=1e-08 Score=101.46 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=41.3
Q ss_pred CcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEH-NFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 569 IPIILVGNKsDL~der~~Vs~eei~qlak~~-g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
.+.|+|+||+|+.... ........+.++.. ...+++++||++|+|++++|+++.++
T Consensus 149 ~a~iiv~NK~Dl~~~~-~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEAV-GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHccccc-hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5779999999997533 12233444444443 33589999999999999999999875
No 290
>KOG0705|consensus
Probab=98.86 E-value=5.6e-09 Score=116.34 Aligned_cols=165 Identities=19% Similarity=0.298 Sum_probs=130.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+|+.|||..++|||+|+++|+.+.|.....+.-| .| .+.+.+++. ...+.+.|.+|+.. ..|...+|++|||
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~-kkE~vv~gq-s~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RF-KKEVVVDGQ-SHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCcCc-cc-eeeEEeecc-ceEeeeecccCCch-----hhhhhhccceEEE
Confidence 7999999999999999999999999876665554 44 344445554 56789999998543 3477889999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|.+.+..+|+.+..+...+..+. ....+|+++|+++.-....+ +.+....+++++..+--+.||+++|.+|.|++.
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r---~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYR---NISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEeccccCHHHHHHHHhhccccc---ccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 99999999999998887776543 35779999999986654322 255666777777766656899999999999999
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy4094 618 AAKTLVQKILENDKVQA 634 (663)
Q Consensus 618 LFe~IIr~Ile~~k~~~ 634 (663)
.|..++..+...++.++
T Consensus 180 vf~~~~~k~i~~~~~qq 196 (749)
T KOG0705|consen 180 VFQEVAQKIVQLRKYQQ 196 (749)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999998887766544
No 291
>KOG0082|consensus
Probab=98.83 E-value=6.5e-08 Score=104.33 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=92.7
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
..+.++|++||...+.-|.++|.+++++|||+++++-+ .-.++.+-+..+..+|......+.+|||+.||.||
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 57999999999999999999999999999999998522 24456667778888888888889999999999998
Q ss_pred CCCC--------------CCCCHHHHHHHHHH----cC-----CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 581 PKEG--------------IANNPAKIDEFIKE----HN-----FSGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 581 ~der--------------~~Vs~eei~qlak~----~g-----~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
-.+. ..-..+++..+... .. -+-+..+.|..-.||..+|..+.+.|....-
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 4322 11233444433322 11 1234566788889999999999998877543
No 292
>KOG1532|consensus
Probab=98.83 E-value=1.2e-08 Score=106.56 Aligned_cols=120 Identities=15% Similarity=0.151 Sum_probs=71.7
Q ss_pred EEEEEEeCCCccc-hh-----hhHHHHHhcC--cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 508 IRLQLWDIAGQER-FG-----NMTRVYYKEA--VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 508 vkLqIwDTpGQEr-fr-----sl~~~~~r~A--DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
....|+|||||.+ |. .+....+... -++++|+|.-...+ -.-|+..+...|.......+|+|+|.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~---p~tFMSNMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS---PTTFMSNMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC---chhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence 5689999999853 32 2222333333 34445665543221 123444444455555567899999999999
Q ss_pred CCCCCCC----CCHHHHHH--------------------HHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 580 QPKEGIA----NNPAKIDE--------------------FIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 580 L~der~~----Vs~eei~q--------------------lak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
+.+..+. .+.+.-++ +-..|..+..+-||+.+|.|++++|..|-..+-++.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 9775421 11111111 111223356889999999999999999887765544
No 293
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.80 E-value=6.5e-08 Score=97.53 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=82.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+.|+|+|.+|+|||||++.+++...........| ...+...+ ...+.++||+|+. ..+ ...+..+|++|+|
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g----~i~i~~~~--~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG----PITVVTGK--KRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCccccccc----cEEEEecC--CceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 6899999999999999999986422111111111 11121122 3578999999864 222 2346889999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCC--CCCCHHHHHH-HHH-HcCCCeEEEEeCCCCc
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPKEG--IANNPAKIDE-FIK-EHNFSGWFETSAKDNI 613 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~der--~~Vs~eei~q-lak-~~g~i~ffEtSAKtGe 613 (663)
+|.+........ .++..+.. .++|. |+|.||+|+.... .....+.++. +.. .....+++.+||++..
T Consensus 111 iDa~~~~~~~~~-~i~~~l~~-------~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 111 IDASFGFEMETF-EFLNILQV-------HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EecCcCCCHHHH-HHHHHHHH-------cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 999865543332 23333331 34674 5699999986432 1111222323 222 2344689999999874
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.79 E-value=5.9e-10 Score=113.89 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=60.3
Q ss_pred EEEEEeCCCccchhhhHHHHH--------hcCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 509 RLQLWDIAGQERFGNMTRVYY--------KEAVGAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 509 kLqIwDTpGQErfrsl~~~~~--------r~ADgaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
.+.|+|||||.++-..|.... ...-++++++|...... ..-+..++..+...+ ..++|+|.|.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~----~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML----RLELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH----HHTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh----hCCCCEEEeeeccC
Confidence 689999999988765554443 34457788888874433 112222332222111 13599999999999
Q ss_pred CCCCCC---------------------CCCHHHHHHHHHHcCCC-eEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 580 QPKEGI---------------------ANNPAKIDEFIKEHNFS-GWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 580 L~der~---------------------~Vs~eei~qlak~~g~i-~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
+..... ....+.+..+...++.. .|+.+|+.+++++++++..|-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 866110 00111222233334555 899999999999999998886543
No 295
>KOG1144|consensus
Probab=98.78 E-value=2.8e-08 Score=113.63 Aligned_cols=158 Identities=20% Similarity=0.149 Sum_probs=106.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCcccc----ceeeeceeEE----------------EecCCceeEEEEEEeCCCc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRA----TIGVDFALKV----------------LSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~----TigiDf~~kt----------------V~vdge~~vkLqIwDTpGQ 518 (663)
--+||+|+..+|||-|+..+-+........- .||..|.... +.+. -|.++||+||
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP-----g~lvIdtpgh 550 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP-----GLLVIDTPGH 550 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC-----eeEEecCCCc
Confidence 3689999999999999999887544433333 3343443221 2222 3789999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------------
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-------------- 584 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-------------- 584 (663)
+.|..++.+....||.+|||+|+..+---+.+.. +..|+ ..+.|+||+.||+|.....
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lLR-------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLLR-------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccCCcchhHH-HHHHH-------hcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 9999999999999999999999997544333322 23333 2458999999999953211
Q ss_pred --CCCC------H-HHHHHHHHHcC--------------CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 585 --IANN------P-AKIDEFIKEHN--------------FSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 585 --~~Vs------~-eei~qlak~~g--------------~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
..+. . ..+.+|+. .| ++.++++||..|+||-+|+-+|++..-.++
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaE-QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAE-QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0000 0 11112222 11 134679999999999999999988654444
No 296
>PTZ00258 GTP-binding protein; Provisional
Probab=98.75 E-value=1.3e-07 Score=103.42 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=58.8
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccc-
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQER- 520 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQEr- 520 (663)
...++|+|||.++||||||++++.+........+..+++...-.+.+.+.. ...+.++|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 445799999999999999999998765544444555555444444443221 13589999999432
Q ss_pred ---hhhhHHH---HHhcCcEEEEEEeCC
Q psy4094 521 ---FGNMTRV---YYKEAVGAFIVFDVT 542 (663)
Q Consensus 521 ---frsl~~~---~~r~ADgaILVyDVT 542 (663)
-..+... .+++||++|+|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1122223 357899999999984
No 297
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.4e-08 Score=106.09 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=110.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeE--EEe------------c------CC---ceeEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALK--VLS------------W------DH---ETIIRL 510 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~k--tV~------------v------dg---e~~vkL 510 (663)
..++|.++|+...|||||...+.+ +.+.++..+.+++....- .+. . .+ +-.-++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 458999999999999999999876 445555555554322111 100 0 00 112468
Q ss_pred EEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CCCCCH
Q psy4094 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-GIANNP 589 (663)
Q Consensus 511 qIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-r~~Vs~ 589 (663)
.|.|.|||+-....+-.-..-.|++|||++.+.+.---.-.+.+-.|. ++ .-..||+|-||+||... +-...+
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Ii-----gik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-II-----GIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hh-----ccceEEEEecccceecHHHHHHHH
Confidence 899999998655444333444699999999987532222222222222 11 11467999999999752 223456
Q ss_pred HHHHHHHHHcCC--CeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 590 AKIDEFIKEHNF--SGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 590 eei~qlak~~g~--i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
+++++|.+.... .+++++||..+.||+.|++.|...|..-..
T Consensus 163 ~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 163 EQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 777777765432 589999999999999999999998865443
No 298
>KOG0461|consensus
Probab=98.72 E-value=1.9e-07 Score=100.13 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=104.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh-------CCCCCccccceeeeceeEEEecCC------ceeEEEEEEeCCCccchhhh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH-------QFFSPHYRATIGVDFALKVLSWDH------ETIIRLQLWDIAGQERFGNM 524 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg-------~~fsee~~~TigiDf~~ktV~vdg------e~~vkLqIwDTpGQErfrsl 524 (663)
.++|.|+|+..+|||||.+++.. +.......+.++.|.....+.+.- ...+.+.++|+|||...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL--- 83 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL--- 83 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH---
Confidence 38999999999999999999863 333455667777777666655532 12467899999999654
Q ss_pred HHHHHhc---CcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCC-CHHHHHHHHHH
Q psy4094 525 TRVYYKE---AVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IAN-NPAKIDEFIKE 598 (663)
Q Consensus 525 ~~~~~r~---ADgaILVyDVTd~~SFe~L~~wi-eeL~~~~~~~~~~~IPIILVGNKsDL~der-~~V-s~eei~qlak~ 598 (663)
.+..+.. .|..|+|+|+..+..-+.+.-++ -++. -...|+|.||+|+..+. +.. ..+....+.+.
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---------c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---------ccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 3444444 57889999999877666655443 2222 14568888999865432 111 22222333332
Q ss_pred c------CCCeEEEEeCCCC----cCHHHHHHHHHHHHHh
Q psy4094 599 H------NFSGWFETSAKDN----INIDDAAKTLVQKILE 628 (663)
Q Consensus 599 ~------g~i~ffEtSAKtG----eNVeELFe~IIr~Ile 628 (663)
+ |..+++++||+.| +.|.||.+.|-.+|..
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 2 3368999999999 5666666666665544
No 299
>KOG1490|consensus
Probab=98.68 E-value=1.1e-07 Score=105.60 Aligned_cols=169 Identities=16% Similarity=0.125 Sum_probs=109.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch----hhhHHH--HH--
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----GNMTRV--YY-- 529 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----rsl~~~--~~-- 529 (663)
.-.++|+|-++||||||++............+..+-.++.-.+.+ ....++++||||.-+. +....+ ..
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy---kYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY---KYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh---heeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 358999999999999999887765444333333322222222221 1467899999994321 221111 11
Q ss_pred -hcCcEEEEEEeCCC--cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcCCCeEE
Q psy4094 530 -KEAVGAFIVFDVTR--AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGWF 605 (663)
Q Consensus 530 -r~ADgaILVyDVTd--~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g~i~ff 605 (663)
+--.+++++.|++. +.|...-..++..|+-. ..+.|+|+|+||+|+..-. .....+++.+....-+.++++
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpL-----FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~ 319 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-----FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVV 319 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHH-----hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEE
Confidence 22347888999985 55666655666666643 3578999999999975432 111223444445555557899
Q ss_pred EEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094 606 ETSAKDNINIDDAAKTLVQKILENDKVQA 634 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~Ile~~k~~~ 634 (663)
++|+.+.+||-++-......++.++-.+.
T Consensus 320 ~tS~~~eegVm~Vrt~ACe~LLa~RVE~K 348 (620)
T KOG1490|consen 320 QTSCVQEEGVMDVRTTACEALLAARVEQK 348 (620)
T ss_pred EecccchhceeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888776544
No 300
>KOG3886|consensus
Probab=98.66 E-value=1.9e-08 Score=102.90 Aligned_cols=149 Identities=21% Similarity=0.262 Sum_probs=101.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-----hhHHHHHhcC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-----NMTRVYYKEA 532 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-----sl~~~~~r~A 532 (663)
-||+++|..|+|||+|-..+..+... .....+-++|+..-.+.+-|+ +.|.+||++||+.|. ......+++.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 49999999999999998766544322 345566677888888888885 679999999998553 2456678999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc---CCCeEEEEe
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH---NFSGWFETS 608 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~---g~i~ffEtS 608 (663)
+++|+|||+...+-...+..+-..|...+. +.+...|.+...|.||.... +.+..++-.+..... .++.+|.+|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999987665665555554444332 34667889999999986532 122222222222222 224677777
Q ss_pred CCC
Q psy4094 609 AKD 611 (663)
Q Consensus 609 AKt 611 (663)
...
T Consensus 161 iwD 163 (295)
T KOG3886|consen 161 IWD 163 (295)
T ss_pred hhh
Confidence 653
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.66 E-value=4.3e-07 Score=97.49 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=66.6
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IA 586 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~ 586 (663)
+.+.|+||+|...-. ......||.+|+|.+...++.++.+. ..+.. +.-|+|.||+|+.... ..
T Consensus 149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E---------~aDIiVVNKaDl~~~~~a~ 213 (332)
T PRK09435 149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIME---------LADLIVINKADGDNKTAAR 213 (332)
T ss_pred CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhhh---------hhheEEeehhcccchhHHH
Confidence 578999999975222 12466799999997644444444332 21221 2238999999986532 01
Q ss_pred CCHHHHHHHHHHc------CCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 587 NNPAKIDEFIKEH------NFSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 587 Vs~eei~qlak~~------g~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
....++...+... +..+++.+||+++.||++|++.|.+++.
T Consensus 214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1122333333321 1147999999999999999999998754
No 302
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.65 E-value=5.1e-07 Score=96.24 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=70.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhH-------HH
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMT-------RV 527 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~-------~~ 527 (663)
...++|+|+|..|||||||+|++++..... ......+.........+++ ..+.||||||..+..... ..
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G---~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG---FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC---eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 456899999999999999999999865321 1111111111112222333 579999999976542221 11
Q ss_pred HH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 528 YY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 528 ~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
|+ ...|++|||..++.......-...++.|...+.. ..-.++|||.++.|..
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~--~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK--DIWRKSLVVLTHAQFS 166 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh--hhhccEEEEEECCccC
Confidence 12 1589999997665322111112334444433211 1124689999999965
No 303
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.64 E-value=3.9e-07 Score=93.95 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=70.6
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-cccceeeeceeEEEecCCceeEEEEEEeCCCccchh--h--------h
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPH-YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--N--------M 524 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee-~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--s--------l 524 (663)
...++|+|+|..|||||||+|.+++...... .....+.........+++ ..+.||||||-.... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g---~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG---FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC---eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 3458999999999999999999998654322 111222233233333444 578999999965431 1 1
Q ss_pred HHHHHh--cCcEEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 525 TRVYYK--EAVGAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 525 ~~~~~r--~ADgaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
...|+. ..|++++|..++.. ..+.. ...++.|...+.. .--..+|||.||+|..
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~--~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGP--SIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhCh--hhHhCEEEEEeCCccC
Confidence 222333 46788888766543 22332 2333334432211 1114689999999975
No 304
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.8e-07 Score=98.77 Aligned_cols=145 Identities=16% Similarity=0.113 Sum_probs=103.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh----------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH----------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg----------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
...++|..||+.+.|||||...+.. +...++..+.++++.....+...+ -++-..|+|||.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~---rhyahVDcPGHa 86 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN---RHYAHVDCPGHA 86 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC---ceEEeccCCChH
Confidence 4568999999999999999877642 122345556676665555555444 478899999999
Q ss_pred chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCC--CCCCHHHHHHHH
Q psy4094 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQPKEG--IANNPAKIDEFI 596 (663)
Q Consensus 520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~der--~~Vs~eei~qla 596 (663)
+|-..+..-..+.|++|||++++|...-+.....+ ....-++ -||++.||+|+.++. ......+++.++
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--------larqvGvp~ivvflnK~Dmvdd~ellelVemEvreLL 158 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--------LARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--------hhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHH
Confidence 99888888888999999999999976555433222 1122345 467889999998643 223345778899
Q ss_pred HHcCC----CeEEEEeCCC
Q psy4094 597 KEHNF----SGWFETSAKD 611 (663)
Q Consensus 597 k~~g~----i~ffEtSAKt 611 (663)
..|++ .+++.-||..
T Consensus 159 s~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 159 SEYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HHcCCCCCCcceeechhhh
Confidence 99886 3567667653
No 305
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.6e-07 Score=101.53 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=116.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHh---CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVH---QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg---~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
-|+..|+-..|||||+..+.+ +...+...+++++|.........+. .+.|+|++||++|-..+-..+...|.+|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~---~~~fIDvpgh~~~i~~miag~~~~d~al 78 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG---VMGFIDVPGHPDFISNLLAGLGGIDYAL 78 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC---ceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence 578899999999999999876 3445667788888887777777654 6899999999999877777778899999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc--CCCeEEEEeCCCCcC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH--NFSGWFETSAKDNIN 614 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~--g~i~ffEtSAKtGeN 614 (663)
||++.++.-..+....++ .|. .+ + -...|+|.+|+|+.+.. ...+.+.++.... .+.++|.+|+++|.|
T Consensus 79 LvV~~deGl~~qtgEhL~-iLd-ll---g--i~~giivltk~D~~d~~--r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G 149 (447)
T COG3276 79 LVVAADEGLMAQTGEHLL-ILD-LL---G--IKNGIIVLTKADRVDEA--RIEQKIKQILADLSLANAKIFKTSAKTGRG 149 (447)
T ss_pred EEEeCccCcchhhHHHHH-HHH-hc---C--CCceEEEEeccccccHH--HHHHHHHHHHhhcccccccccccccccCCC
Confidence 999998776655544332 222 11 1 13459999999987632 1233334444333 345789999999999
Q ss_pred HHHHHHHHHHHHH
Q psy4094 615 IDDAAKTLVQKIL 627 (663)
Q Consensus 615 VeELFe~IIr~Il 627 (663)
|++|-+.|....-
T Consensus 150 I~~Lk~~l~~L~~ 162 (447)
T COG3276 150 IEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998774
No 306
>KOG0468|consensus
Probab=98.57 E-value=2.6e-07 Score=105.13 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=86.7
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-----------------cccceeeeceeEEEecC--CceeEEEEEE
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPH-----------------YRATIGVDFALKVLSWD--HETIIRLQLW 513 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee-----------------~~~TigiDf~~ktV~vd--ge~~vkLqIw 513 (663)
.......+|.|+|+-++|||+|+..++......- ..+...+.....++.+. ....+-++|+
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3456678999999999999999999986543221 11222222222333332 1225779999
Q ss_pred eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
||+||..|...+...++.+|++++|+|+.+.-++..-+-....+. .++||++|+||+|.
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--------~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--------NRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--------ccCcEEEEEehhHH
Confidence 999999999999999999999999999999888766433322332 45899999999994
No 307
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.56 E-value=2.8e-07 Score=99.76 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=83.3
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
..+.+||++||...+.-|.+++.+++++|||+++++-+ ....+.+-+..+...|......+.|+||+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 57899999999999999999999999999999987421 22445555666666666656678999999999996
Q ss_pred CCC-----C----------CC--CCHHHHHHHHHHc-----------CCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 581 PKE-----G----------IA--NNPAKIDEFIKEH-----------NFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 581 ~de-----r----------~~--Vs~eei~qlak~~-----------g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
-.+ . .. ...+.+..+.... ..+.+..|+|.+..+|..+|+.|.+.|
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 211 0 01 2334455444331 112355788888889999999887654
No 308
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.56 E-value=5.8e-07 Score=89.70 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=90.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCcc--ccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hhHH--
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHY--RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NMTR-- 526 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~--~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl~~-- 526 (663)
++|+|||..|+||||++|.+++....... ....+.........+++ ..+.|+||||-.+.. .+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g---~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG---RQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT---EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc---eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 58999999999999999999987654332 22333344455556666 478999999943211 1111
Q ss_pred -HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-C-CC----HHHHHHHHHHc
Q psy4094 527 -VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-A-NN----PAKIDEFIKEH 599 (663)
Q Consensus 527 -~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~-Vs----~eei~qlak~~ 599 (663)
....+.+++|||+.+. +-+-... ..++.|...+... .-..+|||.+..|...... . .. ....+++....
T Consensus 78 ~~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG~~--~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFGEE--IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp HHTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHCGG--GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHccHH--HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhc
Confidence 1234689999999998 3332222 2222233222111 1134788888887544331 0 00 12345566666
Q ss_pred CCCeEEEEeCC------CCcCHHHHHHHHHHHHHhhh
Q psy4094 600 NFSGWFETSAK------DNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 600 g~i~ffEtSAK------tGeNVeELFe~IIr~Ile~~ 630 (663)
+. .|+..+.+ ....+.+||+.|-+.+.+..
T Consensus 154 ~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 154 GG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 64 67777666 23457777777766655543
No 309
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.54 E-value=3.3e-07 Score=88.92 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=68.3
Q ss_pred hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH----
Q psy4094 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI---- 596 (663)
Q Consensus 521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla---- 596 (663)
|+.++..+++++|++|+|+|+++... .|...+... ..+.|+|+|+||+|+.... ...+.+..++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-----~~~~~~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-----GGNNPVILVGNKIDLLPKD--KNLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-----cCCCcEEEEEEchhcCCCC--CCHHHHHHHHHHHH
Confidence 57888999999999999999987542 233333211 2458999999999986532 3334444443
Q ss_pred -HHcCC--CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 597 -KEHNF--SGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 597 -k~~g~--i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
...+. ..+|.+||++|+|+++++++|.+.+.
T Consensus 92 ~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 92 AAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 22232 35899999999999999999988764
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.53 E-value=1.6e-06 Score=91.05 Aligned_cols=102 Identities=18% Similarity=0.107 Sum_probs=64.3
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN 587 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V 587 (663)
+.+.|+||+|.... ....+..+|.++++-+. .+-+.+..+...+. .+|.++|+||+|+....
T Consensus 127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~--- 188 (300)
T TIGR00750 127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIP---GTGDDLQGIKAGLM---------EIADIYVVNKADGEGAT--- 188 (300)
T ss_pred CCEEEEeCCCCchh---hhHHHHhhceEEEEecC---CccHHHHHHHHHHh---------hhccEEEEEcccccchh---
Confidence 67899999985321 12346678888888543 33344444444333 36779999999987533
Q ss_pred CHHHH--------HHHHHH-cCC-CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 588 NPAKI--------DEFIKE-HNF-SGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 588 s~eei--------~qlak~-~g~-i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
..... ..+... .++ .+++.|||+++.|+++++++|.+++.
T Consensus 189 ~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 189 NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 11110 111111 122 35899999999999999999988743
No 311
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.48 E-value=1.6e-06 Score=81.26 Aligned_cols=63 Identities=25% Similarity=0.269 Sum_probs=46.7
Q ss_pred EEEEEeCCCcc----chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094 509 RLQLWDIAGQE----RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578 (663)
Q Consensus 509 kLqIwDTpGQE----rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs 578 (663)
.+.|+|+||-. ....++..|+..+|++|+|.+.+....-.....|.+.+... ...+|+|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence 48999999953 33477888999999999999999876666666666655532 23389999984
No 312
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.48 E-value=6.9e-07 Score=83.81 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=66.1
Q ss_pred hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC
Q psy4094 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN 600 (663)
Q Consensus 521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g 600 (663)
|+.++.++++++|++|+|+|+.++...... .+...+. ..+.|+|+|+||+|+.... ..+....+....+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~-------~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~ 70 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL-------ELGKKLLIVLNKADLVPKE---VLEKWKSIKESEG 70 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH-------hCCCcEEEEEEhHHhCCHH---HHHHHHHHHHhCC
Confidence 567888999999999999999876533221 2222222 1358999999999985421 1111112333344
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
.+++.+||+++.|++++++.|.+.+..
T Consensus 71 -~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 71 -IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred -CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 468999999999999999999887653
No 313
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.44 E-value=2.9e-06 Score=92.21 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=56.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCc--------------eeEEEEEEeCCCccc----
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE--------------TIIRLQLWDIAGQER---- 520 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge--------------~~vkLqIwDTpGQEr---- 520 (663)
++|+|||.++||||||++++.+........+..+++...-.+.+.+. ....+.|.|+||-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999987644333344444444334443331 013589999999432
Q ss_pred hhhhHHHH---HhcCcEEEEEEeCC
Q psy4094 521 FGNMTRVY---YKEAVGAFIVFDVT 542 (663)
Q Consensus 521 frsl~~~~---~r~ADgaILVyDVT 542 (663)
-..+...+ +++||++|+|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12233333 57899999999984
No 314
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.43 E-value=7.1e-07 Score=97.26 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=83.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceee---eceeEEEecCCceeEEEEEEeCCCccchhhhHHHH-----
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGV---DFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVY----- 528 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Tigi---Df~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~----- 528 (663)
..++|+|+|++|+|||||||.|.|-.........+|+ ......+..... -++.+||.||......-...|
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~--pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF--PNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS---TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC--CCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3589999999999999999999763332222222221 111222222221 248999999964333333333
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCC--CC----CCCCC----HHHHHHHHH
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANKCDQP--KE----GIANN----PAKIDEFIK 597 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~w-ieeL~~~~~~~~~~~IPIILVGNKsDL~--de----r~~Vs----~eei~qlak 597 (663)
+...|.+|++.+ ..|....-| ...+.. -+.++.+|-+|+|.. .+ .+... .+++++-|.
T Consensus 112 ~~~yD~fiii~s----~rf~~ndv~La~~i~~-------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~ 180 (376)
T PF05049_consen 112 FYRYDFFIIISS----ERFTENDVQLAKEIQR-------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL 180 (376)
T ss_dssp GGG-SEEEEEES----SS--HHHHHHHHHHHH-------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred ccccCEEEEEeC----CCCchhhHHHHHHHHH-------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence 456898888775 334443333 344442 358999999999951 11 01122 334444443
Q ss_pred H----cCC--CeEEEEeCCC--CcCHHHHHHHHHHHHHhhhh
Q psy4094 598 E----HNF--SGWFETSAKD--NINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 598 ~----~g~--i~ffEtSAKt--GeNVeELFe~IIr~Ile~~k 631 (663)
. .|. .++|-+|+.+ .+++..|.+.+.+.+..+++
T Consensus 181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 3 232 3688899876 46788899999888877765
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.42 E-value=9.1e-07 Score=93.50 Aligned_cols=56 Identities=16% Similarity=-0.014 Sum_probs=40.4
Q ss_pred CcEEEEEeCCCCCCCCCCCCHHHHHHHH-HHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 569 IPCVLLANKCDQPKEGIANNPAKIDEFI-KEHNFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 569 IPIILVGNKsDL~der~~Vs~eei~qla-k~~g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
..-|+|.||+||.... ....+.+.+.+ ..+...++|++||++|+|++++++||..+
T Consensus 231 ~ADIVVLNKiDLl~~~-~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYL-NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCccc-HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5669999999997532 11233333333 33445689999999999999999999774
No 316
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.39 E-value=2e-06 Score=86.42 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=42.5
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 572 VLLANKCDQPKEGIANNPAKIDEFIKEH-NFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 572 ILVGNKsDL~der~~Vs~eei~qlak~~-g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
|||+||.||...- ..+.+.+.+-++.. +-.+||++|+++|+|+++++.|+...+
T Consensus 146 llVInK~DLa~~v-~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYV-GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHh-CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 7999999998755 44556555555544 446899999999999999999987754
No 317
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.36 E-value=9.7e-06 Score=89.59 Aligned_cols=155 Identities=19% Similarity=0.193 Sum_probs=95.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC----CCCC------------cccc-----ceeeec---eeEEEecCCceeEEEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ----FFSP------------HYRA-----TIGVDF---ALKVLSWDHETIIRLQL 512 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~----~fse------------e~~~-----TigiDf---~~ktV~vdge~~vkLqI 512 (663)
..+-|.|+|..++|||||+++|++. .... ...+ |..--| ....+...++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3478999999999999999999976 2221 1111 111223 33344444333577899
Q ss_pred EeCCCcc--------chhh---------------------hHHHHHh-cCcEEEEEE-eCC--C--cccH-HHHHHHHHH
Q psy4094 513 WDIAGQE--------RFGN---------------------MTRVYYK-EAVGAFIVF-DVT--R--AATF-DAVLKWKQD 556 (663)
Q Consensus 513 wDTpGQE--------rfrs---------------------l~~~~~r-~ADgaILVy-DVT--d--~~SF-e~L~~wiee 556 (663)
+||+|-. +-.. -+...+. .+++.|+|. |.+ + ++.+ +.-..|+.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999822 1111 0344555 899999998 653 1 2233 333578888
Q ss_pred HHhhcCCCCCCCCcEEEEEeCCC-CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC--cCHHHHHHHHH
Q psy4094 557 LDAKVTLPDGNPIPCVLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN--INIDDAAKTLV 623 (663)
Q Consensus 557 L~~~~~~~~~~~IPIILVGNKsD-L~der~~Vs~eei~qlak~~g~i~ffEtSAKtG--eNVeELFe~II 623 (663)
|+. .++|+|+|.||+| +..+ ..+.+..+...++ ++++.+|+... ..|..+|+.++
T Consensus 176 Lk~-------~~kPfiivlN~~dp~~~e----t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 LKE-------LNKPFIILLNSTHPYHPE----TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHh-------cCCCEEEEEECcCCCCch----hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHH
Confidence 874 4699999999999 4332 3344456666777 46777776543 34555544443
No 318
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.36 E-value=7.2e-06 Score=86.15 Aligned_cols=134 Identities=17% Similarity=0.245 Sum_probs=74.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCc----------cccceeeeceeEEEecCCceeEEEEEEeCCCccc-------
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPH----------YRATIGVDFALKVLSWDHETIIRLQLWDIAGQER------- 520 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee----------~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr------- 520 (663)
.|+|+|+|..|+|||||++.|++...... ...+..+......+.-++ ..+.|.|+||+|-..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~-~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENG-VKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETC-EEEEEEEEEEC-CSSSSTHCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCC-cceEEEEEeCCCccccccchhh
Confidence 58999999999999999999997544322 123333333333343344 478999999999321
Q ss_pred hhhh-------HHHHH-------------hcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 521 FGNM-------TRVYY-------------KEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 521 frsl-------~~~~~-------------r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
|..+ ...|+ ...|+||++++.+... .-..+ ..++.|.. .+.+|-|..|+|
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~--------~vNvIPvIaKaD 153 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK--------RVNVIPVIAKAD 153 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT--------TSEEEEEESTGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc--------cccEEeEEeccc
Confidence 1111 11111 2368999999987532 22222 45555553 378899999999
Q ss_pred CCCCC-CCCCHHHHHHHHHHcCC
Q psy4094 580 QPKEG-IANNPAKIDEFIKEHNF 601 (663)
Q Consensus 580 L~der-~~Vs~eei~qlak~~g~ 601 (663)
..... .....+.+.+-+..+++
T Consensus 154 ~lt~~el~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 154 TLTPEELQAFKQRIREDLEENNI 176 (281)
T ss_dssp GS-HHHHHHHHHHHHHHHHHTT-
T ss_pred ccCHHHHHHHHHHHHHHHHHcCc
Confidence 63311 01112334444555664
No 319
>PRK12289 GTPase RsgA; Reviewed
Probab=98.33 E-value=1.8e-06 Score=93.38 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=70.4
Q ss_pred chhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy4094 520 RFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE 598 (663)
Q Consensus 520 rfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~ 598 (663)
+-..+....+.++|++|+|+|+.++. .+..+..|+..+. ..++|+|||+||+||.... ..+.....+..
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-------~~~ip~ILVlNK~DLv~~~---~~~~~~~~~~~ 147 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE-------STGLEIVLCLNKADLVSPT---EQQQWQDRLQQ 147 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-------HCCCCEEEEEEchhcCChH---HHHHHHHHHHh
Confidence 33445566789999999999999876 5556778876654 2469999999999996422 11222333345
Q ss_pred cCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 599 HNFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 599 ~g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
.++ .+|.+||+++.|+++|++.|...+
T Consensus 148 ~g~-~v~~iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 148 WGY-QPLFISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred cCC-eEEEEEcCCCCCHHHHhhhhccce
Confidence 665 799999999999999999986543
No 320
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.29 E-value=2.4e-06 Score=92.25 Aligned_cols=96 Identities=22% Similarity=0.189 Sum_probs=72.8
Q ss_pred ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----
Q psy4094 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID---- 593 (663)
Q Consensus 518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~---- 593 (663)
+++|..+...+++.++++++|+|+.+.. ..|+..+.+++ .+.|+|||+||+||.... +..+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-----~~~piilV~NK~DLl~k~--~~~~~~~~~l~ 117 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-----GGNPVLLVGNKIDLLPKS--VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-----CCCCEEEEEEchhhCCCC--CCHHHHHHHHH
Confidence 5678889999999999999999997644 34666666543 257999999999996532 3334444
Q ss_pred HHHHHcCCC--eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 594 EFIKEHNFS--GWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 594 qlak~~g~i--~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
++++.+++. .++++||++|+|++++|..|.+.
T Consensus 118 ~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 118 KRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 446666642 58999999999999999998654
No 321
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.27 E-value=2.5e-06 Score=89.30 Aligned_cols=88 Identities=15% Similarity=0.044 Sum_probs=68.1
Q ss_pred HHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeE
Q psy4094 526 RVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~f 604 (663)
+..+.++|++|+|+|+.++. ++..+..|+..+.. .++|+|+|+||+||.... .......+....+ .++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-------~~ip~iIVlNK~DL~~~~---~~~~~~~~~~~~g-~~v 141 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-------AGIEPVIVLTKADLLDDE---EEELELVEALALG-YPV 141 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-------cCCCEEEEEEHHHCCChH---HHHHHHHHHHhCC-CeE
Confidence 44588999999999999988 88999999887763 358999999999996532 1112233334456 479
Q ss_pred EEEeCCCCcCHHHHHHHHHH
Q psy4094 605 FETSAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr 624 (663)
+.+||+++.|+++|+..|..
T Consensus 142 ~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 142 LAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEECCCCccHHHHHhhhcc
Confidence 99999999999999988764
No 322
>PRK00098 GTPase RsgA; Reviewed
Probab=98.26 E-value=1.4e-06 Score=91.66 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHhcCcEEEEEEeCCCcccHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDA-VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~-L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE 606 (663)
.+.++|++|+|+|+.++..+.. +..|+..+.. .++|+|||+||+||.... .......+++...+. ++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~~g~-~v~~ 146 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDDL--EEARELLALYRAIGY-DVLE 146 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCCH--HHHHHHHHHHHHCCC-eEEE
Confidence 4689999999999998876554 4778776652 468999999999996322 112234445555664 7999
Q ss_pred EeCCCCcCHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLV 623 (663)
Q Consensus 607 tSAKtGeNVeELFe~II 623 (663)
+||+++.|++++++.+.
T Consensus 147 vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 147 LSAKEGEGLDELKPLLA 163 (298)
T ss_pred EeCCCCccHHHHHhhcc
Confidence 99999999999998864
No 323
>KOG1486|consensus
Probab=98.26 E-value=1.5e-05 Score=83.05 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=106.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch-------hhhHHHHHhc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-------GNMTRVYYKE 531 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-------rsl~~~~~r~ 531 (663)
.+|++||-+.||||||+..+..-.-........+.....-.+.+++ ..+|+.|.||.-.- ........+.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g---a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG---ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC---ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 6999999999999999988765433323333333444455566666 47999999984321 1223345678
Q ss_pred CcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCC----------------------------------------C------
Q psy4094 532 AVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTL----------------------------------------P------ 564 (663)
Q Consensus 532 ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~----------------------------------------~------ 564 (663)
||.+++|.|.+..+.-..+ ..-++.+--.++. +
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 9999999999975443321 1111111100000 0
Q ss_pred ---------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 565 ---------------DGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 565 ---------------~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
+.--++++-|-||+| +++.+++..+|++.+. +-+|+..+.|++.+++.|-..+--.
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID------~vs~eevdrlAr~Pns---vViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKID------QVSIEEVDRLARQPNS---VVISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccc------eecHHHHHHHhcCCCc---EEEEeccccCHHHHHHHHHHHhceE
Confidence 001367788999999 5788999999988774 6788899999999999998877554
Q ss_pred hh
Q psy4094 630 DK 631 (663)
Q Consensus 630 ~k 631 (663)
+-
T Consensus 291 rv 292 (364)
T KOG1486|consen 291 RV 292 (364)
T ss_pred EE
Confidence 43
No 324
>PRK12288 GTPase RsgA; Reviewed
Probab=98.25 E-value=3e-06 Score=91.43 Aligned_cols=90 Identities=10% Similarity=0.075 Sum_probs=67.9
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
...|+|.+++||++....+|..+..|+..+. ..++|+|||+||+||...................+. ++|++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-------~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~-~v~~v 188 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACE-------TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGY-RVLMV 188 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHH-------hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCC-eEEEE
Confidence 3567999999999998889999999987554 245899999999999653200111222333445564 89999
Q ss_pred eCCCCcCHHHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~ 625 (663)
||+++.|+++|+++|...
T Consensus 189 SA~tg~GideL~~~L~~k 206 (347)
T PRK12288 189 SSHTGEGLEELEAALTGR 206 (347)
T ss_pred eCCCCcCHHHHHHHHhhC
Confidence 999999999999998754
No 325
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=8.1e-06 Score=90.08 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=83.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh--C--------------CCC------CccccceeeeceeEEEecCCceeEEEEEEeC
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH--Q--------------FFS------PHYRATIGVDFALKVLSWDHETIIRLQLWDI 515 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg--~--------------~fs------ee~~~TigiDf~~ktV~vdge~~vkLqIwDT 515 (663)
....+||-++.+|||||...++- + .+. -+..++|.+......+.+.+ +.++|.||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~---~~iNLLDT 88 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD---CLVNLLDT 88 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC---eEEeccCC
Confidence 45789999999999999999861 1 111 12234444444455555554 57999999
Q ss_pred CCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 516 pGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
|||++|..-+.+-+.-+|.+++|+|+..+-.-+.+ .+++.++ .-++|||-+.||.|...
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcr-------lR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCR-------LRDIPIFTFINKLDREG 147 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHh-------hcCCceEEEeecccccc
Confidence 99999998888888999999999999876654443 3333333 24699999999999765
No 326
>KOG0467|consensus
Probab=98.23 E-value=4.4e-06 Score=96.54 Aligned_cols=114 Identities=20% Similarity=0.213 Sum_probs=82.2
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
.....+|+|+.+...|||||+..++... ...+..++|++.. -.+..-.+ .+.++++|+|||
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmks--s~is~~~~-~~~~nlidspgh 82 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKS--SAISLLHK-DYLINLIDSPGH 82 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeec--cccccccC-ceEEEEecCCCc
Confidence 3456799999999999999999997321 1123334444333 33333222 478999999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
.+|.+......+-+|++++++|+..+---+...-+++.+. .+...|||.||+|
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--------~~~~~~lvinkid 135 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--------EGLKPILVINKID 135 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--------ccCceEEEEehhh
Confidence 9999999999999999999999998765555433332222 3467899999999
No 327
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.22 E-value=1.6e-05 Score=82.08 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=46.0
Q ss_pred EEEEEEeCCCccc-------------hhhhHHHHHhc-CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q psy4094 508 IRLQLWDIAGQER-------------FGNMTRVYYKE-AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVL 573 (663)
Q Consensus 508 vkLqIwDTpGQEr-------------frsl~~~~~r~-ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIIL 573 (663)
..|.|+|+||-.. ...+...|+++ .+++++|+|+.....-.....+...+. ..+.++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld-------~~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD-------PQGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH-------HcCCcEEE
Confidence 5799999999632 23456677884 458888998875433333333333343 24589999
Q ss_pred EEeCCCCCCC
Q psy4094 574 LANKCDQPKE 583 (663)
Q Consensus 574 VGNKsDL~de 583 (663)
|+||+|....
T Consensus 198 ViTK~D~~~~ 207 (240)
T smart00053 198 VITKLDLMDE 207 (240)
T ss_pred EEECCCCCCc
Confidence 9999998754
No 328
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.18 E-value=8.4e-06 Score=88.80 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=102.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCC--------------ccccceeeeceeEEEecCCcee---------------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSP--------------HYRATIGVDFALKVLSWDHETI--------------- 507 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse--------------e~~~TigiDf~~ktV~vdge~~--------------- 507 (663)
..+.|.+.|+.++|||||+..+..+..+. +-......+.....+-+++...
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 45899999999999999998887443321 1122233333333333333211
Q ss_pred -----EEEEEEeCCCccchhh--hHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 508 -----IRLQLWDIAGQERFGN--MTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 508 -----vkLqIwDTpGQErfrs--l~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
--+.+.|+.|||.|-. +...+=.+.|..+|++.+++.-+--.-..+--.+ .-.+|+|+|.+|+|+
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~--------a~~lPviVvvTK~D~ 267 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIAL--------AMELPVIVVVTKIDM 267 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhh--------hhcCCEEEEEEeccc
Confidence 2378999999999843 4445557799999999999876544432222111 235899999999998
Q ss_pred CCC-CCCCCHHHHHHHHHHc------------------------CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 581 PKE-GIANNPAKIDEFIKEH------------------------NFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 581 ~de-r~~Vs~eei~qlak~~------------------------g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
.++ ++.-..+++..+++.- +.+++|++|+.+|++++-|.+.+ ..+..+
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f-~~Lp~r 340 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF-LLLPKR 340 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH-HhCCcc
Confidence 653 3222333333333321 23688999999999987654443 444443
No 329
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.14 E-value=2e-05 Score=91.12 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=72.7
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-------hh---
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-------NM--- 524 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-------sl--- 524 (663)
+..++|+|||..|||||||+|.+++... ........+.........+++ ..|.|+||||-.... .+
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG---~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG---VKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC---ceEEEEECCCCCccccchHHHHHHHHH
Confidence 3457999999999999999999998653 322211111122222223344 468999999965321 11
Q ss_pred HHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 525 TRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 525 ~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
...++. .+|++|+|..++.......-..++..|...+... .-..+|||.+..|...
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~--Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS--IWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH--hHcCEEEEEeCCccCC
Confidence 122333 4799999998864333222224555555443211 1135689999999754
No 330
>KOG3887|consensus
Probab=98.14 E-value=1.4e-05 Score=82.90 Aligned_cols=165 Identities=21% Similarity=0.302 Sum_probs=99.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEE--EecCCceeEEEEEEeCCCccchh---hhHHHHHhcCcE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV--LSWDHETIIRLQLWDIAGQERFG---NMTRVYYKEAVG 534 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~kt--V~vdge~~vkLqIwDTpGQErfr---sl~~~~~r~ADg 534 (663)
+|+++|...+|||++..-.... ..+. .|...+...+. -.+.+ .-+.+++||.|||-.|- .-....++++.+
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhk-MsPn--eTlflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred eEEEEeecccCcchhhheeeec-cCCC--ceeEeeccCcccHhhhhh-hhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 5999999999999998654432 2221 12211111111 11111 24789999999997542 235677899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHH----HHHHHHcCC----CeEE
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKI----DEFIKEHNF----SGWF 605 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei----~qlak~~g~----i~ff 605 (663)
.|+|+|..+ +-.+.+..+...+... ..-.+++.+=+...|.|-.. +.....+..+ ..-+...|. +.|+
T Consensus 105 LifvIDaQd-dy~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~ 181 (347)
T KOG3887|consen 105 LIFVIDAQD-DYMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFY 181 (347)
T ss_pred EEEEEechH-HHHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEE
Confidence 999999875 2233344444333322 12246788889999999543 3222222222 222333333 3455
Q ss_pred EEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094 606 ETSAKDNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~Ile~~k~ 632 (663)
-+|. ..|.|-|.|..+++.+..+-..
T Consensus 182 LTSI-yDHSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 182 LTSI-YDHSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred Eeee-cchHHHHHHHHHHHHHhhhchh
Confidence 5554 6889999999999998877653
No 331
>KOG0099|consensus
Probab=98.11 E-value=8.9e-06 Score=85.03 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=55.9
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCc-------ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA-------ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~-------~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
+++++||++||.+-+.-|..++....++|+|+..+.- .+-.++.+-+..++.+........+-+||..||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 6799999999999999999999999999999987641 233445544455554444444456889999999997
No 332
>KOG0464|consensus
Probab=98.06 E-value=2.3e-06 Score=93.55 Aligned_cols=131 Identities=24% Similarity=0.329 Sum_probs=101.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHh--------------C----CCCCccccceeeeceeEEEecCCceeEEEEEEeCC
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVH--------------Q----FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA 516 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg--------------~----~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTp 516 (663)
.....+|.||.+-.+||||...|++- + -...+..+++++......+++.| .+++++||+
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg---~rinlidtp 110 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG---HRINLIDTP 110 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc---ceEeeecCC
Confidence 34456899999999999999998761 1 11234556677666677777776 489999999
Q ss_pred CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy4094 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI 596 (663)
Q Consensus 517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla 596 (663)
||.+|+-...++++--|+++.|||.+-+-.-+.+..|.+.- ..++|-++..||.|.....+....+.+++.+
T Consensus 111 ghvdf~leverclrvldgavav~dasagve~qtltvwrqad--------k~~ip~~~finkmdk~~anfe~avdsi~ekl 182 (753)
T KOG0464|consen 111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD--------KFKIPAHCFINKMDKLAANFENAVDSIEEKL 182 (753)
T ss_pred CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc--------ccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 99999999999999999999999999888888888886543 3569999999999987666544444444443
No 333
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.04 E-value=9.3e-06 Score=84.79 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=85.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh----------------------CCCCCccccce----eeeceeEEEecCCce-----
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH----------------------QFFSPHYRATI----GVDFALKVLSWDHET----- 506 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg----------------------~~fsee~~~Ti----giDf~~ktV~vdge~----- 506 (663)
.+.|.|-|.+|+|||||+..|.. +.+..+..+.. ....+.+.+--.+.-
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~ 108 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR 108 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence 47999999999999999999862 11111111111 011222322211100
Q ss_pred ------------eEEEEEEeCCC--ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE
Q psy4094 507 ------------IIRLQLWDIAG--QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572 (663)
Q Consensus 507 ------------~vkLqIwDTpG--QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII 572 (663)
-+.+.|+.|.| |.+. ....-||.+++|.-..-.+..+.++.=+-++- =|
T Consensus 109 ~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia------------Di 171 (266)
T PF03308_consen 109 ATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA------------DI 171 (266)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SE
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc------------cE
Confidence 04567777775 4433 24567999999998887777666553333333 28
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHcC------CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 573 LLANKCDQPKEGIANNPAKIDEFIKEHN------FSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 573 LVGNKsDL~der~~Vs~eei~qlak~~g------~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
+|.||+|+.... ....+++..+.... ..+++.|||.++.||++|++.|.++.
T Consensus 172 ~vVNKaD~~gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 172 FVVNKADRPGAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp EEEE--SHHHHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCChHHHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999999964432 12333344443321 25799999999999999999988754
No 334
>KOG0460|consensus
Probab=98.01 E-value=1.7e-05 Score=85.35 Aligned_cols=146 Identities=16% Similarity=0.096 Sum_probs=101.5
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHh----------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVH----------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg----------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
....++|.-||+...|||||.-.+.. +...++..+.|+++.....+... .-++--.|+|||
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa---~RhYaH~DCPGH 127 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETA---KRHYAHTDCPGH 127 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeecc---ccccccCCCCch
Confidence 44568999999999999999876641 22234556677666555444433 346778899999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--IANNPAKIDEFI 596 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--~~Vs~eei~qla 596 (663)
.+|--.+..-..+.|++|||+..+|...-+.-..++. -+ .+ +. ..|++..||.|+.++. .+...-++++++
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL-Ar-QV---GV--~~ivvfiNKvD~V~d~e~leLVEmE~RElL 200 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL-AR-QV---GV--KHIVVFINKVDLVDDPEMLELVEMEIRELL 200 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH-HH-Hc---CC--ceEEEEEecccccCCHHHHHHHHHHHHHHH
Confidence 9998877777788999999999999876665443331 12 11 11 3568889999997533 123345788999
Q ss_pred HHcCC----CeEEEEeCC
Q psy4094 597 KEHNF----SGWFETSAK 610 (663)
Q Consensus 597 k~~g~----i~ffEtSAK 610 (663)
..+|+ .+++.-||.
T Consensus 201 se~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 201 SEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHcCCCCCCCCeeecchh
Confidence 99886 567776654
No 335
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.94 E-value=2.1e-05 Score=82.61 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=56.2
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccc----hh
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQER----FG 522 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQEr----fr 522 (663)
|+|||.++||||||++++.+........+..+++...-.+.+.+.. ...++++|+||-.. ..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999876654444555555555555554320 13589999999432 12
Q ss_pred hhHHHH---HhcCcEEEEEEeCC
Q psy4094 523 NMTRVY---YKEAVGAFIVFDVT 542 (663)
Q Consensus 523 sl~~~~---~r~ADgaILVyDVT 542 (663)
.+...| +++||++|+|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 333333 46799999999874
No 336
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00011 Score=79.94 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=56.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC---------------ceeEEEEEEeCCCcc----
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH---------------ETIIRLQLWDIAGQE---- 519 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg---------------e~~vkLqIwDTpGQE---- 519 (663)
+++.|||-++||||||++.+..........|..+++-..-.+.+.+ .-.+.+.++|++|-.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 7899999999999999999987664434444444433332222211 012568999999843
Q ss_pred chhhhHHHH---HhcCcEEEEEEeCC
Q psy4094 520 RFGNMTRVY---YKEAVGAFIVFDVT 542 (663)
Q Consensus 520 rfrsl~~~~---~r~ADgaILVyDVT 542 (663)
.-+.+-..| +|++|+++.|+|+.
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEec
Confidence 234455555 57899999999887
No 337
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.91 E-value=7.5e-05 Score=81.09 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=74.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc----------cccceeeeceeEEEecCCceeEEEEEEeCCCccch-----
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH----------YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----- 521 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee----------~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----- 521 (663)
..|.|+++|..|.|||||++.|++.....+ ..+++.+.+..-.+.-++. .+.|+++||+|--++
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~-~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGF-HLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCe-EEEEEEeccCCccccccccc
Confidence 468999999999999999999997533211 3455555555555555554 789999999994322
Q ss_pred --h-------hhHHHHH--------------hcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 522 --G-------NMTRVYY--------------KEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 522 --r-------sl~~~~~--------------r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
. .....|+ ..+|+||+.+-.+. ..+..+. ..|..|.. .+-+|=|+-|
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~--------~vNlIPVI~K 171 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK--------RVNLIPVIAK 171 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc--------ccCeeeeeec
Confidence 1 1222333 13689998887653 2333322 34444543 3567888899
Q ss_pred CCCC
Q psy4094 578 CDQP 581 (663)
Q Consensus 578 sDL~ 581 (663)
+|..
T Consensus 172 aD~l 175 (373)
T COG5019 172 ADTL 175 (373)
T ss_pred cccC
Confidence 9963
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.89 E-value=5.3e-05 Score=71.57 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=56.7
Q ss_pred HHhcCcEEEEEEeCCCccc--HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094 528 YYKEAVGAFIVFDVTRAAT--FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF 605 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~S--Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff 605 (663)
.+.++|++|+|+|+.++.. ...+..+ +.. ...++|+|+|.||+|+.... .....+..+...+.. ..+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~-----~~~~~p~ilVlNKiDl~~~~--~~~~~~~~~~~~~~~-~~~ 73 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEY---LKK-----EKPHKHLIFVLNKCDLVPTW--VTARWVKILSKEYPT-IAF 73 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHH---HHh-----ccCCCCEEEEEEchhcCCHH--HHHHHHHHHhcCCcE-EEE
Confidence 4678999999999998642 2223233 221 12358999999999985422 111222222222222 257
Q ss_pred EEeCCCCcCHHHHHHHHHHHH
Q psy4094 606 ETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~I 626 (663)
.+||+.+.|++++++.|...+
T Consensus 74 ~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EeeccccccHHHHHHHHHHHH
Confidence 899999999999999997654
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.86 E-value=2.9e-05 Score=72.28 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=38.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
+++|+|.+|||||||+|++++..... .....|.......+.+++ .+.||||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP----TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC----CEEEEECCCc
Confidence 89999999999999999999876542 222223333344455544 3789999995
No 340
>KOG0410|consensus
Probab=97.85 E-value=3.6e-05 Score=82.54 Aligned_cols=156 Identities=18% Similarity=0.111 Sum_probs=105.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc---------chhhhHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE---------RFGNMTRVYYK 530 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE---------rfrsl~~~~~r 530 (663)
-|.|+|-.++|||||++.+.+..........-+.|...+...+..+ -.+.+.||-|-- -|+..... +.
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATLee-Va 256 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATLEE-VA 256 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHHHH-Hh
Confidence 5999999999999999999976666665656666766677777655 357889999832 23222222 45
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
.+|.+|.|.|++++..-+.....+..|..+---......-+|=|-||+|..... ..+ ..++ -+.+||+
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~---~e~------E~n~---~v~isal 324 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE---VEE------EKNL---DVGISAL 324 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc---Ccc------ccCC---ccccccc
Confidence 799999999999998766665555555532100001112357788999986643 111 1222 4679999
Q ss_pred CCcCHHHHHHHHHHHHHhhh
Q psy4094 611 DNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile~~ 630 (663)
+|+|++++...+-..+....
T Consensus 325 tgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVASET 344 (410)
T ss_pred cCccHHHHHHHHHHHhhhhh
Confidence 99999999988877665544
No 341
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.82 E-value=5.8e-05 Score=70.30 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHhcCcEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCe
Q psy4094 526 RVYYKEAVGAFIVFDVTRAATFD--AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG 603 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~SFe--~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ 603 (663)
...+.++|++|+|+|+.++.+.. .+..|+... ..+.|+|+|+||+|+.... ......+++...+ ..
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~--------~~~k~~iivlNK~DL~~~~---~~~~~~~~~~~~~-~~ 73 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV--------DPRKKNILLLNKADLLTEE---QRKAWAEYFKKEG-IV 73 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc--------cCCCcEEEEEechhcCCHH---HHHHHHHHHHhcC-Ce
Confidence 34578899999999999876644 344444322 1358999999999985422 1233445555556 47
Q ss_pred EEEEeCCCCcC
Q psy4094 604 WFETSAKDNIN 614 (663)
Q Consensus 604 ffEtSAKtGeN 614 (663)
++++||.++.+
T Consensus 74 ii~iSa~~~~~ 84 (141)
T cd01857 74 VVFFSALKENA 84 (141)
T ss_pred EEEEEecCCCc
Confidence 99999998864
No 342
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.73 E-value=0.00014 Score=68.77 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=55.2
Q ss_pred cEEEEEEeCCCcccHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQ-DLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wie-eL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
|++|+|+|+.++.+... .|+. ... ...++|+|+|+||+|+.... ...+.+..+....+ ..++.+||++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~------~~~~~p~IiVlNK~Dl~~~~--~~~~~~~~~~~~~~-~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLI------KEKGKKLILVLNKADLVPKE--VLRKWLAYLRHSYP-TIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHH------hcCCCCEEEEEechhcCCHH--HHHHHHHHHHhhCC-ceEEEEeccC
Confidence 78999999998765543 2333 111 12458999999999985421 01111122222223 4689999999
Q ss_pred CcCHHHHHHHHHHHHH
Q psy4094 612 NINIDDAAKTLVQKIL 627 (663)
Q Consensus 612 GeNVeELFe~IIr~Il 627 (663)
|.|++++++.|.+.+.
T Consensus 70 ~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 70 GQGIEKKESAFTKQTN 85 (155)
T ss_pred CcChhhHHHHHHHHhH
Confidence 9999999999987653
No 343
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00026 Score=75.43 Aligned_cols=107 Identities=12% Similarity=0.053 Sum_probs=66.2
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC-
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA- 586 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~- 586 (663)
+.+.|+.|.|--.-. -.....||.+++|.=..-.+..+.++.=+-+|-. |+|.||.|.......
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD------------i~vINKaD~~~A~~a~ 208 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD------------IIVINKADRKGAEKAA 208 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh------------eeeEeccChhhHHHHH
Confidence 457788887632111 1245569999988877667777776544434432 799999996543200
Q ss_pred CCHHHHHHHHH----Hc-CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 587 NNPAKIDEFIK----EH-NFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 587 Vs~eei~qlak----~~-g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
-....+.++.. .. +..+++.|||..|+|+++|++.|.++.--.
T Consensus 209 r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 209 RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 00111111111 11 225789999999999999999998876433
No 344
>KOG1547|consensus
Probab=97.70 E-value=0.00036 Score=72.60 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=84.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC---------CccccceeeeceeEEEecCCceeEEEEEEeCCCccch------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS---------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF------ 521 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs---------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf------ 521 (663)
..|+|+|||.+|.|||||++.+...... .-+..|+.+.....++.-++- ..+|.++||+|--++
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gV-klkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGV-KLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecce-EEEEEEecCCCcccccCccch
Confidence 3689999999999999999998743221 133445555555555555554 688999999993221
Q ss_pred -h-------hhHHHHHh--------------cCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094 522 -G-------NMTRVYYK--------------EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578 (663)
Q Consensus 522 -r-------sl~~~~~r--------------~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKs 578 (663)
. .....|++ .+++|++.+-.+ +.++.-+. .+++.|... +-||-|+-|+
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~v--------vNvvPVIaka 194 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTEV--------VNVVPVIAKA 194 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhhh--------heeeeeEeec
Confidence 1 12222332 367888877666 34444432 334444432 4567788899
Q ss_pred CCC--CCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 579 DQP--KEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 579 DL~--der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
|-. ++| ..-.+.+++-+..+++ .+|+--+
T Consensus 195 DtlTleEr-~~FkqrI~~el~~~~i-~vYPq~~ 225 (336)
T KOG1547|consen 195 DTLTLEER-SAFKQRIRKELEKHGI-DVYPQDS 225 (336)
T ss_pred ccccHHHH-HHHHHHHHHHHHhcCc-ccccccc
Confidence 943 222 3345566666777775 5554433
No 345
>KOG2655|consensus
Probab=97.70 E-value=0.00047 Score=75.21 Aligned_cols=115 Identities=16% Similarity=0.254 Sum_probs=72.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCC---------ccccceeeeceeEEEecCCceeEEEEEEeCCCccc-------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSP---------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER------- 520 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse---------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr------- 520 (663)
..|.++++|++|.|||||||.|+...+.. ....++.+......+.-+|- .++|+++||||--+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~-~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGV-KLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCe-EEeeEEeccCCCccccccccc
Confidence 35899999999999999999988654332 22234454544444444444 79999999999332
Q ss_pred hh-------hhHHHHHh-------------cCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 521 FG-------NMTRVYYK-------------EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 521 fr-------sl~~~~~r-------------~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
|+ .....|+. .+|+||+.+..+.. .+..+. ..+..|. ..+.+|-|+-|.|
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~--------~~vNiIPVI~KaD 169 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS--------KKVNLIPVIAKAD 169 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh--------ccccccceeeccc
Confidence 21 12233331 47899998876632 222221 3334443 3367788888999
Q ss_pred CC
Q psy4094 580 QP 581 (663)
Q Consensus 580 L~ 581 (663)
..
T Consensus 170 ~l 171 (366)
T KOG2655|consen 170 TL 171 (366)
T ss_pred cC
Confidence 63
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.69 E-value=0.00012 Score=70.41 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=64.8
Q ss_pred CCc-cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q psy4094 516 AGQ-ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE 594 (663)
Q Consensus 516 pGQ-Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q 594 (663)
+|| .+........+.+||++|+|+|+.++...... .++..+ .+.|+|+|.||+|+.... ......+
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~---------~~k~~ilVlNK~Dl~~~~---~~~~~~~ 69 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL---------GNKPRIIVLNKADLADPK---KTKKWLK 69 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh---------cCCCEEEEEehhhcCChH---HHHHHHH
Confidence 444 35556667788999999999999876543221 122211 237899999999985421 1111212
Q ss_pred HHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 595 FIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 595 lak~~g~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
+....+ ..++.+||+++.|++++...+...+.
T Consensus 70 ~~~~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 70 YFESKG-EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHHhcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 223333 36899999999999999999988764
No 347
>KOG0085|consensus
Probab=97.67 E-value=6.7e-05 Score=77.57 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=84.1
Q ss_pred eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-------cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-------TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-------SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
.+.+.+.|++||..-+.-|.+++.++-.+|+++.++.-+ .-.++.+-...++.++......+.++|+..||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 366889999999999999999999998888877665311 1223334444555556677788999999999999
Q ss_pred CCCCCC---------------CCCHHHHHHHHH----HcCC-----CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 580 QPKEGI---------------ANNPAKIDEFIK----EHNF-----SGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 580 L~der~---------------~Vs~eei~qlak----~~g~-----i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
|.++.. ..+.+.+++|.- ..+- +.-..+.|..-+||.-+|..+-..|+...
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 865431 112233333332 2221 11235668888999999999988887653
No 348
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.67 E-value=0.00011 Score=69.07 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=38.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
..+|+++|.+++|||||+++|.+... ..+.++.|.......+..++ .+.||||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~----~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS----KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC----CEEEEECcC
Confidence 36899999999999999999996542 33444555443333333333 489999998
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.65 E-value=0.00012 Score=70.44 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=38.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
..++|+++|.+|||||||++++.+..+. ....+..+ +....+.++. .+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~~----~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKISP----GIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEecC----CEEEEECCCC
Confidence 3479999999999999999999987663 22223333 3333344432 4789999984
No 350
>KOG1954|consensus
Probab=97.61 E-value=0.00059 Score=74.53 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccc-cceeeeceeEEEecC------Cce--------------------------
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYR-ATIGVDFALKVLSWD------HET-------------------------- 506 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~-~TigiDf~~ktV~vd------ge~-------------------------- 506 (663)
-|+++|.=..||||||+.++.+.|..... +..+.++....+.-+ |+.
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~cs 139 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCS 139 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHh
Confidence 69999999999999999999888763221 222223333332211 110
Q ss_pred ------eEEEEEEeCCCcc-----------chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC
Q psy4094 507 ------IIRLQLWDIAGQE-----------RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI 569 (663)
Q Consensus 507 ------~vkLqIwDTpGQE-----------rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I 569 (663)
--.+.|+||||.- .|.....-|...||.+||+||.-.-+--+.....+..|+- ..-
T Consensus 140 qmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-------~Ed 212 (532)
T KOG1954|consen 140 QLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-------HED 212 (532)
T ss_pred cCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-------Ccc
Confidence 0248999999932 2445667788999999999998765544455555666663 233
Q ss_pred cEEEEEeCCCCCC
Q psy4094 570 PCVLLANKCDQPK 582 (663)
Q Consensus 570 PIILVGNKsDL~d 582 (663)
.|-||.||.|..+
T Consensus 213 kiRVVLNKADqVd 225 (532)
T KOG1954|consen 213 KIRVVLNKADQVD 225 (532)
T ss_pred eeEEEeccccccC
Confidence 4678999999644
No 351
>KOG1143|consensus
Probab=97.58 E-value=0.00021 Score=77.87 Aligned_cols=155 Identities=15% Similarity=0.209 Sum_probs=95.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-----------------------ccccceeeeceeEEEecCCce-------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-----------------------HYRATIGVDFALKVLSWDHET------- 506 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-----------------------e~~~TigiDf~~ktV~vdge~------- 506 (663)
-.++|+|+|...+|||||+.-+..+..+. -....+|.|..-+.+.+....
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 35799999999999999998775433221 112234555544555443320
Q ss_pred --eEEEEEEeCCCccchhhhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 507 --IIRLQLWDIAGQERFGNMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 507 --~vkLqIwDTpGQErfrsl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
.--+.++|.+||.+|.....+-+. ..|.++||+++........- +.+-.+. .-++|++++.+|+||.+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~-------AL~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIA-------ALNIPFFVLVTKMDLVD 317 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHH-------HhCCCeEEEEEeecccc
Confidence 124789999999999765544443 36889999998876554432 2222232 23599999999999965
Q ss_pred CC-CCCCHHHHHHHHHHc-------------------------CCCeEEEEeCCCCcCHHHHH
Q psy4094 583 EG-IANNPAKIDEFIKEH-------------------------NFSGWFETSAKDNINIDDAA 619 (663)
Q Consensus 583 er-~~Vs~eei~qlak~~-------------------------g~i~ffEtSAKtGeNVeELF 619 (663)
.. ..-..++...+.... ++.++|-+|...|++++-+-
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 31 001111122222222 33678999999999876543
No 352
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.56 E-value=0.00033 Score=72.91 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=66.2
Q ss_pred CCCcc-chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH
Q psy4094 515 IAGQE-RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID 593 (663)
Q Consensus 515 TpGQE-rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ 593 (663)
.|||- +........+..+|++|+|+|+.++.+... .++..+. .+.|+|+|.||+|+.+.. ......
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l--------~~kp~IiVlNK~DL~~~~---~~~~~~ 70 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR--------GNKPRLIVLNKADLADPA---VTKQWL 70 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH--------CCCCEEEEEEccccCCHH---HHHHHH
Confidence 35553 344555667889999999999987654332 1222211 147999999999985421 111222
Q ss_pred HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 594 EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 594 qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
++....+ ..++.+||+++.|++++++.|.+.+...
T Consensus 71 ~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 71 KYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 2233344 3689999999999999999988877543
No 353
>PRK13796 GTPase YqeH; Provisional
Probab=97.55 E-value=0.00041 Score=75.38 Aligned_cols=93 Identities=19% Similarity=0.192 Sum_probs=63.1
Q ss_pred chhhhHHHHHhcCc-EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----H
Q psy4094 520 RFGNMTRVYYKEAV-GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID----E 594 (663)
Q Consensus 520 rfrsl~~~~~r~AD-gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~----q 594 (663)
.|..+.... ..++ .+++|+|+.|.. ..|+..|..+. .+.|+|||+||+||... .+..+.+. .
T Consensus 58 ~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-----~~kpviLViNK~DLl~~--~~~~~~i~~~l~~ 124 (365)
T PRK13796 58 DFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-----GNNPVLLVGNKADLLPK--SVKKNKVKNWLRQ 124 (365)
T ss_pred HHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-----CCCCEEEEEEchhhCCC--ccCHHHHHHHHHH
Confidence 455544443 4455 888999998743 34566666542 25799999999999652 23333333 3
Q ss_pred HHHHcCCC--eEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 595 FIKEHNFS--GWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 595 lak~~g~i--~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
+++.+++. .++.+||+++.|++++++.|.+.
T Consensus 125 ~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45555642 58999999999999999999764
No 354
>KOG0466|consensus
Probab=97.52 E-value=4.6e-05 Score=81.19 Aligned_cols=167 Identities=20% Similarity=0.209 Sum_probs=104.3
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC---CCCCccccceeeec--ee-EEEecCC------------------------
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGVDF--AL-KVLSWDH------------------------ 504 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~---~fsee~~~TigiDf--~~-ktV~vdg------------------------ 504 (663)
++..++|.-||+...||||++..+.+- .|..+..+.+++.. .. +.+..++
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 345689999999999999999888652 23333344433322 11 1111111
Q ss_pred --ce-----eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC----cccHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q psy4094 505 --ET-----IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR----AATFDAVLKWKQDLDAKVTLPDGNPIPCVL 573 (663)
Q Consensus 505 --e~-----~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd----~~SFe~L~~wieeL~~~~~~~~~~~IPIIL 573 (663)
.. .-++.+.|++||+.....+-.-..-.|+++|++..+. +.+-+.+.. -++.+ -..||+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~--------Lkhiii 184 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK--------LKHIII 184 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh--------hceEEE
Confidence 00 1357899999998654443333344688888887664 233333321 12221 156899
Q ss_pred EEeCCCCCCCCC-CCCHHHHHHHHHHcCC--CeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 574 LANKCDQPKEGI-ANNPAKIDEFIKEHNF--SGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 574 VGNKsDL~der~-~Vs~eei~qlak~~g~--i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
+-||+||..+.. ....++++.|...... .+++++||..+.||+-+.++|+..|..-.+
T Consensus 185 lQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 185 LQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred EechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 999999976441 1234556666655432 589999999999999999999998865433
No 355
>KOG0465|consensus
Probab=97.50 E-value=0.00013 Score=83.24 Aligned_cols=117 Identities=20% Similarity=0.302 Sum_probs=92.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh------------------CCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH------------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg------------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
...+|.++.+-.+|||||-.+.+- +....+..+.+++......+.+.+ ++++|+|||||
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~---~~iNiIDTPGH 114 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRD---YRINIIDTPGH 114 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeecc---ceeEEecCCCc
Confidence 456899999999999999998761 111234455666666666666663 68999999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
.+|.-...+.++--|++|+|+|...+-.-+....|.+.-+ .++|-|...||.|.....
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--------y~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--------YNVPRICFINKMDRMGAS 172 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--------cCCCeEEEEehhhhcCCC
Confidence 9999999999999999999999998877778788876544 469999999999975543
No 356
>KOG2486|consensus
Probab=97.49 E-value=0.00016 Score=76.32 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=91.0
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCcccc-ceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhh
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRA-TIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGN 523 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~-TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrs 523 (663)
.+....++++|..+||||+|++.++.......... ..|..-....+.+. -.+.+.|.+| ..+|..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~----~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG----KSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc----ceEEEEecCCcccccCCccCcchHhH
Confidence 45667999999999999999999986443322222 22211111222222 2588999998 235666
Q ss_pred hHHHHHhcCc---EEEEEEeCCCccc-HHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC------CCCHHH-
Q psy4094 524 MTRVYYKEAV---GAFIVFDVTRAAT-FDA-VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI------ANNPAK- 591 (663)
Q Consensus 524 l~~~~~r~AD---gaILVyDVTd~~S-Fe~-L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~------~Vs~ee- 591 (663)
+...|+.+-+ -+++++|++-+-- .+. ...|+. ..++|+.+|.||||...... ......
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g----------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~ 278 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG----------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKIN 278 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh----------hcCCCeEEeeehhhhhhhccccccCccccceee
Confidence 7777775544 3445556553221 111 123332 35699999999999643220 011110
Q ss_pred HHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 592 IDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 592 i~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
...+.... ...+++.+|+.++.|+++|+-.|.+.
T Consensus 279 f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 279 FQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred hhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 11111110 11468899999999999998877664
No 357
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.47 E-value=0.00061 Score=84.04 Aligned_cols=113 Identities=23% Similarity=0.240 Sum_probs=69.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCc------cccceeeeceeEEEecCCceeEEEEEEeCCC----cc----chhhhH
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPH------YRATIGVDFALKVLSWDHETIIRLQLWDIAG----QE----RFGNMT 525 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee------~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----QE----rfrsl~ 525 (663)
=.+|||++|+|||||+.+. +-.|.-. ...+++-.. .....+.++ ..++||+| |+ .....|
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~----avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDE----AVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCC----EEEEcCCCccccCCCcccccHHHH
Confidence 3789999999999999876 4334321 111222111 122222332 56999999 22 233445
Q ss_pred HHHH---------hcCcEEEEEEeCCCccc---------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 526 RVYY---------KEAVGAFIVFDVTRAAT---------FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 526 ~~~~---------r~ADgaILVyDVTd~~S---------Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
..++ +-.||+|+|+|+.+--. -..++..+.++...+ +-.+||-||.+|+|+..
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l----g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL----GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh----CCCCCEEEEEecchhhc
Confidence 5554 23799999999986321 123445556666543 34699999999999864
No 358
>KOG0459|consensus
Probab=97.41 E-value=9.1e-05 Score=81.32 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=99.4
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC-------------------------------CCCCccccceeeeceeEEEecC
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ-------------------------------FFSPHYRATIGVDFALKVLSWD 503 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~-------------------------------~fsee~~~TigiDf~~ktV~vd 503 (663)
+...++++++|+..+||||+-.+++.. ...++....-+++...-.+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 355689999999999999998776521 0111112111222222222222
Q ss_pred CceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 504 HETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA---TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 504 ge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~---SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
.-++.|.|.+||..|...+..-..+||..+||+++...+ -|++-.+-.+....+. ...-..+|++.||.|-
T Consensus 156 ---~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak---t~gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 156 ---NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKHLIVLINKMDD 229 (501)
T ss_pred ---ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH---hhccceEEEEEEeccC
Confidence 247999999999999888777788899999999885322 2443322222211110 0112467999999997
Q ss_pred CCCC-----CCCCHHHHHHHHHHcCC-----CeEEEEeCCCCcCHHHHHH
Q psy4094 581 PKEG-----IANNPAKIDEFIKEHNF-----SGWFETSAKDNINIDDAAK 620 (663)
Q Consensus 581 ~der-----~~Vs~eei~qlak~~g~-----i~ffEtSAKtGeNVeELFe 620 (663)
+... +....+.+..|++..|+ ..|++||..+|.|+.+...
T Consensus 230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 6433 22334455566665554 4599999999999988654
No 359
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.38 E-value=0.0012 Score=70.91 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=56.7
Q ss_pred EEEEEEeCCCccchh----hhHHHHH--------hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVYY--------KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~~--------r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG 575 (663)
+.+.|+||+|..... .....+. ...+..+||.|++.. .+.+.. ...+...+ -+.-+|.
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~~-------~~~giIl 266 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEAV-------GLTGIIL 266 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhhC-------CCCEEEE
Confidence 679999999964321 1122222 246788999999853 233332 23332211 2346899
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHH
Q psy4094 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620 (663)
Q Consensus 576 NKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe 620 (663)
||.|.... .-.+..++..++. ++.+++ +|++++++-.
T Consensus 267 TKlD~t~~-----~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 267 TKLDGTAK-----GGVVFAIADELGI-PIKFIG--VGEGIDDLQP 303 (318)
T ss_pred ECCCCCCC-----ccHHHHHHHHHCC-CEEEEe--CCCChhhCcc
Confidence 99995432 2345556666774 788887 7888877643
No 360
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.38 E-value=0.00044 Score=65.34 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=36.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
.+.|+++|.+|||||||+|++.+.... ....+..+... ..+..+. .+.++||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~----~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVW--QYITLMK----RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeE--EEEEcCC----CEEEEECcC
Confidence 368999999999999999999985442 22233333222 2233333 267999998
No 361
>KOG0463|consensus
Probab=97.37 E-value=0.00033 Score=76.45 Aligned_cols=164 Identities=14% Similarity=0.195 Sum_probs=90.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC------------------Cccccceeeece-----eEEEecC----------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS------------------PHYRATIGVDFA-----LKVLSWD---------- 503 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs------------------ee~~~TigiDf~-----~ktV~vd---------- 503 (663)
..++|+|+|...+|||||+.-+..+..+ .-....+|.|+. -..+.-.
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 3479999999999999999665422211 112222332221 1111110
Q ss_pred ---CceeEEEEEEeCCCccchhhhH--HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094 504 ---HETIIRLQLWDIAGQERFGNMT--RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578 (663)
Q Consensus 504 ---ge~~vkLqIwDTpGQErfrsl~--~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs 578 (663)
....-.+.++|.+||++|-... .+--+..|..+|++-.+-.. .-...+.+. ..-.-.+|+.||.+|+
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLg-------LALaL~VPVfvVVTKI 283 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLG-------LALALHVPVFVVVTKI 283 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhh-------hhhhhcCcEEEEEEee
Confidence 0111347899999999984322 22224468888888665321 111111111 1112348999999999
Q ss_pred CCCCCCCCCCHHHHH---HHHHHcCC-------------------------CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 579 DQPKEGIANNPAKID---EFIKEHNF-------------------------SGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 579 DL~der~~Vs~eei~---qlak~~g~-------------------------i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
|+.... +.++.++ .+.+..|| |++|.+|-.+|.|+.-| ...+..+..++
T Consensus 284 DMCPAN--iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL-kmFLNlls~R~ 360 (641)
T KOG0463|consen 284 DMCPAN--ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL-KMFLNLLSLRR 360 (641)
T ss_pred ccCcHH--HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH-HHHHhhcCccc
Confidence 987754 2333222 23333222 57899999999998654 34444444444
Q ss_pred h
Q psy4094 631 K 631 (663)
Q Consensus 631 k 631 (663)
+
T Consensus 361 ~ 361 (641)
T KOG0463|consen 361 Q 361 (641)
T ss_pred c
Confidence 3
No 362
>KOG1487|consensus
Probab=97.36 E-value=0.00054 Score=72.01 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=95.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccch-------hhhHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-------GNMTRVYYK 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-------rsl~~~~~r 530 (663)
.+|.++|-+.||||||+..+.+..-.. .|.-+ +.....-.+.+.+ .++++.|.||.-+- ........+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyeft-tl~~vpG~~~y~g---aKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFT-TLTTVPGVIRYKG---AKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccce-eEEEecceEeccc---cceeeecCcchhcccccCCCCccEEEEEee
Confidence 489999999999999999887643221 12111 1111111222333 47999999984321 122333467
Q ss_pred cCcEEEEEEeCCCcccHHHHHHH-----------------------------------------HHHHHhhc--------
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKW-----------------------------------------KQDLDAKV-------- 561 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~w-----------------------------------------ieeL~~~~-------- 561 (663)
.|+.+++|.|+..+-+...+.+. +.+.+.+-
T Consensus 136 tcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~D 215 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFD 215 (358)
T ss_pred cccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecC
Confidence 89999999999877665443211 01111000
Q ss_pred -------CCCC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094 562 -------TLPD--GNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 562 -------~~~~--~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~ 632 (663)
.... ..-+|.|.+.||+|-. ..++.. -.+-....+.+||..++|++++++.+-..+.-.+..
T Consensus 216 aT~DdLIdvVegnr~yVp~iyvLNkIdsI------SiEELd---ii~~iphavpISA~~~wn~d~lL~~mweyL~LvriY 286 (358)
T KOG1487|consen 216 ATADDLIDVVEGNRIYVPCIYVLNKIDSI------SIEELD---IIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIY 286 (358)
T ss_pred cchhhhhhhhccCceeeeeeeeeccccee------eeeccc---eeeeccceeecccccccchHHHHHHHhhcchheEEe
Confidence 0000 0147888999999842 222211 123334578999999999999999888766555544
Q ss_pred hh
Q psy4094 633 QA 634 (663)
Q Consensus 633 ~~ 634 (663)
++
T Consensus 287 tk 288 (358)
T KOG1487|consen 287 TK 288 (358)
T ss_pred cC
Confidence 43
No 363
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.34 E-value=0.00076 Score=70.71 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=66.6
Q ss_pred CCCcc-chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH
Q psy4094 515 IAGQE-RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID 593 (663)
Q Consensus 515 TpGQE-rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ 593 (663)
.|||- +-.......+..||++|+|+|+.++.+.+. .++..+. .+.|+|+|.||+||.+.. ..+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~--------~~kp~iiVlNK~DL~~~~---~~~~~~ 73 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII--------GNKPRLLILNKSDLADPE---VTKKWI 73 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh--------CCCCEEEEEEchhcCCHH---HHHHHH
Confidence 45653 333445667889999999999987654332 1222222 147999999999985421 112222
Q ss_pred HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 594 EFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 594 qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
.+....+ ..++.+||+++.|++++++.|...+...
T Consensus 74 ~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 74 EYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 2333334 3689999999999999999988876544
No 364
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.34 E-value=0.0007 Score=70.53 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=39.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
.++|+|+|.+|||||||+|++.+.... ....++.+ .....+.+.. .+.||||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~~----~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVT--KGQQWIKLSD----GLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCee--cceEEEEeCC----CEEEEECCCc
Confidence 489999999999999999999976543 22233333 3334444443 3789999997
No 365
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.33 E-value=0.00045 Score=67.64 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=38.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
..++|+|+|.++||||||+|++.+... .....++++..+ ..+.++. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~----~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK----KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC----CEEEEECcC
Confidence 347999999999999999999998554 333444444333 3333333 378999998
No 366
>PRK14974 cell division protein FtsY; Provisional
Probab=97.32 E-value=0.00082 Score=72.70 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=56.9
Q ss_pred EEEEEEeCCCccchh----hhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+||+|..... .....+. .+.|.++||.|++... ........+...+ -.--+|.||.|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~-------~~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV-------GIDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC-------CCCEEEEeeecCC
Confidence 468999999965321 1122222 3578999999997643 2222223332211 1236889999985
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT 621 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~ 621 (663)
... -.+..++...+. ++.+++ +|++++++...
T Consensus 293 ~~~-----G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 293 AKG-----GAALSIAYVIGK-PILFLG--VGQGYDDLIPF 324 (336)
T ss_pred CCc-----cHHHHHHHHHCc-CEEEEe--CCCChhhcccC
Confidence 532 234445555664 777776 78889887644
No 367
>KOG0469|consensus
Probab=97.31 E-value=0.00049 Score=77.29 Aligned_cols=134 Identities=18% Similarity=0.247 Sum_probs=90.2
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHh------------CCCC----CccccceeeeceeEEEec--------------CC
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVH------------QFFS----PHYRATIGVDFALKVLSW--------------DH 504 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg------------~~fs----ee~~~TigiDf~~ktV~v--------------dg 504 (663)
.....++-||.+...|||||...++. ..|. .+..+.+++......+.+ ++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 34556899999999999999999872 1121 122333443322222211 12
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
+ ...++++|.|||.+|.+.....++-.|++++|+|..++--.+.-..+.+.+.+ ++.-+||.||.|..--.
T Consensus 96 ~-~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E--------RIkPvlv~NK~DRAlLE 166 (842)
T KOG0469|consen 96 N-GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--------RIKPVLVMNKMDRALLE 166 (842)
T ss_pred c-ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh--------hccceEEeehhhHHHHh
Confidence 2 47799999999999999999999999999999999987666655555555553 35557999999953222
Q ss_pred CCCCHHHHHHHHH
Q psy4094 585 IANNPAKIDEFIK 597 (663)
Q Consensus 585 ~~Vs~eei~qlak 597 (663)
-+...++..+.++
T Consensus 167 Lq~~~EeLyqtf~ 179 (842)
T KOG0469|consen 167 LQLSQEELYQTFQ 179 (842)
T ss_pred hcCCHHHHHHHHH
Confidence 2455666555443
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=97.24 E-value=0.0017 Score=70.46 Aligned_cols=85 Identities=18% Similarity=0.076 Sum_probs=61.1
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
...++|.+++|+++...-....+..++..+.. .+++.|||.||+||.+.. .+....+.......++|.+
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~-------~~i~piIVLNK~DL~~~~----~~~~~~~~~~~~g~~Vi~v 177 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE-------SGAEPVIVLTKADLCEDA----EEKIAEVEALAPGVPVLAV 177 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH-------cCCCEEEEEEChhcCCCH----HHHHHHHHHhCCCCcEEEE
Confidence 36789999999999755556677777766663 457889999999996531 1222233332222478999
Q ss_pred eCCCCcCHHHHHHHHH
Q psy4094 608 SAKDNINIDDAAKTLV 623 (663)
Q Consensus 608 SAKtGeNVeELFe~II 623 (663)
|++++.|+++|..+|.
T Consensus 178 Sa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 178 SALDGEGLDVLAAWLS 193 (356)
T ss_pred ECCCCccHHHHHHHhh
Confidence 9999999999888874
No 369
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.22 E-value=0.00077 Score=70.67 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=40.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
.++|+|+|.+|||||||+|++.+... .....++++... ..+.++. .+.+|||||-.
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~----~~~l~DtPGi~ 177 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK----GLELLDTPGIL 177 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC----cEEEEECCCcC
Confidence 47999999999999999999998654 333344444333 3444443 37899999964
No 370
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.21 E-value=0.00058 Score=66.40 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=36.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCC---------CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFF---------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~f---------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
..|+|+|.+|||||||+|.+++... .....++.+.+ ...+.++. .+.||||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~----~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN----GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC----CCEEEeCcC
Confidence 4799999999999999999997543 22233333333 33333332 368999998
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.16 E-value=0.0048 Score=64.71 Aligned_cols=98 Identities=19% Similarity=0.087 Sum_probs=58.8
Q ss_pred EEEEEEeCCCccchhhh----HHHHH--h------cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094 508 IRLQLWDIAGQERFGNM----TRVYY--K------EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl----~~~~~--r------~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG 575 (663)
+.+.|+||+|....... ...+. - .+|.++||+|++.. .+.+ .+...+.+.+ -+.-+|.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~~~~f~~~~-------~~~g~Il 224 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQAKVFNEAV-------GLTGIIL 224 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HHHHHHHhhC-------CCCEEEE
Confidence 67899999996533221 11111 1 38999999999743 3333 2333433221 1346899
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHH
Q psy4094 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLV 623 (663)
Q Consensus 576 NKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~II 623 (663)
||.|..... -.+..++...+ .++.+++ +|++++++-..-.
T Consensus 225 TKlDe~~~~-----G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~~~~ 264 (272)
T TIGR00064 225 TKLDGTAKG-----GIILSIAYELK-LPIKFIG--VGEKIDDLAPFDA 264 (272)
T ss_pred EccCCCCCc-----cHHHHHHHHHC-cCEEEEe--CCCChHhCccCCH
Confidence 999975432 34455556667 4777777 7888877654433
No 372
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.16 E-value=0.0019 Score=61.94 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=37.3
Q ss_pred EEEEEEeCCCccchhhhHHHH--------HhcCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVY--------YKEAVGAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~--------~r~ADgaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKs 578 (663)
..+.++|++|-..-..+...+ .-..+++++++|..+... +.+...+..++.. .=+||.||+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----------ad~ivlnk~ 156 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----------ADRILLNKT 156 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----------CCEEEEecc
Confidence 457889999975433333322 224788999999764322 1122334444442 116799999
Q ss_pred CC
Q psy4094 579 DQ 580 (663)
Q Consensus 579 DL 580 (663)
|+
T Consensus 157 dl 158 (158)
T cd03112 157 DL 158 (158)
T ss_pred cC
Confidence 96
No 373
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.13 E-value=0.0018 Score=70.99 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=56.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCc--------------eeEEEEEEeCCCccch--
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHE--------------TIIRLQLWDIAGQERF-- 521 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge--------------~~vkLqIwDTpGQErf-- 521 (663)
+++.|||.++||||||++.+.+... .....+..+++-..-.+.+.+. ....+.+.|+||-..-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6999999999999999999988765 4333344333444444444331 1246899999995321
Q ss_pred --hh---hHHHHHhcCcEEEEEEeCC
Q psy4094 522 --GN---MTRVYYKEAVGAFIVFDVT 542 (663)
Q Consensus 522 --rs---l~~~~~r~ADgaILVyDVT 542 (663)
.. ..-..++++|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12 2333578899999999985
No 374
>KOG0448|consensus
Probab=97.12 E-value=0.0072 Score=70.26 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=44.8
Q ss_pred EEEEEeCCCcc---chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 509 RLQLWDIAGQE---RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 509 kLqIwDTpGQE---rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
.+.++|.||-. ....+...++.++|++|||....+.-..... .++.... ....-|.++-||+|....
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs-------~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVS-------EEKPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhh-------ccCCcEEEEechhhhhcc
Confidence 36788999853 5677888899999999999988764443332 2222221 113456788889998654
No 375
>KOG4273|consensus
Probab=97.12 E-value=0.0021 Score=67.31 Aligned_cols=163 Identities=19% Similarity=0.245 Sum_probs=98.9
Q ss_pred EEEEEeCCCC--CHHHHHHHHHhCCCCCccccceeeeceeEEEecCCc-eeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 460 KILVIGELGA--GKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE-TIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 460 KIVVLGd~GV--GKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge-~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
-++|+|-.|| ||-+|+.++....|..+........|.--+|.-.-. -.+.+.|.-++. +.|-. .........+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lp-n~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLP-NAEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccC-CcccccceeeEE
Confidence 5889999999 999999999877665444433333333222211100 013344443321 11110 111123356889
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------------------------C-----
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--------------------------I----- 585 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--------------------------~----- 585 (663)
+|||++....+..+..|+..-. . +..++ ++.+|||.|....+ +
T Consensus 84 mvfdlse~s~l~alqdwl~htd----i-nsfdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTD----I-NSFDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred EEEeccchhhhHHHHhhccccc----c-ccchh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 9999999999999999975221 1 11223 57889999964322 0
Q ss_pred ------------CCCHHHHHHHHHHcCCCeEEEEeCCCC------------cCHHHHHHHHHHHHHhhhh
Q psy4094 586 ------------ANNPAKIDEFIKEHNFSGWFETSAKDN------------INIDDAAKTLVQKILENDK 631 (663)
Q Consensus 586 ------------~Vs~eei~qlak~~g~i~ffEtSAKtG------------eNVeELFe~IIr~Ile~~k 631 (663)
......+.+||..+|+ .|++.+|.+. .||+.+|..+-.++...+.
T Consensus 158 egssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi 226 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI 226 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence 0123345678888885 7999998643 4899999988877655443
No 376
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.09 E-value=0.005 Score=68.78 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=61.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh------CCC---CC-cc-----------ccceeeeceeEEEecC------------Cc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH------QFF---SP-HY-----------RATIGVDFALKVLSWD------------HE 505 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg------~~f---se-e~-----------~~TigiDf~~ktV~vd------------ge 505 (663)
.-|+|+|..||||||++..+.. ... .. .| ....++.++......+ ..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~ 180 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK 180 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999988862 110 00 11 1112222221100000 00
Q ss_pred eeEEEEEEeCCCccchhh----hHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 506 TIIRLQLWDIAGQERFGN----MTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 506 ~~vkLqIwDTpGQErfrs----l~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
..+.+.|+||+|...... ....+ ..+.+-++||.|.+-+..- ......|.+.+ -+--+|.||.|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~-------~~~g~IlTKlD 250 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV-------DVGSVIITKLD 250 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc-------CCcEEEEECcc
Confidence 136789999999543321 11222 2246789999998754322 22334443221 24568899999
Q ss_pred CCC
Q psy4094 580 QPK 582 (663)
Q Consensus 580 L~d 582 (663)
...
T Consensus 251 ~~a 253 (429)
T TIGR01425 251 GHA 253 (429)
T ss_pred CCC
Confidence 743
No 377
>KOG0447|consensus
Probab=97.02 E-value=0.0081 Score=68.43 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=59.8
Q ss_pred EEecCCceeEEEEEEeCCCcc-------------chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCC
Q psy4094 499 VLSWDHETIIRLQLWDIAGQE-------------RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565 (663)
Q Consensus 499 tV~vdge~~vkLqIwDTpGQE-------------rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~ 565 (663)
.+.+.|-..-++.+.|.||.. ....+...|+.+.+++|||+-=. |.+.-+.....|-..| .
T Consensus 403 sltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~---D 476 (980)
T KOG0447|consen 403 SLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQM---D 476 (980)
T ss_pred EEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhc---C
Confidence 344443333578999999832 23467888999999999998432 2222222333333322 3
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy4094 566 GNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE 598 (663)
Q Consensus 566 ~~~IPIILVGNKsDL~der~~Vs~eei~qlak~ 598 (663)
..+...|+|.+|.|+.+.. ......+++++..
T Consensus 477 P~GrRTIfVLTKVDlAEkn-lA~PdRI~kIleG 508 (980)
T KOG0447|consen 477 PHGRRTIFVLTKVDLAEKN-VASPSRIQQIIEG 508 (980)
T ss_pred CCCCeeEEEEeecchhhhc-cCCHHHHHHHHhc
Confidence 4567889999999998876 4566777777654
No 378
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.01 E-value=0.0072 Score=61.40 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=53.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC--CCCCc---cccceeeeceeEEEecCCceeEEEEEEeCCCccch------hhhH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ--FFSPH---YRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF------GNMT 525 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~--~fsee---~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf------rsl~ 525 (663)
...-|.|+|..++|||+|+|++++. .|... ..-|.|+-.....+.... ...+.++||+|.... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~--~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGK--EHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCC--cceEEEEecCCcCccccCchhhhhH
Confidence 4467999999999999999999987 55422 233444433333332212 357999999996432 1222
Q ss_pred HHHHhc--CcEEEEEEeCCC
Q psy4094 526 RVYYKE--AVGAFIVFDVTR 543 (663)
Q Consensus 526 ~~~~r~--ADgaILVyDVTd 543 (663)
...+.. ++++|+..+...
T Consensus 84 ~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 84 LFALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHhCEEEEeccCcc
Confidence 223333 788887766654
No 379
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.92 E-value=0.022 Score=54.76 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=60.5
Q ss_pred eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC
Q psy4094 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA 586 (663)
Q Consensus 507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~ 586 (663)
.+.+.|+|+++.... .....+..+|.+|+++..+ ..++..+..+++.+.. .++++.+|.|++|....
T Consensus 92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~-------~~~~~~vV~N~~~~~~~--- 158 (179)
T cd03110 92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRH-------FGIPVGVVINKYDLNDE--- 158 (179)
T ss_pred CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHH-------cCCCEEEEEeCCCCCcc---
Confidence 468999999976422 3445678899999999887 4577777777776663 24678999999996432
Q ss_pred CCHHHHHHHHHHcCCCeEE
Q psy4094 587 NNPAKIDEFIKEHNFSGWF 605 (663)
Q Consensus 587 Vs~eei~qlak~~g~i~ff 605 (663)
..+++.+++..++. +++
T Consensus 159 -~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 159 -IAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred -hHHHHHHHHHHcCC-CeE
Confidence 34667788888875 444
No 380
>PRK13695 putative NTPase; Provisional
Probab=96.91 E-value=0.012 Score=56.75 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=43.4
Q ss_pred HHhcCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE 606 (663)
.+.++++ +++|=- ...+.+ ..+++.+...+ ..+.|+|++.||... ...+..+....++ .+++
T Consensus 93 ~l~~~~~--lllDE~--~~~e~~~~~~~~~l~~~~----~~~~~~i~v~h~~~~--------~~~~~~i~~~~~~-~i~~ 155 (174)
T PRK13695 93 ALEEADV--IIIDEI--GKMELKSPKFVKAVEEVL----DSEKPVIATLHRRSV--------HPFVQEIKSRPGG-RVYE 155 (174)
T ss_pred ccCCCCE--EEEECC--CcchhhhHHHHHHHHHHH----hCCCeEEEEECchhh--------HHHHHHHhccCCc-EEEE
Confidence 3445666 566621 111111 33445555432 245899999998532 1233444444453 5677
Q ss_pred EeCCCCcCHHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~I 626 (663)
+ +.+|=++++..|++.+
T Consensus 156 ~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 156 L---TPENRDSLPFEILNRL 172 (174)
T ss_pred E---cchhhhhHHHHHHHHH
Confidence 6 4556678888888765
No 381
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.89 E-value=0.0022 Score=60.57 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=37.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
..+|+|+|.+|||||||+|.+.+... .....+..+.+... +.++. .+.++||||
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~~----~~~liDtPG 154 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLDN----KIKLLDTPG 154 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEecC----CEEEEECCC
Confidence 36899999999999999999998653 22333444433332 22322 378999998
No 382
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.88 E-value=0.00097 Score=65.35 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCC------CccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFS------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fs------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
-++|+|.+|||||||+|.+++.... .....+-........+.+++. ..|+||||-..+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g----~~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG----GYIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS----EEEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC----cEEEECCCCCcc
Confidence 6899999999999999999975321 111111111122334444443 469999997655
No 383
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.86 E-value=0.0019 Score=69.32 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=41.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
.++++|||-++||||||||++++.... ....+ |..-....+.++.. +.++||||--
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~----i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG----IYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC----eEEecCCCcC
Confidence 478999999999999999999986552 23334 44445555666554 8899999953
No 384
>KOG1491|consensus
Probab=96.79 E-value=0.0053 Score=66.68 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=62.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCC--------------ceeEEEEEEeCCCccc--
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH--------------ETIIRLQLWDIAGQER-- 520 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdg--------------e~~vkLqIwDTpGQEr-- 520 (663)
..++|.|||.++||||||+|.+..........+..++|-..-.+.+.+ .-...|+++|++|--+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 347999999999999999999998777766666666665554554433 2236799999998432
Q ss_pred --hhhhHHHH---HhcCcEEEEEEeCC
Q psy4094 521 --FGNMTRVY---YKEAVGAFIVFDVT 542 (663)
Q Consensus 521 --frsl~~~~---~r~ADgaILVyDVT 542 (663)
-..+...| +|.+|+++.|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 23444444 57899999988765
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.021 Score=65.58 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=73.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-----------C-ccc-----------cceeeeceeEEEec--------CCcee
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-----------P-HYR-----------ATIGVDFALKVLSW--------DHETI 507 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-----------e-e~~-----------~TigiDf~~ktV~v--------dge~~ 507 (663)
-.|+|+|..|+||||++..|...... . .|. ...++.+. ...- .....
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLRD 428 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhcc
Confidence 47899999999999999887642100 0 011 00111111 1000 00013
Q ss_pred EEEEEEeCCCccchhhh-HHH--HHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNM-TRV--YYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl-~~~--~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
+.+.|+||+|....... ... .+. .....+||++.+. .+..+...+..+... .+.-||.||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~--------~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA--------KPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh--------CCeEEEEecCcCcc
Confidence 67899999996432211 100 111 1235677777763 455555555444421 35679999999743
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 583 EGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 583 er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
..-.+..++..++. ++.+++ +|.+|
T Consensus 499 -----~lG~aLsv~~~~~L-PI~yvt--~GQ~V 523 (559)
T PRK12727 499 -----RFGSALSVVVDHQM-PITWVT--DGQRV 523 (559)
T ss_pred -----chhHHHHHHHHhCC-CEEEEe--CCCCc
Confidence 23456666777775 666665 35555
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.72 E-value=0.025 Score=54.14 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=44.0
Q ss_pred EEEEEEeCCCccchh----hhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+|++|...+. .....+. ...+.+++|+|..... ....++..+...+ + ..-+|.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~------~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL------G-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC------C-CCEEEEECCcCC
Confidence 457899999974221 1111122 2489999999986433 2234444444321 1 245777999975
Q ss_pred CCCCCCCHHHHHHHHHHcCC
Q psy4094 582 KEGIANNPAKIDEFIKEHNF 601 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~ 601 (663)
... ..+..++...+.
T Consensus 153 ~~~-----g~~~~~~~~~~~ 167 (173)
T cd03115 153 ARG-----GAALSIRAVTGK 167 (173)
T ss_pred CCc-----chhhhhHHHHCc
Confidence 533 223335555553
No 387
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.029 Score=64.34 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=80.8
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.....|-|+|+|++|+||||||+.++.... ..|+..-....++. .+. .-+|.++.++. +... +.....=||
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvv-sgK-~RRiTflEcp~--Dl~~-miDvaKIaD 135 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVV-SGK-TRRITFLECPS--DLHQ-MIDVAKIAD 135 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEe-ecc-eeEEEEEeChH--HHHH-HHhHHHhhh
Confidence 334568899999999999999998875311 11111111222222 233 56789999882 2222 223445699
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCCCCCCHHHHH-----HHHHH-cCCCeEEE
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQPKEGIANNPAKID-----EFIKE-HNFSGWFE 606 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~der~~Vs~eei~-----qlak~-~g~i~ffE 606 (663)
.+||++|..-+-..+.+ .++..+.. .++ .|+-|++..||.... .....+. .|+.. +..+.+|+
T Consensus 136 LVlLlIdgnfGfEMETm-EFLnil~~-------HGmPrvlgV~ThlDlfk~~--stLr~~KKrlkhRfWtEiyqGaKlFy 205 (1077)
T COG5192 136 LVLLLIDGNFGFEMETM-EFLNILIS-------HGMPRVLGVVTHLDLFKNP--STLRSIKKRLKHRFWTEIYQGAKLFY 205 (1077)
T ss_pred eeEEEeccccCceehHH-HHHHHHhh-------cCCCceEEEEeecccccCh--HHHHHHHHHHhhhHHHHHcCCceEEE
Confidence 99999998865444443 33333332 233 356789999986533 2222222 23332 33357898
Q ss_pred EeCCCC
Q psy4094 607 TSAKDN 612 (663)
Q Consensus 607 tSAKtG 612 (663)
+|...+
T Consensus 206 lsgV~n 211 (1077)
T COG5192 206 LSGVEN 211 (1077)
T ss_pred eccccc
Confidence 886654
No 388
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.60 E-value=0.0087 Score=67.02 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=49.0
Q ss_pred EEEEEEeCCCccchhh-h---HHH--HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q psy4094 508 IRLQLWDIAGQERFGN-M---TRV--YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQ 580 (663)
Q Consensus 508 vkLqIwDTpGQErfrs-l---~~~--~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL 580 (663)
..+.|+||+|...... + ... .+..+|.++||+|.+... .+......+... ++ .-+|.||.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~--------l~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA--------VGIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc--------CCCCEEEEecccC
Confidence 3689999999654321 1 111 134689999999987642 222333444321 22 2578899996
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 581 PKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 581 ~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
... .-.+..++...+. ++.+++.
T Consensus 245 ~a~-----~G~~ls~~~~~~~-Pi~fig~ 267 (437)
T PRK00771 245 TAK-----GGGALSAVAETGA-PIKFIGT 267 (437)
T ss_pred CCc-----ccHHHHHHHHHCc-CEEEEec
Confidence 432 2345556666664 5555544
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.56 E-value=0.014 Score=55.78 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=36.0
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
+.+.|+||+|.... ...++..||-+|+|....-.+.+.-++ + ..+. ..=+||.||+|
T Consensus 92 ~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k-~-~~~~----------~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK-A-GIME----------IADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh-h-hHhh----------hcCEEEEeCCC
Confidence 67899999996422 234888999999988766222222221 1 2222 22379999998
No 390
>PRK12288 GTPase RsgA; Reviewed
Probab=96.53 E-value=0.0038 Score=67.81 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=35.1
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCC-ccccc-----eeeeceeEEEecCCceeEEEEEEeCCCccchh
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQFFSP-HYRAT-----IGVDFALKVLSWDHETIIRLQLWDIAGQERFG 522 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~fse-e~~~T-----igiDf~~ktV~vdge~~vkLqIwDTpGQErfr 522 (663)
++|+|.+|||||||+|+|++..... ...+. -........+.+.++ ..|+||||...|.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~----~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG----GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC----CEEEECCCCCccc
Confidence 7899999999999999999753321 11110 001112223333332 2499999987664
No 391
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.51 E-value=0.015 Score=51.01 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=52.3
Q ss_pred EEEEe-CCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 461 ILVIG-ELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 461 IVVLG-d~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
|+|+| .+|+||||+...+...-. ....+ .-.++.+.. +.+.|+|+++.... .....+..+|.+|++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~~~~~-------vl~~d~d~~--~d~viiD~p~~~~~--~~~~~l~~ad~viv~~ 69 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-RRGKR-------VLLIDLDPQ--YDYIIIDTPPSLGL--LTRNALAAADLVLIPV 69 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-hCCCc-------EEEEeCCCC--CCEEEEeCcCCCCH--HHHHHHHHCCEEEEec
Confidence 56666 679999999877654211 11111 222222322 56899999987533 2336778899999999
Q ss_pred eCCCcccHHHHHHHHH
Q psy4094 540 DVTRAATFDAVLKWKQ 555 (663)
Q Consensus 540 DVTd~~SFe~L~~wie 555 (663)
+.+ ..++..+..+++
T Consensus 70 ~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 70 QPS-PLDLDGLEKLLE 84 (104)
T ss_pred cCC-HHHHHHHHHHHH
Confidence 764 566777776665
No 392
>KOG3859|consensus
Probab=96.48 E-value=0.01 Score=63.26 Aligned_cols=113 Identities=17% Similarity=0.353 Sum_probs=69.0
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc----cccceeeeceeEEEecC-CceeEEEEEEeCCCc-------cchhhh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH----YRATIGVDFALKVLSWD-HETIIRLQLWDIAGQ-------ERFGNM 524 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee----~~~TigiDf~~ktV~vd-ge~~vkLqIwDTpGQ-------Erfrsl 524 (663)
..|+|+.||..|.||||||..+.+-.|..+ ..+++. ....+..+. .+..++|.|.||.|- +.|..+
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~--L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVK--LQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCce--eecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 469999999999999999999998777543 233443 333333332 223588999999982 122221
Q ss_pred H-------HHH-------------Hh--cCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 525 T-------RVY-------------YK--EAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 525 ~-------~~~-------------~r--~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
. ..| |+ ..++|++.+..+ +.++..+. ..+..|. ..+-||-|+-|.|-
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld--------skVNIIPvIAKaDt 188 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD--------SKVNIIPVIAKADT 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh--------hhhhhHHHHHHhhh
Confidence 1 111 22 356788777776 45555543 2334444 23556666678774
No 393
>PRK10867 signal recognition particle protein; Provisional
Probab=96.46 E-value=0.025 Score=63.32 Aligned_cols=86 Identities=9% Similarity=0.067 Sum_probs=49.3
Q ss_pred EEEEEEeCCCccchh----hhHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+||+|..... .....+ +-..+.+++|.|.+.. +.+..+...+...+ ++ .-+|.||.|..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~------~i-~giIlTKlD~~ 253 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL------GL-TGVILTKLDGD 253 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC------CC-CEEEEeCccCc
Confidence 568999999953221 111111 1256788999998643 34445555555321 11 24677999964
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
... -.+..++...+. ++.++..
T Consensus 254 ~rg-----G~alsi~~~~~~-PI~fig~ 275 (433)
T PRK10867 254 ARG-----GAALSIRAVTGK-PIKFIGT 275 (433)
T ss_pred ccc-----cHHHHHHHHHCc-CEEEEeC
Confidence 322 236667777774 6666554
No 394
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.41 E-value=0.012 Score=65.76 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=53.9
Q ss_pred EEEEEEeCCCccchhh-hH---HHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFGN-MT---RVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfrs-l~---~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+||+|...... +. ..+ .-+.+.++||+|.+.. +.+..+...+...+. ..-+|.||.|..
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~-------i~giIlTKlD~~ 252 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG-------LTGVVLTKLDGD 252 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC-------CCEEEEeCccCc
Confidence 5689999999532211 11 111 2357899999998743 445555555553321 124779999964
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
... -.+..++...+. ++.++.. |+++++
T Consensus 253 ~~~-----G~~lsi~~~~~~-PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 253 ARG-----GAALSVRSVTGK-PIKFIGV--GEKIDD 280 (428)
T ss_pred ccc-----cHHHHHHHHHCc-CEEEEeC--CCChhh
Confidence 322 236677777774 6666654 444443
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.048 Score=60.11 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=73.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC---Cccccceeeece----------------eEEEecCC----------ceeEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS---PHYRATIGVDFA----------------LKVLSWDH----------ETIIR 509 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs---ee~~~TigiDf~----------------~ktV~vdg----------e~~vk 509 (663)
-.|+|+|+.||||||++..+...... ......++.|.+ .....+.. -....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 37899999999999999998753110 011111111111 00111110 01256
Q ss_pred EEEEeCCCccchhh----hHHHHHhc---CcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCC
Q psy4094 510 LQLWDIAGQERFGN----MTRVYYKE---AVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQ 580 (663)
Q Consensus 510 LqIwDTpGQErfrs----l~~~~~r~---ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL 580 (663)
+.|+||+|...+.. .... +.. +.-.+||++.+... ....+ +..+..........-. .-=+|.+|.|-
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~-L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAM-LHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHH-HhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEecccc
Confidence 89999999653322 1221 222 34558899988643 23332 2222221100000000 12477799996
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 581 PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 581 ~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
... .-.+..++..++. ++.+++. |.+|-+
T Consensus 294 t~~-----~G~~l~~~~~~~l-Pi~yvt~--Gq~VPe 322 (374)
T PRK14722 294 ASN-----LGGVLDTVIRYKL-PVHYVST--GQKVPE 322 (374)
T ss_pred CCC-----ccHHHHHHHHHCc-CeEEEec--CCCCCc
Confidence 542 3455666777774 5666653 444443
No 396
>PRK13796 GTPase YqeH; Provisional
Probab=96.28 E-value=0.0063 Score=66.28 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=36.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC------CccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
.+++|||.+|||||||+|+++..... ....++.+.+ ...+.++++ ..|+||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~----~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG----SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC----cEEEECCCcc
Confidence 37999999999999999999864311 1223333333 334444443 4699999964
No 397
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.24 E-value=0.0075 Score=62.16 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
.++|+|.+|||||||+|++++..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 68999999999999999999753
No 398
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.16 E-value=0.01 Score=64.48 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=37.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCC------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFF------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~f------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr 520 (663)
.+|+|+|.+|||||||+|++++... .....+..+.+. ..+.+++. +.|+||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~~----~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDDG----HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCCC----CEEEECCCCCC
Confidence 4899999999999999999997432 223334444333 23444333 57999999643
No 399
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.09 E-value=0.026 Score=52.87 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=62.5
Q ss_pred EEEeCCCCCHHHHHHHHHhCCCCCccccceee--eceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 462 LVIGELGAGKTSIIKRYVHQFFSPHYRATIGV--DFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 462 VVLGd~GVGKTSLInrLlg~~fsee~~~Tigi--Df~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
+.-|.+|+|||++...+...-. ....+..-+ |.....+ .+.+.|+|+++.. .......+..+|.+|++.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~~~~~------~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~ 74 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADLGLANL------DYDYIIIDTGAGI--SDNVLDFFLAADEVIVVT 74 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCCCCCC------CCCEEEEECCCCC--CHHHHHHHHhCCeEEEEc
Confidence 3457889999999877653211 111111111 1111111 1568999999753 333456788999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
+.+ ..++..+...++.+... ....++.+|.|+++-
T Consensus 75 ~~~-~~s~~~~~~~l~~l~~~-----~~~~~~~lVvN~~~~ 109 (139)
T cd02038 75 TPE-PTSITDAYALIKKLAKQ-----LRVLNFRVVVNRAES 109 (139)
T ss_pred CCC-hhHHHHHHHHHHHHHHh-----cCCCCEEEEEeCCCC
Confidence 876 45555555555555432 123567899999974
No 400
>PRK12289 GTPase RsgA; Reviewed
Probab=96.05 E-value=0.011 Score=64.49 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=34.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCC-ccccc-----eeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSP-HYRAT-----IGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fse-e~~~T-----igiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
.++|+|.+|||||||+|.|++..... ...+. -........+.+.++ ..|+||||-..+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g----~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG----GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC----cEEEeCCCcccc
Confidence 38999999999999999999653221 11111 001111233344333 259999997544
No 401
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.05 E-value=0.011 Score=62.10 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=36.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCcc-c-----cceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHY-R-----ATIGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~-~-----~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
-.++++|.+|||||||++.+++....... . .+.........+.+.+. ..++||||...|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~----~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG----GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC----CEEEECCCCCcc
Confidence 37999999999999999999875432111 1 11111122233344322 259999998765
No 402
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.02 E-value=0.025 Score=60.63 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=68.9
Q ss_pred hhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC
Q psy4094 522 GNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN 600 (663)
Q Consensus 522 rsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g 600 (663)
..+.+--+.+.|-+|||+++.+++ +...+..++-... ..++..|||.||+||.++. ....++...+....|
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae-------~~gi~pvIvlnK~DL~~~~-~~~~~~~~~~y~~~g 141 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE-------AGGIEPVIVLNKIDLLDDE-EAAVKELLREYEDIG 141 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH-------HcCCcEEEEEEccccCcch-HHHHHHHHHHHHhCC
Confidence 344444566788899999999876 5666666665554 2567788999999998754 111134555666677
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
. ..+.+|++++.+++++...+..++
T Consensus 142 y-~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 142 Y-PVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred e-eEEEecCcCcccHHHHHHHhcCCe
Confidence 5 799999999999999998876554
No 403
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.99 E-value=0.04 Score=48.37 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
.|+|+|++|+|||+|++.+....
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999988753
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.035 Score=62.04 Aligned_cols=103 Identities=11% Similarity=0.130 Sum_probs=56.3
Q ss_pred EEEEEEeCCCccchh----hhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
..+.++||+|..... .....+.. ...-.+||.|.+- ..+.+..++..+.. . -.-=+|.+|.|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~--~~~~~~~~~~~f~~-------~-~~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS--SGDTLDEVISAYQG-------H-GIHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC--CHHHHHHHHHHhcC-------C-CCCEEEEEeeeCC
Confidence 467899999964321 22222221 2346778999883 23344444443331 0 1224888999964
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH-HHHHH----HHHHHHHh
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI-DDAAK----TLVQKILE 628 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV-eELFe----~IIr~Ile 628 (663)
.. .-.+..++..++. ++.+++ +|.+| +++.. .+++.++.
T Consensus 340 ~~-----~G~~l~~~~~~~l-Pi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 340 AS-----LGIALDAVIRRKL-VLHYVT--NGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred CC-----ccHHHHHHHHhCC-CEEEEE--CCCCchhhhhhCCHHHHHHHHhc
Confidence 42 3445667777775 566664 46666 44432 24454544
No 405
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.92 E-value=0.12 Score=58.03 Aligned_cols=142 Identities=17% Similarity=0.267 Sum_probs=80.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCC-----------------CC----ccccceeeec---eeEEEecCCceeEEEEEEe
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFF-----------------SP----HYRATIGVDF---ALKVLSWDHETIIRLQLWD 514 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~f-----------------se----e~~~TigiDf---~~ktV~vdge~~vkLqIwD 514 (663)
+=|.|||+..+|||||+.||+.--. ++ ....|..--| ....+.++++..+++.++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 5699999999999999999983111 10 1111111122 2234556655578999999
Q ss_pred CCC--------cc-----ch------hh---hHH-------HHHh--cCcEEEEEEeCC--C--cccHHHH-HHHHHHHH
Q psy4094 515 IAG--------QE-----RF------GN---MTR-------VYYK--EAVGAFIVFDVT--R--AATFDAV-LKWKQDLD 558 (663)
Q Consensus 515 TpG--------QE-----rf------rs---l~~-------~~~r--~ADgaILVyDVT--d--~~SFe~L-~~wieeL~ 558 (663)
+-| +. |+ .. ... ..++ ..=|+++.-|-+ + ++.|..+ ...+.+|+
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 877 11 11 00 000 0111 122444443332 2 3344433 35667777
Q ss_pred hhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 559 AKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 559 ~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
. -+.|+|++.|=.+-.. ....+.+.++...|+. +.+.+++..
T Consensus 178 ~-------igKPFvillNs~~P~s---~et~~L~~eL~ekY~v-pVlpvnc~~ 219 (492)
T PF09547_consen 178 E-------IGKPFVILLNSTKPYS---EETQELAEELEEKYDV-PVLPVNCEQ 219 (492)
T ss_pred H-------hCCCEEEEEeCCCCCC---HHHHHHHHHHHHHhCC-cEEEeehHH
Confidence 4 3689999999887433 2355666777777884 777777654
No 406
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.91 E-value=0.013 Score=58.63 Aligned_cols=141 Identities=18% Similarity=0.210 Sum_probs=74.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh----C----------CCC-------CccccceeeeceeEEEecC------------Cc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH----Q----------FFS-------PHYRATIGVDFALKVLSWD------------HE 505 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg----~----------~fs-------ee~~~TigiDf~~ktV~vd------------ge 505 (663)
..|+|+|+.||||||.+-++.. . .|. ..|....++.+.......+ ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 3689999999999999987752 1 111 0111222333221110000 00
Q ss_pred eeEEEEEEeCCCccchh----hhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 506 TIIRLQLWDIAGQERFG----NMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 506 ~~vkLqIwDTpGQErfr----sl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
..+.+.|+||+|...+. ..+..++ ...+-++||.|++... +.+. .+..+...+. + -=+|.+|.|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~-~~~~~~~~~~------~-~~lIlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLE-QALAFYEAFG------I-DGLILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHH-HHHHHHHHSS------T-CEEEEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHH-HHHHHhhccc------C-ceEEEEeec
Confidence 02468999999954322 1222222 2467899999998643 2333 2222332211 1 147789999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 580 L~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
.... .-.+..++...+. ++-+++- |.+|++
T Consensus 152 et~~-----~G~~l~~~~~~~~-Pi~~it~--Gq~V~D 181 (196)
T PF00448_consen 152 ETAR-----LGALLSLAYESGL-PISYITT--GQRVDD 181 (196)
T ss_dssp SSST-----THHHHHHHHHHTS-EEEEEES--SSSTTG
T ss_pred CCCC-----cccceeHHHHhCC-CeEEEEC--CCChhc
Confidence 6442 3456677777774 6666653 555543
No 407
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.90 E-value=0.11 Score=56.02 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=51.4
Q ss_pred EEEEEeCCCccchhhhHHHHHh--------cCcEEEEEEeCCCcccHH-HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 509 RLQLWDIAGQERFGNMTRVYYK--------EAVGAFIVFDVTRAATFD-AVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 509 kLqIwDTpGQErfrsl~~~~~r--------~ADgaILVyDVTd~~SFe-~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
...|+.+.|-..-..+...++. ..+++|.|+|+.+..... .......++. . .=+||.||+|
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~----~------AD~IvlnK~D 161 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG----Y------ADRILLTKTD 161 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH----h------CCEEEEeccc
Confidence 4567788887665555555432 247899999987532211 1111223333 1 1279999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcC-CCeEEEEeCCCCcCHHHHH
Q psy4094 580 QPKEGIANNPAKIDEFIKEHN-FSGWFETSAKDNINIDDAA 619 (663)
Q Consensus 580 L~der~~Vs~eei~qlak~~g-~i~ffEtSAKtGeNVeELF 619 (663)
+..+. +.+.+..+..+ ..+++.+. ........+|
T Consensus 162 l~~~~-----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 162 VAGEA-----EKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred cCCHH-----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 87632 45555555543 34555543 2233444444
No 408
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.034 Score=68.77 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=65.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCC--cc----ccceeeeceeEEEecCCceeEEEEEEeCCCcc--------chhhhH
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSP--HY----RATIGVDFALKVLSWDHETIIRLQLWDIAGQE--------RFGNMT 525 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fse--e~----~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE--------rfrsl~ 525 (663)
=.+|||.+|+||||++.. .+..|.- .. ...+| .......+.+ .-.++||+|.- .....|
T Consensus 127 Wy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d----eaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG--TRNCDWWFTD----EAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred ceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC--CcccCccccc----ceEEEcCCcceecccCcchhhHHHH
Confidence 368999999999999954 2333321 11 11111 1111122222 36799999821 233455
Q ss_pred HHHH---------hcCcEEEEEEeCCCccc---------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 526 RVYY---------KEAVGAFIVFDVTRAAT---------FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 526 ~~~~---------r~ADgaILVyDVTd~~S---------Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
..++ +-.||||++.|+.+--. ...+..-+.+|...+ ...+||.|++||.|+..
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL----~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL----HARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh----ccCCceEEEEecccccc
Confidence 5442 45799999999976221 122333455565543 25699999999999865
No 409
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.85 E-value=0.011 Score=63.21 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=37.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCC------CCccccceeeeceeEEEecC-CceeEEEEEEeCCCccchh
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFF------SPHYRATIGVDFALKVLSWD-HETIIRLQLWDIAGQERFG 522 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~f------see~~~TigiDf~~ktV~vd-ge~~vkLqIwDTpGQErfr 522 (663)
-.+++|.+|||||||+|++..+.. .+....+-........+.++ ++ .|+||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG-----~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG-----WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC-----EEEeCCCCCccC
Confidence 578999999999999999986321 22221222222334555564 33 589999976653
No 410
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.78 E-value=0.19 Score=47.48 Aligned_cols=81 Identities=11% Similarity=-0.028 Sum_probs=51.6
Q ss_pred EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy4094 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN 588 (663)
Q Consensus 509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs 588 (663)
.+.|+|+++.... .....+..+|.+|++.+.+ ..++..+..+++.+... ....+.+|.|+.|..... .
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~------~~~~~~iv~N~~~~~~~~---~ 131 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL------GIKVVGVIVNRVRPDMVE---G 131 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc------CCceEEEEEeCCcccccc---h
Confidence 5899999986433 3445678899999999776 45666666666666531 123467999999864322 2
Q ss_pred HHHHHHHHHHcCC
Q psy4094 589 PAKIDEFIKEHNF 601 (663)
Q Consensus 589 ~eei~qlak~~g~ 601 (663)
.+....+...++.
T Consensus 132 ~~~~~~~~~~~~~ 144 (179)
T cd02036 132 GDMVEDIEEILGV 144 (179)
T ss_pred hhHHHHHHHHhCC
Confidence 2223445555564
No 411
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.74 E-value=0.032 Score=54.33 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=41.0
Q ss_pred EEEEEEeCCCccchhhh--HHHH---HhcCcEEEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNM--TRVY---YKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl--~~~~---~r~ADgaILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
....|+.+.|...-..+ .... .-..+.+|.|+|..+-.....+. .+..+|. . .=+||.||+|+.
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~----~------ADvIvlnK~D~~ 154 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA----F------ADVIVLNKIDLV 154 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC----T-------SEEEEE-GGGH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch----h------cCEEEEeccccC
Confidence 34567777775443333 1111 22368899999997643333332 2333333 1 127999999986
Q ss_pred CCCCCCCHHHHHHHHHHcC
Q psy4094 582 KEGIANNPAKIDEFIKEHN 600 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g 600 (663)
... ...+..+++.+..+
T Consensus 155 ~~~--~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 155 SDE--QKIERVREMIRELN 171 (178)
T ss_dssp HHH----HHHHHHHHHHH-
T ss_pred Chh--hHHHHHHHHHHHHC
Confidence 532 12245555555543
No 412
>PRK00098 GTPase RsgA; Reviewed
Probab=95.71 E-value=0.018 Score=60.87 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCc-cccc---ee--eeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPH-YRAT---IG--VDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee-~~~T---ig--iDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
.++|+|.+|||||||+|.+++...... ..+. -| .......+.+++. ..|+||||...+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~----~~~~DtpG~~~~ 229 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG----GLLIDTPGFSSF 229 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC----cEEEECCCcCcc
Confidence 689999999999999999987533211 1110 00 1112233334332 368999997643
No 413
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.59 E-value=0.073 Score=47.85 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=60.6
Q ss_pred EeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC
Q psy4094 464 IGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR 543 (663)
Q Consensus 464 LGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd 543 (663)
=+.+|+||||+...+...-.........-+| .+-.....+.|+|+++.... .....+..||.+|++.+.+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-------~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~- 75 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVD-------LDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD- 75 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-------CCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-
Confidence 3567899999887765421111122222222 22111126899999986533 3445778899999998765
Q ss_pred cccHHHHHHHHHHHHhhcCCCCCC-CCcEEEEEeC
Q psy4094 544 AATFDAVLKWKQDLDAKVTLPDGN-PIPCVLLANK 577 (663)
Q Consensus 544 ~~SFe~L~~wieeL~~~~~~~~~~-~IPIILVGNK 577 (663)
..++..+..+++.+... ... ...+.+|+|+
T Consensus 76 ~~s~~~~~~~~~~l~~~----~~~~~~~~~lVvNr 106 (106)
T cd03111 76 LPSIRNAKRLLELLRVL----DYSLPAKIELVLNR 106 (106)
T ss_pred hHHHHHHHHHHHHHHHc----CCCCcCceEEEecC
Confidence 56777777777777642 222 3467788875
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.59 E-value=0.062 Score=59.99 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=51.7
Q ss_pred EEEEEEeCCCccchh----hhHHHHHh---cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCC
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVYYK---EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCD 579 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~~r---~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsD 579 (663)
+.+.|+||+|..... .....++. ...-++||++.+-. ...+...+..+.. ++ --||.+|.|
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---------~~~~~vI~TKlD 368 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---------LPLDGLIFTKLD 368 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---------CCCCEEEEeccc
Confidence 578999999964332 22333444 23466788887632 2333333333331 22 258899999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 580 L~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
-... .-.+..++...+. ++.+++. |.+|
T Consensus 369 et~~-----~G~i~~~~~~~~l-Pv~yit~--Gq~V 396 (424)
T PRK05703 369 ETSS-----LGSILSLLIESGL-PISYLTN--GQRV 396 (424)
T ss_pred cccc-----ccHHHHHHHHHCC-CEEEEeC--CCCC
Confidence 7442 2356777777885 6666653 5665
No 415
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.55 E-value=0.089 Score=43.67 Aligned_cols=68 Identities=22% Similarity=0.148 Sum_probs=44.3
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh-HHHHHhcCcEEEEEE
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM-TRVYYKEAVGAFIVF 539 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl-~~~~~r~ADgaILVy 539 (663)
|++.|..|+||||++..+...--. ...+.+.++ .+.|+|+++....... .......+|.+++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----------~g~~v~~~~-----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~ 66 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----------RGKRVLLID-----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVT 66 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----------CCCeEEEEC-----CEEEEeCCCCccchhhhhhhhhhhCCEEEEec
Confidence 678899999999999887642111 111222222 3789999986543321 245667799999999
Q ss_pred eCCC
Q psy4094 540 DVTR 543 (663)
Q Consensus 540 DVTd 543 (663)
+...
T Consensus 67 ~~~~ 70 (99)
T cd01983 67 TPEA 70 (99)
T ss_pred CCch
Confidence 7764
No 416
>PF05729 NACHT: NACHT domain
Probab=95.43 E-value=0.03 Score=51.53 Aligned_cols=21 Identities=29% Similarity=0.743 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
|+|.|++|+|||+|+.+++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998753
No 417
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.30 E-value=0.25 Score=53.67 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=55.8
Q ss_pred EEEEEEeCCCccchhhhHHHHH-------hcCcEEEEEEeCCCccc--H--------------------HHHHH-HHHHH
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYY-------KEAVGAFIVFDVTRAAT--F--------------------DAVLK-WKQDL 557 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~-------r~ADgaILVyDVTd~~S--F--------------------e~L~~-wieeL 557 (663)
....++.+.|-.....+...+. -..|++|.|+|+.+-.. + ..+.. +..++
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 4567888888776665555542 13578999999874321 1 00111 12333
Q ss_pred HhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-cC-CCeEEEEeCCCCcCHHHHHHH
Q psy4094 558 DAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-HN-FSGWFETSAKDNINIDDAAKT 621 (663)
Q Consensus 558 ~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-~g-~i~ffEtSAKtGeNVeELFe~ 621 (663)
. ..=+||.||+|+..+. ..+.+.+..+. .+ ...++++. ........+|..
T Consensus 173 ~----------~AD~IvlnK~Dl~~~~---~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~~ 224 (341)
T TIGR02475 173 A----------CADLVILNKADLLDAA---GLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLGL 224 (341)
T ss_pred H----------hCCEEEEeccccCCHH---HHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhCC
Confidence 2 1127999999987643 34455555555 33 23456554 334566666653
No 418
>PF13173 AAA_14: AAA domain
Probab=95.20 E-value=0.038 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
-++|.|..+||||||+.+++...
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998653
No 419
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.78 Score=45.91 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=74.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCC-Ccc--------------ch-
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIA-GQE--------------RF- 521 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTp-GQE--------------rf- 521 (663)
.+||.|-|.+|||||||+.++...--... -.+| -|....+.-++. .+-|.|.|+. |.. +|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvg-Gf~t~EVR~gGk-R~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVG-GFITPEVREGGK-RIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceee-eEEeeeeecCCe-EeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 47999999999999999998874211110 1111 233333443332 4445555554 211 11
Q ss_pred ------h----hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy4094 522 ------G----NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAK 591 (663)
Q Consensus 522 ------r----sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~ee 591 (663)
. ......+..||++|+ |=--+..|. ...+...+...+ ..+.|+|.+..+.+...
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElk-s~~f~~~ve~vl----~~~kpliatlHrrsr~P--------- 144 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPMELK-SKKFREAVEEVL----KSGKPLIATLHRRSRHP--------- 144 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhc-cHHHHHHHHHHh----cCCCcEEEEEecccCCh---------
Confidence 1 122334455676654 332222221 133444444432 24578888888765311
Q ss_pred HHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 592 IDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 592 i~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
..+-++..+.. |+. .+-.|=+.++..|++.+
T Consensus 145 ~v~~ik~~~~v-~v~---lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 145 LVQRIKKLGGV-YVF---LTPENRNRILNEILSVL 175 (179)
T ss_pred HHHHhhhcCCE-EEE---EccchhhHHHHHHHHHh
Confidence 22233444543 332 45556668888887765
No 420
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.083 Score=59.12 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCC---------CCc------------cccceeeeceeEE--------Ee-cCCceeE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFF---------SPH------------YRATIGVDFALKV--------LS-WDHETII 508 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~f---------see------------~~~TigiDf~~kt--------V~-vdge~~v 508 (663)
..|+|+|..||||||++..+..... ..+ +....++.+.... +. +.....+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 4799999999999999998863110 000 0011111111000 00 0000024
Q ss_pred EEEEEeCCCccchh----hhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 509 RLQLWDIAGQERFG----NMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 509 kLqIwDTpGQErfr----sl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
.+.|+||+|..... ..+..++. ..+.++||+|++-. ...+..++..+... -.-=||.+|.|-..
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~--------~idglI~TKLDET~ 391 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI--------HIDGIVFTKFDETA 391 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC--------CCCEEEEEcccCCC
Confidence 68999999964321 11222332 35678899887632 23344455444420 11248889999655
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 583 EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 583 er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
. .-.+..++...++ ++.+++ +|.+|-+
T Consensus 392 k-----~G~iLni~~~~~l-PIsyit--~GQ~VPe 418 (436)
T PRK11889 392 S-----SGELLKIPAVSSA-PIVLMT--DGQDVKK 418 (436)
T ss_pred C-----ccHHHHHHHHHCc-CEEEEe--CCCCCCc
Confidence 2 2345566777775 555554 3555443
No 421
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.04 E-value=0.15 Score=56.73 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=50.7
Q ss_pred EEEEEEeCCCccchh----hhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+||+|...+. .....++. ..+.++||.+.+ .....+..++..+.. - -+--+|.+|.|-.
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~-------l-~i~glI~TKLDET 355 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE-------I-PIDGFIITKMDET 355 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc-------C-CCCEEEEEcccCC
Confidence 578999999974322 22233333 235666776653 333444444333221 1 1225889999965
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
.. .-.+..++...+. ++.+++. |.+|.+
T Consensus 356 ~~-----~G~~Lsv~~~tgl-PIsylt~--GQ~Vpd 383 (407)
T PRK12726 356 TR-----IGDLYTVMQETNL-PVLYMTD--GQNITE 383 (407)
T ss_pred CC-----ccHHHHHHHHHCC-CEEEEec--CCCCCc
Confidence 42 3455667777775 6666654 555543
No 422
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.02 E-value=0.11 Score=59.21 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=54.3
Q ss_pred EEEEEEeCCCccchhh---hHHHHHhcC---cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFGN---MTRVYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfrs---l~~~~~r~A---DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
..+.++||+|...... .....+... .-.+||+|.+-.. ..+.+.+..+.. . ..--+|.||.|-.
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~-------~-~~~g~IlTKlDet 404 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG-------P-GLAGCILTKLDEA 404 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc-------C-CCCEEEEeCCCCc
Confidence 3578999999432221 111122221 2267888887422 333333333321 1 1234678999964
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH-HHHHH----HHHHHHHh
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI-DDAAK----TLVQKILE 628 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV-eELFe----~IIr~Ile 628 (663)
. ..-.+..++..++. ++.+++ +|.+| ++|.. .+++.++.
T Consensus 405 ~-----~~G~~l~i~~~~~l-PI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 405 A-----SLGGALDVVIRYKL-PLHYVS--NGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred c-----cchHHHHHHHHHCC-CeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence 4 23456667777775 666664 46677 54432 35555554
No 423
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.13 Score=56.92 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=53.3
Q ss_pred EEEEEEeCCCccchh----hhHHHHHhcC--c-EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVYYKEA--V-GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~~r~A--D-gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
+.+.|+||+|..... .....++..+ + -.+||.|++.. ...+...+..+.. + -+-=+|.+|.|-
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-~-------~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-F-------SYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-C-------CCCEEEEEeccC
Confidence 679999999964322 1222333332 3 57899999865 3344444333321 0 122488899996
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH-HHHH
Q psy4094 581 PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI-DDAA 619 (663)
Q Consensus 581 ~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV-eELF 619 (663)
... .-.+..++...+. ++.+++ +|.+| +++.
T Consensus 325 t~~-----~G~~l~~~~~~~~-Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 325 TTC-----VGNLISLIYEMRK-EVSYVT--DGQIVPHNIS 356 (388)
T ss_pred CCc-----chHHHHHHHHHCC-CEEEEe--CCCCChhhhh
Confidence 443 2445566666774 565554 46677 4443
No 424
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.83 E-value=0.42 Score=51.85 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=50.7
Q ss_pred EEEEEEeCCCccchhhhHHHHHh--------cCcEEEEEEeCCCcccHHH-HHH-HHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYK--------EAVGAFIVFDVTRAATFDA-VLK-WKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r--------~ADgaILVyDVTd~~SFe~-L~~-wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
+...++.+.|-..-..+...++. .-|++|-|+|+.+-..... +.. ...++. ..=+||.||
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia----------~AD~ivlNK 154 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA----------FADVIVLNK 154 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH----------hCcEEEEec
Confidence 34566777775443333333332 2477899999876433221 222 222332 112799999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHcCC-CeEEEEeCC
Q psy4094 578 CDQPKEGIANNPAKIDEFIKEHNF-SGWFETSAK 610 (663)
Q Consensus 578 sDL~der~~Vs~eei~qlak~~g~-i~ffEtSAK 610 (663)
+|+.+.. ..+..++..+..+- .+++.++..
T Consensus 155 ~Dlv~~~---~l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 155 TDLVDAE---ELEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred ccCCCHH---HHHHHHHHHHHhCCCCeEEEcccc
Confidence 9998754 24555666666543 567777763
No 425
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.23 Score=59.37 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=78.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCc---cccceeeece----------------eEEEecCC----------ceeEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPH---YRATIGVDFA----------------LKVLSWDH----------ETIIRL 510 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee---~~~TigiDf~----------------~ktV~vdg----------e~~vkL 510 (663)
-|+|||..||||||++..+........ ...-++.|.+ .....+.+ -..+.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 689999999999999988874321000 0000111110 00000000 012468
Q ss_pred EEEeCCCccc----hhhhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 511 QLWDIAGQER----FGNMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 511 qIwDTpGQEr----frsl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
.|+||+|... ......... ...+-.+||.|.+.. .+.+...+..+.... ..+ +-=+|.+|.|-...
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~----~~~-i~glIlTKLDEt~~- 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGA----GED-VDGCIITKLDEATH- 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcc----cCC-CCEEEEeccCCCCC-
Confidence 9999999321 112222222 234567899998742 233333333333210 001 12478999996542
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH-HHHHH----HHHHHHHh
Q psy4094 585 IANNPAKIDEFIKEHNFSGWFETSAKDNINI-DDAAK----TLVQKILE 628 (663)
Q Consensus 585 ~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV-eELFe----~IIr~Ile 628 (663)
.-.+..++...+. ++.+++ +|.+| +++.. .+++.++.
T Consensus 339 ----~G~iL~i~~~~~l-PI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 339 ----LGPALDTVIRHRL-PVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred ----ccHHHHHHHHHCC-CeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 2445666777774 666664 46666 45433 35555554
No 426
>PHA02518 ParA-like protein; Provisional
Probab=94.40 E-value=0.25 Score=48.05 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=42.0
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCD 579 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsD 579 (663)
+.+.|+|++|.. ..+....+..+|.+|++...+ ..++..+..++..+...... ..+.+ +.||.|+.+
T Consensus 77 ~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 77 YDYVVVDGAPQD--SELARAALRIADMVLIPVQPS-PFDIWAAPDLVELIKARQEV--TDGLPKFAFIISRAI 144 (211)
T ss_pred CCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCC-hhhHHHHHHHHHHHHHHHhh--CCCCceEEEEEeccC
Confidence 678999999873 455677888999999999776 34444444444433332111 12344 456778765
No 427
>PRK04195 replication factor C large subunit; Provisional
Probab=94.38 E-value=0.45 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|.|++|+|||++++.++..
T Consensus 41 ~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.29 E-value=0.37 Score=50.95 Aligned_cols=139 Identities=16% Similarity=0.197 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC---------C------------ccccceeeeceeEEEe----------cCCcee
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS---------P------------HYRATIGVDFALKVLS----------WDHETI 507 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs---------e------------e~~~TigiDf~~ktV~----------vdge~~ 507 (663)
-+|+|+|..|+|||||+..+...... . .+....++.+... .. +.....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 48999999999999999877532100 0 0111111111110 00 000012
Q ss_pred EEEEEEeCCCccchh----hhHHHHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFG----NMTRVYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~~~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+||+|..... ..+..++. ..+-++||.|++- ..+.+..++..+.. + -+-=+|.+|.|-.
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~-~-------~~~~~I~TKlDet 224 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM--KSKDMIEIITNFKD-I-------HIDGIVFTKFDET 224 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc--CHHHHHHHHHHhCC-C-------CCCEEEEEeecCC
Confidence 578999999965321 11222222 3567889999863 22344445554442 1 1224888999965
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
... -.+..++...+. ++.+++ +|.+|-
T Consensus 225 ~~~-----G~~l~~~~~~~~-Pi~~it--~Gq~vp 251 (270)
T PRK06731 225 ASS-----GELLKIPAVSSA-PIVLMT--DGQDVK 251 (270)
T ss_pred CCc-----cHHHHHHHHHCc-CEEEEe--CCCCCC
Confidence 522 345566666774 555554 344444
No 429
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.13 Score=57.70 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCC-CC---------Cc------------cccceeeeceeEE-----E-ecCCceeEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQF-FS---------PH------------YRATIGVDFALKV-----L-SWDHETIIRL 510 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~-fs---------ee------------~~~TigiDf~~kt-----V-~vdge~~vkL 510 (663)
.-|+|+|.+||||||++.+|.... .. .+ |....++.+.... . .+.. ..+.+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~-~~~D~ 302 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-DGSEL 302 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh-CCCCE
Confidence 368899999999999999987421 00 00 0011122221100 0 0000 12568
Q ss_pred EEEeCCCccch-h---hhHHHHHhc-----CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 511 QLWDIAGQERF-G---NMTRVYYKE-----AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 511 qIwDTpGQErf-r---sl~~~~~r~-----ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
.|+||+|.... . ..+..++.. ..-.+||+|++-.. +.+...+..+.. + -+-=+|.+|.|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~-~-------~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES-L-------NYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC-C-------CCCEEEEEcccCC
Confidence 99999996421 1 122223322 33678899988543 333333333321 1 1124888999964
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
... -.+..++...+. ++.+++.
T Consensus 373 ~~~-----G~il~i~~~~~l-PI~ylt~ 394 (432)
T PRK12724 373 DFL-----GSFLELADTYSK-SFTYLSV 394 (432)
T ss_pred CCc-----cHHHHHHHHHCC-CEEEEec
Confidence 422 345666667774 6666654
No 430
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.21 E-value=0.044 Score=48.88 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|.+|||||||++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 431
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.02 E-value=0.17 Score=42.24 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=28.6
Q ss_pred cCcEEEEEEeCCC--cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 531 EAVGAFIVFDVTR--AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 531 ~ADgaILVyDVTd--~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
-.++++|++|++. +.+.+.=..++.+++.. ..+.|+|+|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~-----F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL-----FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH-----TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH-----cCCCCEEEEEeccC
Confidence 3689999999996 45566666777777764 24799999999998
No 432
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.90 E-value=0.33 Score=49.56 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy4094 461 ILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg 480 (663)
|+|+|.+|+||||++..+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999998864
No 433
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.89 E-value=0.27 Score=48.66 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEE--EEEeC-CCccchhhhHHHHHhcCcEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL--QLWDI-AGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkL--qIwDT-pGQErfrsl~~~~~r~ADgaI 536 (663)
.++|+|+.|+|||||++.+.+-... +-|. +.+++. .+.+ +-.+. .|+.+--.+...++.+.+++|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p-----~~G~------i~~~g~-~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP-----NGDN------DEWDGI-TPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC-----CCcE------EEECCE-EEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7999999999999999988774321 1120 111221 1111 11112 244444456666677776666
Q ss_pred E--EEeCCCcccHHHHHHHHHHHH
Q psy4094 537 I--VFDVTRAATFDAVLKWKQDLD 558 (663)
Q Consensus 537 L--VyDVTd~~SFe~L~~wieeL~ 558 (663)
+ -...-|..+-+.+..|+..+.
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHH
Confidence 5 122223444555556665554
No 434
>KOG4181|consensus
Probab=93.83 E-value=0.89 Score=50.23 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=48.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCcc-----------------ccceeeecee---EEEecCCceeEEE------EE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHY-----------------RATIGVDFAL---KVLSWDHETIIRL------QL 512 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~-----------------~~TigiDf~~---ktV~vdge~~vkL------qI 512 (663)
.-|.+||..|+|||+|++.+.++.....| ..|+++|++. ..+.++.+..+.+ .+
T Consensus 189 ~VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~qt~~Id~~i~q~~i~fldtqpl~sfsi~e~~i~ 268 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFAQTHKIDPNIGQKSILFLDTQPLQSFSIRERHIL 268 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccChHHhhHHHhcccCChhhhhhhccceeccccccccceEEeeccccccchHHHhhhhc
Confidence 35779999999999999988876543332 2345555543 2333343322222 23
Q ss_pred EeCCCcc------ch---h--hhHHHHHhcCcEEEEEEeCC
Q psy4094 513 WDIAGQE------RF---G--NMTRVYYKEAVGAFIVFDVT 542 (663)
Q Consensus 513 wDTpGQE------rf---r--sl~~~~~r~ADgaILVyDVT 542 (663)
.|++--. .+ . .++...+.-|+++|+|.|--
T Consensus 269 ~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~ 309 (491)
T KOG4181|consen 269 LDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGL 309 (491)
T ss_pred cCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecch
Confidence 3343211 11 1 23444567799999999854
No 435
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.83 E-value=0.17 Score=56.34 Aligned_cols=153 Identities=16% Similarity=0.253 Sum_probs=80.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCcccc---ceeeeceeE---------------EEe--cCC---------ceeEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRA---TIGVDFALK---------------VLS--WDH---------ETIIR 509 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~---TigiDf~~k---------------tV~--vdg---------e~~vk 509 (663)
-.|+|||+.||||||-+-.|........-.. -++.|.+.. .+. ... -..+.
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d 283 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD 283 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence 3799999999999998766653222111111 111121110 010 000 01367
Q ss_pred EEEEeCCCccchh----hhHHHHHhcC--cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCC
Q psy4094 510 LQLWDIAGQERFG----NMTRVYYKEA--VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPK 582 (663)
Q Consensus 510 LqIwDTpGQErfr----sl~~~~~r~A--DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~d 582 (663)
+.++||.|...++ ..+..|+..+ .-+.||++++- ..+.+...+..+.. +|+ =++.+|.|-..
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~---------~~i~~~I~TKlDET~ 352 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSL---------FPIDGLIFTKLDETT 352 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhcc---------CCcceeEEEcccccC
Confidence 9999999976443 3344444443 23446777763 34555555555542 222 37889999543
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH-----HHHHHHHHHhhh
Q psy4094 583 EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA-----AKTLVQKILEND 630 (663)
Q Consensus 583 er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL-----Fe~IIr~Ile~~ 630 (663)
..-.+..++...+. ++-+++ +|.+|-+= -.|+++.++.-.
T Consensus 353 -----s~G~~~s~~~e~~~-PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 353 -----SLGNLFSLMYETRL-PVSYVT--NGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred -----chhHHHHHHHHhCC-CeEEEe--CCCCCCchhhhcChHHHHHHHhccc
Confidence 23444555666664 444443 45554332 245666665543
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.81 E-value=0.052 Score=49.59 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.6
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy4094 461 ILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg 480 (663)
|+|+|.+|+|||||+.++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 437
>KOG1533|consensus
Probab=93.77 E-value=0.025 Score=59.12 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=37.8
Q ss_pred EEEEEEeCCCccchh----hhH--HHHHhcCcEEEEEEeCCC------cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094 508 IRLQLWDIAGQERFG----NMT--RVYYKEAVGAFIVFDVTR------AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575 (663)
Q Consensus 508 vkLqIwDTpGQErfr----sl~--~~~~r~ADgaILVyDVTd------~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG 575 (663)
-.+.++|+|||.++- .++ -.+++.-+.-+.++.+.| +..|-.. ++-.+...+. -..|-|=|.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL~sl~tMl~----melphVNvl 170 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LLVSLATMLH----MELPHVNVL 170 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HHHHHHHHHh----hcccchhhh
Confidence 468899999996531 222 223455665555555544 4444332 2222222211 237888899
Q ss_pred eCCCCC
Q psy4094 576 NKCDQP 581 (663)
Q Consensus 576 NKsDL~ 581 (663)
.|+|+.
T Consensus 171 SK~Dl~ 176 (290)
T KOG1533|consen 171 SKADLL 176 (290)
T ss_pred hHhHHH
Confidence 999974
No 438
>KOG1424|consensus
Probab=93.58 E-value=0.09 Score=59.93 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=41.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
.+.|.+||-++|||||+||.++|.+-. ....++.+-.|.+ +.+... +.+.|+||-.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT--i~ls~~----v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT--IFLSPS----VCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEE--EEcCCC----ceecCCCCcc
Confidence 689999999999999999999997643 3444555544444 444443 7899999954
No 439
>KOG0780|consensus
Probab=93.47 E-value=0.083 Score=58.62 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=48.3
Q ss_pred EEEEEeCCCCCHHHHHHHHH--------------hCCCCCcc-------ccceeeeceeEEEecC------------Cce
Q psy4094 460 KILVIGELGAGKTSIIKRYV--------------HQFFSPHY-------RATIGVDFALKVLSWD------------HET 506 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLl--------------g~~fsee~-------~~TigiDf~~ktV~vd------------ge~ 506 (663)
-|+++|-.|+||||.+..|. .+.|.... ..-.++.|+..-...+ .+.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke 182 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE 182 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc
Confidence 58999999999999988775 12221100 0011222222111110 012
Q ss_pred eEEEEEEeCCCccc-hhhhHHHH-----HhcCcEEEEEEeCCCccc
Q psy4094 507 IIRLQLWDIAGQER-FGNMTRVY-----YKEAVGAFIVFDVTRAAT 546 (663)
Q Consensus 507 ~vkLqIwDTpGQEr-frsl~~~~-----~r~ADgaILVyDVTd~~S 546 (663)
.+.+.|.||.|... ...+.... .-+.|-+|||.|.+-...
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 47899999999432 11221111 234789999999986654
No 440
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.45 E-value=0.086 Score=45.52 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS 484 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs 484 (663)
-.++|+|++|+|||+++..++.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 37999999999999999999875443
No 441
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.44 E-value=0.32 Score=44.26 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=18.8
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
++|+|.+|+|||+|+..++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 442
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=93.42 E-value=0.11 Score=50.88 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=28.0
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
|++++|+|+.++.+... ..+.+.+. + ...+.|+|+|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~--l---~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL--Q---AGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH--h---ccCCCCEEEEEehhhcCC
Confidence 78999999988643221 12222211 0 123489999999999954
No 443
>KOG1534|consensus
Probab=93.36 E-value=0.054 Score=56.03 Aligned_cols=112 Identities=12% Similarity=0.140 Sum_probs=58.7
Q ss_pred EEEEEeCCCccc-hh--hhHHHHHhc-----Cc-EEEEEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094 509 RLQLWDIAGQER-FG--NMTRVYYKE-----AV-GAFIVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578 (663)
Q Consensus 509 kLqIwDTpGQEr-fr--sl~~~~~r~-----AD-gaILVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs 578 (663)
.+.|+|+|||-+ |. ..+..+++. -. +++++.|..= -+++.-+...+..+...+ .-.+|.|=|..|.
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi----~lE~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI----SLEVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH----HhcCcchhhhhHH
Confidence 378999999864 32 222222221 11 2333433221 122223333333333222 1348999999999
Q ss_pred CCCCCCC----------------------------CCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094 579 DQPKEGI----------------------------ANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 579 DL~der~----------------------------~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr 624 (663)
||...+. .-....+.++...++.+.|++.-..+.+.|+-++..|-.
T Consensus 175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ 248 (273)
T KOG1534|consen 175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDD 248 (273)
T ss_pred HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHH
Confidence 9854320 000122344555567778888887777777777766644
No 444
>PRK08118 topology modulation protein; Reviewed
Probab=93.35 E-value=0.068 Score=51.97 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
+|+|+|.+|+|||||+..+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998875
No 445
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.31 E-value=0.12 Score=50.78 Aligned_cols=21 Identities=33% Similarity=0.751 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
+|+|-|.+|+|||||+.+++.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 446
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.16 Score=53.40 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-+.|||+.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999987
No 447
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.30 E-value=0.22 Score=47.57 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|.|+.|+|||||++.++..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 448
>PRK07261 topology modulation protein; Provisional
Probab=93.24 E-value=0.072 Score=51.83 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
+|+|+|.+|+|||||+..+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 449
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=93.09 E-value=0.26 Score=54.68 Aligned_cols=25 Identities=16% Similarity=0.547 Sum_probs=21.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
...+|+|+|..|+|||||++.|...
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4469999999999999999998853
No 450
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=92.93 E-value=0.83 Score=46.94 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=47.0
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPKEGIA 586 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~der~~ 586 (663)
+.+.|+|++|...... ....+..||.+|++...+ ..++..+...+..+..... ..++++ .+|.|++|.
T Consensus 116 yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~---~~~l~~~giV~Nr~~~------ 184 (267)
T cd02032 116 YDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAK---TYKVRLAGLIANRTDK------ 184 (267)
T ss_pred CCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhh---ccCCceEEEEEeCCCH------
Confidence 5688999977543221 122367799999988664 4555665555555543211 234554 478999883
Q ss_pred CCHHHHHHHHHHcC
Q psy4094 587 NNPAKIDEFIKEHN 600 (663)
Q Consensus 587 Vs~eei~qlak~~g 600 (663)
...+.++...++
T Consensus 185 --~~~i~~~~~~~~ 196 (267)
T cd02032 185 --TDLIDKFVEAVG 196 (267)
T ss_pred --HHHHHHHHHhCC
Confidence 123445555555
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.91 E-value=0.088 Score=47.96 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|..|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 7999999999999999888764
No 452
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.88 E-value=0.39 Score=45.34 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999988775
No 453
>KOG2485|consensus
Probab=92.83 E-value=0.17 Score=54.76 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=38.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC------CccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
..+.|+|+|-+|||||+|++.+...... ....++++.....+....+.- .+.+.||+|-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp---~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP---PVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC---ceEEecCCCc
Confidence 3489999999999999999987643222 233455554444432222222 3789999994
No 454
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.82 E-value=0.41 Score=51.62 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=58.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC---c-----------------
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG---Q----------------- 518 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG---Q----------------- 518 (663)
-+++|+|+.|.|||+++++|....... .... + + .+-+.+..++. .
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~-~------------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A-E------------RIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C-c------------cccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 379999999999999999999754321 1111 1 0 01122222221 1
Q ss_pred ----cchhhhHHHHHhcCcEEEEEEeCCC---cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094 519 ----ERFGNMTRVYYKEAVGAFIVFDVTR---AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578 (663)
Q Consensus 519 ----Erfrsl~~~~~r~ADgaILVyDVTd---~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs 578 (663)
..........++.+.+=++|+|=-. ..+...-...+..|+... +.-.+|||+||+.-
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~---NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG---NELQIPIVGVGTRE 190 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh---hccCCCeEEeccHH
Confidence 1112334456778888899997432 223334444555555432 34569999999863
No 455
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.74 E-value=0.068 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=17.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999754
No 456
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.73 E-value=0.33 Score=50.96 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=29.3
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCC-CcEEEEEeCCCC
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLLANKCDQ 580 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~-IPIILVGNKsDL 580 (663)
..+++|.+|+|+|.+- .++.......+ |... -+ .+|.+|.||.|-
T Consensus 152 ~~~~vD~vivVvDpS~-~sl~taeri~~-L~~e------lg~k~i~~V~NKv~e 197 (255)
T COG3640 152 TIEGVDLVIVVVDPSY-KSLRTAERIKE-LAEE------LGIKRIFVVLNKVDE 197 (255)
T ss_pred cccCCCEEEEEeCCcH-HHHHHHHHHHH-HHHH------hCCceEEEEEeeccc
Confidence 3467999999999874 44444433322 2221 22 688999999994
No 457
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.59 E-value=0.096 Score=51.91 Aligned_cols=22 Identities=36% Similarity=0.792 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
+|+|+|.+|+||||++.++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998865
No 458
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.57 E-value=0.15 Score=48.18 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|-|+-|+|||||++.|+..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998853
No 459
>PRK10646 ADP-binding protein; Provisional
Probab=92.53 E-value=0.47 Score=46.42 Aligned_cols=22 Identities=36% Similarity=0.732 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|++-|+-|+|||||++.++..
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998754
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.36 E-value=0.12 Score=45.82 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
|+|.|.+|||||||++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988754
No 461
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.36 E-value=0.11 Score=46.11 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
|+|.|++|+|||+|++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 789999999999999998764
No 462
>PRK08727 hypothetical protein; Validated
Probab=92.33 E-value=0.3 Score=49.89 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.6
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy4094 461 ILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg 480 (663)
|+|.|.+|+|||.|+..++.
T Consensus 44 l~l~G~~G~GKThL~~a~~~ 63 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCA 63 (233)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998865
No 463
>KOG1424|consensus
Probab=92.30 E-value=0.21 Score=57.10 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=55.2
Q ss_pred chhhhHHHHHhcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK 597 (663)
Q Consensus 520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak 597 (663)
.|+.+|+ .+...|++|.++|+-|+--|.. +..|..++. ....+||+.||.||...+ ......+++.
T Consensus 164 ~WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d--------~~K~~~LLvNKaDLl~~~---qr~aWa~YF~ 231 (562)
T KOG1424|consen 164 IWRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD--------PSKANVLLVNKADLLPPE---QRVAWAEYFR 231 (562)
T ss_pred HHHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc--------cccceEEEEehhhcCCHH---HHHHHHHHHH
Confidence 4577776 4678999999999999876653 445555444 336789999999997643 2233344555
Q ss_pred HcCCCeEEEEeCCC
Q psy4094 598 EHNFSGWFETSAKD 611 (663)
Q Consensus 598 ~~g~i~ffEtSAKt 611 (663)
..+ ++++.-||..
T Consensus 232 ~~n-i~~vf~SA~~ 244 (562)
T KOG1424|consen 232 QNN-IPVVFFSALA 244 (562)
T ss_pred hcC-ceEEEEeccc
Confidence 566 5788888876
No 464
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.25 E-value=0.66 Score=55.75 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFF 483 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~f 483 (663)
-++|.|..|+|||||++.|....+
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999998876443
No 465
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=92.18 E-value=0.43 Score=46.67 Aligned_cols=61 Identities=16% Similarity=0.308 Sum_probs=34.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
-|++-|+-|+|||||++-++..--........+... ...........+++.+|=....+++
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl-v~~Y~~~~~~lyH~DlYRl~d~ee~ 87 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL-VEEYEEGRLPLYHFDLYRLSDPEEL 87 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee-ehhhcCCCCcEEEEeeeccCChHHh
Confidence 588999999999999999885433222222222111 1111111222466777766655443
No 466
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.84 E-value=1.9 Score=42.99 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=48.9
Q ss_pred EEEEEEeCCCccchhhhH-HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMT-RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEGI 585 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~-~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der~ 585 (663)
+.+.|+|++|......+. ....+.||.+|+++..+ ..++..+...++.+..... ..++. ..+|.|+.+..
T Consensus 117 yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~---~~~~~~~gvv~N~~~~~---- 188 (212)
T cd02117 117 LDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAK---SGGVRLGGLICNSRNTD---- 188 (212)
T ss_pred CCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCc---ccCCcEEEEEEeCCCCc----
Confidence 678899997654322221 11124699999999764 4455444444444443211 11343 45999999853
Q ss_pred CCCHHHHHHHHHHcCC
Q psy4094 586 ANNPAKIDEFIKEHNF 601 (663)
Q Consensus 586 ~Vs~eei~qlak~~g~ 601 (663)
...+...+++..++.
T Consensus 189 -~~~~~~~~~~~~~~~ 203 (212)
T cd02117 189 -RETELIDAFAERLGT 203 (212)
T ss_pred -cHHHHHHHHHHHcCC
Confidence 233456777777774
No 467
>PRK06217 hypothetical protein; Validated
Probab=91.83 E-value=0.14 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.+|+|+|.+|+|||||..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 468
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.80 E-value=0.52 Score=44.44 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988775
No 469
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.73 E-value=0.16 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998875
No 470
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=91.72 E-value=1.1 Score=48.00 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=49.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc--CcEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE--AVGAFI 537 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~--ADgaIL 537 (663)
.|+|.|.+|+||||+++.+....+ .++|......+..+....... .+.+.+
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~g~---------------------------~~~d~~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDLGY---------------------------YCVDNLPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHcCC---------------------------eEECCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence 689999999999999998842111 111222222233333333332 356778
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
+.|+.+...+.....++..++. .+..+.+|.-.++
T Consensus 61 ~iD~r~~~~~~~~~~~~~~L~~-------~g~~~~iI~L~a~ 95 (288)
T PRK05416 61 VIDVRSRPFFDDLPEALDELRE-------RGIDVRVLFLDAS 95 (288)
T ss_pred EEccCchhhHHHHHHHHHHHHH-------cCCcEEEEEEECC
Confidence 8888876545566666666663 1344444555555
No 471
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.63 E-value=0.71 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEeCCCCCHHHHHHHHHhCC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~ 482 (663)
|+|+|+.|+||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999887643
No 472
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.61 E-value=0.43 Score=49.07 Aligned_cols=85 Identities=13% Similarity=0.239 Sum_probs=46.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
-.|+|.|..|+||||+++.++...... ....+.++ ....+.+++...+.+..- .+...|.......++..--+|++
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iE-d~~E~~l~~~~~~~~~~~--~~~~~~~~~l~~~LR~~pD~iii 203 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIE-DPPELRLPGPNQIQIQTR--RDEISYEDLLKSALRQDPDVIII 203 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEE-SSS-S--SCSSEEEEEEE--TTTBSHHHHHHHHTTS--SEEEE
T ss_pred eEEEEECCCccccchHHHHHhhhcccc-ccceEEec-cccceeecccceEEEEee--cCcccHHHHHHHHhcCCCCcccc
Confidence 589999999999999999998643333 12222221 111222232212222222 45556777777777755456666
Q ss_pred EeCCCcccH
Q psy4094 539 FDVTRAATF 547 (663)
Q Consensus 539 yDVTd~~SF 547 (663)
-.+.+.+.+
T Consensus 204 gEiR~~e~~ 212 (270)
T PF00437_consen 204 GEIRDPEAA 212 (270)
T ss_dssp SCE-SCHHH
T ss_pred cccCCHhHH
Confidence 666665544
No 473
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.38 E-value=0.79 Score=50.11 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=47.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEE-EeCCC--ccchhhhHHHHHhcCcEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL-WDIAG--QERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqI-wDTpG--QErfrsl~~~~~r~ADga 535 (663)
.+|+|.|..|+|||||++.+++........-++. |.. .+.+.....+.+.+ .+-.| ...+..+....++.---.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiE-d~~--El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIE-DTL--ELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEEC-CCc--cccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 5899999999999999999986543322222211 111 11122211222221 11111 223456667777766666
Q ss_pred EEEEeCCCcccHH
Q psy4094 536 FIVFDVTRAATFD 548 (663)
Q Consensus 536 ILVyDVTd~~SFe 548 (663)
|+|--+.+.+.+.
T Consensus 240 IivGEiR~~ea~~ 252 (344)
T PRK13851 240 ILLGEMRDDAAWA 252 (344)
T ss_pred EEEEeeCcHHHHH
Confidence 7777777665443
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.31 E-value=0.17 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|+|.+|+|||||++++...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 475
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=91.30 E-value=2.2 Score=40.78 Aligned_cols=85 Identities=15% Similarity=0.045 Sum_probs=53.6
Q ss_pred eEEEEEEeCCCccchhhhHHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCC
Q psy4094 507 IIRLQLWDIAGQERFGNMTRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLANKCDQPKE 583 (663)
Q Consensus 507 ~vkLqIwDTpGQErfrsl~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGNKsDL~de 583 (663)
.+.+.|+|+++... ......+ ..+|.+|+|...+ ..++..+..++..+.+. +.++ .+|.|+.+....
T Consensus 67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~-------~~~~~gvv~N~~~~~~~ 136 (169)
T cd02037 67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV-------NIPILGVVENMSYFVCP 136 (169)
T ss_pred CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc-------CCCeEEEEEcCCcccCC
Confidence 36789999998632 2222233 5789999998665 56777777888777742 2444 588999985311
Q ss_pred ----CCCC-CHHHHHHHHHHcCC
Q psy4094 584 ----GIAN-NPAKIDEFIKEHNF 601 (663)
Q Consensus 584 ----r~~V-s~eei~qlak~~g~ 601 (663)
+... .....+.++..++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 137 HCGKKIYIFGKGGGEKLAEELGV 159 (169)
T ss_pred CCCCcccccCCccHHHHHHHcCC
Confidence 1111 22456677777664
No 476
>PLN03025 replication factor C subunit; Provisional
Probab=91.23 E-value=1.1 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
.+++.|++|+||||++..+...-
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999887643
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.21 E-value=0.8 Score=47.95 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=49.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
-|+|.|..|+||||+++.++...... ....+.++- ...+.+.+. ..+.+.. .....|.......++.---+|++-
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~-~~~iitiEd-p~E~~~~~~--~q~~v~~-~~~~~~~~~l~~~lR~~PD~i~vg 156 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTP-EKNIITVED-PVEYQIPGI--NQVQVNE-KAGLTFARGLRAILRQDPDIIMVG 156 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECC-CceecCCCc--eEEEeCC-cCCcCHHHHHHHHhccCCCEEEec
Confidence 58999999999999999887654321 111111110 111222221 2233222 122356777777888666777888
Q ss_pred eCCCcccHHHH
Q psy4094 540 DVTRAATFDAV 550 (663)
Q Consensus 540 DVTd~~SFe~L 550 (663)
.+.+.+++..+
T Consensus 157 EiR~~e~a~~~ 167 (264)
T cd01129 157 EIRDAETAEIA 167 (264)
T ss_pred cCCCHHHHHHH
Confidence 88887765543
No 478
>PRK01889 GTPase RsgA; Reviewed
Probab=91.21 E-value=0.21 Score=54.51 Aligned_cols=22 Identities=18% Similarity=0.591 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
+++|+|.+|+|||||++.+++.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 7999999999999999999874
No 479
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.20 E-value=0.96 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=19.6
Q ss_pred EEEEeCCCCCHHHHHHHHHhCCC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQFF 483 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~~f 483 (663)
++|.|..|+||||+++.|....+
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999998876443
No 480
>PRK03839 putative kinase; Provisional
Probab=91.17 E-value=0.18 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
+|+|+|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988753
No 481
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.13 E-value=0.85 Score=49.53 Aligned_cols=87 Identities=21% Similarity=0.202 Sum_probs=47.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc----cchhhhHHHHHhcCc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----ERFGNMTRVYYKEAV 533 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----Erfrsl~~~~~r~AD 533 (663)
..+|+|.|..|+|||||++.++.........-++. |.....+....+ .+.+ +++-.++ ..+..+....++.--
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiE-d~~El~l~~~~n-~~~~-~~~~~~~~~~~~~~~~ll~~~LR~~P 236 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVE-DAREIVLSNHPN-RVHL-LASKGGQGRAKVTTQDLIEACLRLRP 236 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEec-CCCccccccCCC-EEEE-EecCCCCCcCcCcHHHHHHHHhccCC
Confidence 35899999999999999999886543333222222 111111111111 2222 2332222 235566777777655
Q ss_pred EEEEEEeCCCcccH
Q psy4094 534 GAFIVFDVTRAATF 547 (663)
Q Consensus 534 gaILVyDVTd~~SF 547 (663)
-.|++--+-+.+.+
T Consensus 237 D~IivGEiR~~ea~ 250 (332)
T PRK13900 237 DRIIVGELRGAEAF 250 (332)
T ss_pred CeEEEEecCCHHHH
Confidence 56667777665433
No 482
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.11 E-value=0.18 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|+|.+|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998664
No 483
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.01 E-value=0.17 Score=47.81 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=16.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|.|.+|+|||+|+++++.
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 484
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.00 E-value=0.21 Score=41.96 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-.+|.|+.|+|||||+..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998764
No 485
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.00 E-value=0.21 Score=41.58 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
|+|.|.+|+||||+++.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 486
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.00 E-value=6.2 Score=46.61 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=18.3
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy4094 461 ILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg 480 (663)
|+|.|..|+|||.|++.+..
T Consensus 317 L~LyG~sGsGKTHLL~AIa~ 336 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGH 336 (617)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88899999999999998875
No 487
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.99 E-value=0.57 Score=51.18 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=76.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh--------------CCCCC---ccccceeeeceeEEEec-CCc--------------
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH--------------QFFSP---HYRATIGVDFALKVLSW-DHE-------------- 505 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg--------------~~fse---e~~~TigiDf~~ktV~v-dge-------------- 505 (663)
.+-|+|+|-.|+||||-+-.+.. +.|.. +.-..++-......|.. .|.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak 218 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK 218 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence 47899999999999998876641 22210 00011111111222221 111
Q ss_pred -eeEEEEEEeCCCccch-hhh---H---HHHHhcCcE-----EEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcE
Q psy4094 506 -TIIRLQLWDIAGQERF-GNM---T---RVYYKEAVG-----AFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPC 571 (663)
Q Consensus 506 -~~vkLqIwDTpGQErf-rsl---~---~~~~r~ADg-----aILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPI 571 (663)
..+.+.|+||+|.-.- ..+ . .+.+...+. ++++.|.+-+ +++..++.+.+.+. + -
T Consensus 219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~----------l-~ 287 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG----------L-D 287 (340)
T ss_pred HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC----------C-c
Confidence 1267999999994211 111 1 122333333 7888899875 45666555443332 1 1
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094 572 VLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619 (663)
Q Consensus 572 ILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF 619 (663)
-+|.+|.|-...- .+ +..++..++. |++++- -|+++++|-
T Consensus 288 GiIlTKlDgtAKG-G~----il~I~~~l~~-PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 288 GIILTKLDGTAKG-GI----ILSIAYELGI-PIKFIG--VGEGYDDLR 327 (340)
T ss_pred eEEEEecccCCCc-ce----eeeHHHHhCC-CEEEEe--CCCChhhcc
Confidence 4788999953322 22 3346667774 666654 366666653
No 488
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=90.95 E-value=0.49 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
=|+|+|++||||+||+.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999876
No 489
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.91 E-value=0.2 Score=44.92 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|.|.+|+|||+++++|+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 490
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.87 E-value=0.2 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 7899999999999999998874
No 491
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.79 E-value=0.19 Score=47.97 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+||||+++.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999873
No 492
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.75 E-value=0.2 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|+|.+|+|||||++.++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999863
No 493
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=90.72 E-value=0.92 Score=49.04 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=46.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCC---CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~f---see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
.+|+|+|..|+|||||++.++.... .....-++. +.. .+.+..... +++ .+.....+..+....++.---.
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIE-d~~--El~~~~~~~--v~~-~~~~~~~~~~ll~~aLR~~PD~ 222 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIE-DTG--EIQCAAENY--VQY-HTSIDVNMTALLKTTLRMRPDR 222 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEc-CCC--ccccCCCCE--EEE-ecCCCCCHHHHHHHHhcCCCCE
Confidence 5899999999999999999986431 111111111 111 111111101 222 2233345667777788776667
Q ss_pred EEEEeCCCccc
Q psy4094 536 FIVFDVTRAAT 546 (663)
Q Consensus 536 ILVyDVTd~~S 546 (663)
|+|--+-+.+.
T Consensus 223 IivGEiR~~Ea 233 (319)
T PRK13894 223 ILVGEVRGPEA 233 (319)
T ss_pred EEEeccCCHHH
Confidence 77777776543
No 494
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=90.67 E-value=1.5 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|-|++|+||||.++.+...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4677899999999999888753
No 495
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=90.63 E-value=3.9 Score=41.16 Aligned_cols=136 Identities=14% Similarity=0.095 Sum_probs=83.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
...|++||..+.++-.|...++...- ++..+... ... +-+..... .+ =...|.|+|
T Consensus 15 ~atiLLVg~e~~~~~~LA~a~l~~~~----------~~~l~Vh~-a~s------LPLp~e~~---~l----RprIDlIVF 70 (176)
T PF11111_consen 15 TATILLVGTEEALLQQLAEAMLEEDK----------EFKLKVHL-AKS------LPLPSENN---NL----RPRIDLIVF 70 (176)
T ss_pred eeEEEEecccHHHHHHHHHHHHhhcc----------ceeEEEEE-ecc------CCCccccc---CC----CceeEEEEE
Confidence 57999999999999999999986311 01111111 100 00000001 01 124899999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
++|+....|++.++.-+..+... ..-+. ++++++-..... .+.+...++.+++..|.+ +++.+--....+...
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~----fflGK-VCfl~t~a~~~~-~~sv~~~~V~kla~~y~~-plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPS----FFLGK-VCFLATNAGRES-HCSVHPNEVRKLAATYNS-PLLFADLENEEGRTS 143 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChh----hhccc-eEEEEcCCCccc-ccccCHHHHHHHHHHhCC-CEEEeecccchHHHH
Confidence 99999999999988666554421 22234 445555544333 236888999999999996 788887766655555
Q ss_pred HHHHHHH
Q psy4094 618 AAKTLVQ 624 (663)
Q Consensus 618 LFe~IIr 624 (663)
+-+.|++
T Consensus 144 lAqRLL~ 150 (176)
T PF11111_consen 144 LAQRLLR 150 (176)
T ss_pred HHHHHHH
Confidence 4444444
No 496
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.54 E-value=0.2 Score=52.63 Aligned_cols=21 Identities=19% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
=|+|||++|||||||++-+.|
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999988775
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.48 E-value=0.22 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988874
No 498
>KOG3929|consensus
Probab=90.43 E-value=0.065 Score=56.83 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=49.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc----C
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE----A 532 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~----A 532 (663)
..+-|++.|..++ |++|+++....- ....++...+|..-...-.++..-..++|..+|-.....+...-++. .
T Consensus 44 ~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 44 FEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred ceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 4578888888766 888888765321 23345555555322222222112237899999866544333322221 2
Q ss_pred cEEEEEEeCCCccc
Q psy4094 533 VGAFIVFDVTRAAT 546 (663)
Q Consensus 533 DgaILVyDVTd~~S 546 (663)
=.+||+.|+++++.
T Consensus 121 ~slIL~LDls~p~~ 134 (363)
T KOG3929|consen 121 FSLILVLDLSKPND 134 (363)
T ss_pred hhheeeeecCChHH
Confidence 35688999998754
No 499
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.41 E-value=0.23 Score=48.93 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988874
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.39 E-value=1.2 Score=43.67 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-.|+|+|..|+|||||++.+++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999988864
Done!