Query psy4094
Match_columns 663
No_of_seqs 242 out of 1589
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 16:44:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.3E-38 4.5E-43 313.8 19.2 198 456-663 11-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 8.4E-32 2.9E-36 254.9 21.4 172 455-633 5-176 (206)
3 1vg8_A RAS-related protein RAB 100.0 5.9E-32 2E-36 254.4 18.4 176 455-633 5-180 (207)
4 2bov_A RAla, RAS-related prote 100.0 1.5E-30 5.2E-35 244.0 22.0 170 456-632 12-181 (206)
5 1ky3_A GTP-binding protein YPT 100.0 2.3E-30 7.9E-35 236.6 19.0 176 455-630 5-180 (182)
6 2hup_A RAS-related protein RAB 100.0 6.4E-30 2.2E-34 243.6 21.2 172 454-631 25-196 (201)
7 2fu5_C RAS-related protein RAB 100.0 2E-30 6.7E-35 239.6 16.5 172 454-632 4-175 (183)
8 3tkl_A RAS-related protein RAB 100.0 2.2E-29 7.6E-34 234.4 23.0 173 453-632 11-183 (196)
9 1z0f_A RAB14, member RAS oncog 100.0 2.2E-29 7.5E-34 229.5 21.1 167 455-628 12-178 (179)
10 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.1E-29 1E-33 229.3 21.9 172 455-629 4-175 (177)
11 3tw8_B RAS-related protein RAB 100.0 1.2E-29 4E-34 231.7 19.0 172 453-632 4-175 (181)
12 3kkq_A RAS-related protein M-R 100.0 4.1E-29 1.4E-33 230.8 22.6 169 454-629 14-183 (183)
13 2oil_A CATX-8, RAS-related pro 100.0 2.5E-29 8.6E-34 235.1 21.2 172 453-631 20-191 (193)
14 2bme_A RAB4A, RAS-related prot 100.0 2E-29 7E-34 232.8 20.3 172 453-631 5-176 (186)
15 2a5j_A RAS-related protein RAB 100.0 2.9E-29 9.9E-34 235.4 21.4 171 454-631 17-187 (191)
16 3cpj_B GTP-binding protein YPT 100.0 7.1E-30 2.4E-34 246.5 17.6 173 455-634 10-182 (223)
17 2hxs_A RAB-26, RAS-related pro 100.0 6E-30 2E-34 234.2 16.1 171 456-630 4-175 (178)
18 1r2q_A RAS-related protein RAB 100.0 3E-29 1E-33 226.2 19.5 165 456-627 4-168 (170)
19 1z08_A RAS-related protein RAB 100.0 1.7E-29 5.9E-34 229.0 18.0 167 455-628 3-169 (170)
20 2efe_B Small GTP-binding prote 100.0 5.4E-29 1.9E-33 228.4 21.3 168 455-629 9-176 (181)
21 2fn4_A P23, RAS-related protei 100.0 7.3E-29 2.5E-33 226.5 21.6 170 455-631 6-175 (181)
22 2ew1_A RAS-related protein RAB 100.0 2.5E-29 8.7E-34 241.7 19.4 171 454-631 22-192 (201)
23 2il1_A RAB12; G-protein, GDP, 100.0 2.7E-29 9.1E-34 236.8 19.1 170 454-629 22-191 (192)
24 3dz8_A RAS-related protein RAB 100.0 9.7E-30 3.3E-34 238.6 16.0 172 453-631 18-189 (191)
25 2nzj_A GTP-binding protein REM 100.0 5.6E-29 1.9E-33 226.6 20.5 168 457-631 3-172 (175)
26 1z2a_A RAS-related protein RAB 100.0 3.2E-29 1.1E-33 226.2 18.6 165 456-628 3-167 (168)
27 3t5g_A GTP-binding protein RHE 100.0 3.2E-29 1.1E-33 231.1 18.8 169 457-632 5-173 (181)
28 3cbq_A GTP-binding protein REM 100.0 3.3E-29 1.1E-33 238.5 19.5 171 454-630 19-190 (195)
29 1zbd_A Rabphilin-3A; G protein 100.0 8.7E-29 3E-33 233.2 22.1 172 455-633 5-176 (203)
30 1g16_A RAS-related protein SEC 100.0 6.2E-29 2.1E-33 224.7 20.3 165 457-629 2-166 (170)
31 4dsu_A GTPase KRAS, isoform 2B 100.0 1.4E-28 4.8E-33 226.6 22.6 169 457-633 3-171 (189)
32 1z0j_A RAB-22, RAS-related pro 100.0 9.4E-29 3.2E-33 223.6 20.8 165 456-627 4-168 (170)
33 1x3s_A RAS-related protein RAB 100.0 1.3E-28 4.3E-33 228.6 22.0 171 454-631 11-181 (195)
34 3q85_A GTP-binding protein REM 100.0 4.4E-29 1.5E-33 226.6 18.5 166 458-629 2-168 (169)
35 3ihw_A Centg3; RAS, centaurin, 100.0 1.1E-28 3.7E-33 232.5 21.9 165 456-631 18-183 (184)
36 2g6b_A RAS-related protein RAB 100.0 8E-29 2.7E-33 227.1 20.3 169 455-630 7-176 (180)
37 1ek0_A Protein (GTP-binding pr 100.0 6.4E-29 2.2E-33 224.1 19.2 164 458-627 3-168 (170)
38 2gf9_A RAS-related protein RAB 100.0 8.8E-29 3E-33 231.2 20.6 168 455-629 19-186 (189)
39 2iwr_A Centaurin gamma 1; ANK 100.0 1.6E-28 5.4E-33 225.8 21.7 167 457-633 6-174 (178)
40 1c1y_A RAS-related protein RAP 100.0 1.6E-28 5.5E-33 221.4 20.9 164 458-627 3-166 (167)
41 3q3j_B RHO-related GTP-binding 100.0 4.1E-29 1.4E-33 241.2 18.2 171 455-632 24-207 (214)
42 3bc1_A RAS-related protein RAB 100.0 1.4E-28 4.7E-33 226.6 20.8 174 454-632 7-189 (195)
43 3reg_A RHO-like small GTPase; 100.0 8.4E-29 2.9E-33 232.2 19.6 171 454-631 19-191 (194)
44 2a9k_A RAS-related protein RAL 100.0 2.2E-28 7.5E-33 224.4 21.3 169 456-631 16-184 (187)
45 3clv_A RAB5 protein, putative; 100.0 4E-28 1.4E-32 223.9 23.0 164 456-629 5-205 (208)
46 2o52_A RAS-related protein RAB 100.0 8E-29 2.7E-33 235.4 18.7 172 454-632 21-192 (200)
47 2fg5_A RAB-22B, RAS-related pr 100.0 1.3E-28 4.3E-33 231.7 19.7 169 453-628 18-186 (192)
48 2y8e_A RAB-protein 6, GH09086P 100.0 1E-28 3.5E-33 225.1 18.3 165 457-628 13-177 (179)
49 2q3h_A RAS homolog gene family 100.0 1.1E-28 3.6E-33 232.3 18.5 171 455-632 17-199 (201)
50 1u8z_A RAS-related protein RAL 100.0 3.5E-28 1.2E-32 218.3 20.9 164 458-628 4-167 (168)
51 3q72_A GTP-binding protein RAD 100.0 1.9E-28 6.5E-33 221.9 19.2 164 458-629 2-165 (166)
52 2gf0_A GTP-binding protein DI- 100.0 1.2E-28 4E-33 230.0 18.3 167 457-630 7-173 (199)
53 2atx_A Small GTP binding prote 100.0 2.6E-28 8.9E-33 228.4 20.6 166 456-628 16-193 (194)
54 2p5s_A RAS and EF-hand domain 100.0 1.7E-28 5.7E-33 232.1 19.2 167 456-628 26-197 (199)
55 1z06_A RAS-related protein RAB 100.0 2.1E-28 7.1E-33 228.7 19.5 167 456-628 18-188 (189)
56 2j0v_A RAC-like GTP-binding pr 100.0 7.1E-29 2.4E-33 235.8 16.3 169 457-632 8-184 (212)
57 1m7b_A RND3/RHOE small GTP-bin 100.0 1.4E-28 4.7E-33 229.5 17.8 166 456-628 5-183 (184)
58 3c5c_A RAS-like protein 12; GD 100.0 1.8E-28 6.2E-33 230.6 18.8 167 456-628 19-186 (187)
59 2f7s_A C25KG, RAS-related prot 100.0 1.9E-28 6.6E-33 233.6 18.7 174 454-632 21-203 (217)
60 3t1o_A Gliding protein MGLA; G 100.0 1.1E-28 3.7E-33 228.4 16.4 167 455-631 11-195 (198)
61 3cph_A RAS-related protein SEC 100.0 5.3E-28 1.8E-32 228.4 21.1 170 455-632 17-186 (213)
62 1kao_A RAP2A; GTP-binding prot 100.0 4E-28 1.4E-32 217.7 19.0 164 458-628 3-166 (167)
63 1gwn_A RHO-related GTP-binding 100.0 2.5E-28 8.6E-33 235.0 17.9 168 454-628 24-204 (205)
64 2g3y_A GTP-binding protein GEM 100.0 3.3E-28 1.1E-32 238.4 18.1 168 455-629 34-204 (211)
65 3oes_A GTPase rhebl1; small GT 100.0 2.3E-28 8E-33 231.4 16.5 169 456-631 22-190 (201)
66 1mh1_A RAC1; GTP-binding, GTPa 100.0 6.3E-28 2.2E-32 221.7 17.4 166 457-629 4-181 (186)
67 2cjw_A GTP-binding protein GEM 100.0 1.2E-27 4.1E-32 227.2 19.3 167 457-630 5-174 (192)
68 2atv_A RERG, RAS-like estrogen 100.0 1.9E-27 6.4E-32 223.9 20.4 167 457-631 27-194 (196)
69 2yc2_C IFT27, small RAB-relate 100.0 2.7E-28 9.2E-33 228.5 14.1 173 456-631 18-195 (208)
70 3bwd_D RAC-like GTP-binding pr 100.0 1.7E-28 5.8E-33 225.3 12.1 164 457-627 7-180 (182)
71 2erx_A GTP-binding protein DI- 100.0 1.4E-27 4.7E-32 215.7 17.4 165 458-628 3-167 (172)
72 2gco_A H9, RHO-related GTP-bin 100.0 3.5E-27 1.2E-31 223.8 20.9 165 457-628 24-200 (201)
73 2ce2_X GTPase HRAS; signaling 100.0 1.2E-26 4.2E-31 207.2 22.7 163 458-628 3-165 (166)
74 2j1l_A RHO-related GTP-binding 100.0 1.9E-27 6.6E-32 228.6 18.5 167 457-630 33-211 (214)
75 4djt_A GTP-binding nuclear pro 100.0 1.8E-27 6.3E-32 227.0 17.2 173 455-633 8-180 (218)
76 3l0i_B RAS-related protein RAB 99.9 2.7E-29 9.3E-34 237.5 2.7 169 454-629 29-197 (199)
77 2fv8_A H6, RHO-related GTP-bin 99.9 6.9E-27 2.4E-31 222.8 18.9 166 457-629 24-201 (207)
78 4gzl_A RAS-related C3 botulinu 99.9 2.6E-27 8.8E-32 226.1 15.4 163 457-626 29-203 (204)
79 4bas_A ADP-ribosylation factor 99.9 1.3E-26 4.3E-31 216.3 19.4 169 454-631 13-192 (199)
80 3gj0_A GTP-binding nuclear pro 99.9 1.3E-27 4.3E-32 229.6 12.8 168 455-632 12-179 (221)
81 3con_A GTPase NRAS; structural 99.9 2.8E-26 9.5E-31 213.5 21.2 167 457-631 20-186 (190)
82 1r8s_A ADP-ribosylation factor 99.9 4.3E-26 1.5E-30 206.0 18.4 158 459-629 1-163 (164)
83 2f9l_A RAB11B, member RAS onco 99.9 1.9E-25 6.5E-30 211.6 21.0 169 456-631 3-171 (199)
84 1fzq_A ADP-ribosylation factor 99.9 6.6E-26 2.3E-30 212.1 17.3 161 456-629 14-179 (181)
85 1zd9_A ADP-ribosylation factor 99.9 9.5E-26 3.3E-30 211.4 18.0 163 456-629 20-186 (188)
86 2zej_A Dardarin, leucine-rich 99.9 7.5E-27 2.6E-31 218.6 9.9 168 458-631 2-181 (184)
87 1zj6_A ADP-ribosylation factor 99.9 2.1E-25 7.2E-30 208.0 19.6 160 457-629 15-179 (187)
88 1upt_A ARL1, ADP-ribosylation 99.9 2.8E-25 9.6E-30 201.5 19.4 160 457-629 6-170 (171)
89 1f6b_A SAR1; gtpases, N-termin 99.9 5.5E-26 1.9E-30 216.4 15.4 157 458-626 25-197 (198)
90 2h57_A ADP-ribosylation factor 99.9 1.4E-25 4.7E-30 209.7 17.3 164 456-628 19-187 (190)
91 1ksh_A ARF-like protein 2; sma 99.9 1.9E-25 6.5E-30 207.2 18.0 161 456-629 16-181 (186)
92 1m2o_B GTP-binding protein SAR 99.9 1.6E-25 5.4E-30 211.5 16.8 157 457-625 22-189 (190)
93 2h17_A ADP-ribosylation factor 99.9 1.4E-25 4.6E-30 208.7 15.6 157 456-625 19-180 (181)
94 3llu_A RAS-related GTP-binding 99.9 7.5E-26 2.6E-30 213.8 13.5 163 454-626 16-195 (196)
95 1moz_A ARL1, ADP-ribosylation 99.9 1.5E-25 5.2E-30 206.3 14.6 162 456-629 16-181 (183)
96 2b6h_A ADP-ribosylation factor 99.9 4.3E-25 1.5E-29 208.9 17.7 159 457-628 28-191 (192)
97 2wkq_A NPH1-1, RAS-related C3 99.9 4.7E-25 1.6E-29 222.2 18.3 165 457-628 154-330 (332)
98 1oix_A RAS-related protein RAB 99.9 1.3E-24 4.4E-29 205.8 19.6 165 455-626 26-190 (191)
99 3th5_A RAS-related C3 botulinu 99.9 2.5E-27 8.5E-32 224.4 0.0 164 457-627 29-204 (204)
100 2x77_A ADP-ribosylation factor 99.9 8.8E-25 3E-29 203.7 15.3 160 457-629 21-185 (189)
101 2fh5_B SR-beta, signal recogni 99.9 2.9E-24 9.8E-29 204.4 15.8 164 457-625 6-213 (214)
102 2lkc_A Translation initiation 99.9 2E-24 7E-29 197.5 13.8 160 457-631 7-174 (178)
103 2wji_A Ferrous iron transport 99.9 3.2E-24 1.1E-28 197.5 15.2 153 458-626 3-163 (165)
104 3c5h_A Glucocorticoid receptor 99.9 3.8E-25 1.3E-29 220.9 7.9 166 455-627 16-254 (255)
105 2cxx_A Probable GTP-binding pr 99.9 6.8E-24 2.3E-28 195.9 12.3 159 459-631 2-187 (190)
106 2qu8_A Putative nucleolar GTP- 99.9 6.1E-23 2.1E-27 199.1 18.8 166 456-631 27-208 (228)
107 2wjg_A FEOB, ferrous iron tran 99.9 2E-23 6.7E-28 193.5 14.3 158 457-630 6-171 (188)
108 3o47_A ADP-ribosylation factor 99.9 6.2E-23 2.1E-27 213.4 17.2 161 457-629 164-328 (329)
109 1svi_A GTP-binding protein YSX 99.9 7.1E-23 2.4E-27 190.8 15.2 158 457-627 22-194 (195)
110 2dyk_A GTP-binding protein; GT 99.9 5.4E-23 1.8E-27 184.7 13.8 151 459-626 2-160 (161)
111 3r7w_A Gtpase1, GTP-binding pr 99.9 3.1E-23 1E-27 213.2 13.9 165 458-630 3-183 (307)
112 3r7w_B Gtpase2, GTP-binding pr 99.9 5.4E-24 1.8E-28 224.3 7.0 161 460-634 1-180 (331)
113 3pqc_A Probable GTP-binding pr 99.9 1.5E-22 5.3E-27 187.1 15.3 158 456-628 21-194 (195)
114 3lvq_E ARF-GAP with SH3 domain 99.9 2.5E-22 8.6E-27 217.4 16.0 163 456-630 320-486 (497)
115 2gj8_A MNME, tRNA modification 99.9 2.9E-22 9.9E-27 186.7 13.0 153 458-627 4-165 (172)
116 3dpu_A RAB family protein; roc 99.9 9E-22 3.1E-26 216.3 12.6 166 456-631 39-211 (535)
117 1nrj_B SR-beta, signal recogni 99.8 9.4E-22 3.2E-26 187.5 7.5 147 456-614 10-170 (218)
118 3a1s_A Iron(II) transport prot 99.8 6.3E-21 2.2E-25 192.0 13.8 155 457-627 4-166 (258)
119 4dhe_A Probable GTP-binding pr 99.8 5.6E-21 1.9E-25 182.4 12.1 163 457-629 28-212 (223)
120 3iev_A GTP-binding protein ERA 99.8 5.1E-20 1.7E-24 189.6 18.4 163 457-629 9-183 (308)
121 3b1v_A Ferrous iron uptake tra 99.8 1.3E-20 4.5E-25 191.9 13.6 152 458-626 3-162 (272)
122 3i8s_A Ferrous iron transport 99.8 7.2E-21 2.5E-25 192.7 9.7 155 458-628 3-169 (274)
123 3iby_A Ferrous iron transport 99.8 5.9E-21 2E-25 192.2 8.8 151 459-625 2-164 (256)
124 2hjg_A GTP-binding protein ENG 99.8 3.2E-20 1.1E-24 199.4 14.0 162 457-630 174-351 (436)
125 3k53_A Ferrous iron transport 99.8 4.6E-20 1.6E-24 185.2 13.5 157 458-629 3-167 (271)
126 4dcu_A GTP-binding protein ENG 99.8 1.6E-19 5.6E-24 194.9 15.5 163 457-631 194-372 (456)
127 3ohm_A Guanine nucleotide-bind 99.8 1E-19 3.5E-24 191.2 9.5 119 508-630 167-320 (327)
128 1mky_A Probable GTP-binding pr 99.8 5.3E-19 1.8E-23 190.1 15.1 152 460-629 3-167 (439)
129 1wf3_A GTP-binding protein; GT 99.8 7E-19 2.4E-23 181.4 14.1 158 457-629 6-174 (301)
130 3cb4_D GTP-binding protein LEP 99.8 1.3E-18 4.5E-23 195.6 16.9 161 457-628 3-182 (599)
131 3gee_A MNME, tRNA modification 99.8 6.5E-19 2.2E-23 193.0 13.7 156 458-627 233-397 (476)
132 1cip_A Protein (guanine nucleo 99.8 3E-19 1E-23 189.0 10.4 120 508-630 193-346 (353)
133 2ywe_A GTP-binding protein LEP 99.8 2.7E-18 9.1E-23 193.2 18.6 162 456-628 4-184 (600)
134 2e87_A Hypothetical protein PH 99.8 2.8E-18 9.5E-23 179.6 17.3 161 458-630 167-338 (357)
135 2xtz_A Guanine nucleotide-bind 99.8 1.5E-19 5.2E-24 191.4 7.7 121 507-630 182-347 (354)
136 1lnz_A SPO0B-associated GTP-bi 99.8 5.2E-19 1.8E-23 186.3 10.3 162 459-629 159-331 (342)
137 3qq5_A Small GTP-binding prote 99.8 2.3E-19 8E-24 194.1 6.9 158 456-629 32-197 (423)
138 2ged_A SR-beta, signal recogni 99.8 1.1E-18 3.6E-23 162.7 10.0 118 457-584 47-172 (193)
139 1jny_A EF-1-alpha, elongation 99.8 9.8E-20 3.3E-24 196.0 3.1 160 457-620 5-205 (435)
140 3j2k_7 ERF3, eukaryotic polype 99.8 4.2E-18 1.5E-22 184.0 15.7 158 456-620 15-217 (439)
141 2hjg_A GTP-binding protein ENG 99.8 8.3E-19 2.8E-23 188.4 9.6 153 459-628 4-165 (436)
142 3sjy_A Translation initiation 99.8 8.5E-18 2.9E-22 178.9 16.4 167 456-628 6-192 (403)
143 1wb1_A Translation elongation 99.8 4.9E-18 1.7E-22 185.8 14.8 160 457-627 18-188 (482)
144 1s0u_A EIF-2-gamma, translatio 99.8 1.1E-17 3.6E-22 178.4 17.0 166 456-628 6-198 (408)
145 3izy_P Translation initiation 99.7 1.1E-19 3.6E-24 202.2 0.5 160 458-627 4-167 (537)
146 3lxx_A GTPase IMAP family memb 99.7 2.5E-17 8.7E-22 161.3 17.3 165 456-629 27-215 (239)
147 2xtp_A GTPase IMAP family memb 99.7 5.6E-18 1.9E-22 167.6 12.4 164 456-629 20-209 (260)
148 1xzp_A Probable tRNA modificat 99.7 6.6E-18 2.3E-22 185.4 14.2 152 459-628 244-405 (482)
149 4fid_A G protein alpha subunit 99.7 7.7E-18 2.6E-22 178.0 13.6 118 508-628 161-328 (340)
150 1d2e_A Elongation factor TU (E 99.7 7.3E-18 2.5E-22 179.2 11.9 159 458-627 3-194 (397)
151 1mky_A Probable GTP-binding pr 99.7 4.9E-17 1.7E-21 174.8 18.2 160 458-629 180-356 (439)
152 2c78_A Elongation factor TU-A; 99.7 6E-18 2E-22 179.9 10.9 161 456-627 9-211 (405)
153 1azs_C GS-alpha; complex (lyas 99.7 7.4E-18 2.5E-22 181.6 11.5 121 508-631 217-388 (402)
154 1zcb_A G alpha I/13; GTP-bindi 99.7 6.6E-18 2.3E-22 179.3 10.1 119 508-630 201-355 (362)
155 1kk1_A EIF2gamma; initiation o 99.7 2.3E-17 8E-22 175.6 14.2 167 455-628 7-200 (410)
156 3p26_A Elongation factor 1 alp 99.7 8.6E-18 2.9E-22 183.1 11.0 157 456-618 31-228 (483)
157 3geh_A MNME, tRNA modification 99.7 9.1E-18 3.1E-22 183.4 10.4 153 458-629 224-385 (462)
158 1zun_B Sulfate adenylate trans 99.7 1.3E-17 4.5E-22 179.2 11.1 154 456-620 22-216 (434)
159 3tr5_A RF-3, peptide chain rel 99.7 3.3E-17 1.1E-21 181.6 14.4 117 456-583 11-149 (528)
160 2qag_A Septin-2, protein NEDD5 99.7 2.4E-18 8.1E-23 181.6 4.6 166 457-634 36-239 (361)
161 2aka_B Dynamin-1; fusion prote 99.7 1.3E-17 4.3E-22 167.0 8.4 161 457-625 25-250 (299)
162 2qtf_A Protein HFLX, GTP-bindi 99.7 1.5E-16 5.1E-21 168.7 16.6 163 460-630 181-356 (364)
163 1r5b_A Eukaryotic peptide chai 99.7 2.2E-18 7.6E-23 187.5 1.9 157 456-619 41-243 (467)
164 1pui_A ENGB, probable GTP-bind 99.7 7.6E-17 2.6E-21 152.4 12.0 156 458-627 26-198 (210)
165 1ega_A Protein (GTP-binding pr 99.7 3.4E-17 1.2E-21 168.3 10.1 158 458-628 8-175 (301)
166 3t5d_A Septin-7; GTP-binding p 99.7 2.5E-17 8.5E-22 165.8 8.2 161 456-626 6-202 (274)
167 1f60_A Elongation factor EEF1A 99.7 1.4E-17 4.7E-22 180.9 6.8 151 457-618 6-202 (458)
168 2elf_A Protein translation elo 99.7 8.9E-17 3E-21 170.6 12.8 149 460-629 23-181 (370)
169 4dcu_A GTP-binding protein ENG 99.7 2.9E-17 1E-21 177.3 8.8 154 458-628 23-185 (456)
170 1zo1_I IF2, translation initia 99.7 2.7E-18 9.3E-23 189.6 0.5 156 458-624 4-163 (501)
171 3lxw_A GTPase IMAP family memb 99.7 1.7E-16 5.8E-21 158.2 11.7 165 457-629 20-209 (247)
172 3izq_1 HBS1P, elongation facto 99.7 2.1E-17 7.1E-22 186.0 4.1 155 457-618 166-362 (611)
173 1g7s_A Translation initiation 99.7 4E-16 1.4E-20 175.3 14.3 162 458-628 5-218 (594)
174 2dy1_A Elongation factor G; tr 99.6 2.2E-15 7.6E-20 170.8 17.8 114 457-581 8-139 (665)
175 1u0l_A Probable GTPase ENGC; p 99.6 4.6E-17 1.6E-21 167.3 3.2 135 473-624 32-169 (301)
176 3avx_A Elongation factor TS, e 99.6 5.7E-16 2E-20 184.3 12.4 160 457-627 295-485 (1289)
177 3mca_A HBS1, elongation factor 99.6 3.1E-17 1.1E-21 183.9 0.9 150 456-616 175-371 (592)
178 1dar_A EF-G, elongation factor 99.6 6.5E-15 2.2E-19 167.8 19.2 119 454-583 8-144 (691)
179 2rdo_7 EF-G, elongation factor 99.6 1.9E-14 6.6E-19 164.3 19.6 120 456-583 8-149 (704)
180 2h5e_A Peptide chain release f 99.6 1.8E-14 6.3E-19 159.7 17.9 117 456-583 11-149 (529)
181 2qnr_A Septin-2, protein NEDD5 99.6 8.9E-16 3E-20 158.1 6.9 170 456-635 16-221 (301)
182 3def_A T7I23.11 protein; chlor 99.6 1.5E-14 5.3E-19 144.6 15.0 122 457-584 35-167 (262)
183 2xex_A Elongation factor G; GT 99.6 4.1E-14 1.4E-18 161.3 19.0 117 456-583 8-142 (693)
184 2hf9_A Probable hydrogenase ni 99.6 1E-16 3.5E-21 153.9 -3.1 163 457-629 37-225 (226)
185 3t34_A Dynamin-related protein 99.5 4.3E-15 1.5E-19 155.3 8.0 162 459-628 35-261 (360)
186 2wsm_A Hydrogenase expression/ 99.5 6.4E-15 2.2E-19 140.9 8.3 157 458-630 30-216 (221)
187 1jwy_B Dynamin A GTPase domain 99.5 2.1E-14 7.1E-19 145.3 10.4 113 508-629 131-263 (315)
188 1udx_A The GTP-binding protein 99.5 3.6E-14 1.2E-18 153.4 12.7 164 459-631 158-328 (416)
189 3vqt_A RF-3, peptide chain rel 99.5 1.5E-13 5E-18 153.1 16.3 118 456-584 29-168 (548)
190 1h65_A Chloroplast outer envel 99.5 2.6E-13 9E-18 136.0 14.7 121 457-583 38-169 (270)
191 2j69_A Bacterial dynamin-like 99.5 1.7E-13 5.8E-18 156.3 14.8 166 457-630 68-327 (695)
192 2qag_C Septin-7; cell cycle, c 99.5 1.3E-14 4.3E-19 157.0 4.8 160 456-626 29-225 (418)
193 2x2e_A Dynamin-1; nitration, h 99.5 1.4E-14 4.9E-19 151.3 4.1 159 458-624 31-254 (353)
194 1n0u_A EF-2, elongation factor 99.5 1.5E-13 5.2E-18 159.8 12.7 118 456-582 17-164 (842)
195 1wxq_A GTP-binding protein; st 99.4 2.1E-13 7.1E-18 146.3 9.3 86 459-544 1-114 (397)
196 4fn5_A EF-G 1, elongation fact 99.4 2.9E-12 9.9E-17 146.2 16.6 119 456-582 11-151 (709)
197 3j25_A Tetracycline resistance 99.4 1.6E-13 5.5E-18 155.0 4.6 161 458-629 2-240 (638)
198 1jal_A YCHF protein; nucleotid 99.3 2.3E-11 7.8E-16 129.7 17.8 151 459-611 3-240 (363)
199 3p32_A Probable GTPase RV1496/ 99.3 2.9E-12 9.8E-17 134.4 7.9 106 508-628 172-284 (355)
200 1yrb_A ATP(GTP)binding protein 99.3 3.2E-12 1.1E-16 125.5 7.4 113 508-627 109-256 (262)
201 2qpt_A EH domain-containing pr 99.2 2.8E-11 9.5E-16 134.8 13.4 119 457-582 64-232 (550)
202 2dby_A GTP-binding protein; GD 99.2 2E-11 7E-16 130.0 11.0 156 459-621 2-255 (368)
203 2p67_A LAO/AO transport system 99.2 1.1E-11 3.8E-16 129.4 6.7 105 508-627 149-260 (341)
204 2yv5_A YJEQ protein; hydrolase 99.1 6.6E-11 2.3E-15 121.9 6.4 96 518-622 66-163 (302)
205 2www_A Methylmalonic aciduria 99.1 8E-11 2.7E-15 123.7 7.0 103 508-627 167-278 (349)
206 3zvr_A Dynamin-1; hydrolase, D 99.0 5.3E-10 1.8E-14 129.2 9.0 159 457-625 50-275 (772)
207 3l82_B F-box only protein 4; T 99.0 8E-10 2.7E-14 110.9 8.1 112 514-629 108-224 (227)
208 4a9a_A Ribosome-interacting GT 98.9 3.1E-08 1.1E-12 106.0 15.8 156 457-620 71-240 (376)
209 2qm8_A GTPase/ATPase; G protei 98.8 3.8E-09 1.3E-13 110.6 7.6 104 508-627 148-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 98.8 5.4E-09 1.9E-13 112.7 7.4 91 457-547 21-132 (396)
211 3l2o_B F-box only protein 4; s 98.8 6E-09 2.1E-13 108.9 6.1 112 514-629 193-309 (312)
212 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.4E-07 4.9E-12 101.4 14.2 86 458-543 20-127 (392)
213 3h2y_A GTPase family protein; 98.6 1.1E-07 3.8E-12 100.8 10.1 98 517-626 55-158 (368)
214 3ec1_A YQEH GTPase; atnos1, at 98.5 3.1E-07 1E-11 97.3 9.3 98 517-626 57-160 (369)
215 2j37_W Signal recognition part 98.4 4.6E-07 1.6E-11 100.4 7.9 150 458-625 101-310 (504)
216 1puj_A YLQF, conserved hypothe 98.1 3E-06 1E-10 86.7 7.0 101 512-628 3-106 (282)
217 2qag_B Septin-6, protein NEDD5 97.9 6.7E-05 2.3E-09 81.8 13.1 26 458-483 42-67 (427)
218 1tq4_A IIGP1, interferon-induc 97.9 0.00026 8.8E-09 76.7 16.7 161 459-631 70-256 (413)
219 3ec1_A YQEH GTPase; atnos1, at 97.8 2.9E-06 9.8E-11 89.9 1.0 136 459-611 163-314 (369)
220 3sop_A Neuronal-specific septi 97.8 9E-05 3.1E-09 75.3 10.8 23 458-480 2-24 (270)
221 3h2y_A GTPase family protein; 97.7 1.8E-05 6.2E-10 83.8 4.1 126 459-601 161-304 (368)
222 3dm5_A SRP54, signal recogniti 97.6 0.00014 4.6E-09 79.7 9.6 86 508-609 183-274 (443)
223 2v3c_C SRP54, signal recogniti 97.6 9.6E-05 3.3E-09 80.3 8.1 83 508-607 181-271 (432)
224 1bif_A 6-phosphofructo-2-kinas 97.6 1.3E-05 4.5E-10 86.9 1.3 99 458-559 39-147 (469)
225 3cnl_A YLQF, putative uncharac 97.6 4.8E-05 1.6E-09 77.0 4.9 57 459-520 100-156 (262)
226 3cnl_A YLQF, putative uncharac 97.4 5.8E-05 2E-09 76.4 3.5 94 515-625 4-98 (262)
227 1puj_A YLQF, conserved hypothe 97.3 0.0002 6.9E-09 73.2 6.3 56 458-519 120-176 (282)
228 3kl4_A SRP54, signal recogniti 97.3 0.00014 4.7E-09 79.3 5.0 90 508-615 180-277 (433)
229 1j8m_F SRP54, signal recogniti 97.2 0.00057 1.9E-08 70.5 7.6 92 508-618 181-281 (297)
230 1f5n_A Interferon-induced guan 96.8 0.0018 6.3E-08 73.2 8.3 61 457-519 37-102 (592)
231 1t9h_A YLOQ, probable GTPase E 96.7 0.00049 1.7E-08 71.8 2.1 90 523-621 78-170 (307)
232 3szr_A Interferon-induced GTP- 96.7 0.0025 8.7E-08 71.8 7.6 23 460-482 47-69 (608)
233 4dzz_A Plasmid partitioning pr 96.6 0.0025 8.6E-08 59.6 5.8 84 508-601 76-159 (206)
234 3e70_C DPA, signal recognition 96.4 0.0053 1.8E-07 64.3 7.6 92 509-618 213-310 (328)
235 2rcn_A Probable GTPase ENGC; Y 96.2 0.0058 2E-07 65.1 7.0 82 528-621 127-212 (358)
236 2xxa_A Signal recognition part 95.7 0.065 2.2E-06 58.2 12.2 78 508-601 184-268 (433)
237 2yhs_A FTSY, cell division pro 95.4 0.026 8.8E-07 62.8 7.8 22 459-480 294-315 (503)
238 3cwq_A Para family chromosome 95.3 0.03 1E-06 53.9 7.2 82 508-601 68-150 (209)
239 3q5d_A Atlastin-1; G protein, 95.3 0.1 3.6E-06 57.0 12.1 63 457-519 66-151 (447)
240 2ffh_A Protein (FFH); SRP54, s 95.2 0.029 9.9E-07 61.0 7.3 103 508-628 181-293 (425)
241 2px0_A Flagellar biosynthesis 95.1 0.069 2.4E-06 54.8 9.6 85 508-608 183-273 (296)
242 1zu4_A FTSY; GTPase, signal re 94.7 0.061 2.1E-06 56.0 7.8 102 508-628 192-310 (320)
243 3end_A Light-independent proto 94.6 0.36 1.2E-05 48.5 13.0 81 508-601 157-238 (307)
244 2chg_A Replication factor C sm 94.3 0.082 2.8E-06 48.5 7.0 21 460-480 40-60 (226)
245 1ye8_A Protein THEP1, hypothet 93.9 0.031 1E-06 53.1 3.4 22 460-481 2-23 (178)
246 1kgd_A CASK, peripheral plasma 93.7 0.034 1.2E-06 52.0 3.1 22 460-481 7-28 (180)
247 3kjh_A CO dehydrogenase/acetyl 93.7 0.74 2.5E-05 43.7 12.5 64 507-579 131-194 (254)
248 3tr0_A Guanylate kinase, GMP k 93.5 0.039 1.3E-06 51.5 3.2 22 460-481 9-30 (205)
249 1lvg_A Guanylate kinase, GMP k 93.5 0.037 1.3E-06 52.8 3.1 21 460-480 6-26 (198)
250 1zp6_A Hypothetical protein AT 93.3 0.045 1.5E-06 50.6 3.3 23 459-481 10-32 (191)
251 3a00_A Guanylate kinase, GMP k 93.3 0.041 1.4E-06 51.6 3.0 21 461-481 4-24 (186)
252 1njg_A DNA polymerase III subu 93.2 0.083 2.8E-06 48.8 4.9 21 460-480 47-67 (250)
253 1znw_A Guanylate kinase, GMP k 93.1 0.047 1.6E-06 52.0 3.1 22 460-481 22-43 (207)
254 1z6g_A Guanylate kinase; struc 92.6 0.06 2E-06 52.2 3.1 22 460-481 25-46 (218)
255 4gp7_A Metallophosphoesterase; 92.5 0.052 1.8E-06 50.5 2.5 20 460-479 11-30 (171)
256 2rcn_A Probable GTPase ENGC; Y 92.5 0.082 2.8E-06 56.3 4.3 24 460-483 217-240 (358)
257 1knq_A Gluconate kinase; ALFA/ 92.4 0.094 3.2E-06 48.0 4.0 22 459-480 9-30 (175)
258 1s96_A Guanylate kinase, GMP k 92.4 0.067 2.3E-06 52.6 3.2 22 460-481 18-39 (219)
259 3tau_A Guanylate kinase, GMP k 92.2 0.075 2.6E-06 50.9 3.2 22 460-481 10-31 (208)
260 2j41_A Guanylate kinase; GMP, 92.1 0.077 2.6E-06 49.4 3.1 24 459-482 7-30 (207)
261 1htw_A HI0065; nucleotide-bind 92.1 0.076 2.6E-06 49.7 3.1 23 460-482 35-57 (158)
262 3lw7_A Adenylate kinase relate 92.0 0.082 2.8E-06 47.1 3.0 19 460-478 3-21 (179)
263 3c8u_A Fructokinase; YP_612366 92.0 0.094 3.2E-06 50.0 3.6 22 459-480 23-44 (208)
264 1kag_A SKI, shikimate kinase I 91.9 0.09 3.1E-06 47.8 3.2 22 459-480 5-26 (173)
265 3asz_A Uridine kinase; cytidin 91.8 0.11 3.6E-06 49.1 3.7 22 459-480 7-28 (211)
266 4a74_A DNA repair and recombin 91.8 0.089 3E-06 49.6 3.2 22 460-481 27-48 (231)
267 3kb2_A SPBC2 prophage-derived 91.8 0.096 3.3E-06 47.1 3.2 21 460-480 3-23 (173)
268 2bdt_A BH3686; alpha-beta prot 91.8 0.089 3.1E-06 48.9 3.1 21 460-480 4-24 (189)
269 1ex7_A Guanylate kinase; subst 91.6 0.094 3.2E-06 50.7 3.1 21 461-481 4-24 (186)
270 2ehv_A Hypothetical protein PH 91.5 0.096 3.3E-06 50.1 3.1 20 460-479 32-51 (251)
271 2qor_A Guanylate kinase; phosp 91.5 0.099 3.4E-06 49.6 3.2 23 459-481 13-35 (204)
272 1ly1_A Polynucleotide kinase; 91.5 0.1 3.5E-06 47.3 3.1 22 459-480 3-24 (181)
273 4eun_A Thermoresistant glucoki 91.4 0.1 3.6E-06 49.3 3.2 22 459-480 30-51 (200)
274 3ney_A 55 kDa erythrocyte memb 91.4 0.1 3.5E-06 51.1 3.1 22 460-481 21-42 (197)
275 3pfi_A Holliday junction ATP-d 91.4 0.65 2.2E-05 46.9 9.3 22 460-481 57-78 (338)
276 3tif_A Uncharacterized ABC tra 91.3 0.092 3.1E-06 52.0 2.8 22 460-481 33-54 (235)
277 2if2_A Dephospho-COA kinase; a 91.2 0.12 4.2E-06 48.4 3.5 22 459-480 2-23 (204)
278 2pcj_A ABC transporter, lipopr 91.2 0.1 3.4E-06 51.2 3.0 22 460-481 32-53 (224)
279 2jaq_A Deoxyguanosine kinase; 91.2 0.13 4.3E-06 47.7 3.4 21 460-480 2-22 (205)
280 1jbk_A CLPB protein; beta barr 91.1 0.12 4.1E-06 46.3 3.2 21 460-480 45-65 (195)
281 2bbw_A Adenylate kinase 4, AK4 91.1 0.12 4.1E-06 50.4 3.4 21 459-479 28-48 (246)
282 3ec2_A DNA replication protein 91.1 0.1 3.5E-06 48.2 2.7 22 459-480 39-60 (180)
283 3co5_A Putative two-component 91.1 0.47 1.6E-05 42.7 7.0 22 459-480 28-49 (143)
284 1nks_A Adenylate kinase; therm 91.0 0.14 4.6E-06 46.9 3.5 21 460-480 3-23 (194)
285 3fb4_A Adenylate kinase; psych 91.0 0.12 4.2E-06 48.8 3.3 21 460-480 2-22 (216)
286 3syl_A Protein CBBX; photosynt 91.0 0.58 2E-05 46.5 8.3 22 459-480 68-89 (309)
287 1sxj_E Activator 1 40 kDa subu 90.9 0.51 1.7E-05 47.8 8.0 20 461-480 39-58 (354)
288 3t61_A Gluconokinase; PSI-biol 90.9 0.12 4.2E-06 48.5 3.1 22 459-480 19-40 (202)
289 3dl0_A Adenylate kinase; phosp 90.9 0.13 4.4E-06 48.8 3.3 22 459-480 1-22 (216)
290 2wwf_A Thymidilate kinase, put 90.8 0.18 6.3E-06 47.2 4.3 22 459-480 11-32 (212)
291 1t9h_A YLOQ, probable GTPase E 90.8 0.077 2.6E-06 55.2 1.8 22 460-481 175-196 (307)
292 2onk_A Molybdate/tungstate ABC 90.8 0.12 4.2E-06 51.4 3.2 22 460-481 26-47 (240)
293 1qhx_A CPT, protein (chloramph 90.6 0.14 4.7E-06 46.8 3.1 22 459-480 4-25 (178)
294 1b0u_A Histidine permease; ABC 90.6 0.12 4E-06 52.1 2.8 22 460-481 34-55 (262)
295 3vaa_A Shikimate kinase, SK; s 90.5 0.15 5.2E-06 48.1 3.4 22 459-480 26-47 (199)
296 2i3b_A HCR-ntpase, human cance 90.5 0.13 4.3E-06 49.5 2.8 21 460-480 3-23 (189)
297 1g6h_A High-affinity branched- 90.4 0.12 4.2E-06 51.7 2.8 22 460-481 35-56 (257)
298 1cke_A CK, MSSA, protein (cyti 90.4 0.16 5.4E-06 48.3 3.4 22 459-480 6-27 (227)
299 1jjv_A Dephospho-COA kinase; P 90.3 0.17 5.9E-06 47.5 3.6 22 459-480 3-24 (206)
300 1kht_A Adenylate kinase; phosp 90.3 0.17 5.7E-06 46.3 3.4 22 459-480 4-25 (192)
301 1mv5_A LMRA, multidrug resista 90.2 0.14 4.9E-06 50.7 3.1 22 460-481 30-51 (243)
302 1sgw_A Putative ABC transporte 90.2 0.13 4.6E-06 50.4 2.8 22 460-481 37-58 (214)
303 2d2e_A SUFC protein; ABC-ATPas 90.2 0.14 4.9E-06 51.0 3.1 22 460-481 31-52 (250)
304 2cbz_A Multidrug resistance-as 90.2 0.14 4.9E-06 50.6 3.0 22 460-481 33-54 (237)
305 2ff7_A Alpha-hemolysin translo 90.2 0.14 4.9E-06 51.0 3.0 22 460-481 37-58 (247)
306 2cdn_A Adenylate kinase; phosp 90.2 0.19 6.6E-06 47.1 3.8 22 459-480 21-42 (201)
307 1ji0_A ABC transporter; ATP bi 90.2 0.13 4.6E-06 50.9 2.8 22 460-481 34-55 (240)
308 2zu0_C Probable ATP-dependent 90.1 0.15 5.2E-06 51.4 3.2 22 460-481 48-69 (267)
309 2pze_A Cystic fibrosis transme 90.1 0.15 5.2E-06 50.1 3.1 22 460-481 36-57 (229)
310 3lnc_A Guanylate kinase, GMP k 90.1 0.1 3.5E-06 50.3 1.8 22 460-481 29-51 (231)
311 3uie_A Adenylyl-sulfate kinase 90.0 0.16 5.5E-06 48.0 3.1 22 459-480 26-47 (200)
312 3cm0_A Adenylate kinase; ATP-b 90.0 0.21 7.1E-06 45.9 3.8 22 459-480 5-26 (186)
313 3gfo_A Cobalt import ATP-bindi 90.0 0.14 4.8E-06 52.2 2.8 22 460-481 36-57 (275)
314 4g1u_C Hemin import ATP-bindin 89.9 0.14 4.8E-06 51.7 2.8 22 460-481 39-60 (266)
315 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.17 5.6E-06 47.5 3.1 21 460-480 25-45 (235)
316 3trf_A Shikimate kinase, SK; a 89.9 0.18 6.2E-06 46.4 3.3 22 459-480 6-27 (185)
317 3b85_A Phosphate starvation-in 89.9 0.13 4.3E-06 50.3 2.3 22 460-481 24-45 (208)
318 2rhm_A Putative kinase; P-loop 89.9 0.21 7.3E-06 45.9 3.8 22 459-480 6-27 (193)
319 3n70_A Transport activator; si 89.8 0.83 2.9E-05 41.0 7.6 23 459-481 25-47 (145)
320 1sxj_D Activator 1 41 kDa subu 89.8 0.24 8.1E-06 49.9 4.3 21 461-481 61-81 (353)
321 2olj_A Amino acid ABC transpor 89.8 0.15 5.1E-06 51.6 2.8 22 460-481 52-73 (263)
322 2qi9_C Vitamin B12 import ATP- 89.7 0.15 5.2E-06 51.1 2.8 22 460-481 28-49 (249)
323 1vpl_A ABC transporter, ATP-bi 89.6 0.16 5.3E-06 51.2 2.8 22 460-481 43-64 (256)
324 2ghi_A Transport protein; mult 89.6 0.17 5.7E-06 50.9 3.0 22 460-481 48-69 (260)
325 1e4v_A Adenylate kinase; trans 89.5 0.2 6.9E-06 47.7 3.4 21 460-480 2-22 (214)
326 2ihy_A ABC transporter, ATP-bi 89.5 0.17 6E-06 51.5 3.1 22 460-481 49-70 (279)
327 2ixe_A Antigen peptide transpo 89.4 0.17 5.9E-06 51.2 3.0 22 460-481 47-68 (271)
328 2yz2_A Putative ABC transporte 89.4 0.16 5.6E-06 51.1 2.8 22 460-481 35-56 (266)
329 2plr_A DTMP kinase, probable t 89.4 0.23 7.7E-06 46.2 3.5 22 459-480 5-26 (213)
330 1tev_A UMP-CMP kinase; ploop, 89.3 0.23 7.9E-06 45.4 3.5 22 459-480 4-25 (196)
331 1lw7_A Transcriptional regulat 89.3 0.16 5.5E-06 52.9 2.7 23 459-481 171-193 (365)
332 2p65_A Hypothetical protein PF 89.3 0.16 5.6E-06 45.5 2.4 22 459-480 44-65 (187)
333 2qt1_A Nicotinamide riboside k 89.3 0.31 1.1E-05 45.9 4.5 23 459-481 22-44 (207)
334 2nq2_C Hypothetical ABC transp 89.3 0.17 5.8E-06 50.7 2.8 22 460-481 33-54 (253)
335 2oze_A ORF delta'; para, walke 89.1 0.82 2.8E-05 45.5 7.6 86 508-600 155-241 (298)
336 1aky_A Adenylate kinase; ATP:A 89.0 0.23 8E-06 47.3 3.4 22 459-480 5-26 (220)
337 2eyu_A Twitching motility prot 89.0 0.2 7E-06 50.4 3.1 21 460-480 27-47 (261)
338 4ido_A Atlastin-1; GTPase, GTP 88.9 4.2 0.00014 44.8 13.6 63 457-519 66-151 (457)
339 3aez_A Pantothenate kinase; tr 88.9 0.21 7.1E-06 51.7 3.2 22 459-480 91-112 (312)
340 2jeo_A Uridine-cytidine kinase 88.9 0.24 8.3E-06 48.4 3.5 22 459-480 26-47 (245)
341 1ixz_A ATP-dependent metallopr 88.8 0.22 7.5E-06 48.5 3.1 22 460-481 51-72 (254)
342 1sxj_C Activator 1 40 kDa subu 88.7 0.37 1.3E-05 49.2 4.9 21 461-481 49-69 (340)
343 1u0l_A Probable GTPase ENGC; p 88.7 0.18 6.3E-06 51.4 2.6 22 460-481 171-192 (301)
344 2pt5_A Shikimate kinase, SK; a 88.7 0.26 9E-06 44.4 3.3 21 460-480 2-22 (168)
345 1ukz_A Uridylate kinase; trans 88.7 0.35 1.2E-05 45.2 4.3 22 459-480 16-37 (203)
346 1zd8_A GTP:AMP phosphotransfer 88.6 0.26 8.8E-06 47.4 3.4 22 459-480 8-29 (227)
347 2pjz_A Hypothetical protein ST 88.6 0.22 7.6E-06 50.4 3.1 23 460-482 32-54 (263)
348 1qf9_A UMP/CMP kinase, protein 88.5 0.33 1.1E-05 44.3 4.0 22 459-480 7-28 (194)
349 2yv5_A YJEQ protein; hydrolase 88.5 0.22 7.5E-06 51.0 3.1 20 460-479 167-186 (302)
350 1np6_A Molybdopterin-guanine d 88.5 0.25 8.5E-06 47.1 3.2 23 459-481 7-29 (174)
351 2cvh_A DNA repair and recombin 88.5 0.24 8.3E-06 46.4 3.1 21 460-480 22-42 (220)
352 1uf9_A TT1252 protein; P-loop, 88.5 0.32 1.1E-05 45.1 3.9 24 458-481 8-31 (203)
353 3bos_A Putative DNA replicatio 88.5 0.26 9E-06 46.2 3.3 22 459-480 53-74 (242)
354 2v9p_A Replication protein E1; 88.5 0.24 8.1E-06 51.6 3.3 21 460-480 128-148 (305)
355 1n0w_A DNA repair protein RAD5 88.4 0.25 8.6E-06 47.0 3.1 22 460-481 26-47 (243)
356 2v54_A DTMP kinase, thymidylat 88.3 0.27 9.4E-06 45.6 3.3 23 459-481 5-27 (204)
357 2pbr_A DTMP kinase, thymidylat 88.3 0.28 9.7E-06 44.9 3.3 21 460-480 2-22 (195)
358 2c95_A Adenylate kinase 1; tra 88.3 0.3 1E-05 44.9 3.6 22 459-480 10-31 (196)
359 1via_A Shikimate kinase; struc 88.2 0.24 8.2E-06 45.4 2.8 21 460-480 6-26 (175)
360 2bbs_A Cystic fibrosis transme 88.2 0.24 8.3E-06 50.8 3.1 22 460-481 66-87 (290)
361 3tlx_A Adenylate kinase 2; str 88.2 0.3 1E-05 48.0 3.7 23 458-480 29-51 (243)
362 3iij_A Coilin-interacting nucl 88.2 0.26 9E-06 45.3 3.1 22 459-480 12-33 (180)
363 2bwj_A Adenylate kinase 5; pho 88.2 0.3 1E-05 45.1 3.4 22 459-480 13-34 (199)
364 1cr0_A DNA primase/helicase; R 88.0 0.26 9E-06 49.2 3.2 22 460-481 37-58 (296)
365 2pt7_A CAG-ALFA; ATPase, prote 88.0 0.49 1.7E-05 49.2 5.3 22 460-481 173-194 (330)
366 1nn5_A Similar to deoxythymidy 87.9 0.33 1.1E-05 45.4 3.6 22 459-480 10-31 (215)
367 1y63_A LMAJ004144AAA protein; 87.9 0.3 1E-05 45.6 3.3 23 459-481 11-33 (184)
368 3be4_A Adenylate kinase; malar 87.9 0.32 1.1E-05 46.6 3.6 22 459-480 6-27 (217)
369 1rz3_A Hypothetical protein rb 87.8 0.37 1.3E-05 45.7 3.9 22 459-480 23-44 (201)
370 2x8a_A Nuclear valosin-contain 87.8 0.27 9.2E-06 49.5 3.1 21 461-481 47-67 (274)
371 2z0h_A DTMP kinase, thymidylat 87.7 0.31 1.1E-05 44.9 3.3 21 460-480 2-22 (197)
372 2yvu_A Probable adenylyl-sulfa 87.7 0.4 1.4E-05 44.4 4.0 22 459-480 14-35 (186)
373 1gtv_A TMK, thymidylate kinase 87.6 0.14 4.7E-06 48.1 0.8 21 460-480 2-22 (214)
374 2xb4_A Adenylate kinase; ATP-b 87.6 0.32 1.1E-05 47.0 3.4 21 460-480 2-22 (223)
375 3sr0_A Adenylate kinase; phosp 87.6 0.31 1.1E-05 47.5 3.3 21 460-480 2-22 (206)
376 2f1r_A Molybdopterin-guanine d 87.5 0.17 5.8E-06 48.0 1.4 21 460-480 4-24 (171)
377 3b9q_A Chloroplast SRP recepto 87.5 0.29 1E-05 50.4 3.2 22 459-480 101-122 (302)
378 1rj9_A FTSY, signal recognitio 87.5 0.28 9.7E-06 50.6 3.1 21 460-480 104-124 (304)
379 3fvq_A Fe(3+) IONS import ATP- 87.4 0.29 9.9E-06 52.1 3.2 22 460-481 32-53 (359)
380 1zak_A Adenylate kinase; ATP:A 87.4 0.31 1.1E-05 46.5 3.2 22 459-480 6-27 (222)
381 3kta_A Chromosome segregation 87.4 0.33 1.1E-05 44.6 3.2 21 460-480 28-48 (182)
382 2kjq_A DNAA-related protein; s 87.3 0.22 7.7E-06 45.7 2.0 22 460-481 38-59 (149)
383 1iy2_A ATP-dependent metallopr 87.2 0.31 1.1E-05 48.4 3.1 22 460-481 75-96 (278)
384 1jr3_A DNA polymerase III subu 87.2 0.47 1.6E-05 48.1 4.6 21 460-480 40-60 (373)
385 1iqp_A RFCS; clamp loader, ext 87.2 0.4 1.4E-05 47.5 3.9 22 460-481 48-69 (327)
386 1sq5_A Pantothenate kinase; P- 87.1 0.41 1.4E-05 48.9 4.1 22 459-480 81-102 (308)
387 1e6c_A Shikimate kinase; phosp 87.0 0.35 1.2E-05 43.8 3.1 21 460-480 4-24 (173)
388 2w58_A DNAI, primosome compone 86.9 0.37 1.3E-05 45.0 3.3 22 459-480 55-76 (202)
389 1z47_A CYSA, putative ABC-tran 86.8 0.32 1.1E-05 51.7 3.1 22 460-481 43-64 (355)
390 1lv7_A FTSH; alpha/beta domain 86.8 0.35 1.2E-05 47.1 3.2 21 460-480 47-67 (257)
391 2it1_A 362AA long hypothetical 86.7 0.33 1.1E-05 51.6 3.2 22 460-481 31-52 (362)
392 2yyz_A Sugar ABC transporter, 86.7 0.32 1.1E-05 51.6 3.1 22 460-481 31-52 (359)
393 1odf_A YGR205W, hypothetical 3 86.6 0.44 1.5E-05 48.8 4.0 24 457-480 30-53 (290)
394 2gza_A Type IV secretion syste 86.6 0.91 3.1E-05 47.6 6.4 22 460-481 177-198 (361)
395 3tqc_A Pantothenate kinase; bi 86.6 0.44 1.5E-05 49.9 4.0 24 457-480 91-114 (321)
396 2vp4_A Deoxynucleoside kinase; 86.6 0.26 8.7E-06 47.9 2.1 23 459-481 21-43 (230)
397 1g29_1 MALK, maltose transport 86.5 0.33 1.1E-05 51.7 3.1 22 460-481 31-52 (372)
398 1xwi_A SKD1 protein; VPS4B, AA 86.5 1.6 5.4E-05 44.8 8.1 23 459-481 46-68 (322)
399 1in4_A RUVB, holliday junction 86.5 0.34 1.2E-05 49.8 3.0 22 460-481 53-74 (334)
400 1gvn_B Zeta; postsegregational 86.5 0.42 1.4E-05 48.5 3.7 22 459-480 34-55 (287)
401 1ak2_A Adenylate kinase isoenz 86.4 0.42 1.5E-05 46.2 3.5 22 459-480 17-38 (233)
402 2pez_A Bifunctional 3'-phospho 86.4 0.39 1.3E-05 44.2 3.1 22 459-480 6-27 (179)
403 3rlf_A Maltose/maltodextrin im 86.4 0.35 1.2E-05 51.9 3.2 22 460-481 31-52 (381)
404 3tui_C Methionine import ATP-b 86.4 0.35 1.2E-05 51.6 3.2 22 460-481 56-77 (366)
405 1v43_A Sugar-binding transport 86.3 0.36 1.2E-05 51.5 3.2 22 460-481 39-60 (372)
406 2ze6_A Isopentenyl transferase 86.2 0.38 1.3E-05 47.7 3.1 21 460-480 3-23 (253)
407 2dr3_A UPF0273 protein PH0284; 86.2 0.4 1.4E-05 45.5 3.2 21 460-480 25-45 (247)
408 2iyv_A Shikimate kinase, SK; t 86.2 0.4 1.4E-05 44.1 3.1 21 460-480 4-24 (184)
409 2obl_A ESCN; ATPase, hydrolase 86.2 0.41 1.4E-05 50.4 3.5 22 460-481 73-94 (347)
410 3nh6_A ATP-binding cassette SU 86.1 0.24 8.1E-06 51.5 1.6 21 460-480 82-102 (306)
411 2zan_A Vacuolar protein sortin 86.1 1.7 5.9E-05 46.7 8.4 22 460-481 169-190 (444)
412 1xp8_A RECA protein, recombina 86.0 0.79 2.7E-05 48.6 5.6 21 460-480 76-96 (366)
413 3vfd_A Spastin; ATPase, microt 85.9 2.4 8.2E-05 44.3 9.2 23 459-481 149-171 (389)
414 2vli_A Antibiotic resistance p 85.9 0.28 9.7E-06 44.8 1.9 22 459-480 6-27 (183)
415 1nlf_A Regulatory protein REPA 85.8 0.42 1.4E-05 47.6 3.2 21 460-480 32-52 (279)
416 4e22_A Cytidylate kinase; P-lo 85.7 0.45 1.5E-05 47.1 3.4 21 459-479 28-48 (252)
417 2qby_A CDC6 homolog 1, cell di 85.7 0.43 1.5E-05 48.1 3.2 21 460-480 47-67 (386)
418 3a4m_A L-seryl-tRNA(SEC) kinas 85.6 0.42 1.4E-05 47.4 3.1 22 459-480 5-26 (260)
419 1vht_A Dephospho-COA kinase; s 85.6 0.55 1.9E-05 44.6 3.8 22 459-480 5-26 (218)
420 2p5t_B PEZT; postsegregational 85.3 0.4 1.4E-05 47.3 2.7 22 459-480 33-54 (253)
421 1zuh_A Shikimate kinase; alpha 85.3 0.52 1.8E-05 42.8 3.3 22 459-480 8-29 (168)
422 3jvv_A Twitching mobility prot 85.2 0.43 1.5E-05 50.4 3.1 21 460-480 125-145 (356)
423 2qz4_A Paraplegin; AAA+, SPG7, 85.2 0.46 1.6E-05 45.8 3.1 22 459-480 40-61 (262)
424 3gd7_A Fusion complex of cysti 85.2 0.44 1.5E-05 51.1 3.2 21 460-480 49-69 (390)
425 1uj2_A Uridine-cytidine kinase 85.0 0.54 1.9E-05 46.1 3.6 24 457-480 21-44 (252)
426 3d31_A Sulfate/molybdate ABC t 85.0 0.3 1E-05 51.6 1.8 22 460-481 28-49 (348)
427 2og2_A Putative signal recogni 85.0 0.46 1.6E-05 50.5 3.2 22 459-480 158-179 (359)
428 1m7g_A Adenylylsulfate kinase; 85.0 0.48 1.7E-05 45.0 3.1 22 459-480 26-47 (211)
429 3b9p_A CG5977-PA, isoform A; A 84.8 0.48 1.6E-05 47.0 3.0 23 459-481 55-77 (297)
430 1xjc_A MOBB protein homolog; s 84.7 0.52 1.8E-05 45.0 3.1 22 459-480 5-26 (169)
431 3h4m_A Proteasome-activating n 84.7 0.47 1.6E-05 46.6 3.0 22 460-481 53-74 (285)
432 3u61_B DNA polymerase accessor 84.7 3.5 0.00012 41.3 9.4 21 461-481 51-71 (324)
433 1nij_A Hypothetical protein YJ 84.7 0.41 1.4E-05 49.2 2.6 22 460-481 6-27 (318)
434 2ewv_A Twitching motility prot 84.6 0.5 1.7E-05 49.9 3.3 21 460-480 138-158 (372)
435 2npi_A Protein CLP1; CLP1-PCF1 84.4 0.49 1.7E-05 51.7 3.2 21 460-480 140-160 (460)
436 2f6r_A COA synthase, bifunctio 84.2 0.76 2.6E-05 46.3 4.3 23 458-480 75-97 (281)
437 2fna_A Conserved hypothetical 84.0 0.56 1.9E-05 46.7 3.2 22 460-481 32-53 (357)
438 1oxx_K GLCV, glucose, ABC tran 83.8 0.29 9.9E-06 51.7 1.1 22 460-481 33-54 (353)
439 2qen_A Walker-type ATPase; unk 83.8 0.56 1.9E-05 46.7 3.1 22 460-481 33-54 (350)
440 3fwy_A Light-independent proto 83.8 4.1 0.00014 42.1 9.7 81 508-601 164-245 (314)
441 2dpy_A FLII, flagellum-specifi 83.6 0.61 2.1E-05 50.6 3.5 22 460-481 159-180 (438)
442 1ltq_A Polynucleotide kinase; 83.4 0.6 2E-05 46.5 3.1 22 459-480 3-24 (301)
443 1fnn_A CDC6P, cell division co 83.4 0.6 2E-05 47.4 3.1 22 460-481 46-67 (389)
444 1ofh_A ATP-dependent HSL prote 83.4 0.61 2.1E-05 45.9 3.1 21 460-480 52-72 (310)
445 1l8q_A Chromosomal replication 83.4 0.58 2E-05 47.3 3.0 21 460-480 39-59 (324)
446 4eaq_A DTMP kinase, thymidylat 83.3 0.91 3.1E-05 44.5 4.3 23 458-480 26-48 (229)
447 4b4t_L 26S protease subunit RP 83.1 1.1 3.9E-05 48.8 5.4 23 459-481 216-238 (437)
448 1q3t_A Cytidylate kinase; nucl 83.1 0.73 2.5E-05 44.6 3.5 24 457-480 15-38 (236)
449 3umf_A Adenylate kinase; rossm 83.1 0.66 2.3E-05 45.8 3.2 21 460-480 31-51 (217)
450 1yqt_A RNAse L inhibitor; ATP- 83.0 0.63 2.2E-05 51.7 3.4 22 460-481 49-70 (538)
451 4b4t_J 26S protease regulatory 82.9 2.2 7.6E-05 46.2 7.5 21 460-480 184-204 (405)
452 4b4t_K 26S protease regulatory 82.6 2.2 7.5E-05 46.4 7.4 21 460-480 208-228 (428)
453 3nwj_A ATSK2; P loop, shikimat 82.5 0.61 2.1E-05 46.8 2.8 22 459-480 49-70 (250)
454 1p9r_A General secretion pathw 82.5 0.65 2.2E-05 50.2 3.1 22 460-481 169-190 (418)
455 3cf0_A Transitional endoplasmi 82.4 0.67 2.3E-05 46.8 3.0 22 460-481 51-72 (301)
456 4b4t_I 26S protease regulatory 82.2 1.4 4.8E-05 48.3 5.6 23 459-481 217-239 (437)
457 4fcw_A Chaperone protein CLPB; 81.9 0.72 2.5E-05 45.7 3.0 22 459-480 48-69 (311)
458 2oap_1 GSPE-2, type II secreti 81.9 0.68 2.3E-05 51.2 3.1 23 460-482 262-284 (511)
459 3b60_A Lipid A export ATP-bind 81.6 0.72 2.5E-05 51.3 3.2 22 460-481 371-392 (582)
460 2v1u_A Cell division control p 81.5 0.66 2.3E-05 46.8 2.6 21 460-480 46-66 (387)
461 1f2t_A RAD50 ABC-ATPase; DNA d 81.5 0.85 2.9E-05 41.8 3.1 19 461-479 26-44 (149)
462 3t15_A Ribulose bisphosphate c 81.4 0.83 2.8E-05 46.2 3.3 22 459-480 37-58 (293)
463 1d2n_A N-ethylmaleimide-sensit 81.3 1.1 3.7E-05 44.1 4.1 23 458-480 64-86 (272)
464 3euj_A Chromosome partition pr 81.1 0.77 2.6E-05 50.8 3.1 21 460-480 31-51 (483)
465 3ozx_A RNAse L inhibitor; ATP 81.1 0.7 2.4E-05 51.4 2.8 22 460-481 27-48 (538)
466 3uk6_A RUVB-like 2; hexameric 80.9 0.85 2.9E-05 46.4 3.2 21 460-480 72-92 (368)
467 1pzn_A RAD51, DNA repair and r 80.9 0.83 2.9E-05 47.8 3.2 22 460-481 133-154 (349)
468 3b5x_A Lipid A export ATP-bind 80.8 0.8 2.7E-05 50.9 3.2 22 460-481 371-392 (582)
469 2zts_A Putative uncharacterize 80.5 0.93 3.2E-05 43.0 3.1 20 460-479 32-51 (251)
470 2qby_B CDC6 homolog 3, cell di 80.4 0.91 3.1E-05 46.2 3.2 21 460-480 47-67 (384)
471 3ake_A Cytidylate kinase; CMP 80.2 1 3.6E-05 41.7 3.3 21 460-480 4-24 (208)
472 2grj_A Dephospho-COA kinase; T 80.2 1.2 4E-05 42.8 3.8 24 457-480 11-34 (192)
473 3r20_A Cytidylate kinase; stru 79.7 1.1 3.6E-05 44.9 3.4 23 458-480 9-31 (233)
474 1tf7_A KAIC; homohexamer, hexa 79.7 0.91 3.1E-05 49.8 3.2 19 461-479 42-60 (525)
475 3j16_B RLI1P; ribosome recycli 79.7 0.9 3.1E-05 51.4 3.2 22 460-481 105-126 (608)
476 1yqt_A RNAse L inhibitor; ATP- 79.5 1 3.4E-05 50.1 3.4 22 460-481 314-335 (538)
477 2r62_A Cell division protease 79.2 0.51 1.7E-05 46.1 0.9 21 460-480 46-66 (268)
478 3uc9_A Increased recombination 79.1 0.85 2.9E-05 46.2 2.5 22 460-481 29-52 (233)
479 2bjv_A PSP operon transcriptio 79.1 1.1 3.7E-05 43.8 3.2 23 459-481 30-52 (265)
480 1vma_A Cell division protein F 78.8 1.1 3.6E-05 46.4 3.1 86 508-609 187-284 (306)
481 2yl4_A ATP-binding cassette SU 78.8 0.74 2.5E-05 51.3 2.1 22 460-481 372-393 (595)
482 3eie_A Vacuolar protein sortin 78.7 1.1 3.9E-05 45.5 3.3 22 459-480 52-73 (322)
483 4b4t_M 26S protease regulatory 78.6 1.5 5E-05 47.9 4.3 22 460-481 217-238 (434)
484 1svm_A Large T antigen; AAA+ f 78.4 1.1 3.6E-05 47.9 3.1 21 460-480 171-191 (377)
485 3zvl_A Bifunctional polynucleo 78.4 0.96 3.3E-05 48.3 2.7 22 459-480 259-280 (416)
486 3pxg_A Negative regulator of g 78.3 1.1 3.6E-05 48.7 3.1 21 460-480 203-223 (468)
487 3bk7_A ABC transporter ATP-bin 78.3 1 3.5E-05 50.9 3.1 22 460-481 119-140 (607)
488 3ozx_A RNAse L inhibitor; ATP 78.1 0.99 3.4E-05 50.2 2.8 22 460-481 296-317 (538)
489 3bk7_A ABC transporter ATP-bin 78.0 1.2 4E-05 50.4 3.4 22 460-481 384-405 (607)
490 3qf7_A RAD50; ABC-ATPase, ATPa 77.7 1.2 4E-05 46.9 3.1 19 461-479 26-44 (365)
491 1hqc_A RUVB; extended AAA-ATPa 77.7 0.9 3.1E-05 45.3 2.1 21 460-480 40-60 (324)
492 1um8_A ATP-dependent CLP prote 77.3 1.2 4.2E-05 46.0 3.1 23 459-481 73-95 (376)
493 3qf4_B Uncharacterized ABC tra 77.3 0.9 3.1E-05 50.8 2.2 21 460-480 383-403 (598)
494 2ocp_A DGK, deoxyguanosine kin 77.2 1.6 5.5E-05 42.2 3.7 22 459-480 3-24 (241)
495 2qp9_X Vacuolar protein sortin 77.0 1.3 4.4E-05 46.1 3.1 22 460-481 86-107 (355)
496 1z6t_A APAF-1, apoptotic prote 76.9 1.3 4.3E-05 48.4 3.2 22 460-481 149-170 (591)
497 3d8b_A Fidgetin-like protein 1 76.5 1.3 4.4E-05 46.0 3.0 23 459-481 118-140 (357)
498 2a5y_B CED-4; apoptosis; HET: 76.5 1.3 4.3E-05 48.7 3.1 22 459-480 153-174 (549)
499 2qgz_A Helicase loader, putati 76.4 1.5 5E-05 45.0 3.3 22 459-480 153-174 (308)
500 3qks_A DNA double-strand break 76.3 1.5 5E-05 42.1 3.1 20 460-479 25-44 (203)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.3e-38 Score=313.80 Aligned_cols=198 Identities=29% Similarity=0.511 Sum_probs=144.1
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
.+.|||+|||+.|||||||++||+.+.|...|.+|+|.+|..+.+.+++. .+.|+||||+||++|+.++..||++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~-~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSC-EEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecce-EEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34599999999999999999999999999999999999999999999887 79999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+..+. ..++|+||||||+||.+.+ .+..+++.+++..+++ .||||||++|.||
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~----~~~~piilVgNK~Dl~~~r-~V~~~e~~~~a~~~~~-~~~e~SAktg~nV 163 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLVGNKTDLADKR-QVSIEEGERKAKELNV-MFIETSAKAGYNV 163 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEEEBTTTTBSH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc----CCCCeEEEEeeccchHhcC-cccHHHHhhHHHHhCC-eeEEEeCCCCcCH
Confidence 99999999999999999999998753 3579999999999998877 8999999999999996 7999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCCcccccccccCccccCCCCCCCC
Q psy4094 616 DDAAKTLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663 (663)
Q Consensus 616 eELFe~IIr~Ile~~k~~~~~~~~s~~~~si~l~k~~~k~Kkkk~C~C 663 (663)
+++|+.|++.|........... .....+.+.....+.++++||||
T Consensus 164 ~e~F~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 164 KQLFRRVAAALPGMESTQDRSR---EDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp HHHHHHHHHHC-------------------------------------
T ss_pred HHHHHHHHHHHHhhhccccccc---ccccccccCCCCCCCCCCCCCce
Confidence 9999999999876554332211 11223344444445566778888
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=8.4e-32 Score=254.89 Aligned_cols=172 Identities=35% Similarity=0.657 Sum_probs=156.3
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|+.++..+++++|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK-TVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE-EEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE-EEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 456799999999999999999999999999999999999999888888876 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|||||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++ +||+|||++|.|
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYA----TSTVLKLLVGNKCDLKDKR-VVEYDVAKEFADANKM-PFLETSALDSTN 157 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-CEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence 999999999999999999999988653 3468999999999998766 6778889999999885 899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKVQ 633 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~~ 633 (663)
|+++|.+|++.+..+....
T Consensus 158 i~~l~~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 158 VEDAFLTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999998876543
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.98 E-value=5.9e-32 Score=254.43 Aligned_cols=176 Identities=34% Similarity=0.612 Sum_probs=154.4
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR-LVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSC-EEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE-EEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 456799999999999999999999999999999999999999999988876 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..+.......++|+|||+||+|+.. + .+..+++..++......+||+|||++|.|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-R-QVATKRAQAWCYSKNNIPYFETSAKEAIN 161 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-C-CSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc-c-ccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 999999999999999999999988765433335789999999999973 3 56788888888844446899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKVQ 633 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~~ 633 (663)
|+++|++|++.+..+....
T Consensus 162 i~~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 162 VEQAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 9999999999998876543
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=244.02 Aligned_cols=170 Identities=23% Similarity=0.397 Sum_probs=150.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++.+|++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGE-EVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTE-EEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCE-EEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 3468999999999999999999999998888888888665 455666665 68899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||+++..+|+.+..|+..+..+.. ..++|+|||+||+|+...+ .+..+++..++..+++ +||+|||++|.||
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKE---DENVPFLLVGNKSDLEDKR-QVSVEEAKNRAEQWNV-NYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTT---CSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEeccCccccc-cccHHHHHHHHHHhCC-eEEEEeCCCCCCH
Confidence 999999999999999999999887532 3469999999999998765 6788899999999985 8999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy4094 616 DDAAKTLVQKILENDKV 632 (663)
Q Consensus 616 eELFe~IIr~Ile~~k~ 632 (663)
+++|.+|++.+..++..
T Consensus 165 ~~l~~~l~~~i~~~~~~ 181 (206)
T 2bov_A 165 DKVFFDLMREIRARKME 181 (206)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccc
Confidence 99999999999876543
No 5
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=2.3e-30 Score=236.58 Aligned_cols=176 Identities=32% Similarity=0.592 Sum_probs=143.2
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++...+.+.|||++|+++|..++..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45679999999999999999999999999999999999999999998885446899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..+.......++|+|||+||+|+......+..+++.+++...+..+|++|||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 99999999999999999999999877654445679999999999996544467788899999855556899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4094 615 IDDAAKTLVQKILEND 630 (663)
Q Consensus 615 VeELFe~IIr~Ile~~ 630 (663)
|+++|++|++.++.++
T Consensus 165 i~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 165 VDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=6.4e-30 Score=243.63 Aligned_cols=172 Identities=32% Similarity=0.588 Sum_probs=146.5
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.+|++.++....+.+++. .+.++|||++|+++|..++..+++++|
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGK-RVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTE-EEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCE-EEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 4567799999999999999999999999998889999999998888888875 689999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++..||+|||++|.
T Consensus 104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 104 GAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGNKSDLSELR-EVSLAEAQSLAEHYDILCAIETSAKDSS 178 (201)
T ss_dssp EEEEEEETTBHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTCSEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCcccccc-ccCHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 9999999999999999999999998753 3569999999999998765 6788899999999996589999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4094 614 NIDDAAKTLVQKILENDK 631 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k 631 (663)
||+++|++|++.+..+..
T Consensus 179 gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 179 NVEEAFLRVATELIMRHG 196 (201)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999986543
No 7
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=2e-30 Score=239.56 Aligned_cols=172 Identities=33% Similarity=0.662 Sum_probs=126.6
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRTITTAYYRGAM 82 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTE-EEEEEEEEC---------CCTTTTTCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCE-EEEEEEEcCCCChhhhhhHHHHHhcCC
Confidence 3456799999999999999999999999888889999999999888888775 689999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++ +||+|||++|.
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 156 (183)
T 2fu5_C 83 GIMLVYDITNEKSFDNIRNWIRNIEEHA----SADVEKMILGNKCDVNDKR-QVSKERGEKLALDYGI-KFMETSAKANI 156 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEEC--CCSCC-CSCHHHHHHHHHHHTC-EEEECCC---C
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECccCCccC-cCCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 9999999999999999999999998653 2469999999999998766 6778899999999995 89999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy4094 614 NIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k~ 632 (663)
||+++|.+|++.+..+...
T Consensus 157 ~i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 157 NVENAFFTLARDIKAKMDK 175 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhc
Confidence 9999999999999876554
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=234.36 Aligned_cols=173 Identities=33% Similarity=0.648 Sum_probs=156.8
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
...+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++.+
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK-TIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE-EEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE-EEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34467799999999999999999999999999999999999999999998876 68899999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
|++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|
T Consensus 90 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g 163 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKCDLTTKK-VVDYTTAKEFADSLGI-PFLETSAKNA 163 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-CEEEECTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECccccccc-ccCHHHHHHHHHHcCC-cEEEEeCCCC
Confidence 99999999999999999999999998653 3478999999999998766 6788899999999995 8999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhh
Q psy4094 613 INIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k~ 632 (663)
.||+++|++|++.+..+...
T Consensus 164 ~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp TTHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999877553
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=2.2e-29 Score=229.53 Aligned_cols=167 Identities=31% Similarity=0.614 Sum_probs=151.4
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|+
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-KIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTE-EEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCe-EEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 456799999999999999999999999998889999999998888888775 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++ .|++|||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT----NPNTVIILIGNKADLEAQR-DVTYEEAKQFAEENGL-LFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 999999999999999999999988653 2468999999999997655 6778899999999985 899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy4094 615 IDDAAKTLVQKILE 628 (663)
Q Consensus 615 VeELFe~IIr~Ile 628 (663)
|+++|++|++.+++
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998854
No 10
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=3.1e-29 Score=229.30 Aligned_cols=172 Identities=30% Similarity=0.574 Sum_probs=150.7
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++.+|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH-FVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE-EEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCE-EEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 346799999999999999999999999999899999999998888888875 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..+.......++|+|||+||+|+. .+ .+..+++.+++......+|++|||++|.|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ER-QVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SC-SSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-cc-ccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 99999999999999999999999877654445679999999999997 33 57888999999855556899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy4094 615 IDDAAKTLVQKILEN 629 (663)
Q Consensus 615 VeELFe~IIr~Ile~ 629 (663)
|+++|++|++.++.+
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998764
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=231.74 Aligned_cols=172 Identities=34% Similarity=0.660 Sum_probs=153.3
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
...+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|++++..++..+++++
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~ 82 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE-KVKLQIWDTAGQERFRTITSTYYRGT 82 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE-EEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE-EEEEEEEcCCCchhhhhhHHHHhccC
Confidence 34567899999999999999999999999999899999999999999998876 68999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
|++|+|||++++.+|+.+..|+..+...+ .++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 155 (181)
T 3tw8_B 83 HGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILVGNKNDDPERK-VVETEDAYKFAGQMGI-QLFETSAKEN 155 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHC-----TTSEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-CEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECCCCchhc-ccCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 99999999999999999999999998653 469999999999998766 6778889999999996 8999999999
Q ss_pred cCHHHHHHHHHHHHHhhhhh
Q psy4094 613 INIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k~ 632 (663)
.||+++|++|++.+...+..
T Consensus 156 ~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 156 VNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp BSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999887654
No 12
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=4.1e-29 Score=230.76 Aligned_cols=169 Identities=30% Similarity=0.445 Sum_probs=151.3
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.....+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++++|
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQ-WAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCc-EEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 345679999999999999999999999999999999998777 667777765 688999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC-CC
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK-DN 612 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK-tG 612 (663)
++|+|||++++.+|+.+..|+..+..+.. ..++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||+ +|
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 166 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKD---RESFPMILVANKVDLMHLR-KVTRDQGKEMATKYNI-PYIETSAKDPP 166 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHT---SSCCCEEEEEECTTCSTTC-CSCHHHHHHHHHHHTC-CEEEEBCSSSC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEECCCchhcc-CcCHHHHHHHHHHhCC-eEEEeccCCCC
Confidence 99999999999999999999998876532 3568999999999998766 7888999999999994 89999999 99
Q ss_pred cCHHHHHHHHHHHHHhh
Q psy4094 613 INIDDAAKTLVQKILEN 629 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~ 629 (663)
.||+++|++|++.+.++
T Consensus 167 ~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 167 LNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp BSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999988653
No 13
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.5e-29 Score=235.10 Aligned_cols=172 Identities=32% Similarity=0.604 Sum_probs=154.8
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
...+..+||+|+|+.|||||||+++|++..+...+.++++.++..+.+.+++. .+.+.|||++|+++|..++..+++++
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA-AVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTE-EEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34567899999999999999999999999999889999999998888888765 68999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
|++|+|||++++.+|+.+..|+..+..+ ...++|+|||+||+|+...+ .+..+++..++..+++ .||+|||++|
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~----~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 172 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDH----AEATIVVMLVGNKSDLSQAR-EVPTEEARMFAENNGL-LFLETSALDS 172 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTT----SCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECCCccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 9999999999999999999999988753 23579999999999997655 5778889999999885 8999999999
Q ss_pred cCHHHHHHHHHHHHHhhhh
Q psy4094 613 INIDDAAKTLVQKILENDK 631 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k 631 (663)
.||+++|++|++.++++..
T Consensus 173 ~gi~~l~~~l~~~i~~~~~ 191 (193)
T 2oil_A 173 TNVELAFETVLKEIFAKVS 191 (193)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999987643
No 14
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=2e-29 Score=232.78 Aligned_cols=172 Identities=33% Similarity=0.604 Sum_probs=155.4
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
...+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++
T Consensus 5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~ 83 (186)
T 2bme_A 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGK-YVKLQIWDTAGQERFRSVTRSYYRGA 83 (186)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHHhcC
Confidence 34567799999999999999999999999999999999999999888888875 68899999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
|++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++ .|++|||++|
T Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (186)
T 2bme_A 84 AGALLVYDITSRETYNALTNWLTDARMLA----SQNIVIILCGNKKDLDADR-EVTFLEASRFAQENEL-MFLETSALTG 157 (186)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEecCCCC
Confidence 99999999999999999999999887653 2568999999999997655 6778889999999985 8999999999
Q ss_pred cCHHHHHHHHHHHHHhhhh
Q psy4094 613 INIDDAAKTLVQKILENDK 631 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k 631 (663)
.||+++|++|++.+..+..
T Consensus 158 ~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 158 ENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999987654
No 15
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=2.9e-29 Score=235.35 Aligned_cols=171 Identities=32% Similarity=0.624 Sum_probs=150.1
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGK-QIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTE-EEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE-EEEEEEEECCCchhhhhhHHHHhccCC
Confidence 3456799999999999999999999999998888999999998888888876 689999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 169 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQHS----SSNMVIMLIGNKSDLESRR-DVKREEGEAFAREHGL-IFMETSAKTAC 169 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEEECTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccCCcc-ccCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 9999999999999999999999998653 3579999999999997655 6778899999999985 89999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4094 614 NIDDAAKTLVQKILENDK 631 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k 631 (663)
||+++|++|++.+.++..
T Consensus 170 gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 170 NVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987643
No 16
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-30 Score=246.51 Aligned_cols=173 Identities=31% Similarity=0.602 Sum_probs=145.9
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++||||+|+++|..++..+++.+|+
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK-RIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTE-EEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE-EEEEEEEECCCccchhhhHHHHhccCCE
Confidence 456799999999999999999999999999899999999999888888875 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|||||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.|
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 162 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENA----DDNVAVGLIGNKSDLAHLR-AVPTEESKTFAQENQL-LFTETSALNSEN 162 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHC----C--CEEEEEECCGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCCC-CCC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 999999999999999999999998653 3468999999999997655 6778889999999885 899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKVQA 634 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~~~ 634 (663)
|+++|++|++.+..+.....
T Consensus 163 i~~l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 163 VDKAFEELINTIYQKVSKHQ 182 (223)
T ss_dssp HHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 99999999999988776544
No 17
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=6e-30 Score=234.22 Aligned_cols=171 Identities=28% Similarity=0.429 Sum_probs=151.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|++|||||||+++|+++.+...+.++++.++....+.+++...+.++|||++|+++|..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 35699999999999999999999999888888899999999999998875468999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
|+|||++++.+|+.+..|+..+..+... ..+.| +|||+||+|+...+ .+..+++..++..+++ +|++|||++|.|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~~~iilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 159 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEE--SETQPLVALVGNKIDLEHMR-TIKPEKHLRFCQENGF-SSHFVSAKTGDS 159 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHH--HTCCCEEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-EEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcc--cCCCCeEEEEEEcccccccc-ccCHHHHHHHHHHcCC-cEEEEeCCCCCC
Confidence 9999999999999999999988865321 11345 89999999997765 6778899999999985 899999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy4094 615 IDDAAKTLVQKILEND 630 (663)
Q Consensus 615 VeELFe~IIr~Ile~~ 630 (663)
|+++|++|++.++...
T Consensus 160 i~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 160 VFLCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999987653
No 18
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=3e-29 Score=226.21 Aligned_cols=165 Identities=27% Similarity=0.549 Sum_probs=149.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT-TVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 45699999999999999999999999998888999999998888888775 68999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+.... ..++|+|||+||+|+...+ .+..+++.+++..+++ .|++|||++|.||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA----SPNIVIALSGNKADLANKR-AVDFQEAQSYADDNSL-LFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCcccc-ccCHHHHHHHHHHcCC-eEEEEeCCCCCCH
Confidence 99999999999999999999888652 3579999999999997655 5778889999998885 8999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4094 616 DDAAKTLVQKIL 627 (663)
Q Consensus 616 eELFe~IIr~Il 627 (663)
+++|++|++.+.
T Consensus 157 ~~l~~~i~~~~~ 168 (170)
T 1r2q_A 157 NEIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999988663
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.7e-29 Score=228.97 Aligned_cols=167 Identities=31% Similarity=0.559 Sum_probs=144.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK-RVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSC-EEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCE-EEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 346799999999999999999999999998889999999998888888876 7899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..++. .++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|.|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 155 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKIDLEKER-HVSIQEAESYAESVGA-KHYHTSAKQNKG 155 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHG----GGSEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEEEBTTTTBS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECccccccc-ccCHHHHHHHHHHcCC-eEEEecCCCCCC
Confidence 9999999999999999999998886542 458999999999997765 6778899999999985 899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy4094 615 IDDAAKTLVQKILE 628 (663)
Q Consensus 615 VeELFe~IIr~Ile 628 (663)
|+++|++|++.+++
T Consensus 156 i~~l~~~l~~~~~~ 169 (170)
T 1z08_A 156 IEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=5.4e-29 Score=228.44 Aligned_cols=168 Identities=30% Similarity=0.552 Sum_probs=150.9
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDA-TVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTE-EEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCE-EEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 456699999999999999999999999999888999999998888888775 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 161 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG----NPNMVMALAGNKSDLLDAR-KVTAEDAQTYAQENGL-FFMETSAKTATN 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-EEEECCSSSCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCcccccc-cCCHHHHHHHHHHcCC-EEEEEECCCCCC
Confidence 999999999999999999999988652 3579999999999997765 6788899999999985 899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy4094 615 IDDAAKTLVQKILEN 629 (663)
Q Consensus 615 VeELFe~IIr~Ile~ 629 (663)
|+++|++|++.+...
T Consensus 162 i~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 162 VKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887554
No 21
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=7.3e-29 Score=226.46 Aligned_cols=170 Identities=29% Similarity=0.476 Sum_probs=150.1
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.+.|||++|+++|..++..+++.+|+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGI-PARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTE-EEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCE-EEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 345699999999999999999999999998889999987766 66777765 6889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 158 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQR-QVPRSEASAFGASHHV-AYFEASAKLRLN 158 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccc-ccCHHHHHHHHHHcCC-eEEEecCCCCCC
Confidence 999999999999999999999886543 23568999999999997765 6778889999998885 899999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy4094 615 IDDAAKTLVQKILENDK 631 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k 631 (663)
|+++|++|++.+..+..
T Consensus 159 v~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 159 VDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876544
No 22
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.5e-29 Score=241.66 Aligned_cols=171 Identities=32% Similarity=0.648 Sum_probs=155.2
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++||||+|+++|..++..+++++|
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE-KVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3567799999999999999999999999999899999999999999998876 689999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++..++...++ .||+|||++|.
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~g~ 174 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGNKIDLAERR-EVSQQRAEEFSEAQDM-YYLETSAKESD 174 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-CEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 9999999999999999999999998653 3568999999999997655 6778889999998885 89999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4094 614 NIDDAAKTLVQKILENDK 631 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k 631 (663)
||+++|++|++.+..+..
T Consensus 175 gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 175 NVEKLFLDLACRLISEAR 192 (201)
T ss_dssp THHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999987654
No 23
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=236.78 Aligned_cols=170 Identities=35% Similarity=0.628 Sum_probs=145.4
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK-KIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCe-EEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 4556799999999999999999999999998889999999999999988875 688999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+.... ..++|+|||+||+|+...+ .+..+++.+++..+....|++|||++|.
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilV~NK~Dl~~~~-~v~~~~~~~~~~~~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYA----SEDAELLLVGNKLDCETDR-EITRQQGEKFAQQITGMRFCEASAKDNF 175 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccccccc-ccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 9999999999999999999998888652 3469999999999997665 6778889999988644689999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy4094 614 NIDDAAKTLVQKILEN 629 (663)
Q Consensus 614 NVeELFe~IIr~Ile~ 629 (663)
||+++|++|++.+.++
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9.7e-30 Score=238.59 Aligned_cols=172 Identities=33% Similarity=0.655 Sum_probs=156.0
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
.+.+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK-RVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT-TEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE-EEEEEEEeCCChHHHHHHHHHHHccC
Confidence 34567899999999999999999999999999999999999999888888776 68899999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
|++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++..++..+++ .||+|||++|
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 170 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQDWATQIKTYS----WDNAQVILVGNKCDMEEER-VVPTEKGQLLAEQLGF-DFFEASAKEN 170 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCC-eEEEEECCCC
Confidence 99999999999999999999999998652 3579999999999997766 6788899999999996 8999999999
Q ss_pred cCHHHHHHHHHHHHHhhhh
Q psy4094 613 INIDDAAKTLVQKILENDK 631 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~k 631 (663)
.||+++|++|++.+.++..
T Consensus 171 ~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 171 ISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp BSHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999987643
No 25
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=5.6e-29 Score=226.62 Aligned_cols=168 Identities=18% Similarity=0.259 Sum_probs=136.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc--hhhhHHHHHhcCcE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--FGNMTRVYYKEAVG 534 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--frsl~~~~~r~ADg 534 (663)
..+||+|+|++|||||||+++|++..+...+ ++.|.++....+.+++. .+.+++||++|++. +..++..+++.+|+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGE-DTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTE-EEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCE-EEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 4589999999999999999999998776543 45777887888888776 68899999999988 67788889999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~g~g 155 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTH---QADHVPIILVGNKADLARCR-EVSVEEGRACAVVFDC-KFIETSATLQHN 155 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTTC-CSCHHHHHHHHHHHTS-EEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhh---ccCCCCEEEEEEChhhcccc-ccCHHHHHHHHHHcCC-eEEEEecCCCCC
Confidence 999999999999999999998887531 23469999999999998766 6778888899998885 899999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy4094 615 IDDAAKTLVQKILENDK 631 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k 631 (663)
|+++|++|++.+..++.
T Consensus 156 i~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 156 VAELFEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876544
No 26
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=3.2e-29 Score=226.22 Aligned_cols=165 Identities=34% Similarity=0.640 Sum_probs=150.6
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE-DVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTE-EEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCE-EEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 35699999999999999999999999999899999999999998888875 68999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+..+. .++|+|||+||+|+...+ .+..+++.+++..+++ +|+++||++|.||
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDS-CIKNEEAEGLAKRLKL-RFYRTSVKEDLNV 154 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-EEEECBTTTTBSS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccCccc-ccCHHHHHHHHHHcCC-eEEEEecCCCCCH
Confidence 99999999999999999999988753 468999999999997655 5778889999999986 8999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy4094 616 DDAAKTLVQKILE 628 (663)
Q Consensus 616 eELFe~IIr~Ile 628 (663)
+++|++|++.+++
T Consensus 155 ~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 155 SEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 27
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=3.2e-29 Score=231.10 Aligned_cols=169 Identities=25% Similarity=0.339 Sum_probs=149.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQ-EYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCE-EEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 468999999999999999999999999999999998777 677777775 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..++. ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVG---KVQIPIMLVGNKKDLHMER-VISYEEGKALAESWNA-AFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-EEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccchhcc-eecHHHHHHHHHHhCC-cEEEEecCCCCCHH
Confidence 99999999999999999999876532 3568999999999997766 7889999999999996 89999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy4094 617 DAAKTLVQKILENDKV 632 (663)
Q Consensus 617 ELFe~IIr~Ile~~k~ 632 (663)
++|++|++.+..+...
T Consensus 158 ~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 158 DVFRRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999877643
No 28
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=238.48 Aligned_cols=171 Identities=20% Similarity=0.233 Sum_probs=146.7
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh-hHHHHHhcC
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-MTRVYYKEA 532 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-l~~~~~r~A 532 (663)
..+..+||+|||++|||||||+++|++..+...+.++++.++....+.+++. .+.|+|||++|++++.. ++..+++.+
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKE-EVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTE-EEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCE-EEEEEEEecCCCccchhhhHHHhhccC
Confidence 3456799999999999999999999865555456677777888888888876 78999999999998765 888999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
|++|||||++++.+|+.+..|+..+..... ..++|+||||||+|+...+ .+..+++..++..+++ .|++|||++|
T Consensus 98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~v~~~~~~~~a~~~~~-~~~e~Sa~~~ 172 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRP---HHDLPVILVGNKSDLARSR-EVSLEEGRHLAGTLSC-KHIETSAALH 172 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHST---TSCCCEEEEEECTTCTTTC-CSCHHHHHHHHHHTTC-EEEEEBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEeechhccccC-CcCHHHHHHHHHHhCC-EEEEEcCCCC
Confidence 999999999999999999999998886531 2469999999999998766 6788899999999985 8999999999
Q ss_pred cCHHHHHHHHHHHHHhhh
Q psy4094 613 INIDDAAKTLVQKILEND 630 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~~ 630 (663)
.||+++|++|++.+..++
T Consensus 173 ~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 173 HNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp BSHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999987644
No 29
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=8.7e-29 Score=233.19 Aligned_cols=172 Identities=34% Similarity=0.657 Sum_probs=155.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.+..+||+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK-RIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCe-EEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 456799999999999999999999999998889999999998888888775 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++ +||+|||++|.|
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 157 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYS----WDNAQVLLVGNKCDMEDER-VVSSERGRQLADHLGF-EFFEASAKDNIN 157 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS----CSSCEEEEEEECTTCTTSC-CSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccCccc-ccCHHHHHHHHHHCCC-eEEEEECCCCCC
Confidence 999999999999999999999988653 3468999999999998765 6778899999999985 899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKVQ 633 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~~ 633 (663)
|+++|++|++.+..+....
T Consensus 158 i~~l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 158 VKQTFERLVDVICEKMSES 176 (203)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999998765543
No 30
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=6.2e-29 Score=224.73 Aligned_cols=165 Identities=33% Similarity=0.626 Sum_probs=143.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK-KVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSC-EEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 4589999999999999999999999998899999999998888888876 689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+.. + .+..+++.+++..+++ +|++|||++|.||+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHA----NDEAQLLLVGNKSDMET-R-VVTADQGEALAKELGI-PFIESSAKNDDNVN 153 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCTT-C-CSCHHHHHHHHHHHTC-CEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCCc-C-ccCHHHHHHHHHHcCC-eEEEEECCCCCCHH
Confidence 9999999999999999999988753 24689999999999933 3 5778889999999985 89999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy4094 617 DAAKTLVQKILEN 629 (663)
Q Consensus 617 ELFe~IIr~Ile~ 629 (663)
++|++|++.+.++
T Consensus 154 ~l~~~l~~~~~~~ 166 (170)
T 1g16_A 154 EIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 31
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=1.4e-28 Score=226.60 Aligned_cols=169 Identities=28% Similarity=0.502 Sum_probs=145.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++ +.....+.+++. .+.++|||++|+++|..++..+++.+|++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTE-EEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCc-EEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 458999999999999999999999998888888876 445566667765 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..+. ...++|+|||+||+|+... .+..+++..++..+++ +|++|||++|.||+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~ 154 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNKCDLPSR--TVDTKQAQDLARSYGI-PFIETSAKTRQGVD 154 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTSSSC--SSCHHHHHHHHHHHTC-CEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccCccc--ccCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 9999999999999999999988753 2356999999999999743 5778899999999995 89999999999999
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy4094 617 DAAKTLVQKILENDKVQ 633 (663)
Q Consensus 617 ELFe~IIr~Ile~~k~~ 633 (663)
++|++|++.+..+....
T Consensus 155 ~l~~~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 155 DAFYTLVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 99999999998776543
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=9.4e-29 Score=223.55 Aligned_cols=165 Identities=30% Similarity=0.563 Sum_probs=149.9
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+.+. .+.+.|||++|+++|..++..+++++|++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE-LHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCe-EEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 45699999999999999999999999998889999999998888888775 68899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+..+ ...++|++||+||+|+...+ .+..+++..++..+++ +|++|||++|.||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCDLTDVR-EVMERDAKDYADSIHA-IFVETSAKNAINI 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECCcccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCcCH
Confidence 9999999999999999999998864 23578999999999998755 6778889999998885 8999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4094 616 DDAAKTLVQKIL 627 (663)
Q Consensus 616 eELFe~IIr~Il 627 (663)
+++|++|++.+.
T Consensus 157 ~~l~~~i~~~i~ 168 (170)
T 1z0j_A 157 NELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-28 Score=228.58 Aligned_cols=171 Identities=37% Similarity=0.588 Sum_probs=153.0
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.....+||+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN-KAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE-EEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCe-EEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 4456799999999999999999999999999999999999998888888876 689999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+..++ ...++|+|||+||+|+.. + .+..+++.+++..+++ .|++|||++|.
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYC---TRNDIVNMLVGNKIDKEN-R-EVDRNEGLKFARKHSM-LFIEASAKTCD 163 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCC---SCSCCEEEEEEECTTSSS-C-CSCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCcEEEEEECCcCcc-c-ccCHHHHHHHHHHcCC-EEEEecCCCCC
Confidence 9999999999999999999999887542 235699999999999954 2 5678889999999985 89999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy4094 614 NIDDAAKTLVQKILENDK 631 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k 631 (663)
||+++|++|++.+.....
T Consensus 164 gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp THHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999999987654
No 34
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=4.4e-29 Score=226.64 Aligned_cols=166 Identities=21% Similarity=0.233 Sum_probs=133.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh-hHHHHHhcCcEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-MTRVYYKEAVGAF 536 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-l~~~~~r~ADgaI 536 (663)
.+||+|+|++|||||||+++|++..+...+..+.+.++....+.+++. .+.+.+||++|++++.. ++..+++++|++|
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKE-EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTE-EEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCe-EEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 489999999999999999999988887777777788888888888876 78999999999999876 7888899999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..... ..++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|.||+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRP---HHDLPVILVGNKSDLARSR-EVSLEEGRHLAGTLSC-KHIETSAALHHNTR 155 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHST---TSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTBSHH
T ss_pred EEEECCChHHHHHHHHHHHHHHhccc---CCCCCEEEEeeCcchhhcc-cCCHHHHHHHHHHcCC-cEEEecCccCCCHH
Confidence 99999999999999999999887532 2469999999999998665 7888999999999996 89999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy4094 617 DAAKTLVQKILEN 629 (663)
Q Consensus 617 ELFe~IIr~Ile~ 629 (663)
++|++|++.+..+
T Consensus 156 ~l~~~l~~~i~~~ 168 (169)
T 3q85_A 156 ELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 35
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=1.1e-28 Score=232.48 Aligned_cols=165 Identities=18% Similarity=0.285 Sum_probs=142.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|++|||||||+++|+++.+...+.++.+ ++ .+.+.+++. .+.|+||||+|+++|+ +++++|++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQ-SYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTE-EEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCE-EEEEEEEECCCChhhh-----eecCCCEE
Confidence 3569999999999999999999999999888888743 44 477888876 7899999999999887 88999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
|+|||++++.+|+.+..|+..+..+. ...++|+||||||+|+.. ....+..+++.+++..++.+.||+|||++|.|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFR---NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTS---CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 99999999999999999999998532 225689999999999952 22378889999999999866899999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy4094 615 IDDAAKTLVQKILENDK 631 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k 631 (663)
|+++|++|++.+..+++
T Consensus 167 v~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 167 VERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987653
No 36
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8e-29 Score=227.13 Aligned_cols=169 Identities=31% Similarity=0.597 Sum_probs=143.2
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.+..+||+|+|+.|||||||+++|+++.+. ..+.++++.++....+.+++. .+.++|||++|+++|+.++..+++++|
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV-KVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE-EEEEEEEECCCC--------CCGGGCS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 456799999999999999999999998885 577899999998888888776 689999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 159 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYA----QHDVALMLLGNKVDSAHER-VVKREDGEKLAKEYGL-PFMETSAKTGL 159 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECCSTTSCC-CSCHHHHHHHHHHHTC-CEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccCccc-ccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 9999999999999999999999988753 2568999999999998765 6778889999999885 89999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy4094 614 NIDDAAKTLVQKILEND 630 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~ 630 (663)
||+++|++|++.+..+.
T Consensus 160 gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 160 NVDLAFTAIAKELKRRS 176 (180)
T ss_dssp THHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 37
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=6.4e-29 Score=224.06 Aligned_cols=164 Identities=31% Similarity=0.560 Sum_probs=148.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH-TVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 489999999999999999999999998889999999998888888775 6899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG--IANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der--~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|||++++.+|+.+..|+..+..+. ..++|++||+||+|+.... ..+..+++.+++..+++ .|++|||++|.||
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA----SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFETSAKTGENV 156 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECCTTTCTTH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEEEeCCCCCCH
Confidence 999999999999999999988653 3569999999999986541 36788889999998885 8999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4094 616 DDAAKTLVQKIL 627 (663)
Q Consensus 616 eELFe~IIr~Il 627 (663)
+++|++|++.+.
T Consensus 157 ~~l~~~l~~~i~ 168 (170)
T 1ek0_A 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999988664
No 38
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=8.8e-29 Score=231.21 Aligned_cols=168 Identities=33% Similarity=0.668 Sum_probs=152.7
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++.+|+
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK-RIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTE-EEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCe-EEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 456799999999999999999999999998889999999998888888775 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++ .||+|||++|.|
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 171 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYS----WDNAQVILVGNKCDLEDER-VVPAEDGRRLADDLGF-EFFEASAKENIN 171 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECccccccc-CCCHHHHHHHHHHcCC-eEEEEECCCCCC
Confidence 999999999999999999999988653 3568999999999997765 6778889999999995 899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy4094 615 IDDAAKTLVQKILEN 629 (663)
Q Consensus 615 VeELFe~IIr~Ile~ 629 (663)
|+++|++|++.+.++
T Consensus 172 i~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 172 VKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 39
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=1.6e-28 Score=225.85 Aligned_cols=167 Identities=18% Similarity=0.233 Sum_probs=141.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|++|||||||+++|+++.+.. +.+|++.. +.+.+.+++. .+.++|||++|+++ ..|++++|++|
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~-~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQ-THLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTE-EEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCE-EEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 45899999999999999999999998876 78888744 4677777775 68999999999987 46889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC--CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP--KEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~--der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|||++++.+|+.+..|+..+..... ....++|+||||||+|+. ..+ .+..+++.+++..++.++||+|||++|.|
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~~~-~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRG-EGRGGLALALVGTQDRISASSPR-VVGDARARALXADMKRCSYYETXATYGLN 155 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHC-SSSCCCEEEEEEECTTCBTTBCC-CSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccccC-cCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence 99999999999999998777665432 223579999999999994 333 67889999999887546899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKVQ 633 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~~ 633 (663)
|+++|++|++.++..++..
T Consensus 156 i~~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 156 VDRVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999999998876543
No 40
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=1.6e-28 Score=221.44 Aligned_cols=164 Identities=27% Similarity=0.480 Sum_probs=145.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQ-QCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSC-EEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCE-EEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 489999999999999999999999998888899886654 55666665 6889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+..+.. ..++|+|||+||+|+...+ .+..+++..++..++..+|++|||++|.||++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDER-VVGKEQGQNLARQWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHC---CSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTSCEEEECBTTTTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC---cCCCcEEEEEECccccccc-cCCHHHHHHHHHHccCCcEEEecCCCCCCHHH
Confidence 9999999999999999998886542 3569999999999997765 67788999999988546899999999999999
Q ss_pred HHHHHHHHHH
Q psy4094 618 AAKTLVQKIL 627 (663)
Q Consensus 618 LFe~IIr~Il 627 (663)
+|++|++.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 41
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=4.1e-29 Score=241.16 Aligned_cols=171 Identities=19% Similarity=0.334 Sum_probs=147.4
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|+++.+...+.+|++.++ ...+.+++. .+.++|||++|+++|..++..+++++|+
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQ-RVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--C-EEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCE-EEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 34569999999999999999999999999999999999776 456667665 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCC
Q psy4094 535 AFIVFDVTRAATFDA-VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFS 602 (663)
Q Consensus 535 aILVyDVTd~~SFe~-L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i 602 (663)
+|+|||++++.+|+. +..|+..+..++ .++|+||||||+|+..+ .+.+..+++.+++..+++.
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-----PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-----TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 999999999999999 789999998753 46999999999999753 2368899999999999976
Q ss_pred eEEEEeCCCCcC-HHHHHHHHHHHHHhhhhh
Q psy4094 603 GWFETSAKDNIN-IDDAAKTLVQKILENDKV 632 (663)
Q Consensus 603 ~ffEtSAKtGeN-VeELFe~IIr~Ile~~k~ 632 (663)
.|++|||++|.| |+++|++|++.++.+...
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 899999999998 999999999999876543
No 42
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=1.4e-28 Score=226.61 Aligned_cols=174 Identities=31% Similarity=0.555 Sum_probs=153.6
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeece-eEEEecCCc--------eeEEEEEEeCCCccchhhh
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHE--------TIIRLQLWDIAGQERFGNM 524 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~-~ktV~vdge--------~~vkLqIwDTpGQErfrsl 524 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.++++.++. .+.+.+++. ..+.++|||++|+++|..+
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3566799999999999999999999999998889999999887 667766643 1478999999999999999
Q ss_pred HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeE
Q psy4094 525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~f 604 (663)
+..+++++|++|+|||++++.+++.+..|+..+..+.. ..++|+|||+||+|+...+ .+..+++.+++..+++ +|
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~ 161 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY---SENPDIVLCGNKSDLEDQR-AVKEEEARELAEKYGI-PY 161 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS---SSSCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-CE
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccccccc-ccCHHHHHHHHHHcCC-CE
Confidence 99999999999999999999999999999999886532 2569999999999997765 6778899999999986 89
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~~k~ 632 (663)
++|||++|.||+++|++|++.+.++...
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999876553
No 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=8.4e-29 Score=232.24 Aligned_cols=171 Identities=23% Similarity=0.425 Sum_probs=149.8
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.....+||+|+|+.|||||||+++|+++.+...+.++++.++.. .+.+++. .+.++||||+|+++|..++..+++++|
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNE-EFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTE-EEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCE-EEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 34567999999999999999999999999988999999877754 5666665 688999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 534 GAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-r~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
++|+|||++++.+|+.+ ..|+..+..++ .++|+|||+||+|+..+ ...+..+++.+++..+++..|++|||++
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI-----DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 99999999999999997 78998888652 46999999999999753 2368889999999999975599999999
Q ss_pred CcCHHHHHHHHHHHHHhhhh
Q psy4094 612 NINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~~k 631 (663)
|.||+++|++|++.++.++.
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999987643
No 44
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=2.2e-28 Score=224.38 Aligned_cols=169 Identities=23% Similarity=0.403 Sum_probs=148.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGE-EVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTE-EEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCE-EEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 3469999999999999999999999998888888888665 445566665 68899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+..+.. ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKE---DENVPFLLVGNKSDLEDKR-QVSVEEAKNRAEQWNV-NYVETSAKTRANV 168 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHC---CTTCCEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccccccC-ccCHHHHHHHHHHcCC-eEEEeCCCCCCCH
Confidence 999999999999999999999887643 2468999999999997765 5778899999999985 8999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4094 616 DDAAKTLVQKILENDK 631 (663)
Q Consensus 616 eELFe~IIr~Ile~~k 631 (663)
+++|++|++.+..++.
T Consensus 169 ~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 169 DKVFFDLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999976543
No 45
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=4e-28 Score=223.91 Aligned_cols=164 Identities=30% Similarity=0.537 Sum_probs=147.3
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCcee----------------------------
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI---------------------------- 507 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~---------------------------- 507 (663)
+..+||+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDI-NIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCc-ccccccccccccccccccccccccccccc
Confidence 45699999999999999999999999999999999999999888888764 3
Q ss_pred ---------EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q psy4094 508 ---------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578 (663)
Q Consensus 508 ---------vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKs 578 (663)
+.+.|||++|+++|..++..+++.+|++|+|||++++.+|+.+..|+..+..+. ++|+|||+||+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~ 157 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKI 157 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECT
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECC
Confidence 789999999999999999999999999999999999999999999999988652 28999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 579 DL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
| ...+ .+..+++.+++..+++ +|++|||++|.||+++|++|++.+..+
T Consensus 158 D-~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 158 D-KNKF-QVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp T-CC-C-CSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred C-cccc-cCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9 3333 6788999999999986 899999999999999999999988764
No 46
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=8e-29 Score=235.41 Aligned_cols=172 Identities=33% Similarity=0.579 Sum_probs=143.6
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGK-TVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTE-EEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCe-eeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 3466799999999999999999999999998889999999999888888875 689999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~SA~~g~ 173 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLA----SPNIVVILCGNKKDLDPER-EVTFLEASRFAQENEL-MFLETSALTGE 173 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHT----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEEECTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCCccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 9999999999999999999999888653 2569999999999997655 6778889999999885 89999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy4094 614 NIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~k~ 632 (663)
||+++|.+|++.++.+...
T Consensus 174 gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 174 NVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp THHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999876543
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-28 Score=231.68 Aligned_cols=169 Identities=30% Similarity=0.518 Sum_probs=150.8
Q ss_pred CCCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 453 ~~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
..++..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE-LHKFLIWDTAGQERFHSLAPMYYRGS 96 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSS-EEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCE-EEEEEEEcCCCchhhHhhhHHhhccC
Confidence 44567899999999999999999999999998889999999998888888766 68999999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG 612 (663)
|++|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++.+++..+++ +|++|||++|
T Consensus 97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 170 (192)
T 2fg5_A 97 AAAVIVYDITKQDSFYTLKKWVKELKEHG----PENIVMAIAGNKCDLSDIR-EVPLKDAKEYAESIGA-IVVETSAKNA 170 (192)
T ss_dssp SEEEEEEETTCTHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHTTTC-EEEECBTTTT
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 99999999999999999999999998653 3569999999999997655 6778899999999885 8999999999
Q ss_pred cCHHHHHHHHHHHHHh
Q psy4094 613 INIDDAAKTLVQKILE 628 (663)
Q Consensus 613 eNVeELFe~IIr~Ile 628 (663)
.||+++|++|++.+..
T Consensus 171 ~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 171 INIEELFQGISRQIPP 186 (192)
T ss_dssp BSHHHHHHHHHHTCC-
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999987754
No 48
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=1e-28 Score=225.07 Aligned_cols=165 Identities=32% Similarity=0.558 Sum_probs=149.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|++|
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTE-EEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCe-EEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4589999999999999999999999999999999999999999988876 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||+
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER----GSDVIIMLVGNKTDLSDKR-QVSTEEGERKAKELNV-MFIETSAKAGYNVK 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECGGGGGGC-CSCHHHHHHHHHHHTC-EEEEEBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCcccccC-cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 9999999999999999999888653 2468999999999997665 6778889999999885 89999999999999
Q ss_pred HHHHHHHHHHHh
Q psy4094 617 DAAKTLVQKILE 628 (663)
Q Consensus 617 ELFe~IIr~Ile 628 (663)
++|++|++.+..
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 49
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=232.26 Aligned_cols=171 Identities=22% Similarity=0.341 Sum_probs=140.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGR-PVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTE-EEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCE-EEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 44569999999999999999999999988888888887555 456666665 6889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCC
Q psy4094 535 AFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFS 602 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i 602 (663)
+|+|||++++.+|+.+. .|+..+..++ .++|+|||+||+|+... ...+..+++..++..+++.
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-----PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAA 169 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-----SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 99999999999999997 7999888653 36999999999999753 2367888999999999876
Q ss_pred eEEEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094 603 GWFETSAKDNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 603 ~ffEtSAKtGeNVeELFe~IIr~Ile~~k~ 632 (663)
.|++|||++|.||+++|++|++.++.....
T Consensus 170 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 170 SYIECSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999876543
No 50
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=3.5e-28 Score=218.26 Aligned_cols=164 Identities=24% Similarity=0.425 Sum_probs=142.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGE-EVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCE-EEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 48999999999999999999999998888888888665 345566665 6889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+..+.. ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKE---DENVPFLLVGNKSDLEDKR-QVSVEEAKNRADQWNV-NYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHC---CTTSCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTC-EEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEECccccccC-ccCHHHHHHHHHHcCC-eEEEeCCCCCCCHHH
Confidence 9999999999999999999887643 2468999999999997765 5778899999999985 899999999999999
Q ss_pred HHHHHHHHHHh
Q psy4094 618 AAKTLVQKILE 628 (663)
Q Consensus 618 LFe~IIr~Ile 628 (663)
+|++|++.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 51
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=1.9e-28 Score=221.85 Aligned_cols=164 Identities=20% Similarity=0.243 Sum_probs=120.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|++|||||||+++|++..+. ...++.+..+ ...+.+++. .+.+.+||++|+++|+.++..+++.+|++|+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGE-EASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTE-EEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCE-EEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 489999999999999999999876554 3344555444 456666765 7899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+... ....++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRA---RQTDDVPIILVGNKSDLVRSR-EVSVDEGRACAVVFDC-KFIETSAALHHNVQA 153 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHC---C---CCCEEEEEECTTCCSSC-CSCHHHHHHHHHHTTC-EEEECBGGGTBSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEecccccccc-ccCHHHHHHHHHHhCC-cEEEeccCCCCCHHH
Confidence 99999999999999999988753 234579999999999998766 7888899999999985 899999999999999
Q ss_pred HHHHHHHHHHhh
Q psy4094 618 AAKTLVQKILEN 629 (663)
Q Consensus 618 LFe~IIr~Ile~ 629 (663)
+|++|++.+..+
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988765
No 52
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-28 Score=230.04 Aligned_cols=167 Identities=26% Similarity=0.410 Sum_probs=143.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..++|+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.+.||||+|+++|..++..+++.+|++|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKS-VCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTE-EEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCE-EEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4589999999999999999999999998888888875554 44555654 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||++++.+|+.+..|+..+..... ...++|+|||+||+|+... .+..+++..++..+++ .||+|||++|.||+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKG--SVEDIPVMLVGNKCDETQR--EVDTREAQAVAQEWKC-AFMETSAKMNYNVK 159 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHS--CGGGSCEEEEEECTTCSSC--SSCHHHHHHHHHHHTC-EEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccCCcc--ccCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Confidence 99999999999999999887776432 1246899999999999762 5678888999999885 89999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy4094 617 DAAKTLVQKILEND 630 (663)
Q Consensus 617 ELFe~IIr~Ile~~ 630 (663)
++|++|++.+..+.
T Consensus 160 ~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 160 ELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999876554
No 53
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.6e-28 Score=228.39 Aligned_cols=166 Identities=22% Similarity=0.343 Sum_probs=147.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|+.++..+++++|++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGK-QYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSC-EEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCE-EEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 4679999999999999999999999999888889988665 556677665 68999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCe
Q psy4094 536 FIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSG 603 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ 603 (663)
|+|||++++.+|+.+. .|+..+..++ .++|+|||+||+|+... .+.+..+++.+++..+++..
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-----PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 9999999999999997 8999988752 36999999999999763 13678899999999999768
Q ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 604 WFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 604 ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
|++|||++|.||+++|++|++.++.
T Consensus 169 ~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 169 YVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999998863
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=232.10 Aligned_cols=167 Identities=32% Similarity=0.504 Sum_probs=138.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.++|||++|+++|..++..+++++|++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGE-RTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTE-EEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCE-EEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45699999999999999999999999998889999999998888888876 68899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-----CCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-----EGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-----er~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
|+|||++++.+|+.+..|+..+.... ..++|+|||+||+|+.. ....+..+++..++..+++ .|++|||+
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~SA~ 179 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAA----HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA-LFCETSAK 179 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC-EEEECCTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC-eEEEeeCC
Confidence 99999999999999999999888652 24689999999999962 2236788899999999986 89999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q psy4094 611 DNINIDDAAKTLVQKILE 628 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile 628 (663)
+|.||+++|.+|++.+..
T Consensus 180 ~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TCTTHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998854
No 55
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=2.1e-28 Score=228.68 Aligned_cols=167 Identities=35% Similarity=0.593 Sum_probs=147.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh-hhHHHHHhcCcE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG-NMTRVYYKEAVG 534 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr-sl~~~~~r~ADg 534 (663)
...+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|+ .++..+++++|+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGE-RIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTE-EEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCE-EEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 35699999999999999999999999999899999999999999988875 6899999999999998 899999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCC--
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN-- 612 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtG-- 612 (663)
+|+|||++++.+|+.+..|+..+..++. ..++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 171 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLL---ANDIPRILVGNKCDLRSAI-QVPTDLAQKFADTHSM-PLFETSAKNPND 171 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCC---CSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-CEEECCSSSGGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccccccc-eeCHHHHHHHHHHcCC-EEEEEeCCcCCc
Confidence 9999999999999999999999987642 3569999999999997665 6778889999999985 8999999999
Q ss_pred -cCHHHHHHHHHHHHHh
Q psy4094 613 -INIDDAAKTLVQKILE 628 (663)
Q Consensus 613 -eNVeELFe~IIr~Ile 628 (663)
.||+++|.+|++.+.+
T Consensus 172 ~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GSCHHHHHHHHC-----
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 9999999999988753
No 56
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=7.1e-29 Score=235.82 Aligned_cols=169 Identities=25% Similarity=0.416 Sum_probs=145.0
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|+.++..+++++|++|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQ-IVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSC-EEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCE-EEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 469999999999999999999999999888889988555 456667665 689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-------CCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-------ANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-------~Vs~eei~qlak~~g~i~ffEtS 608 (663)
+|||++++.+|+.+. .|+..+..+. .++|+|||+||+|+...+. .+..+++.+++..+++..||+||
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 999999999999997 8999998652 3699999999999866431 24788899999999976899999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094 609 AKDNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile~~k~ 632 (663)
|++|.||+++|++|++.++.....
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC---
T ss_pred CCCCCCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999876543
No 57
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=1.4e-28 Score=229.50 Aligned_cols=166 Identities=22% Similarity=0.401 Sum_probs=146.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++++|++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQ-RIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSC-EEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCE-EEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 4569999999999999999999999999888899998776 455666665 68999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCe
Q psy4094 536 FIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSG 603 (663)
Q Consensus 536 ILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~ 603 (663)
|+|||++++.+|+.+ ..|+..+..++ .++|+|||+||+|+..+ .+.+..+++.+++..++...
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 999999999999999 79999888653 46899999999999742 23678899999999988668
Q ss_pred EEEEeCC-CCcCHHHHHHHHHHHHHh
Q psy4094 604 WFETSAK-DNINIDDAAKTLVQKILE 628 (663)
Q Consensus 604 ffEtSAK-tGeNVeELFe~IIr~Ile 628 (663)
|++|||+ ++.||+++|++|++.++.
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999998875
No 58
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=230.65 Aligned_cols=167 Identities=20% Similarity=0.293 Sum_probs=142.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+...+.+|++.++ ...+.+++. .+.++|||++|+++|+.+ ..+++.+|++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQ-PVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCE-EEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 4569999999999999999999999999999999998776 445666665 689999999999999876 6799999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC-CCCcC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA-KDNIN 614 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA-KtGeN 614 (663)
|+|||++++.+|+.+..|+..+..++.. ...++|+|||+||+|+...+ .+..+++.+++..+++ .|++||| ++|.|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQYR-QVTKAEGVALAGRFGC-LFFEVSACLDFEH 172 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGGC-SSCHHHHHHHHHHHTC-EEEECCSSSCSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhcC-ccCHHHHHHHHHHcCC-cEEEEeecCcccc
Confidence 9999999999999999999998865311 11468999999999997665 6788999999999996 8999999 89999
Q ss_pred HHHHHHHHHHHHHh
Q psy4094 615 IDDAAKTLVQKILE 628 (663)
Q Consensus 615 VeELFe~IIr~Ile 628 (663)
|+++|++|++.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998854
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=1.9e-28 Score=233.62 Aligned_cols=174 Identities=33% Similarity=0.617 Sum_probs=152.5
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce---------eEEEEEEeCCCccchhhh
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET---------IIRLQLWDIAGQERFGNM 524 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~---------~vkLqIwDTpGQErfrsl 524 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.++++.++..+.+.+++.. .+.++|||++|+++|..+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 45678999999999999999999999999988899999999988887776531 478999999999999999
Q ss_pred HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeE
Q psy4094 525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~f 604 (663)
+..+++++|++|||||++++.+|+.+..|+..+..+ ....++|+|||+||+|+...+ .+..+++.+++..+++ .|
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~---~~~~~~piilV~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~ 175 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCENPDIVLIGNKADLPDQR-EVNERQARELADKYGI-PY 175 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC---CTTTCCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-CE
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCCEEEEEECCcccccc-ccCHHHHHHHHHHCCC-cE
Confidence 999999999999999999999999999998876632 122579999999999997765 6778899999999985 79
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhhhhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILENDKV 632 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~~k~ 632 (663)
|+|||++|.||+++|++|++.+..+...
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999876553
No 60
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.96 E-value=1.1e-28 Score=228.44 Aligned_cols=167 Identities=18% Similarity=0.213 Sum_probs=141.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-----------cccceeeeceeEEE-ecCCceeEEEEEEeCCCccchh
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPH-----------YRATIGVDFALKVL-SWDHETIIRLQLWDIAGQERFG 522 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee-----------~~~TigiDf~~ktV-~vdge~~vkLqIwDTpGQErfr 522 (663)
....+||+|+|++|||||||++ ++.+.+... +.++++.++....+ .+++. .+.++||||+|+++|+
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF-KTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSC-EEEEEEEECCSCCSCS
T ss_pred cccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCC-ceEEEEEeCCChHHHH
Confidence 4567999999999999999995 555555555 34688888877776 56665 7899999999999999
Q ss_pred hhHHHHHhcCcEEEEEEeCC------CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy4094 523 NMTRVYYKEAVGAFIVFDVT------RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI 596 (663)
Q Consensus 523 sl~~~~~r~ADgaILVyDVT------d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla 596 (663)
.++..+++++|++|+|||++ +..+|+.+..|+..+.. ...++|+|||+||+|+... +..+++.+++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~~---~~~~~~~~~~ 160 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPDA---LPVEMVRAVV 160 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTTC---CCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhcccc---cCHHHHHHHH
Confidence 99999999999999999999 56778888888877642 3467999999999999763 6889999999
Q ss_pred HHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 597 KEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 597 k~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
..+++..|++|||++|.||+++|++|++.+..+..
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99986589999999999999999999999987654
No 61
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.3e-28 Score=228.41 Aligned_cols=170 Identities=33% Similarity=0.604 Sum_probs=151.1
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.+..++|+|+|+.|||||||+++|++..+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++.+|+
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK-KVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTE-EEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCE-EEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 345699999999999999999999999998899999999999888888875 6889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..+. ..++|+|||+||+|+. .+ .+..+++..++..+++ +||+|||++|.|
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~-~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 168 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHA----NDEAQLLLVGNKSDME-TR-VVTADQGEALAKELGI-PFIESSAKNDDN 168 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHT----TTCSEEEEEEECTTCS-SC-CSCHHHHHHHHHHHTC-CEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCc-cc-ccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 999999999999999999999988653 2468999999999993 33 5778888999999885 899999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKV 632 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~ 632 (663)
|+++|.+|++.+.++...
T Consensus 169 i~~l~~~l~~~~~~~~~~ 186 (213)
T 3cph_A 169 VNEIFFTLAKLIQEKIDS 186 (213)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999998876543
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=4e-28 Score=217.66 Aligned_cols=164 Identities=24% Similarity=0.403 Sum_probs=145.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++++|++|+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSS-PSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCE-EEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 48999999999999999999999998888888887444 666777765 6789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+...+. ..++|+|||+||+|+...+ .+..+++..++..+++ +|++|||++|.||++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKR---YEKVPVILVGNKVDLESER-EVSSSEGRALAEEWGC-PFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTT---TSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTS-CEEEECTTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcccccc-cCCHHHHHHHHHHhCC-CEEEecCCCCcCHHH
Confidence 9999999999999999998886532 3569999999999997655 6778889999999885 899999999999999
Q ss_pred HHHHHHHHHHh
Q psy4094 618 AAKTLVQKILE 628 (663)
Q Consensus 618 LFe~IIr~Ile 628 (663)
+|++|++.+.+
T Consensus 156 l~~~l~~~~~~ 166 (167)
T 1kao_A 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998753
No 63
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=2.5e-28 Score=235.00 Aligned_cols=168 Identities=22% Similarity=0.401 Sum_probs=146.6
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.++++.++ ...+.+++. .+.++|||++|+++|..++..+++++|
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQ-RIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSS-EEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCE-EEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 345679999999999999999999999999988899998776 456667665 689999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCC
Q psy4094 534 GAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNF 601 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~ 601 (663)
++|+|||++++.+|+.+ ..|+..+..++ .++|+||||||+|+..+ .+.+..+++.++++.++.
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA 176 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCC
Confidence 99999999999999999 79999888653 46999999999999742 236788899999999886
Q ss_pred CeEEEEeCC-CCcCHHHHHHHHHHHHHh
Q psy4094 602 SGWFETSAK-DNINIDDAAKTLVQKILE 628 (663)
Q Consensus 602 i~ffEtSAK-tGeNVeELFe~IIr~Ile 628 (663)
..|++|||+ +|.||+++|++|++.++.
T Consensus 177 ~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 177 ATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 689999999 689999999999998875
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3.3e-28 Score=238.38 Aligned_cols=168 Identities=19% Similarity=0.252 Sum_probs=140.6
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCC--CCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-hhhhHHHHHhc
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFF--SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-FGNMTRVYYKE 531 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~f--see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-frsl~~~~~r~ 531 (663)
....+||+|||++|||||||+++|++... ... .+++|.+++.+.+.+++. .+.+.+|||+|++. ++.+...|++.
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~-~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGE-SATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTE-EEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCe-eeEEEEeecCCCcchhhhHHHHHHhh
Confidence 44569999999999999999999997443 333 345788888888888876 78899999999987 66777888899
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
+|++|+|||++++.+|+.+..|+..+.... ...++|+||||||+||...+ .+..+++..++..+++ .||+|||++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~---~~~~~piilVgNK~DL~~~r-~v~~~e~~~~a~~~~~-~~~e~SAk~ 186 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRCR-EVSVSEGRACAVVFDC-KFIETSAAV 186 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSG---GGTTSCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCcEEEEEEChHHhcCc-eEeHHHHHHHHHHcCC-EEEEEeCCC
Confidence 999999999999999999999998887421 12469999999999997655 6778888889988885 899999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
|.||+++|++|++.+..+
T Consensus 187 g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 187 QHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988654
No 65
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=231.43 Aligned_cols=169 Identities=22% Similarity=0.354 Sum_probs=145.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++|..++..+++.+|++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKD-EFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCE-EEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 3569999999999999999999999999999999998777 666666655 68899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||++++.+|+.+..|+..+..+. ...++|+|||+||+|+...+ .+..+++..++..+++ +||+|||++|.||
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 174 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGH---GKTRVPVVLVGNKADLSPER-EVQAVEGKKLAESWGA-TFMESSARENQLT 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGGC-CSCHHHHHHHHHHHTC-EEEECCTTCHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccCcccc-ccCHHHHHHHHHHhCC-eEEEEeCCCCCCH
Confidence 99999999999999999999988542 23568999999999998766 6788899999999996 8999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4094 616 DDAAKTLVQKILENDK 631 (663)
Q Consensus 616 eELFe~IIr~Ile~~k 631 (663)
+++|++|++.+.....
T Consensus 175 ~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 175 QGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999977644
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=6.3e-28 Score=221.73 Aligned_cols=166 Identities=22% Similarity=0.348 Sum_probs=145.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK-PVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTE-EEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCE-EEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 358999999999999999999999999888888887554 455666665 689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeE
Q psy4094 537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~f 604 (663)
+|||++++.+|+.+. .|+..+..++ .++|+|||+||+|+... ...+..+++..++..+++.+|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-----TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-----CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 999999999999997 7999888652 36899999999998653 136788899999999987689
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
++|||++|.||+++|++|++.++..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred EEecCCCccCHHHHHHHHHHHHhcc
Confidence 9999999999999999999988654
No 67
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.95 E-value=1.2e-27 Score=227.22 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=137.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCC--CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc-hhhhHHHHHhcCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQF--FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-FGNMTRVYYKEAV 533 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~--fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-frsl~~~~~r~AD 533 (663)
..+||+|||++|||||||+++|++.. +... ..++|.++..+.+.+++. .+.+.+|||+|++. ++.++..|++.+|
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGE-SATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTE-EEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCe-EEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 45899999999999999999999633 3333 345778888888888876 78899999999886 6677888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+...+ .+..+++..++..+++ .|++|||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~r-~v~~~~~~~~a~~~~~-~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRXR-EVSVSEGRAXAVVFDX-KFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCeEEEEEechhhhccc-cccHHHHHHHHHHhCC-ceEEeccccCC
Confidence 9999999999999999999998887542 23468999999999997655 6777888888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy4094 614 NIDDAAKTLVQKILEND 630 (663)
Q Consensus 614 NVeELFe~IIr~Ile~~ 630 (663)
||+++|++|++.+..+.
T Consensus 158 ~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 158 NVKELFEGIVRQVRLRR 174 (192)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 99999999999986544
No 68
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-27 Score=223.93 Aligned_cols=167 Identities=22% Similarity=0.346 Sum_probs=147.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.|||++|+++ ..++..+++.+|++|
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDE-VVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCE-EEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 458999999999999999999999999888999988665 455666665 68899999999998 888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc-CH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI-NI 615 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe-NV 615 (663)
+|||++++.+|+.+..|+..+..+.. ..++|+|||+||+|+...+ .+..+++..++..+++ +||+|||++|. ||
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKK---PKNVTLILVGNKADLDHSR-QVSTEEGEKLATELAC-AFYECSACTGEGNI 178 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHT---TSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTS-EEEECCTTTCTTCH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhC---CCCCcEEEEEECccccccc-ccCHHHHHHHHHHhCC-eEEEECCCcCCcCH
Confidence 99999999999999999998887532 3568999999999997765 6788899999999885 89999999999 99
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4094 616 DDAAKTLVQKILENDK 631 (663)
Q Consensus 616 eELFe~IIr~Ile~~k 631 (663)
+++|++|++.+.+++.
T Consensus 179 ~~l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 179 TEIFYELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999977543
No 69
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=2.7e-28 Score=228.53 Aligned_cols=173 Identities=23% Similarity=0.396 Sum_probs=112.8
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC--CCCCccccceeeeceeEEEecCCce-eEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ--FFSPHYRATIGVDFALKVLSWDHET-IIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~--~fsee~~~TigiDf~~ktV~vdge~-~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
...+||+|+|+.|||||||+++|+++ .+...+.+|++.++....+.+++.. .+.+.|||++|+++|..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45689999999999999999999998 8888899999999999999888631 47899999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-EGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-er~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
|++|+|||++++.+|+.+..|+..+..+... ...++|+|||+||+|+.. .+ .+..+++..++..+++ .|++|||++
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~ 174 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPD-RERPLRAVLVANKTDLPPQRH-QVRLDMAQDWATTNTL-DFFDVSANP 174 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC-TTSCCEEEEEEECC--------CCCHHHHHHHHHHTTC-EEEECCC--
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc-cccCCcEEEEEECcccchhhc-cCCHHHHHHHHHHcCC-EEEEeccCC
Confidence 9999999999999999999999999875320 024699999999999987 55 6788999999999995 899999999
Q ss_pred -CcCHHHHHHHHHHHHHhhhh
Q psy4094 612 -NINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 612 -GeNVeELFe~IIr~Ile~~k 631 (663)
|.||+++|++|++.+..+..
T Consensus 175 ~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 175 PGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp -----CHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 70
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.95 E-value=1.7e-28 Score=225.31 Aligned_cols=164 Identities=23% Similarity=0.402 Sum_probs=129.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGA-TVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCE-EEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4589999999999999999999999988888888886553 33455554 578999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC---------CCCHHHHHHHHHHcCCCeEEE
Q psy4094 537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI---------ANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~---------~Vs~eei~qlak~~g~i~ffE 606 (663)
+|||++++.+|+.+. .|+..+..++ .++|+|||+||+|+...+. .+..+++.+++..+++.+|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA-----PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999997 7999988753 3699999999999866431 257788999999999768999
Q ss_pred EeCCCCcCHHHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Il 627 (663)
|||++|.||+++|++|++.++
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999875
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-27 Score=215.72 Aligned_cols=165 Identities=25% Similarity=0.421 Sum_probs=141.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|+.|||||||+++|+++.+...+.++++..+. ..+.+++. .+.+.|||++|+++|..++..+++.+|++|+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKS-ICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTE-EEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCE-EEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 489999999999999999999999988888888876553 44555554 6889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||++++.+|+.+..|+..+..+.. ...++|+|||+||+|+...+ .+...++..++..+++ +|++|||++|.||++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~pii~v~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKG--DVESIPIMLVGNKCDESPSR-EVQSSEAEALARTWKC-AFMETSAKLNHNVKE 156 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGGC-CSCHHHHHHHHHHHTC-EEEECBTTTTBSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCCCEEEEEEcccccccc-ccCHHHHHHHHHHhCC-eEEEecCCCCcCHHH
Confidence 9999999999999999988876532 22468999999999997655 5677888899998885 899999999999999
Q ss_pred HHHHHHHHHHh
Q psy4094 618 AAKTLVQKILE 628 (663)
Q Consensus 618 LFe~IIr~Ile 628 (663)
+|++|++.+..
T Consensus 157 l~~~l~~~~~~ 167 (172)
T 2erx_A 157 LFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHTCCS
T ss_pred HHHHHHHHHhh
Confidence 99999986643
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=3.5e-27 Score=223.82 Aligned_cols=165 Identities=19% Similarity=0.381 Sum_probs=145.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++.++.. .+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGK-QVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTE-EEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCE-EEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 46899999999999999999999999988889999877754 4666665 689999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094 537 IVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 537 LVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f 604 (663)
+|||++++.+|+.+ ..|+..+..++ .++|+|||+||+|+.... ..+..+++..++..+++..|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 99999999999999 68988887642 368999999999997641 25778899999999997689
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile 628 (663)
++|||++|.||+++|++|++.+++
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998764
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=1.2e-26 Score=207.22 Aligned_cols=163 Identities=26% Similarity=0.461 Sum_probs=143.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.+||++|+++|..++..+++.+|++|+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCE-EEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 47999999999999999999999988888888877544 555666665 6889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeE 617 (663)
|||+++..+|+.+..|+..+..+.. ..++|++||+||+|+.. + .+..+++.+++..+++ +++++||++|.|+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~---~~~~p~iiv~nK~Dl~~-~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKD---SDDVPMVLVGNKSDLAA-R-TVESRQAQDLARSYGI-PYIETSAKTRQGVED 154 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHT---CSCCCEEEEEECTTCSC-C-CSCHHHHHHHHHHHTC-CEEEECTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEEchhhhh-c-ccCHHHHHHHHHHcCC-eEEEecCCCCCCHHH
Confidence 9999999999999999999887542 24689999999999976 2 5678889999999985 899999999999999
Q ss_pred HHHHHHHHHHh
Q psy4094 618 AAKTLVQKILE 628 (663)
Q Consensus 618 LFe~IIr~Ile 628 (663)
+|++|++.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998854
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=228.59 Aligned_cols=167 Identities=22% Similarity=0.428 Sum_probs=125.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.+.||||+|+++|..++..+++++|++|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGK-PVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTE-EEEEEEEEC---------------CEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCE-EEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 468999999999999999999999988888888887554 455666665 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094 537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f 604 (663)
+|||++++.+|+.+. .|+..+..++ .++|+|||+||+|+...+ ..+..+++..++..+++..|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 999999999999997 7999888653 468999999999997642 25778889999999997689
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
++|||++|.||+++|++|++.++...
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998654
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=1.8e-27 Score=226.99 Aligned_cols=173 Identities=33% Similarity=0.495 Sum_probs=149.9
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|+++.+...+.++++..+....+...+...+.+.||||+|++++..++..+++++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 44679999999999999999999999999888889998888777777665545889999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+...+. .++|+|||+||+|+...+ .+..+++..++...++ .||+|||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~g~g 161 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVG----NEAPIVVCANKIDIKNRQ-KISKKLVMEVLKGKNY-EYFEISAKTAHN 161 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC----SSSCEEEEEECTTCC-----CCHHHHHHHTTTCCC-EEEEEBTTTTBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCcccc-ccCHHHHHHHHHHcCC-cEEEEecCCCCC
Confidence 9999999999999999999999987642 458999999999998765 6788888888888885 899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKVQ 633 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~~ 633 (663)
|+++|++|++.+..+....
T Consensus 162 v~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 162 FGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp TTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 9999999999998876543
No 76
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=2.7e-29 Score=237.49 Aligned_cols=169 Identities=34% Similarity=0.675 Sum_probs=142.1
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
..+..+||+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.+.|||++|+++|..++..+++++|
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK-TIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTE-EEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCE-EEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 3456799999999999999999999999999999999999999999998876 688999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCc
Q psy4094 534 GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI 613 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGe 613 (663)
++|+|||++++.+|+.+..|+..+..+ ...++|+|||+||+|+...+ .+..+++..++..+++ +||+|||++|.
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ilv~nK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~vSA~~g~ 181 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRY----ASENVNKLLVGNKCDLTTKK-VVDYTTAKEFADSLGI-PFLETSAKNAT 181 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSC----C-CCSEEEEC-CCSSCC--C-CCCSCC-CHHHHTTTC-CBCCCCC---H
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh----ccCCCCEEEEEECccCCccc-cCCHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 999999999999999999999998743 23579999999999998765 5666778889998885 79999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy4094 614 NIDDAAKTLVQKILEN 629 (663)
Q Consensus 614 NVeELFe~IIr~Ile~ 629 (663)
||+++|++|++.+..+
T Consensus 182 gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877654
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=6.9e-27 Score=222.76 Aligned_cols=166 Identities=21% Similarity=0.374 Sum_probs=139.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++.++... +.+++. .+.+.||||+|+++|..++..+++++|++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGK-QVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTE-EEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCE-EEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 458999999999999999999999999888888888766543 566665 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094 537 IVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 537 LVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f 604 (663)
+|||++++.+|+.+ ..|+..+...+ .++|+|||+||+|+.... ..+..+++..++...++..|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 99999999999999 68998888642 468999999999996541 25778889999999987689
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
++|||++|.||+++|++|++.++..
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=2.6e-27 Score=226.14 Aligned_cols=163 Identities=22% Similarity=0.335 Sum_probs=142.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++ +.....+.+++. .+.++||||+|+++|..++..+++++|++|
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGK-PVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-C-EEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCE-EEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 458999999999999999999999999888888887 445666777766 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094 537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f 604 (663)
+|||++++.+|+.+. .|+..+.... .++|+|||+||+|+...+ ..+..+++..++..+++.+|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence 999999999999997 8999888652 469999999999986543 13778899999999998789
Q ss_pred EEEeCCCCcCHHHHHHHHHHHH
Q psy4094 605 FETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~I 626 (663)
++|||++|.||+++|++|++.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHHTT
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998865
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.95 E-value=1.3e-26 Score=216.26 Aligned_cols=169 Identities=19% Similarity=0.311 Sum_probs=131.4
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcC
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEA 532 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~A 532 (663)
.....+||+|+|+.|||||||+++|+++.+.. .+.+|++..+ ..+... .+.++||||+|+++|+.++..+++++
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKG---RVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEET---TEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeC---CEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 34566899999999999999999999999988 8888888444 334332 47899999999999999999999999
Q ss_pred cEEEEEEeCCCcccHHHHHHHHHHHHhhcCC----CCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH------HHcCCC
Q psy4094 533 VGAFIVFDVTRAATFDAVLKWKQDLDAKVTL----PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI------KEHNFS 602 (663)
Q Consensus 533 DgaILVyDVTd~~SFe~L~~wieeL~~~~~~----~~~~~IPIILVGNKsDL~der~~Vs~eei~qla------k~~g~i 602 (663)
|++|+|||++++.+|+.+..|+..+...... ....++|+|||+||+|+.... ..+++.... ...+ +
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~-~ 163 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK---TAAELVEILDLTTLMGDHP-F 163 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHHHTHHHHHTTSC-E
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC---CHHHHHHHhcchhhccCCe-e
Confidence 9999999999999999999999888743110 011369999999999997753 233332222 2244 5
Q ss_pred eEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 603 GWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 603 ~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
.||+|||++|.||+++|++|++.+..+..
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999987654
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=1.3e-27 Score=229.57 Aligned_cols=168 Identities=33% Similarity=0.566 Sum_probs=149.2
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
....+||+|+|+.|||||||+++|+.+.+...+.+++|.++....+.+++. .+.+.||||+|+++|..++..+++++|+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-PIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTE-EEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 456699999999999999999998888888888999999998888888876 6899999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||++++.+|+.+..|+..+..++ .++|+|||+||+|+.... + ..++..++...++ .||+|||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~--~-~~~~~~~~~~~~~-~~~~~Sa~~~~g 161 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRK--V-KAKSIVFHRKKNL-QYYDISAKSNYN 161 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-----TTCCEEEEEECTTSSSCS--S-CGGGCCHHHHHTC-EEEECBGGGTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECCcccccc--c-cHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 999999999999999999999998763 368999999999997654 2 2356678888885 899999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy4094 615 IDDAAKTLVQKILENDKV 632 (663)
Q Consensus 615 VeELFe~IIr~Ile~~k~ 632 (663)
|+++|.+|++.+......
T Consensus 162 i~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp TTHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 999999999999877653
No 81
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=2.8e-26 Score=213.48 Aligned_cols=167 Identities=28% Similarity=0.483 Sum_probs=135.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+..+++..+ ...+.+++. .+.+.|||++|+++|..++..+++.+|++|
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTE-EEEEEEEECCC-----------CTTCSEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCE-EEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 458999999999999999999999988888888877554 455666665 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVe 616 (663)
+|||+++..+|+.+..|+..+..+.. ..++|+|||+||+|+.. + .+..+++.+++..+++ +|++|||++|.|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~-~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKD---SDDVPMVLVGNKCDLPT-R-TVDTKQAHELAKSYGI-PFIETSAKTRQGVE 171 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHT---CSCCCEEEEEECTTCSC-C-CSCHHHHHHHHHHHTC-CEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC---CCCCeEEEEEECCcCCc-c-cCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 99999999999999999998887542 24689999999999976 2 5678899999999996 89999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy4094 617 DAAKTLVQKILENDK 631 (663)
Q Consensus 617 ELFe~IIr~Ile~~k 631 (663)
++|++|++.+..++.
T Consensus 172 ~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 172 DAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876543
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=4.3e-26 Score=205.96 Aligned_cols=158 Identities=22% Similarity=0.324 Sum_probs=125.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEE
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIV 538 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILV 538 (663)
+||+|+|+.|||||||+++|+++.+.. +.+|++ +....+.+.+ +.++|||++|+++|+.++..+++++|++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 74 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN---ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 74 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS---CEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC---EEEEEEEcCCChhhHHHHHHHhccCCEEEEE
Confidence 589999999999999999999887764 566766 4444555543 6899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCCCCc
Q psy4094 539 FDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAKDNI 613 (663)
Q Consensus 539 yDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAKtGe 613 (663)
||++++.+|+.+..|+..+... ....++|+|||+||+|+.... ..+++...... .+ .+|++|||++|.
T Consensus 75 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 75 VDSNDRERVNEAREELMRMLAE---DELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRN-WYIQATCATSGD 147 (164)
T ss_dssp EETTCGGGHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCC-EEEEECBTTTTB
T ss_pred EECCCHHHHHHHHHHHHHHHhc---hhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCcccccCcc-EEEEEcccCCCc
Confidence 9999999999999999887642 123568999999999997642 33333322211 22 369999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy4094 614 NIDDAAKTLVQKILEN 629 (663)
Q Consensus 614 NVeELFe~IIr~Ile~ 629 (663)
||+++|++|++.+..+
T Consensus 148 gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 148 GLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp THHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999987543
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=1.9e-25 Score=211.59 Aligned_cols=169 Identities=33% Similarity=0.646 Sum_probs=148.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
++.+||+|||+.|||||||+++|++..+...+.+++|.++....+.+++. .+.+.|||++|+++|+.++..+++.++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~-~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-TIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE-EEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 45699999999999999999999999998889999999998888998886 68899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
|+|||+++..+|+.+..|+..+.... ..+.|+++|+||+|+...+ .+..++++.++...++ .|++|||+++.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~~~~-~~~d~Sal~~~~i 155 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEKNNL-SFIETSALDSTNV 155 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc----CCCCeEEEEEECccccccc-CcCHHHHHHHHHHcCC-eEEEEeCCCCCCH
Confidence 99999999999999999998876542 2468999999999997655 5677889999999885 7999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy4094 616 DDAAKTLVQKILENDK 631 (663)
Q Consensus 616 eELFe~IIr~Ile~~k 631 (663)
+++|++|.+.+.....
T Consensus 156 ~~l~~~l~~~~~~~~~ 171 (199)
T 2f9l_A 156 EEAFKNILTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987543
No 84
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.94 E-value=6.6e-26 Score=212.12 Aligned_cols=161 Identities=21% Similarity=0.293 Sum_probs=127.1
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|++|||||||+++|+++.+ ..+.+++|. ....+.+++ +.+++||++|+++|+.++..+++++|++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQG---FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEETT---EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEECC---EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3458999999999999999999998755 346677763 344555553 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAK 610 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAK 610 (663)
|+|||++++.+|+.+..|+..+... ....++|+|||+||+|+.... ..+++.+.... .+ +.|++|||+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 160 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEE---EKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRV-WQIQSCSAL 160 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTC---GGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSC-EEEEECCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhC---hhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCc-eEEEEccCC
Confidence 9999999999999999998877532 123569999999999997654 33333333221 22 479999999
Q ss_pred CCcCHHHHHHHHHHHHHhh
Q psy4094 611 DNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile~ 629 (663)
+|.||+++|++|++.+..+
T Consensus 161 ~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 161 TGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp TCTTHHHHHHHHHHTC---
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999887654
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=9.5e-26 Score=211.39 Aligned_cols=163 Identities=22% Similarity=0.294 Sum_probs=131.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+...+.+|++.++.. +... .+.+.|||++|+++|..++..+++++|++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG---NVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET---TEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC---CEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 456999999999999999999999999988888999877653 3333 37899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKD 611 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKt 611 (663)
|+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+.... ..+++....... ..+.||+|||++
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCc---ccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 99999999999999999998876421 22569999999999997642 333332222211 124799999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
|.||+++|++|++.+..+
T Consensus 169 g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CTTHHHHHHHHHHTCC--
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999877543
No 86
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=7.5e-27 Score=218.63 Aligned_cols=168 Identities=20% Similarity=0.393 Sum_probs=126.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhC--CCCCccccceeeeceeEEEecC--CceeEEEEEEeCCCccchhhhHHHHHhcCc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQ--FFSPHYRATIGVDFALKVLSWD--HETIIRLQLWDIAGQERFGNMTRVYYKEAV 533 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~--~fsee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQErfrsl~~~~~r~AD 533 (663)
.+||+|+|++|||||||+++|++. .+...+.+|+|.++....+.+. +...+.+.+||++|+++|..++..|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 379999999999999999999984 5667788999999877776552 112578999999999999999999999999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHHcCCC---eEEE
Q psy4094 534 GAFIVFDVTRA-ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN---PAKIDEFIKEHNFS---GWFE 606 (663)
Q Consensus 534 gaILVyDVTd~-~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs---~eei~qlak~~g~i---~ffE 606 (663)
++|+|||++++ .+|+.+..|+..+.... .++|+||||||+|+...+ .+. .+.+..++..+++. .|++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVILVGTHLDVSDEK-QRKACMSKITKELLNKRGFPAIRDYHF 155 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-----TTCEEEEEEECGGGCCHH-HHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-----CCCcEEEEEECCCcccch-hhHHHHHHHHHHHHHhcCCcchhheEE
Confidence 99999999998 58999999999987642 368999999999997643 111 23345566556652 3999
Q ss_pred EeCCCCc-CHHHHHHHHHHHHHhhhh
Q psy4094 607 TSAKDNI-NIDDAAKTLVQKILENDK 631 (663)
Q Consensus 607 tSAKtGe-NVeELFe~IIr~Ile~~k 631 (663)
|||++|. +++++++.|++.+.....
T Consensus 156 ~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 156 VNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred EecccCchhHHHHHHHHHHHHhcccc
Confidence 9999996 999999999998876543
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.1e-25 Score=207.99 Aligned_cols=160 Identities=22% Similarity=0.276 Sum_probs=128.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+. .+.+|++. ....+.+++ +.++|||++|+++|+.++..+++++|++|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS--NVEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS--SCEEEEETT---EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc--ceEEEEECC---EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 4589999999999999999999988876 67777764 344555554 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAKD 611 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAKt 611 (663)
+|||++++.+|+.+..|+..+..+. ...++|+|||+||+|+... ...+++.+.+.. .+ +.|++|||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQ-WHIQACCALT 161 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSC-EEEEECBTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhch---hhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCC-cEEEEccCCC
Confidence 9999999999999999998887532 1246999999999999763 345555555432 23 4799999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
|.||+++|++|++.+...
T Consensus 162 g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TBTHHHHHHHHHHHHCC-
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999987554
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.93 E-value=2.8e-25 Score=201.45 Aligned_cols=160 Identities=23% Similarity=0.325 Sum_probs=128.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+. .+.++++.. ...+.+++ +.++|||++|+++|+.++..+++++|++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFN--VETVTYKN---LKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE--EEEEEETT---EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccc--eEEEEECC---EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 4589999999999999999999998875 456676644 44555553 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HHcCCCeEEEEeCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI-----KEHNFSGWFETSAKD 611 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla-----k~~g~i~ffEtSAKt 611 (663)
+|||++++.+|..+..|+..+.... ...++|+|||+||+|+.... ..+++.... ...+ +.|++|||++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEE---ELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRK-WQIFKTSATK 152 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSC-EEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhch---hhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCc-eEEEECcCCC
Confidence 9999999999999999988776421 12569999999999997643 233333322 2233 3799999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
|.||+++|++|++.+.++
T Consensus 153 ~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 153 GTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHhhc
Confidence 999999999999988654
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=5.5e-26 Score=216.40 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=124.1
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
.+||+|+|++|||||||+++|.++.+. .+.+|++.. ...+.+++ +.+++|||+|+++|+.++..+++++|++|+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG---MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT---EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC---EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 479999999999999999999988764 466777654 34555655 689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----------------CC
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----------------NF 601 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----------------g~ 601 (663)
|||++++.+|+.+..|+..+.... ...++|+|||+||+|+.. .+..+++.+++... ..
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDE---TIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCG---GGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred EEECCCHHHHHHHHHHHHHHHhCc---ccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCce
Confidence 999999999999999998887431 235699999999999976 45778888877632 23
Q ss_pred CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 602 SGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 602 i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
+.|++|||++|.||+++|++|++.+
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999998643
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=209.74 Aligned_cols=164 Identities=21% Similarity=0.288 Sum_probs=132.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC-CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF-FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~-fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
...+||+|+|+.|||||||+++|++.. +...+.+|++ +....+.+++ +.+.|||++|+++|+.++..+++++|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS---LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS---CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 345899999999999999999999887 5666777776 4455666664 579999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAK 610 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAK 610 (663)
+|+|||++++.+|+.+..|+..+...... ...++|+|||+||+|+... +..+++.+++... ..+.|++|||+
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA---VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC---CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 99999999999999999999888753211 1157999999999999763 3566676666421 12479999999
Q ss_pred CCcCHHHHHHHHHHHHHh
Q psy4094 611 DNINIDDAAKTLVQKILE 628 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile 628 (663)
+|.||+++|++|++.+..
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987643
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=1.9e-25 Score=207.16 Aligned_cols=161 Identities=23% Similarity=0.308 Sum_probs=131.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++. ...+.+|++.. ...+.+++ +.++||||+|+++|+.++..+++++|++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 89 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG---FKLNIWDVGGQKSLRSYWRNYFESTDGL 89 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT---EEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC---EEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 345899999999999999999999887 66777887744 44555543 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HcCCCeEEEEeCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-----EHNFSGWFETSAK 610 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-----~~g~i~ffEtSAK 610 (663)
|+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+.... ..+++.+... ..+ ++|++|||+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 162 (186)
T 1ksh_A 90 IWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGAL---SCNAIQEALELDSIRSHH-WRIQGCSAV 162 (186)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSC-EEEEECCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhCh---hcCCCcEEEEEeCccCCCCC---CHHHHHHHhChhhccCCc-eEEEEeeCC
Confidence 99999999999999999988876431 23569999999999997643 3444444332 123 479999999
Q ss_pred CCcCHHHHHHHHHHHHHhh
Q psy4094 611 DNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 611 tGeNVeELFe~IIr~Ile~ 629 (663)
+|.||+++|++|++.+.++
T Consensus 163 ~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 163 TGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999988664
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=1.6e-25 Score=211.54 Aligned_cols=157 Identities=21% Similarity=0.226 Sum_probs=129.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|++|||||||+++|.++.+. .+.+|++.. ...+.+++ +.+++|||+|+++++.++..+++++|++|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN---IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT---EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 3479999999999999999999998875 466677654 45566655 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-----------CCCeEE
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-----------NFSGWF 605 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-----------g~i~ff 605 (663)
+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+.. .+..+++.+++... ..+.|+
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVF 169 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcch---hhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEE
Confidence 9999999999999999998887431 235699999999999976 35667777766532 235799
Q ss_pred EEeCCCCcCHHHHHHHHHHH
Q psy4094 606 ETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~ 625 (663)
+|||++|+||+++|++|++.
T Consensus 170 ~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 170 MCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EeECCcCCCHHHHHHHHHhh
Confidence 99999999999999999864
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.93 E-value=1.4e-25 Score=208.70 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=127.8
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+ ..+.++++..+ ..+.+++ +.+.|||++|+++|+.++..+++++|++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 92 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFV 92 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT---EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3458999999999999999999999888 56677777544 4555544 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAK 610 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAK 610 (663)
|+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+... ...+++.+.+.. .+ +.||+|||+
T Consensus 93 i~v~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~ 165 (181)
T 2h17_A 93 IVVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQ-WHIQACCAL 165 (181)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSC-EEEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCh---hhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCc-eEEEEccCC
Confidence 99999999999999999988876421 1356999999999999763 344555554422 22 379999999
Q ss_pred CCcCHHHHHHHHHHH
Q psy4094 611 DNINIDDAAKTLVQK 625 (663)
Q Consensus 611 tGeNVeELFe~IIr~ 625 (663)
+|.||+++|++|++.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999999864
No 94
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=7.5e-26 Score=213.84 Aligned_cols=163 Identities=20% Similarity=0.269 Sum_probs=123.7
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEe--cCCceeEEEEEEeCCCccchhhhH---HHH
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLS--WDHETIIRLQLWDIAGQERFGNMT---RVY 528 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~--vdge~~vkLqIwDTpGQErfrsl~---~~~ 528 (663)
..+..+||+|+|+.|||||||++++.+. +... .+++.++....+. +.+...+.++|||++|+++|..+. ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3455699999999999999999977663 4333 4555555444443 333235789999999999998776 899
Q ss_pred HhcCcEEEEEEeCCCc--ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC------CCCCCHHHHHHHHH---
Q psy4094 529 YKEAVGAFIVFDVTRA--ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE------GIANNPAKIDEFIK--- 597 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~--~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de------r~~Vs~eei~qlak--- 597 (663)
|+++|++|+|||++++ .++..+..|+..+... ..++|+||||||+|+... .+.+..+++..++.
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-----NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-----CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-----CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 9999999999999998 6677777777776532 347999999999998542 11345556777777
Q ss_pred -HcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 598 -EHNFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 598 -~~g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
.++ +.|++|||++ .||+++|..|++.+
T Consensus 168 ~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLH-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence 556 4899999999 99999999999876
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.5e-25 Score=206.35 Aligned_cols=162 Identities=24% Similarity=0.340 Sum_probs=127.7
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|+|+.|||||||+++|+++.+ ..+.++++.. ...+.+++ +.+.+||++|+++|+.++..+++++|++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 89 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTAAV 89 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT---EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3458999999999999999999998777 5667777733 44555543 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKD 611 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKt 611 (663)
|+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+... ...+++........ ..+|++|||++
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 90 IFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHcCh---hhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 99999999999999999988876431 2457999999999999763 34455554443221 13799999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
|.||+++|++|++.+.++
T Consensus 164 ~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 164 GEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999988764
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=4.3e-25 Score=208.89 Aligned_cols=159 Identities=20% Similarity=0.287 Sum_probs=122.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|++|||||||+++|+++.+. .+.+|++ +....+.+.+ +.+.|||++|+++|+.++..+++++|++|
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN---ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT---EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4589999999999999999999988775 4566666 3344555543 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-----cCCCeEEEEeCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-----HNFSGWFETSAKD 611 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-----~g~i~ffEtSAKt 611 (663)
+|||++++.+|+.+..|+..+.... ...++|+|||+||+|+.... ..+++...... .+ ++|++|||++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~-~~~~~~SA~~ 174 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQED---ELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQHLRSRT-WYVQATCATQ 174 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCC-EEEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc---ccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcccccCCc-eEEEECcCCC
Confidence 9999999999999999998876421 23469999999999997642 33333322211 12 3699999999
Q ss_pred CcCHHHHHHHHHHHHHh
Q psy4094 612 NINIDDAAKTLVQKILE 628 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile 628 (663)
|.||+++|++|++.+.+
T Consensus 175 g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TBTHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999988754
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=4.7e-25 Score=222.16 Aligned_cols=165 Identities=22% Similarity=0.339 Sum_probs=145.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..++|+|+|++|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK-PVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTE-EEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCE-EEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 348999999999999999999999999888888887555 556666665 688999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHHcCCCeE
Q psy4094 537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE-----------GIANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~de-----------r~~Vs~eei~qlak~~g~i~f 604 (663)
+|||++++.+|+.+. .|+..+.... .++|+|||+||+|+... ...+..+++..++..+++.+|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-----TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC-----CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 999999999999997 7988888653 26999999999998653 136788999999999997689
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile 628 (663)
|+|||++|.||+++|++|++.++.
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEecCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999998864
No 98
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=1.3e-24 Score=205.81 Aligned_cols=165 Identities=32% Similarity=0.646 Sum_probs=148.1
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVG 534 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADg 534 (663)
.+..++|+|||++|||||||+++|++..+...+.++++.++....+.+++. .+.+++||++|++++..++..+++.+++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~-~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK-TIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE-EEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE-EEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 456799999999999999999999999999899999999999999999886 6788999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcC
Q psy4094 535 AFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNIN 614 (663)
Q Consensus 535 aILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeN 614 (663)
+|+|||+++..+|+.+..|+..+.... ..+.|+++|+||+|+...+ .+..++++.++...++ .|++|||+++.|
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~~~~-~~ld~Sald~~~ 178 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEKNGL-SFIETSALDSTN 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHHTTC-EEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccccccc-ccCHHHHHHHHHHcCC-EEEEEeCCCCCC
Confidence 999999999999999999998876532 2468999999999997655 5677889999999885 799999999999
Q ss_pred HHHHHHHHHHHH
Q psy4094 615 IDDAAKTLVQKI 626 (663)
Q Consensus 615 VeELFe~IIr~I 626 (663)
++++|++|.+.+
T Consensus 179 v~~l~~~l~~~i 190 (191)
T 1oix_A 179 VEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=2.5e-27 Score=224.40 Aligned_cols=164 Identities=23% Similarity=0.360 Sum_probs=139.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+...+.++++..+ ...+.+++. .+.++|||++|+++|..++..+++++|++|
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGK-PVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 458999999999999999999999988888888887554 445556554 678999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHHcCCCeE
Q psy4094 537 IVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-----------IANNPAKIDEFIKEHNFSGW 604 (663)
Q Consensus 537 LVyDVTd~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-----------~~Vs~eei~qlak~~g~i~f 604 (663)
+|||++++.+|+.+. .|+..+.... .++|+|||+||+|+...+ ..+..+++..++..+++.+|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
Confidence 999999999999997 8888877532 368999999999997543 14556778888888886589
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 605 FETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Il 627 (663)
++|||++|.||+++|++|++.++
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 99999999999999999988763
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=8.8e-25 Score=203.65 Aligned_cols=160 Identities=23% Similarity=0.309 Sum_probs=128.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|+.|||||||+++|+++.+. .+.+|++ +....+.+++ +.++||||+|+++++.++..+++++|++|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVG--VNLETLQYKN---ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTT--CCEEEEEETT---EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCc--eEEEEEEECC---EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 4589999999999999999999887765 3566666 4444555543 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----HcCCCeEEEEeCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK-----EHNFSGWFETSAKD 611 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak-----~~g~i~ffEtSAKt 611 (663)
+|||++++.+|+.+..|+..+... ....++|+|||+||+|+.... ..+++..... ..+ ++|++|||++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 167 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDE---DELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRT-WTIVKSSSKT 167 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTC---STTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSC-EEEEECCTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhh---hhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCc-eEEEEccCCC
Confidence 999999999999999998877642 233579999999999997643 3333333221 123 3799999999
Q ss_pred CcCHHHHHHHHHHHHHhh
Q psy4094 612 NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~ 629 (663)
|.||+++|++|++.+..+
T Consensus 168 ~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999999988664
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.91 E-value=2.9e-24 Score=204.38 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=116.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh-hHHHHHhcCcEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-MTRVYYKEAVGA 535 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-l~~~~~r~ADga 535 (663)
..+||+|+|+.|||||||+++|+++.+...+.. ++.++.. +.+++...+.++||||+|+++|+. ++..|++++|++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 458999999999999999999999988877754 4445544 555543247899999999999998 899999999999
Q ss_pred EEEEeCCCcc-cHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHH---------------
Q psy4094 536 FIVFDVTRAA-TFDAVLKW-KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPAKIDEFIK--------------- 597 (663)
Q Consensus 536 ILVyDVTd~~-SFe~L~~w-ieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~eei~qlak--------------- 597 (663)
|+|||+++.. ++..+..| ...+.... ....++|+|||+||+|+...+. ....+.+...+.
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSM--ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHH--TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhh--hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 9999999853 45555544 44443221 1234689999999999976541 000111111111
Q ss_pred -----------------HcC--CCeEEEEeCCCC------cCHHHHHHHHHHH
Q psy4094 598 -----------------EHN--FSGWFETSAKDN------INIDDAAKTLVQK 625 (663)
Q Consensus 598 -----------------~~g--~i~ffEtSAKtG------eNVeELFe~IIr~ 625 (663)
... .+.|++|||++| .||+++|++|++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 010 357999999999 9999999999875
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.91 E-value=2e-24 Score=197.47 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=126.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..++|+|+|+.|||||||+++|+++.+...+.++++.++....+.+++. .+.||||+|+++|..++..++..+|++|
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK---KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE---EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc---eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4589999999999999999999999998888888888888888887764 6789999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC--------CeEEEEe
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF--------SGWFETS 608 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~--------i~ffEtS 608 (663)
+|||++++....... ++..+. ..++|+|||+||+|+... ..+++...+...+. +.|++||
T Consensus 84 ~v~d~~~~~~~~~~~-~l~~~~-------~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 84 LVVAADDGVMPQTVE-AINHAK-------AANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEETTCCCCHHHHH-HHHHHG-------GGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEECCCCCcHHHHH-HHHHHH-------hCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 999999854433322 222222 235899999999999763 23344443333321 4799999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 609 AKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile~~k 631 (663)
|++|.||+++|++|++.+...+.
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHhhhhhcc
Confidence 99999999999999998766543
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=3.2e-24 Score=197.45 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=120.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh------hhHHHHHh-
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG------NMTRVYYK- 530 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr------sl~~~~~r- 530 (663)
.++|+|+|++|||||||+++|++..+...+.++++.++....+.+++ ..+++|||+|+++|. .+...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT---EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC---cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 47999999999999999999999877666667777777777777665 479999999998875 45567775
Q ss_pred -cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 531 -EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 531 -~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
++|++|+|||+++. +....|+..+.. .++|+|||+||+|+...+ .+.. ++.+++..+++ +|++|||
T Consensus 80 ~~~~~~i~v~D~~~~---~~~~~~~~~~~~-------~~~p~ilv~nK~Dl~~~~-~~~~-~~~~~~~~~~~-~~~~~SA 146 (165)
T 2wji_A 80 EKPDLVVNIVDATAL---ERNLYLTLQLME-------MGANLLLALNKMDLAKSL-GIEI-DVDKLEKILGV-KVVPLSA 146 (165)
T ss_dssp HCCSEEEEEEETTCH---HHHHHHHHHHHH-------TTCCEEEEEECHHHHHHT-TCCC-CHHHHHHHHTS-CEEECBG
T ss_pred CCCCEEEEEecCCch---hHhHHHHHHHHh-------cCCCEEEEEEchHhcccc-Chhh-HHHHHHHHhCC-CEEEEEc
Confidence 89999999999874 455668777763 258999999999986543 2322 46778888885 8999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy4094 610 KDNINIDDAAKTLVQKI 626 (663)
Q Consensus 610 KtGeNVeELFe~IIr~I 626 (663)
++|.||+++|++|++.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998865
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.91 E-value=3.8e-25 Score=220.93 Aligned_cols=166 Identities=27% Similarity=0.368 Sum_probs=132.5
Q ss_pred CcceeEEEEEeCC---------CCCHHHHHHHHHh---CCCCCccccce-eeeceeEEEec--------------CCcee
Q psy4094 455 REFLYKILVIGEL---------GAGKTSIIKRYVH---QFFSPHYRATI-GVDFALKVLSW--------------DHETI 507 (663)
Q Consensus 455 ~d~~~KIVVLGd~---------GVGKTSLInrLlg---~~fsee~~~Ti-giDf~~ktV~v--------------dge~~ 507 (663)
....+||+|||++ |||||||+++|++ +.+...+.+++ +.+|..+.+.+ ++. .
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~ 94 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV-E 94 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc-E
Confidence 3456999999999 9999999999999 66777788886 77877666553 333 6
Q ss_pred EEEEEEe-----------------------CCCccchhhhHHHHHh---------------------cCcEEEEEEeCCC
Q psy4094 508 IRLQLWD-----------------------IAGQERFGNMTRVYYK---------------------EAVGAFIVFDVTR 543 (663)
Q Consensus 508 vkLqIwD-----------------------TpGQErfrsl~~~~~r---------------------~ADgaILVyDVTd 543 (663)
+.++||| ++|+++|..++..+|+ +||++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 7888888888888888 8999999999999
Q ss_pred c--ccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHH
Q psy4094 544 A--ATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT 621 (663)
Q Consensus 544 ~--~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~ 621 (663)
+ .+|+.+..|+..+..+.. ..++|+|||+||+|+...+ . .+++.+++.....+.|++|||++|.||+++|++
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~---~~~~piilV~NK~Dl~~~~-~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLA---KTKKPIVVVLTKCDEGVER-Y--IRDAHTFALSKKNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHH---HTTCCEEEEEECGGGBCHH-H--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhc---cCCCCEEEEEEcccccccH-H--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHH
Confidence 8 999999999998876421 2458999999999996644 2 267778887643358999999999999999999
Q ss_pred HHHHHH
Q psy4094 622 LVQKIL 627 (663)
Q Consensus 622 IIr~Il 627 (663)
|++.+.
T Consensus 249 l~~~l~ 254 (255)
T 3c5h_A 249 LVQLID 254 (255)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998764
No 105
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.90 E-value=6.8e-24 Score=195.95 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=127.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC-----------ccchhhhHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG-----------QERFGNMTRV 527 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG-----------QErfrsl~~~ 527 (663)
+||+|+|+.|||||||+++|++..+...+.++++.+. ..+.+. .+.+|||+| ++.|..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK-----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET-----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC-----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 7999999999999999999999988877777665443 333333 488999999 7888899999
Q ss_pred HHhc-CcEEEEEEeCCCcccHHHH-HHHHHH--------HHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH
Q psy4094 528 YYKE-AVGAFIVFDVTRAATFDAV-LKWKQD--------LDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK 597 (663)
Q Consensus 528 ~~r~-ADgaILVyDVTd~~SFe~L-~~wiee--------L~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak 597 (663)
|++. ++++++||++.|..+|..+ ..|... +...+ ...++|+|||+||+|+...+ .+++.+++.
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~ 147 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL---RELDIPTIVAVNKLDKIKNV----QEVINFLAE 147 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH---HHTTCCEEEEEECGGGCSCH----HHHHHHHHH
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH---HhcCCceEEEeehHhccCcH----HHHHHHHHH
Confidence 9998 9999999999999999887 677642 22221 12469999999999997643 567888888
Q ss_pred HcCCC------eEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 598 EHNFS------GWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 598 ~~g~i------~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
.+++. .|++|||++|.||+++|++|++.+...+.
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 88862 47999999999999999999999877654
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.90 E-value=6.1e-23 Score=199.07 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=120.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCc------cc----hhhhH
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ------ER----FGNMT 525 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ------Er----frsl~ 525 (663)
...++|+|+|+.|||||||+++|+++.+.....+..+.++....+.+.+ +.+.||||+|+ ++ +.. +
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL---NKYQIIDTPGLLDRAFENRNTIEMTT-I 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT---EEEEEEECTTTTTSCGGGCCHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC---CeEEEEECCCCcCcccchhhhHHHHH-H
Confidence 4458999999999999999999999877543333333344444444443 57999999999 44 333 3
Q ss_pred HHHHhcCcEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHHcC
Q psy4094 526 RVYYKEAVGAFIVFDVTRAATFD--AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPA---KIDEFIKEHN 600 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~SFe--~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~e---ei~qlak~~g 600 (663)
..++..+|++|+|||++++.+|. ....|+..+... ..++|+|||+||+|+...+ .+..+ .+..++...+
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-----~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 176 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-----FSNKSIVIGFNKIDKCNMD-SLSIDNKLLIKQILDNVK 176 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-----C-CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCC
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-----hcCCcEEEEEeCcccCCch-hhHHHHHHHHHHHHHhcC
Confidence 44678899999999999998875 234566666531 2469999999999997755 44443 4566776665
Q ss_pred -CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 601 -FSGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 601 -~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
.+.||+|||++|.||+++|++|++.+...+.
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 177 NPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp SCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 2479999999999999999999999987654
No 107
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=2e-23 Score=193.47 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=129.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh------hhHHHHHh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG------NMTRVYYK 530 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr------sl~~~~~r 530 (663)
..++|+|+|++|||||||+++|++..+...+.++++.++....+.+++ +.+.||||+|+++|. .++..|++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT---EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC---cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 458999999999999999999999877666777777777777777765 579999999999875 45777775
Q ss_pred --cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 531 --EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 531 --~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
.+|++++|+|+++ ++....|+..+.. .++|+|||+||+|+...+ .+. ..+.+++..+++ .|++||
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~-~~~-~~~~~~~~~~~~-~~~~~S 149 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSL-GIE-IDVDKLEKILGV-KVVPLS 149 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTS-CEEECB
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhccccc-cch-HHHHHHHHHhCC-CeEEEE
Confidence 4999999999875 6777788887763 468999999999986543 222 456778888885 899999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhh
Q psy4094 609 AKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile~~ 630 (663)
|++|+||+++|++|++.+....
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC-
T ss_pred ecCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999886654
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.2e-23 Score=213.35 Aligned_cols=161 Identities=21% Similarity=0.285 Sum_probs=122.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAF 536 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaI 536 (663)
..+||+|+|++|||||||+++|+++.+... .+|++..+. .+... .+.++||||+|+++|..++..+++.+|++|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~~---~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEET---TEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEecC---cEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 458999999999999999999998887544 356665543 34433 368999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC----CCeEEEEeCCCC
Q psy4094 537 IVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN----FSGWFETSAKDN 612 (663)
Q Consensus 537 LVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g----~i~ffEtSAKtG 612 (663)
||||++++.+|..+..|+..+... ....++|+|||+||+|+.... ..+++........ .+.||+|||++|
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAE---DELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred EEEECCchHHHHHHHHHHHHHHhh---hccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence 999999999999999888777642 223579999999999997644 3333333332211 146999999999
Q ss_pred cCHHHHHHHHHHHHHhh
Q psy4094 613 INIDDAAKTLVQKILEN 629 (663)
Q Consensus 613 eNVeELFe~IIr~Ile~ 629 (663)
.||+++|++|++.+..+
T Consensus 312 ~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 312 DGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp BTHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988654
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=7.1e-23 Score=190.80 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=111.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhhHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNMTR 526 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl~~ 526 (663)
..++|+|+|+.|||||||+++|++..+...+..+.+..+....+.+++ .+.||||+| ++.|..++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND----ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT----TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC----cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 458999999999999999999999887666666666555555555544 389999999 888999999
Q ss_pred HHHhcC---cEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC--HHHHHHHHHHcCC
Q psy4094 527 VYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN--PAKIDEFIKEHNF 601 (663)
Q Consensus 527 ~~~r~A---DgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs--~eei~qlak~~g~ 601 (663)
.+++.+ |++|+|||++++.++.... ++..+.. .++|+|||+||+|+...+ .+. .+++.+.+.....
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKG-KWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGG-GHHHHHHHHHHHHTCCTT
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChH-HHHHHHHHHHHHHcccCC
Confidence 999888 9999999999988887753 2222321 458999999999997644 111 1223332222233
Q ss_pred CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 602 SGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 602 i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
..|++|||++|.||+++|++|++.+.
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 58999999999999999999998763
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.89 E-value=5.4e-23 Score=184.69 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=111.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc-------hhhhHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER-------FGNMTRVYYK 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr-------frsl~~~~~r 530 (663)
+||+|+|+.|||||||+++|++..+. ....++.+.++....+.+++. .+.|||++|+.. +...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG---RFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE---EEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc---eEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 69999999999999999999988754 344455666777777777663 789999999987 4566777899
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCC
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK 610 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAK 610 (663)
.+|++|+|||++++.++.. .|+..+... .++|+|||+||+|+.... +++.+++ .+++..|++|||+
T Consensus 79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~~~~~~~~~~Sa~ 144 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKHE-----LYLGPLY-GLGFGDPIPTSSE 144 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGGG-----GGCGGGG-GGSSCSCEECBTT
T ss_pred hCCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccch-----HhHHHHH-hCCCCCeEEEecc
Confidence 9999999999998755433 232222211 358999999999997642 3444555 5675579999999
Q ss_pred CCcCHHHHHHHHHHHH
Q psy4094 611 DNINIDDAAKTLVQKI 626 (663)
Q Consensus 611 tGeNVeELFe~IIr~I 626 (663)
+|.||+++|++|++.+
T Consensus 145 ~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 145 HARGLEELLEAIWERL 160 (161)
T ss_dssp TTBSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHhC
Confidence 9999999999998864
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.89 E-value=3.1e-23 Score=213.23 Aligned_cols=165 Identities=22% Similarity=0.273 Sum_probs=133.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC---CccccceeeeceeEEEecCCceeEEEEEEeCCCccch-----hhhHHHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS---PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF-----GNMTRVYY 529 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs---ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf-----rsl~~~~~ 529 (663)
.+||+|+|++|||||||+++|+++... ..+.+|++.++.. +.+++. +.++|||++|+++| ..++..++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLGN--MTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETTT--EEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCCc--eEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 489999999999999999999987332 2456677766654 444443 78999999999998 78999999
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC--CCCC----CCHHHHHHHHHHcCC--
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK--EGIA----NNPAKIDEFIKEHNF-- 601 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d--er~~----Vs~eei~qlak~~g~-- 601 (663)
+++|++|+|||++++.+|+.+..|+..+..... ...++|+||||||+|+.. .+ . +..+++.+++..+|+
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~--~~~~~piilv~NK~Dl~~~~~r-~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK--YSPDAKIFVLLHKMDLVQLDKR-EELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHH-HHHHHHHHHHHHHHHHTTTCCS
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEecccccchhhh-hHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999887665554321 135699999999999976 33 2 455788899999984
Q ss_pred CeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 602 SGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 602 i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
++|++|||++ .|+.++|..+++.++...
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 6899999999 899999999998765543
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.89 E-value=5.4e-24 Score=224.27 Aligned_cols=161 Identities=19% Similarity=0.207 Sum_probs=124.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCC---ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh---hHHHHHhcCc
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSP---HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN---MTRVYYKEAV 533 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fse---e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs---l~~~~~r~AD 533 (663)
||+|||+.|||||||++++.++.+.. .+.+|+|+++.. + +. .++|+||||+||++|+. ++..||++|+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~~--~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--ST--LIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--CS--SSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--cc--EEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 69999999999999999888664433 356888887753 2 22 37899999999999974 4799999999
Q ss_pred EEEEEEeCCCcccHHHHHHH---HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC------CCCCHHHHHHHHHH----cC
Q psy4094 534 GAFIVFDVTRAATFDAVLKW---KQDLDAKVTLPDGNPIPCVLLANKCDQPKEG------IANNPAKIDEFIKE----HN 600 (663)
Q Consensus 534 gaILVyDVTd~~SFe~L~~w---ieeL~~~~~~~~~~~IPIILVGNKsDL~der------~~Vs~eei~qlak~----~g 600 (663)
++|+|||++++ .++.+..| +..+..+ ..++|++|||||+||..+. +.+..+++.++++. ++
T Consensus 75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~-----~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 75 ALVYVIDSQDE-YINAITNLAMIIEYAYKV-----NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp EEEEECCCSSC-TTHHHHHHHHHHHHHHHH-----CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred EEEEEEECCch-HHHHHHHHHHHHHHHhhc-----CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence 99999999998 43433333 4444432 3569999999999997642 24666677777775 45
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKILENDKVQA 634 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~~~ 634 (663)
+.||+|||++ +||.++|..|++.++.+....+
T Consensus 149 -i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le 180 (331)
T 3r7w_B 149 -VSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLE 180 (331)
T ss_dssp -EEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHH
T ss_pred -ceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHH
Confidence 5899999997 6999999999999887766444
No 113
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=1.5e-22 Score=187.14 Aligned_cols=158 Identities=15% Similarity=0.233 Sum_probs=119.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhhH
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNMT 525 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl~ 525 (663)
...+||+|+|+.|||||||+++|++..+ ..+.++.+..........+. .+.+|||+| ++.|..++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~----~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS----KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT----TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC----cEEEEECCCCccccCChhhHHHHHHHH
Confidence 3458999999999999999999998873 33444555444444444443 378999999 77888999
Q ss_pred HHHHhcC---cEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc
Q psy4094 526 RVYYKEA---VGAFIVFDVTRAATFD--AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH 599 (663)
Q Consensus 526 ~~~~r~A---DgaILVyDVTd~~SFe--~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~ 599 (663)
..+++.+ |++++|+|+++..+.. .+..|+..+ ++|+|||+||+|+.... ..+..+++.+++...
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence 9999887 9999999998865543 333444332 48999999999986532 234445667777776
Q ss_pred CCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 600 NFSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 600 g~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
+.++|++|||++|.||+++|++|++.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 66689999999999999999999988753
No 114
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=2.5e-22 Score=217.41 Aligned_cols=163 Identities=19% Similarity=0.266 Sum_probs=128.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGA 535 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADga 535 (663)
...+||+|||.+|||||||+++|+++.+. .+.+|++.++. .+.+.+ +.+.||||+|+++|+.++..+|+++|++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEESSS---CEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEEeCC---EEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 45699999999999999999999998865 45567765544 344443 5899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCC
Q psy4094 536 FIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----NFSGWFETSAKD 611 (663)
Q Consensus 536 ILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g~i~ffEtSAKt 611 (663)
|+|||++++.+|+.+..|+..+... ....++|+|||+||+|+.... ..+++....... ..+.||+|||++
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIIND---REMRDAIILIFANKQDLPDAM---KPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTS---GGGTTCEEEEEEECCSSSSCC---CHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEEEECcchhHHHHHHHHHHHHhhh---hhcCCCcEEEEEECCCCCcCC---CHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 9999999999999999999888642 123579999999999997643 334333322211 113699999999
Q ss_pred CcCHHHHHHHHHHHHHhhh
Q psy4094 612 NINIDDAAKTLVQKILEND 630 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~~ 630 (663)
|.||+++|++|++.+..+.
T Consensus 468 g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp TBTHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999998775443
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=2.9e-22 Score=186.71 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=116.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh--------HHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM--------TRVY 528 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl--------~~~~ 528 (663)
.+||+|+|++|||||||+++|++..+. ....++.+.++....+.+++. .+.+|||+|++++... ...+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM---PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE---EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe---EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 379999999999999999999987653 234456667777788888763 5899999998754211 1246
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
++++|++|+|||++++.+|+. ..|+..+.... ..++|+|||+||+|+..+... ++...+ ..|++||
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~----~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~-~~~~~~S 146 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL----PAKLPITVVRNKADITGETLG--------MSEVNG-HALIRLS 146 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS----CTTCCEEEEEECHHHHCCCCE--------EEEETT-EEEEECC
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc----ccCCCEEEEEECccCCcchhh--------hhhccC-CceEEEe
Confidence 899999999999999998874 57877776542 246999999999998543211 112233 5799999
Q ss_pred CCCCcCHHHHHHHHHHHHH
Q psy4094 609 AKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Il 627 (663)
|++|+||+++|++|++.+.
T Consensus 147 A~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999988763
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.86 E-value=9e-22 Score=216.25 Aligned_cols=166 Identities=22% Similarity=0.328 Sum_probs=126.3
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEE------EecCC-ceeEEEEEEeCCCccchhhhHHHH
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV------LSWDH-ETIIRLQLWDIAGQERFGNMTRVY 528 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~kt------V~vdg-e~~vkLqIwDTpGQErfrsl~~~~ 528 (663)
...+||+|+|.+|||||||+++|.+..+...+.+|+|.++..+. +.+++ ...+.+.|||++|++.|..++..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 35699999999999999999999999998889999998887652 33332 114789999999999999999999
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
++.+|++|+|||+++. +.+..|+..+..+. .++|+|||+||+|+...+ .+..+++..++...++ +|++||
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-----~~~pvilV~NK~Dl~~~~-~v~~~~~~~~~~~~~~-~~~~vS 188 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-----GKSPVIVVMNKIDENPSY-NIEQKKINERFPAIEN-RFHRIS 188 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-----SSCCEEEEECCTTTCTTC-CCCHHHHHHHCGGGTT-CEEECC
T ss_pred ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-----CCCCEEEEEECCCccccc-ccCHHHHHHHHHhcCC-ceEEEe
Confidence 9999999999999864 56678999888752 358999999999998766 6778888888888885 799999
Q ss_pred CCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 609 AKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile~~k 631 (663)
|++|.||+++|.+|++.+.....
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp C-----CTTHHHHHHHHHTCTTS
T ss_pred cCcccCHHHHHHHHHHHHhcccc
Confidence 99999999999999998876543
No 117
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=9.4e-22 Score=187.52 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=110.8
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCC---ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc-
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSP---HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE- 531 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fse---e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~- 531 (663)
...++|+|+|+.|||||||+++|++..+.. .+.++++.++ . .+.+.|||++|+++++.++..|++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------D--GSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------G--GSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------e--CceEEEEECCCcHHHHHHHHHHHHhc
Confidence 345899999999999999999999987754 3566666554 1 3568999999999999999999988
Q ss_pred ---CcEEEEEEeCC-CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHHHcCC
Q psy4094 532 ---AVGAFIVFDVT-RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN------PAKIDEFIKEHNF 601 (663)
Q Consensus 532 ---ADgaILVyDVT-d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs------~eei~qlak~~g~ 601 (663)
+|++|+|||++ ++.+|..+..|+..+..........++|+|||+||+|+...+ .+. .+++..++...++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR-PPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 889999999998887754321123569999999999998765 222 4556677777764
Q ss_pred CeEEEEeCCCCcC
Q psy4094 602 SGWFETSAKDNIN 614 (663)
Q Consensus 602 i~ffEtSAKtGeN 614 (663)
.|+++||++|.+
T Consensus 159 -~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 -SLNEVERKINEE 170 (218)
T ss_dssp -HHHC--------
T ss_pred -cccccccccccc
Confidence 799999998876
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=6.3e-21 Score=192.02 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=123.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh------hHHHHH-
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN------MTRVYY- 529 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs------l~~~~~- 529 (663)
..++|+|+|++|||||||+++|++..+.....++++++.....+...+ +.+.|||+||+..+.. +...|+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG---YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT---EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC---eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 458999999999999999999999877666667777776666666544 5899999999987764 335666
Q ss_pred -hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 530 -KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 530 -r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
..+|++|+|||+++..+. ..|+..+.. .++|+|||+||+|+...+ .+. .++..++..+++ ++++||
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~-------~~~pvilv~NK~Dl~~~~-~i~-~~~~~l~~~lg~-~vi~~S 147 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE-------MEKKVILAMTAIDEAKKT-GMK-IDRYELQKHLGI-PVVFTS 147 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT-------TTCCEEEEEECHHHHHHT-TCC-BCHHHHHHHHCS-CEEECC
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh-------cCCCEEEEEECcCCCCcc-chH-HHHHHHHHHcCC-CEEEEE
Confidence 489999999999986543 346666653 369999999999986544 232 246788888885 899999
Q ss_pred CCCCcCHHHHHHHHHHHHH
Q psy4094 609 AKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Il 627 (663)
|++|.||+++|++|++.+.
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999998764
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.84 E-value=5.6e-21 Score=182.38 Aligned_cols=163 Identities=16% Similarity=0.102 Sum_probs=112.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC--CccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS--PHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNM 524 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs--ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl 524 (663)
..++|+|+|..|||||||+++|++..+. ....+..+.+.....+...+ ...+.||||+| ++.|..+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA--EPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT--SCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC--CCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4589999999999999999999988632 22222233333333333122 25689999999 4666778
Q ss_pred HHHHHhc---CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHHc-
Q psy4094 525 TRVYYKE---AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPAKIDEFIKEH- 599 (663)
Q Consensus 525 ~~~~~r~---ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~eei~qlak~~- 599 (663)
+..|++. +|++|+|+|+++..+... ..|+..+.. .++|+|||+||+|+..... ....+.+.+.+..+
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 8888887 788999999998655332 345555542 4589999999999865330 00122333334432
Q ss_pred -----CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 600 -----NFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 600 -----g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
...++|+|||++|.||+++|++|.+.+...
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 446899999999999999999999988654
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.84 E-value=5.1e-20 Score=189.63 Aligned_cols=163 Identities=19% Similarity=0.200 Sum_probs=128.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchh----------hhH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG----------NMT 525 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr----------sl~ 525 (663)
..-.|+|+|.+|||||||+++|++..+.. ...+..+.+.....+..+.. +.+.||||||+.++. ..+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHHH
Confidence 34689999999999999999999988763 23333333333334444422 679999999985543 677
Q ss_pred HHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcC-CCeE
Q psy4094 526 RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHN-FSGW 604 (663)
Q Consensus 526 ~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g-~i~f 604 (663)
..+++.+|++|+|||++++.++.....|+..+.. .++|+|||+||+|+...+ ....+.+..+...++ ...+
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-------~~~pvilV~NK~Dl~~~~-~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-------LNKPVIVVINKIDKIGPA-KNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-------GCCCEEEEEECGGGSSSG-GGGHHHHHHHHHHCTTCCCE
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-------cCCCEEEEEECccCCCCH-HHHHHHHHHHHHhccCCCeE
Confidence 7889999999999999999999998888887774 358999999999997433 455677777888774 5689
Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 605 FETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 605 fEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
|+|||++|.||+++|++|++.+...
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccC
Confidence 9999999999999999999988654
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.83 E-value=1.3e-20 Score=191.89 Aligned_cols=152 Identities=19% Similarity=0.201 Sum_probs=117.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh------hhHHHHHh-
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG------NMTRVYYK- 530 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr------sl~~~~~r- 530 (663)
.++|+|+|++|||||||+++|.+..+.....++++++.....+.. + +.++||||||+..+. .++..|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~---~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N---KDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C---TTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C---CeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 479999999999999999999987655444555555444433333 2 468999999999876 56677776
Q ss_pred -cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 531 -EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 531 -~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
.+|++|+|||+++... ...|..++.. .++|+|||+||+|+...+ .+. ..+..++..+++ ++++|||
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~-~~~-~~~~~l~~~lg~-~vi~~SA 145 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NLYLTTQLIE-------TGIPVTIALNMIDVLDGQ-GKK-INVDKLSYHLGV-PVVATSA 145 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH-------TCSCEEEEEECHHHHHHT-TCC-CCHHHHHHHHTS-CEEECBT
T ss_pred CCCCEEEEEecCCchHh---HHHHHHHHHh-------cCCCEEEEEEChhhCCcC-CcH-HHHHHHHHHcCC-CEEEEEc
Confidence 5999999999998543 4456666653 358999999999986543 222 356778888885 8999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy4094 610 KDNINIDDAAKTLVQKI 626 (663)
Q Consensus 610 KtGeNVeELFe~IIr~I 626 (663)
++|.||+++|++|++.+
T Consensus 146 ~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp TTTBSHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999998865
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=7.2e-21 Score=192.67 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=121.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh----------hhHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG----------NMTRV 527 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr----------sl~~~ 527 (663)
.++|+|+|.+|||||||+++|.+..+.....++++.+.....+.+.+. .+.||||||+..+. .++..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH---QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC---EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC---ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 489999999999999999999998876677788888888888887664 58899999998766 23344
Q ss_pred HH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEE
Q psy4094 528 YY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWF 605 (663)
Q Consensus 528 ~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ff 605 (663)
|+ +++|++|+|||+++...+.. |...+... ++|+|+|+||+|+...+ . .......++..+++ +++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~-------~~p~ivv~NK~Dl~~~~-~-~~~~~~~l~~~lg~-~~i 146 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY---LTLQLLEL-------GIPCIVALNMLDIAEKQ-N-IRIEIDALSARLGC-PVI 146 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH-------TCCEEEEEECHHHHHHT-T-EEECHHHHHHHHTS-CEE
T ss_pred HHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc-------CCCEEEEEECccchhhh-h-HHHHHHHHHHhcCC-CEE
Confidence 44 79999999999998554444 44444431 48999999999986543 1 12235677778885 899
Q ss_pred EEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 606 ETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~Ile 628 (663)
+|||++|.||+++|++|.+.+..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999876643
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.83 E-value=5.9e-21 Score=192.25 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=120.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh----------hHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN----------MTRVY 528 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs----------l~~~~ 528 (663)
.+|+|+|.+|||||||+++|.+..+.....++++.+.....+.+++. .+.||||||+..+.. +...|
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~---~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH---LIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE---EEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe---EEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 48999999999999999999998777777788888888888887763 799999999987753 56677
Q ss_pred H--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 529 Y--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 529 ~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE 606 (663)
+ +++|++|+|||+++...+..+..| +.. .++|+|||+||+|+...+ . .......++..+++ ++++
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~-------~~~pvilv~NK~Dl~~~~-~-~~~~~~~l~~~lg~-~vi~ 145 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHLYLTSQ---LFE-------LGKPVVVALNMMDIAEHR-G-ISIDTEKLESLLGC-SVIP 145 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT-------SCSCEEEEEECHHHHHHT-T-CEECHHHHHHHHCS-CEEE
T ss_pred HhhCCCCEEEEEeeCCCchhHHHHHHH---HHH-------cCCCEEEEEEChhcCCcC-C-cHHHHHHHHHHcCC-CEEE
Confidence 7 899999999999986555443333 331 358999999999986543 1 12234567777885 8999
Q ss_pred EeCCCCcCHHHHHHHHHHH
Q psy4094 607 TSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~ 625 (663)
|||++|.||+++|++|++.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=3.2e-20 Score=199.40 Aligned_cols=162 Identities=13% Similarity=0.149 Sum_probs=120.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCc----------cchhhhH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ----------ERFGNMT 525 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ----------Erfrsl~ 525 (663)
..+||+|+|++|||||||+++|++..+. ....++++.++....+.+++. .++||||+|+ +.|..++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ---EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE---EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe---EEEEEECCCcCcCccccchHHHHHHHH
Confidence 3589999999999999999999998764 445566777887778887774 5899999998 6666655
Q ss_pred H-HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HHHH---cC
Q psy4094 526 R-VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-FIKE---HN 600 (663)
Q Consensus 526 ~-~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-lak~---~g 600 (663)
. .+++.+|++|+|||++++.+++.+ .|+..+.. .++|+|||+||+|+...+ .+..+++.+ +... .+
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVDKD-ESTMKEFEENIRDHFQFLD 321 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSCCC-TTHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCCcc-hHHHHHHHHHHHHhcccCC
Confidence 4 488999999999999999999886 57766653 468999999999997654 333333322 2222 23
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
.+++++|||++|.||+++|+.+.+.+..+.
T Consensus 322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 468999999999999999999998876543
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.82 E-value=4.6e-20 Score=185.18 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=125.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh------hHHHHH--
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN------MTRVYY-- 529 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs------l~~~~~-- 529 (663)
.++|+|+|++|||||||+++|.+..+.....++++.++....+.+.+. .+.|||+||+..+.. ++..|+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~---~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK---EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE---EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc---eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 489999999999999999999998887677888888888888887764 599999999988766 677777
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
.++|++|+|||+++. .....|...+... ..+|+|+|+||+|+...+ .+.. ....++..+++ ++++|||
T Consensus 80 ~~~d~vi~v~D~~~~---~~~~~~~~~~~~~------~~~p~ilv~NK~Dl~~~~-~~~~-~~~~l~~~lg~-~~~~~Sa 147 (271)
T 3k53_A 80 GNADVIVDIVDSTCL---MRNLFLTLELFEM------EVKNIILVLNKFDLLKKK-GAKI-DIKKMRKELGV-PVIPTNA 147 (271)
T ss_dssp TCCSEEEEEEEGGGH---HHHHHHHHHHHHT------TCCSEEEEEECHHHHHHH-TCCC-CHHHHHHHHSS-CEEECBG
T ss_pred cCCcEEEEEecCCcc---hhhHHHHHHHHhc------CCCCEEEEEEChhcCccc-ccHH-HHHHHHHHcCC-cEEEEEe
Confidence 689999999999875 3334455555431 228999999999986433 1121 26677888885 8999999
Q ss_pred CCCcCHHHHHHHHHHHHHhh
Q psy4094 610 KDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 610 KtGeNVeELFe~IIr~Ile~ 629 (663)
++|.|++++|++|.+.+...
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999887544
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.81 E-value=1.6e-19 Score=194.88 Aligned_cols=163 Identities=14% Similarity=0.187 Sum_probs=124.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCC-CCCccccceeeeceeEEEecCCceeEEEEEEeCCC----------ccchhhhH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQF-FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG----------QERFGNMT 525 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~-fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG----------QErfrsl~ 525 (663)
..+||+|+|++|||||||+++|++.. +.....++++.++....+.+++. .++||||+| +++|..++
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ---EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE---EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc---eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 45899999999999999999999765 33455667777887778887764 789999999 78888776
Q ss_pred HH-HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc----C
Q psy4094 526 RV-YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH----N 600 (663)
Q Consensus 526 ~~-~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~----g 600 (663)
.. +++.||++|+|||+++...... ..|+..+.. .++|+|||+||+|+...+ .+..+++.+.+... +
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-------~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 341 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-------AGKAVVIVVNKWDAVDKD-ESTMKEFEENIRDHFQFLD 341 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSCCC-SSHHHHHHHHHHHHCGGGT
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-------cCCCEEEEEEChhcCCCc-hHHHHHHHHHHHHhcccCC
Confidence 64 7899999999999998655433 355555543 458999999999998765 45566666666654 3
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHHhhhh
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k 631 (663)
.++|++|||++|.||+++|++|++.+..+..
T Consensus 342 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 342 YAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999998766543
No 127
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.79 E-value=1e-19 Score=191.21 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=95.7
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT----------RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVT----------d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
+.++|||++||++|+.+|..||++++++|+|||++ +..+|+....|+..+.. .....++|+||||||
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~---~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT---YPWFQNSSVILFLNK 243 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT---SGGGTTCEEEEEEEC
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh---hhccCCceEEEEEEC
Confidence 78999999999999999999999999999999776 55666666666665543 333467999999999
Q ss_pred CCCCCCCC---------------CCCHHHHHHHHH----------HcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 578 CDQPKEGI---------------ANNPAKIDEFIK----------EHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 578 sDL~der~---------------~Vs~eei~qlak----------~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
+||..++. .+..+++.+++. ..+ +.+++|||+++.||+++|..+.+.|+...
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 99854331 357788888753 233 46889999999999999999999998753
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=5.3e-19 Score=190.09 Aligned_cols=152 Identities=22% Similarity=0.338 Sum_probs=109.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccc---------hhhhHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER---------FGNMTRVYY 529 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr---------frsl~~~~~ 529 (663)
+|+|||.+|||||||+++|++.... ....++++.++....+.+++. .++||||+|++. ++.++..++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK---TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE---EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe---EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 7999999999999999999987654 355677777888888888774 689999999764 456678899
Q ss_pred hcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHHcCCCeEEE
Q psy4094 530 KEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKI-DEFIKEHNFSGWFE 606 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei-~qlak~~g~i~ffE 606 (663)
++||++|+|||++++.++.. +..|+.. .++|+|||+||+|+... . ..++ .+++ .+++..+++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~----------~~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~ 144 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK----------STVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIP 144 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH----------HTCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEE
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEE
Confidence 99999999999998766543 2233321 24899999999998532 0 1223 3443 456546899
Q ss_pred EeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 607 TSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Ile~ 629 (663)
+||++|.|++++|++|++.+.+.
T Consensus 145 iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 145 VSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EeccCCCCHHHHHHHHHHhcccc
Confidence 99999999999999999988753
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.78 E-value=7e-19 Score=181.43 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=113.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccc--------hhhhHHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER--------FGNMTRV 527 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr--------frsl~~~ 527 (663)
...+|+|+|++|||||||+++|++..+.. ...+..+.+.....+..+ .+.++||||||+.+ +......
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~---~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG---RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET---TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC---CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 34689999999999999999999987753 233333323222223322 36899999999876 5566777
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHH-HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH-cCCCeEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWK-QDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE-HNFSGWF 605 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wi-eeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~-~g~i~ff 605 (663)
+++.+|++|+|||++++.+... .|+ ..+... ..++|+|||+||+|+.... . .+..++.. .++..++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-----~~~~p~ilV~NK~Dl~~~~-~----~~~~~~~~~~~~~~~~ 150 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPL-----VGKVPILLVGNKLDAAKYP-E----EAMKAYHELLPEAEPR 150 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-----TTTSCEEEEEECGGGCSSH-H----HHHHHHHHTSTTSEEE
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-----cCCCCEEEEEECcccCCch-H----HHHHHHHHhcCcCcEE
Confidence 8999999999999998766553 454 455432 1368999999999986533 1 02233333 3545799
Q ss_pred EEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 606 ETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
++||++|.|++++|++|.+.+...
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l~~~ 174 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALMPEG 174 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred EEeCCCCCCHHHHHHHHHHhcccC
Confidence 999999999999999998876543
No 130
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.78 E-value=1.3e-18 Score=195.59 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=117.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCC--CC-------------CccccceeeeceeEEEecC--CceeEEEEEEeCCCcc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQF--FS-------------PHYRATIGVDFALKVLSWD--HETIIRLQLWDIAGQE 519 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~--fs-------------ee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQE 519 (663)
...+|+|+|+.++|||||+++|+... +. .+..+.+++......+.+. +...+.++|||||||+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998621 11 1112333333333334332 2225889999999999
Q ss_pred chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc
Q psy4094 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH 599 (663)
Q Consensus 520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~ 599 (663)
+|...+..+++.+|++|+|||++++.+++....|...+. .++|+|+|+||+|+...+ ..+...++...+
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~---~~~v~~ei~~~l 151 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD---PERVAEEIEDIV 151 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEeeeccCccccc---HHHHHHHHHHHh
Confidence 999999999999999999999999999999988887665 358999999999997644 334455666666
Q ss_pred CC--CeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 600 NF--SGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 600 g~--i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
++ ..++++||++|.||+++|++|++.+..
T Consensus 152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 64 248999999999999999999988754
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.78 E-value=6.5e-19 Score=193.04 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=101.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHH--------H
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRV--------Y 528 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~--------~ 528 (663)
.++|+|+|.+|||||||+++|++... .....++++.++....+.+++ +.+.||||+|+.++...+.. +
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g---~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK---TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT---EEEEEEC--------------------CC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC---eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 48999999999999999999998753 345566777788888888876 47999999999877655433 6
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
++++|++|+|||++++.+++.+..|...+... .++|+|+|+||+|+.... . .....+... +..++++||
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~-~---~~~~~l~~~-~~~~~i~vS 378 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANA-D---ALIRAIADG-TGTEVIGIS 378 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTT-H---HHHHHHHHH-HTSCEEECB
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCcc-c---hhHHHHHhc-CCCceEEEE
Confidence 78999999999999999887554444434321 158999999999997654 1 122334443 235799999
Q ss_pred CCCCcCHHHHHHHHHHHHH
Q psy4094 609 AKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Il 627 (663)
|++|.||+++|++|.+.+.
T Consensus 379 Aktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSHHHHHHHHTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999886
No 132
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.78 E-value=3e-19 Score=188.96 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=98.9
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR----------AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd----------~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
+.|+||||+||++|+.+|..||++++++|||||+++ ..+|+.+..|+..+..+ ....++|+||||||
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~---~~~~~~piiLv~NK 269 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN---KWFTDTSIILFLNK 269 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC---GGGTTSEEEEEEEC
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC---ccccCCcEEEEEEC
Confidence 789999999999999999999999999999999999 56688888887777642 22357999999999
Q ss_pred CCCCCCC--------------CCCCHHHHHHHHHH----------cCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 578 CDQPKEG--------------IANNPAKIDEFIKE----------HNFSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 578 sDL~der--------------~~Vs~eei~qlak~----------~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
+||..++ ..+..+++..++.. ...+.|++|||+++.||+++|.++++.|+...
T Consensus 270 ~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 270 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred cCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 9985322 13567888888873 12357999999999999999999999987643
No 133
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.78 E-value=2.7e-18 Score=193.24 Aligned_cols=162 Identities=17% Similarity=0.254 Sum_probs=120.2
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC--CCC-------------CccccceeeeceeEEEecC--CceeEEEEEEeCCCc
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ--FFS-------------PHYRATIGVDFALKVLSWD--HETIIRLQLWDIAGQ 518 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~--~fs-------------ee~~~TigiDf~~ktV~vd--ge~~vkLqIwDTpGQ 518 (663)
+...+|+|+|+.++|||||+++|+.. .+. .+..+++++......+.+. +...+.++|||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45689999999999999999999852 111 1112333333333333332 222588999999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE 598 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~ 598 (663)
++|...+..+++.+|++|||||++++.+++....|...+. .++|+|+|+||+|+.... ..+...++...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~---~~~v~~el~~~ 152 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD---VDRVKKQIEEV 152 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC---HHHHHHHHHHT
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--------CCCCEEEEEeccCccccC---HHHHHHHHHHh
Confidence 9999999999999999999999999999999999887654 358999999999997643 23445566666
Q ss_pred cCCC--eEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 599 HNFS--GWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 599 ~g~i--~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
+++. .++++||++|.||+++|++|++.+..
T Consensus 153 lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 153 LGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp SCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 6642 48999999999999999999988764
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.78 E-value=2.8e-18 Score=179.62 Aligned_cols=161 Identities=14% Similarity=0.200 Sum_probs=120.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh---------hhHHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG---------NMTRVY 528 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr---------sl~~~~ 528 (663)
.++|+|+|.+|||||||+++|++..+.....+..+.+.....+...+ +.+.+|||+|+..+. .....+
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY---FRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT---EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC---ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 47999999999999999999998765333233333333333443333 579999999985431 112234
Q ss_pred HhcCcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEE
Q psy4094 529 YKEAVGAFIVFDVTRAA--TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~--SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffE 606 (663)
+..+|++|+|||+++.. +++....|+..+...+ .++|+|+|+||+|+.... ..+++.+++...++ ++++
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-----~~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~-~~~~ 314 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-----KDLPFLVVINKIDVADEE---NIKRLEKFVKEKGL-NPIK 314 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-----TTSCEEEEECCTTTCCHH---HHHHHHHHHHHTTC-CCEE
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-----CCCCEEEEEECcccCChH---HHHHHHHHHHhcCC-CeEE
Confidence 45799999999999877 7888889999888643 168999999999997643 23456667776664 7999
Q ss_pred EeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 607 TSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
|||++|+||+++|++|++.+....
T Consensus 315 iSA~~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 315 ISALKGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EeCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999886543
No 135
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.78 E-value=1.5e-19 Score=191.40 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=95.8
Q ss_pred eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q psy4094 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT----------RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576 (663)
Q Consensus 507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVT----------d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGN 576 (663)
.+.|+||||+||++|+.+|..||++++++|||||++ +..+|+.+..|+..+..+ ....++|+|||||
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~---~~~~~~piiLvgN 258 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFMLFLN 258 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC---GGGSSCEEEEEEE
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc---cccCCCeEEEEEE
Confidence 589999999999999999999999999999999998 788999999998887642 1235799999999
Q ss_pred CCCCCCCCC-CC-------------------CHHHHHHHHHHc---------------CCCeEEEEeCCCCcCHHHHHHH
Q psy4094 577 KCDQPKEGI-AN-------------------NPAKIDEFIKEH---------------NFSGWFETSAKDNINIDDAAKT 621 (663)
Q Consensus 577 KsDL~der~-~V-------------------s~eei~qlak~~---------------g~i~ffEtSAKtGeNVeELFe~ 621 (663)
|+||..++. .+ ..+++..++... ..+.+++|||+++.||+++|.+
T Consensus 259 K~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~ 338 (354)
T 2xtz_A 259 KFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKL 338 (354)
T ss_dssp CHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHH
Confidence 999854321 01 146677775431 2234689999999999999999
Q ss_pred HHHHHHhhh
Q psy4094 622 LVQKILEND 630 (663)
Q Consensus 622 IIr~Ile~~ 630 (663)
+++.|+...
T Consensus 339 v~~~I~~~~ 347 (354)
T 2xtz_A 339 VDETLRRRN 347 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 136
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.77 E-value=5.2e-19 Score=186.31 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=123.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----chhhhHHHHHhc---
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----RFGNMTRVYYKE--- 531 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----rfrsl~~~~~r~--- 531 (663)
.+|+|||.++||||||+++|.+........+..+.+.....+.+++. ..+.||||+|+. .+..+...|++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC--ceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 47899999999999999999876543222222333333445666653 478999999964 355566667654
Q ss_pred CcEEEEEEeCCC---cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEEE
Q psy4094 532 AVGAFIVFDVTR---AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-SGWFET 607 (663)
Q Consensus 532 ADgaILVyDVTd---~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-i~ffEt 607 (663)
++++|+|||+++ +.+++.+..|+.+|..+. ....++|+|||+||+|+.... +.+.+++..+.. ..+|+|
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~--~~l~~~p~ilV~NK~Dl~~~~-----e~~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN--LRLTERPQIIVANKMDMPEAA-----ENLEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC--SSTTTSCBCBEEECTTSTTHH-----HHHHHHHHHCCSCCCBCCC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhh--hhhcCCCEEEEEECccCCCCH-----HHHHHHHHHhhcCCCEEEE
Confidence 999999999999 889999999999998652 123568999999999986532 456667777653 479999
Q ss_pred eCCCCcCHHHHHHHHHHHHHhh
Q psy4094 608 SAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~Ile~ 629 (663)
||++++||+++|.+|.+.+...
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSC
T ss_pred ECCCCcCHHHHHHHHHHHHhhC
Confidence 9999999999999999988654
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.76 E-value=2.3e-19 Score=194.12 Aligned_cols=158 Identities=22% Similarity=0.175 Sum_probs=119.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh-------HHH
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM-------TRV 527 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl-------~~~ 527 (663)
...++|+|+|+.|+|||||+++|++..+. ....++++.+...+.+.+.+. ..+.||||+|+++|..+ +..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI--GPVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT--EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC--CeEEEEECcCCCcccchhHHHHHHHHH
Confidence 45689999999999999999999988764 445566677888888888765 47999999999887654 566
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
+++++|++|+|||++.. .....|+..+... ++|+|+|+||+|+...+ ..+.+.+++..+++ +|++|
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~---~~~~~~~l~~~~g~-~v~~v 175 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM-------EIPFVVVVNKIDVLGEK---AEELKGLYESRYEA-KVLLV 175 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT-------TCCEEEECCCCTTTTCC---CTHHHHHSSCCTTC-CCCCC
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc-------CCCEEEEEeCcCCCCcc---HHHHHHHHHHHcCC-CEEEE
Confidence 89999999999999332 3345677777642 58999999999998765 22566677767775 89999
Q ss_pred eCCCCcCHHHHHHHHHHHHHhh
Q psy4094 608 SAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~Ile~ 629 (663)
||++|.|++++|++|++.+...
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999988554
No 138
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-18 Score=162.70 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=90.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCC---ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhc--
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSP---HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKE-- 531 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse---e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~-- 531 (663)
..++|+|+|+.|||||||+++|++..+.. .+.++++.++ . .+.+.|||++|++.+...+..++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D---GSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C---CTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c---CCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 45899999999999999999999987654 3344444333 1 2468999999999999888888887
Q ss_pred --CcEEEEEEeCC-CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 532 --AVGAFIVFDVT-RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 532 --ADgaILVyDVT-d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
+|++|+|||++ +..+|..+..|+..+..........++|+|||+||+|+...+
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 899999999998877654321122469999999999997754
No 139
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.76 E-value=9.8e-20 Score=195.98 Aligned_cols=160 Identities=14% Similarity=0.261 Sum_probs=113.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC--CCCCc-----------------------------cccceeeeceeEEEecCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ--FFSPH-----------------------------YRATIGVDFALKVLSWDHE 505 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~--~fsee-----------------------------~~~TigiDf~~ktV~vdge 505 (663)
..++|+|+|+.++|||||+++|+.. .+... ..++++++.....+...+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~- 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence 4689999999999999999999864 33211 134455555555555443
Q ss_pred eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCC
Q psy4094 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQPKEG 584 (663)
Q Consensus 506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~der 584 (663)
+.+.|||||||++|...+..+++.+|++|||||+++ .+|+.+..|..+.+.++......++ ++|||+||+|+....
T Consensus 84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 579999999999999999999999999999999999 7888777666555554322112234 589999999997631
Q ss_pred -----CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHHHH
Q psy4094 585 -----IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDAAK 620 (663)
Q Consensus 585 -----~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeELFe 620 (663)
.....+++..++..+++ ++|+++||++|.||.+++.
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 12234667788887773 5799999999999987654
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.76 E-value=4.2e-18 Score=183.98 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=114.9
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC-------------------------------CCCCccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ-------------------------------FFSPHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~-------------------------------~fsee~~~TigiDf~~ktV~vdg 504 (663)
...++|+++|+.++|||||+++|+.. .+..+..+++++++....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45689999999999999999999542 22334456778887777777665
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCccc---HHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAAT---FDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQ 580 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~S---Fe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL 580 (663)
..+.|||||||++|...+..++..||++|||+|++++.. |+....+.+.+... ...++| +|||+||+|+
T Consensus 95 ---~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~----~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 95 ---KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA----KTAGVKHLIVLINKMDD 167 (439)
T ss_pred ---eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH----HHcCCCeEEEEeecCCC
Confidence 479999999999999999999999999999999998643 22111222222111 113466 9999999998
Q ss_pred CCCC-----CCCCHHHHHHHHHHcCC-----CeEEEEeCCCCcCHHHHHH
Q psy4094 581 PKEG-----IANNPAKIDEFIKEHNF-----SGWFETSAKDNINIDDAAK 620 (663)
Q Consensus 581 ~der-----~~Vs~eei~qlak~~g~-----i~ffEtSAKtGeNVeELFe 620 (663)
.... .....+++..++..+++ ++|+++||++|.|++++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5421 22334556667666664 4799999999999999765
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=8.3e-19 Score=188.40 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=104.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc--------chhhhHHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE--------RFGNMTRVYY 529 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE--------rfrsl~~~~~ 529 (663)
.+|+|||.+|||||||+++|++..+. ....++++.+.....+.+.+. .++||||+|++ .++.++..++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~---~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY---DFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS---CCEEEC---------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc---eEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 58999999999999999999987654 233344455665666666553 68999999986 6778888999
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
++||++|+|||++++.++.. .|+..+.. ..++|+|||+||+|+...+.. +.+++ .+++..++++||
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~------~~~~pvilv~NK~D~~~~~~~-----~~~~~-~lg~~~~~~iSA 146 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY------RTKKPVVLAVNKLDNTEMRAN-----IYDFY-SLGFGEPYPISG 146 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT------TCCSCEEEEEECCCC-----C-----CCSSG-GGSSCCCEECBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH------HcCCCEEEEEECccCccchhh-----HHHHH-HcCCCCeEEEeC
Confidence 99999999999999877665 23333221 246899999999998654311 11222 345447899999
Q ss_pred CCCcCHHHHHHHHHHHHHh
Q psy4094 610 KDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 610 KtGeNVeELFe~IIr~Ile 628 (663)
++|.|+.++|++|++.+.+
T Consensus 147 ~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGG
T ss_pred cCCCChHHHHHHHHHhcCc
Confidence 9999999999999988764
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.75 E-value=8.5e-18 Score=178.86 Aligned_cols=167 Identities=20% Similarity=0.168 Sum_probs=117.3
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCc---cccceee------------eceeEEEecC--CceeEEEEEEeCCCc
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPH---YRATIGV------------DFALKVLSWD--HETIIRLQLWDIAGQ 518 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee---~~~Tigi------------Df~~ktV~vd--ge~~vkLqIwDTpGQ 518 (663)
...++|+|+|+.++|||||+++|++...... ...+++. +.......+. ......+.|||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 4568999999999999999999997543321 1111110 0000000111 111368999999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIK 597 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak 597 (663)
++|...+..++..+|++|||+|+++..++.....|+..+... ...|+|+|+||+|+.+.. .....+++.+++.
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc------CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988777778887766643 125899999999986532 0111223334443
Q ss_pred HcC--CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 598 EHN--FSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 598 ~~g--~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
.++ .+++|++||++|.||++||++|.+.+..
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 332 2579999999999999999999987644
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.75 E-value=4.9e-18 Score=185.78 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=114.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCC-------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQF-------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYY 529 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~-------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~ 529 (663)
..++|+++|+.++|||||+++|.+.. +..++.++++++.....+.+++ ..+.|||||||++|...+..++
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN---YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT---EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC---EEEEEEECCChHHHHHHHHHHH
Confidence 46899999999999999999999866 3455666677766666666654 5799999999999999999999
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHc-C--CCeEE
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEH-N--FSGWF 605 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~-g--~i~ff 605 (663)
..+|++|||||+++...-+... ++..+.. .++|+|+|+||+|+.... .....+++.+++... + ..+++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e-~l~~~~~-------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGE-HMLILDH-------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHH-HHHHHHH-------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred hhCCEEEEEEecCCCccHHHHH-HHHHHHH-------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 9999999999999854333322 2223332 348889999999997522 122345566666655 2 25799
Q ss_pred EEeCCCCcCHHHHHHHHHHHHH
Q psy4094 606 ETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 606 EtSAKtGeNVeELFe~IIr~Il 627 (663)
++||++|.||++|+++|.+.+.
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999999775
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=1.1e-17 Score=178.38 Aligned_cols=166 Identities=21% Similarity=0.189 Sum_probs=107.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC---CCCCcccc--ceeeeceeEEEec-------------C--Cc---eeEEEEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ---FFSPHYRA--TIGVDFALKVLSW-------------D--HE---TIIRLQL 512 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~---~fsee~~~--TigiDf~~ktV~v-------------d--ge---~~vkLqI 512 (663)
...++|+++|+.++|||||+++|.+. .+..++.+ |+.+.|....+.. + +. ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999853 44455556 4444444333321 1 11 1268999
Q ss_pred EeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCHH
Q psy4094 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNPA 590 (663)
Q Consensus 513 wDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~e 590 (663)
||||||++|...+...+..+|++|||||++++. .-+.. .++..+.. + ...|+|||+||+|+..... ....+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~-e~l~~~~~-l-----~~~~iivv~NK~Dl~~~~~~~~~~~ 158 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTK-EHLMALEI-L-----GIDKIIIVQNKIDLVDEKQAEENYE 158 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHH-HHHHHHHH-T-----TCCCEEEEEECTTSSCTTTTTTHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhH-HHHHHHHH-c-----CCCeEEEEEEccCCCCHHHHHHHHH
Confidence 999999999888877788899999999999754 22222 22222221 1 1247999999999976442 23456
Q ss_pred HHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 591 KIDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 591 ei~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
++.+++..+ ...++|++||++|.||++||++|.+.+..
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 677777653 23579999999999999999999886643
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.75 E-value=1.1e-19 Score=202.24 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=125.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
..+|+|+|+.++|||||+++|.+..+...+.++++.++....+.+++. ..+.|||||||+.|..++..+++.+|++||
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 368999999999999999999988777777888888888877777543 368999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HHHc-CCCeEEEEeCCCCc
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF---IKEH-NFSGWFETSAKDNI 613 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql---ak~~-g~i~ffEtSAKtGe 613 (663)
|||+++....+....|.. +. ..++|+|||+||+|+.........++...+ +..+ +.++||++||++|.
T Consensus 82 VVDa~dg~~~qt~e~l~~-~~-------~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~ 153 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQH-AK-------DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGE 153 (537)
T ss_dssp ECBSSSCCCHHHHHHHHH-HH-------TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSC
T ss_pred EEECCCCccHHHHHHHHH-HH-------HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCC
Confidence 999999887776655532 22 245899999999999764423233333222 1111 12479999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQKIL 627 (663)
Q Consensus 614 NVeELFe~IIr~Il 627 (663)
||+++|++|...+.
T Consensus 154 GI~eLle~I~~l~~ 167 (537)
T 3izy_P 154 NMMALAEATIALAE 167 (537)
T ss_dssp SSHHHHHHHHHHHT
T ss_pred CchhHHHHHHHhhh
Confidence 99999999988764
No 146
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=2.5e-17 Score=161.26 Aligned_cols=165 Identities=14% Similarity=0.130 Sum_probs=111.6
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCCCcccc--ceeeeceeEEEecCCceeEEEEEEeCCCc-----------cchh
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRA--TIGVDFALKVLSWDHETIIRLQLWDIAGQ-----------ERFG 522 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~--TigiDf~~ktV~vdge~~vkLqIwDTpGQ-----------Erfr 522 (663)
...++|+|||..|||||||+++|++..+.....+ +++.++....+.+++ ..+.||||||. ..+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE---TELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT---EEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC---ceEEEEECCCccCCCCCHHHHHHHHH
Confidence 4568999999999999999999999887665555 566666666777766 37899999994 3445
Q ss_pred hhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHH
Q psy4094 523 NMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN------PAKIDEFI 596 (663)
Q Consensus 523 sl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs------~eei~qla 596 (663)
..+..+++.+|++|+|||+++.... ...|+..+...+.. ....|+|||+||+|+.... .+. .+.++.++
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~--~~~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGE--RARSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHH--HHGGGEEEEEECGGGC-------------CHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhh--hccceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHH
Confidence 5555666788999999999864442 12333333322110 1235899999999986543 111 24678888
Q ss_pred HHcCCCeEEEEeCCCC-----cCHHHHHHHHHHHHHhh
Q psy4094 597 KEHNFSGWFETSAKDN-----INIDDAAKTLVQKILEN 629 (663)
Q Consensus 597 k~~g~i~ffEtSAKtG-----eNVeELFe~IIr~Ile~ 629 (663)
...+. .|+.+++..+ .+|.+||..|.+.+.+.
T Consensus 179 ~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 179 DIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88885 6888877654 68999999888776543
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=5.6e-18 Score=167.57 Aligned_cols=164 Identities=9% Similarity=0.121 Sum_probs=111.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC-CCCccccc-eeeeceeEEEecCCceeEEEEEEeCCCccchhh----------
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF-FSPHYRAT-IGVDFALKVLSWDHETIIRLQLWDIAGQERFGN---------- 523 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~-fsee~~~T-igiDf~~ktV~vdge~~vkLqIwDTpGQErfrs---------- 523 (663)
...++|+|+|+.|||||||+++|++.. +...+.++ ++.++....+.+++ ..+.||||||+..+..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN---REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT---EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC---CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 345899999999999999999999876 44444444 55566666666665 4799999999876532
Q ss_pred -hHHHHHhcCcEEEEEEeCCCcccH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEe-CCCCCCCCCCCCH-------HHHH
Q psy4094 524 -MTRVYYKEAVGAFIVFDVTRAATF-DAVLKWKQDLDAKVTLPDGNPIPCVLLAN-KCDQPKEGIANNP-------AKID 593 (663)
Q Consensus 524 -l~~~~~r~ADgaILVyDVTd~~SF-e~L~~wieeL~~~~~~~~~~~IPIILVGN-KsDL~der~~Vs~-------eei~ 593 (663)
....+++.+|++|+|||+++.... ..+..|+..+. . .....|+|+|+| |+|+.... +.. .++.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~---~--~~~~~~~i~vv~nK~Dl~~~~--~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF---G--EDAMGHTIVLFTHKEDLNGGS--LMDYMHDSDNKALS 169 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHH---C--GGGGGGEEEEEECGGGGTTCC--HHHHHHHCCCHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHh---C--chhhccEEEEEEcccccCCcc--HHHHHHhcchHHHH
Confidence 223367899999999999862222 22333443332 1 011246666665 99997532 111 3345
Q ss_pred HHHHHcCCCe--E--EEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 594 EFIKEHNFSG--W--FETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 594 qlak~~g~i~--f--fEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
.++...+... | ++|||++|.|++++|++|++.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 170 KLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 5666665321 3 7899999999999999999988664
No 148
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=6.6e-18 Score=185.41 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=119.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc-chh--------hhHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE-RFG--------NMTRVY 528 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-rfr--------sl~~~~ 528 (663)
++|+|+|.+|||||||+++|++..+. ....++++.++....+.+++ +.+.||||+|+. ++. .....+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g---~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT---EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC---eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 79999999999999999999987543 44556677788888888876 468999999998 654 234568
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
++.+|++|+|||++++.+++... +++.+ .++|+|||+||+|+... +..+++..++. .+ .++|+||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l---------~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~-~~~i~iS 385 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI---------KNKRYLVVINKVDVVEK---INEEEIKNKLG-TD-RHMVKIS 385 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH---------TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CS-TTEEEEE
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh---------cCCCEEEEEECcccccc---cCHHHHHHHhc-CC-CcEEEEE
Confidence 89999999999999998887643 22222 25899999999999653 34455555543 22 4799999
Q ss_pred CCCCcCHHHHHHHHHHHHHh
Q psy4094 609 AKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile 628 (663)
|++|.||+++|++|.+.+..
T Consensus 386 Aktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 386 ALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp GGGTCCHHHHHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998764
No 149
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.74 E-value=7.7e-18 Score=177.96 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=95.8
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCC----------CcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVT----------RAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVT----------d~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
+.|+|||++||++|+.+|..||++++++|||||++ +..+|.....|+..+..+ ....++|+||||||
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~---~~~~~~piiLv~NK 237 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN---EFLKGAVKLIFLNK 237 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC---GGGTTSEEEEEEEC
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh---hccCCCeEEEEEEC
Confidence 68999999999999999999999999999999999 678888888887777642 23357999999999
Q ss_pred CCCCCCC--------------CCCCHHHHHHHHHH-c-------------------------CCCeEEEEeCCCCcCHHH
Q psy4094 578 CDQPKEG--------------IANNPAKIDEFIKE-H-------------------------NFSGWFETSAKDNINIDD 617 (663)
Q Consensus 578 sDL~der--------------~~Vs~eei~qlak~-~-------------------------g~i~ffEtSAKtGeNVeE 617 (663)
+||..++ .....+++.+++.. + ..+.+++|||+++.||+.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 9985421 11346666665543 2 125689999999999999
Q ss_pred HHHHHHHHHHh
Q psy4094 618 AAKTLVQKILE 628 (663)
Q Consensus 618 LFe~IIr~Ile 628 (663)
+|..+.+.|+.
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 150
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=7.3e-18 Score=179.21 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=117.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhC-------CCC---------CccccceeeeceeEEEecCCceeEEEEEEeCCCccch
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQ-------FFS---------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~-------~fs---------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf 521 (663)
.++|+++|+.++|||||+++|++. .+. .+....++++.....+...+ ..+.|||||||++|
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA---RHYAHTDCPGHADY 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS---CEEEEEECSSHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC---eEEEEEECCChHHH
Confidence 489999999999999999999863 111 11234445554433333332 57999999999999
Q ss_pred hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHHHH
Q psy4094 522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFIKE 598 (663)
Q Consensus 522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qlak~ 598 (663)
...+..+++.+|++|||||+++....+....| ..+.. .++| +|+|+||+|+.... .....+++.+++..
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-------IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766665555 33332 3578 78999999987421 11223567778887
Q ss_pred cCC----CeEEEEeCCCCcC----------HHHHHHHHHHHHH
Q psy4094 599 HNF----SGWFETSAKDNIN----------IDDAAKTLVQKIL 627 (663)
Q Consensus 599 ~g~----i~ffEtSAKtGeN----------VeELFe~IIr~Il 627 (663)
+++ ++|+++||++|.| +.+||+.|.+.+.
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 774 5899999999876 8899998887664
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=4.9e-17 Score=174.80 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=111.2
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhh------------
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNM------------ 524 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl------------ 524 (663)
.++|+|||++|||||||+++|++.... ....++++.+.....+.+++. .+.+|||+|+.++...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~---~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR---KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE---EEEESSCSCC-----------CCSCCHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE---EEEEEECCCCccccccchhhHHHHHHHH
Confidence 489999999999999999999987653 334455666676677777774 5899999998543221
Q ss_pred HHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HHHH---cC
Q psy4094 525 TRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-FIKE---HN 600 (663)
Q Consensus 525 ~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-lak~---~g 600 (663)
...+++.+|++++|||++++.+++.. .+...+.. .+.|+|+|+||+|+.+.+ ....+++.. +... .+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-------~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 327 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-------RGRASVVVFNKWDLVVHR-EKRYDEFTKLFREKLYFID 327 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHHCGGGT
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECccCCCch-hhHHHHHHHHHHHHhccCC
Confidence 13578899999999999998777653 23333331 458999999999997644 233333332 2232 23
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
..+++++||++|.||+++|+.|.+.+...
T Consensus 328 ~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 328 YSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45899999999999999999999877554
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=6e-18 Score=179.91 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=116.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC--------CCCC---------ccccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ--------FFSP---------HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~--------~fse---------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
...++|+++|+.++|||||+++|++. .+.. +...+++++.....+...+ ..+.|||||||
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~~~iiDtpG~ 85 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK---RHYSHVDCPGH 85 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS---CEEEEEECCCS
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC---eEEEEEECCCh
Confidence 45689999999999999999999872 2211 1123344444333333332 57899999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHH
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEF 595 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~ql 595 (663)
++|...+..++..+|++|+|||++++...+. ..|+..+.. .++| +|+|+||+|+.... .....+++.++
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-------~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-------VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-------TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999998776554 455555542 2578 89999999997421 11123456777
Q ss_pred HHHcCC----CeEEEEeCCCCcC------------------HHHHHHHHHHHHH
Q psy4094 596 IKEHNF----SGWFETSAKDNIN------------------IDDAAKTLVQKIL 627 (663)
Q Consensus 596 ak~~g~----i~ffEtSAKtGeN------------------VeELFe~IIr~Il 627 (663)
+..+++ .+++++||++|.| +.+|++.|.+.+.
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 877764 6899999999988 6777777766553
No 153
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.73 E-value=7.4e-18 Score=181.65 Aligned_cols=121 Identities=16% Similarity=0.161 Sum_probs=97.3
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR----------AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd----------~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
+.|+||||+||++|+.+|..||++++++|||||+++ ..+|+.+..|+..+... ....++||||||||
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~---~~~~~~piiLvgNK 293 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN---RWLRTISVILFLNK 293 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC---TTCSSCCEEEEEEC
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc---ccCCCCeEEEEEEC
Confidence 789999999999999999999999999999999999 89999999999888742 23467999999999
Q ss_pred CCCCCCCC--CC---------------------------CHHHHHHHH-----HHc-------CCCeEEEEeCCCCcCHH
Q psy4094 578 CDQPKEGI--AN---------------------------NPAKIDEFI-----KEH-------NFSGWFETSAKDNINID 616 (663)
Q Consensus 578 sDL~der~--~V---------------------------s~eei~qla-----k~~-------g~i~ffEtSAKtGeNVe 616 (663)
+||..++. .+ ..+++..|+ ..+ ..+.+++|||+++.||+
T Consensus 294 ~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~ 373 (402)
T 1azs_C 294 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR 373 (402)
T ss_dssp HHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHH
T ss_pred hhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHH
Confidence 99854331 01 135566654 221 12467899999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy4094 617 DAAKTLVQKILENDK 631 (663)
Q Consensus 617 ELFe~IIr~Ile~~k 631 (663)
++|.++.+.|+....
T Consensus 374 ~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 374 RVFNDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876654
No 154
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.72 E-value=6.6e-18 Score=179.27 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=91.2
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCC----------cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTR----------AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd----------~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNK 577 (663)
+.++||||+||++|+.+|..||++++++|||||+++ ..+|..+..|+..+..+ ....++|+|||+||
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~---~~~~~~piILv~NK 277 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN---RVFSNVSIILFLNK 277 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC---GGGTTSEEEEEEEC
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc---hhhCCCCEEEEEEC
Confidence 789999999999999999999999999999999999 78899998898877642 22357999999999
Q ss_pred CCCCCCC--------------C-CCCHHHHHHHHH-----------HcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 578 CDQPKEG--------------I-ANNPAKIDEFIK-----------EHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 578 sDL~der--------------~-~Vs~eei~qlak-----------~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
+||..++ . .+..+++..++. ..+ +.|++|||+++.||+++|.++++.|+...
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 9985321 0 256778887762 223 47899999999999999999999987654
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.72 E-value=2.3e-17 Score=175.62 Aligned_cols=167 Identities=20% Similarity=0.184 Sum_probs=114.3
Q ss_pred CcceeEEEEEeCCCCCHHHHHHHHHhC---CCCCccccceee--eceeEEEec-------------C--Cc---eeEEEE
Q psy4094 455 REFLYKILVIGELGAGKTSIIKRYVHQ---FFSPHYRATIGV--DFALKVLSW-------------D--HE---TIIRLQ 511 (663)
Q Consensus 455 ~d~~~KIVVLGd~GVGKTSLInrLlg~---~fsee~~~Tigi--Df~~ktV~v-------------d--ge---~~vkLq 511 (663)
....++|+++|+.++|||||+++|.+. .+..++.+.+++ .|....+.. + +. ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 345689999999999999999999953 344555664443 443333321 1 11 126899
Q ss_pred EEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCC-CCCH
Q psy4094 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGI-ANNP 589 (663)
Q Consensus 512 IwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~-~Vs~ 589 (663)
|||||||++|...+...+..+|++|||||+++.. .-+....| ..+... ...|+|+|+||+|+..... ....
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~------~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII------GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH------TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc------CCCcEEEEEECccCCCHHHHHHHH
Confidence 9999999999888888888999999999999754 22222222 222221 1257999999999875320 1123
Q ss_pred HHHHHHHHHc--CCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 590 AKIDEFIKEH--NFSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 590 eei~qlak~~--g~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
+++.+++... ...++|++||++|.||++||++|.+.+..
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 4455555542 23589999999999999999999886643
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.72 E-value=8.6e-18 Score=183.11 Aligned_cols=157 Identities=14% Similarity=0.150 Sum_probs=103.0
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC-------------------------------CCCccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF-------------------------------FSPHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~-------------------------------fsee~~~TigiDf~~ktV~vdg 504 (663)
...+||+|+|+.++|||||+++|+... ...+..++++++.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 346999999999999999999997541 1122334555555555555443
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHH--HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAV--LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L--~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
+.+.|||||||++|...+..++.++|++|||||++++.++..+ ..|..++...+... ...|+|||+||+|+..
T Consensus 111 ---~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 ---ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVD 185 (483)
T ss_dssp ---CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGT
T ss_pred ---ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCccc
Confidence 5799999999999999999999999999999999997654331 11111111111111 1246999999999976
Q ss_pred CCCCCC----HHHHHHHHHHcCC----CeEEEEeCCCCcCHHHH
Q psy4094 583 EGIANN----PAKIDEFIKEHNF----SGWFETSAKDNINIDDA 618 (663)
Q Consensus 583 er~~Vs----~eei~qlak~~g~----i~ffEtSAKtGeNVeEL 618 (663)
.+ ... .+++..++..+++ ++|++|||++|.||+++
T Consensus 186 ~~-~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 186 WS-QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp TC-HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred ch-HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 33 122 2344445554443 57999999999999853
No 157
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.72 E-value=9.1e-18 Score=183.35 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=108.3
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHH--------H
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRV--------Y 528 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~--------~ 528 (663)
.++|+|+|.+|||||||+++|++..+. ....++++.++....+.+++ +.+.||||+|+..+...+.. +
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g---~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG---IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT---EEEEECC--------------------CC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC---EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 479999999999999999999986543 44556777788777888776 46899999998766544433 5
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
+..+|++|+|||++++.++.. ..|+..+. ..|+|+|+||+|+.... .+. .+..+. ...++++||
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~---------~~piivV~NK~Dl~~~~-~~~--~~~~~~---~~~~~i~iS 364 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK---------HRPLILVMNKIDLVEKQ-LIT--SLEYPE---NITQIVHTA 364 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT---------TSCEEEEEECTTSSCGG-GST--TCCCCT---TCCCEEEEB
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc---------CCcEEEEEECCCCCcch-hhH--HHHHhc---cCCcEEEEE
Confidence 788999999999999887766 45555443 26999999999997644 111 111111 235799999
Q ss_pred CCCCcCHHHHHHHHHHHHHhh
Q psy4094 609 AKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile~ 629 (663)
|++|.||+++|++|.+.+...
T Consensus 365 Aktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 365 AAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TTTTBSHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=1.3e-17 Score=179.21 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=108.1
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC---CCCc------------------------------cccceeeeceeEEEec
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF---FSPH------------------------------YRATIGVDFALKVLSW 502 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~---fsee------------------------------~~~TigiDf~~ktV~v 502 (663)
+..++|+|+|+.++|||||+++|+.+. +... ..++++++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999998643 1100 0122333333333333
Q ss_pred CCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCC
Q psy4094 503 DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQP 581 (663)
Q Consensus 503 dge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~ 581 (663)
++ ..+.|||||||++|...+..++..+|++|||||++++...+. ..|+..+.. .++ ++|||+||+|+.
T Consensus 102 ~~---~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~-------~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AK---RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL-------LGIKHIVVAINKMDLN 170 (434)
T ss_dssp SS---EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH-------TTCCEEEEEEECTTTT
T ss_pred CC---ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEEcCcCC
Confidence 33 579999999999999999999999999999999998765444 344444432 134 599999999997
Q ss_pred CCC---CCCCHHHHHHHHHHcC--C--CeEEEEeCCCCcCHHHHHH
Q psy4094 582 KEG---IANNPAKIDEFIKEHN--F--SGWFETSAKDNINIDDAAK 620 (663)
Q Consensus 582 der---~~Vs~eei~qlak~~g--~--i~ffEtSAKtGeNVeELFe 620 (663)
... .....+++..++..++ . .+++++||++|.||+++|.
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 522 1112355667777776 2 5799999999999998543
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.71 E-value=3.3e-17 Score=181.59 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=89.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC------------------CC----CccccceeeeceeEEEecCCceeEEEEEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF------------------FS----PHYRATIGVDFALKVLSWDHETIIRLQLW 513 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~------------------fs----ee~~~TigiDf~~ktV~vdge~~vkLqIw 513 (663)
....+|+|+|++|||||||+++|+... +. .+..+++++......+.+.+ +.++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~i~li 87 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD---YLINLL 87 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT---EEEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC---EEEEEE
Confidence 356799999999999999999997211 10 01123344444444555543 689999
Q ss_pred eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
|||||.+|...+..+++.+|++|+|+|++++..++....|.. +. ..++|+|+|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~-------~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CR-------LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HH-------TTTCCEEEEEECTTSCCS
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HH-------HcCCCEEEEEeCCCCccc
Confidence 999999999999999999999999999999988888776643 32 135899999999999653
No 160
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=2.4e-18 Score=181.63 Aligned_cols=166 Identities=16% Similarity=0.286 Sum_probs=100.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC-CCCCcc--------ccceeeeceeEEEecCCceeEEEEEEeCCCc-------cc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ-FFSPHY--------RATIGVDFALKVLSWDHETIIRLQLWDIAGQ-------ER 520 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~-~fsee~--------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ-------Er 520 (663)
..++|+|||+.|+|||||++++++. .+...+ .+++++++....+..++. .+.|+||||+|+ +.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~-~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGV-KLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CE-EEEEEEEC-------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCc-ccceEEEEeccccccCccHHH
Confidence 4589999999999999999997654 333333 256666655544544443 578999999999 77
Q ss_pred hhhhHH-------HHHhcCcEE-----------EEEEeCCC-cccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 521 FGNMTR-------VYYKEAVGA-----------FIVFDVTR-AATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 521 frsl~~-------~~~r~ADga-----------ILVyDVTd-~~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
|..++. .|++.++++ ++||++++ ..++..+. .|+..+. .++|+|+|+||+|+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~--------~~~piIlV~NK~Dl 186 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH--------NKVNIVPVIAKADT 186 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC--------S-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc--------cCCCEEEEEECCCC
Confidence 888887 888877665 47787776 56666665 4444332 46899999999998
Q ss_pred CCCCCCCCH--HHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhhhhh
Q psy4094 581 PKEGIANNP--AKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQA 634 (663)
Q Consensus 581 ~der~~Vs~--eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~~~ 634 (663)
...+ .+.. +++..++..+++ +||++||++|.| ++.|.++++.|........
T Consensus 187 ~~~~-ev~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v 239 (361)
T 2qag_A 187 LTLK-ERERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKASIPFSV 239 (361)
T ss_dssp SCHH-HHHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred CCHH-HHHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence 7543 2222 456667766774 899999999999 9999999999987665433
No 161
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.70 E-value=1.3e-17 Score=166.99 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=106.3
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc------cccce-----------------e---eece--------------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH------YRATI-----------------G---VDFA-------------- 496 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee------~~~Ti-----------------g---iDf~-------------- 496 (663)
..++|+|+|.+|||||||+++|++..+.+. +.++. | .++.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999877421 12220 0 0000
Q ss_pred ---------eEEEecCCceeEEEEEEeCCCcc-------------chhhhHHHHHhcCcEEE-EEEeCCCcccHHHHHHH
Q psy4094 497 ---------LKVLSWDHETIIRLQLWDIAGQE-------------RFGNMTRVYYKEAVGAF-IVFDVTRAATFDAVLKW 553 (663)
Q Consensus 497 ---------~ktV~vdge~~vkLqIwDTpGQE-------------rfrsl~~~~~r~ADgaI-LVyDVTd~~SFe~L~~w 553 (663)
...+.+.+.....+.||||||+. .+..++..|++.++++| +|+|+++......+..|
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 00011100001469999999963 46678888999999877 69999886655554455
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHH--cCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 554 KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE--HNFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 554 ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~--~g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
+..+. ..+.|+|+|+||+|+.... ....+.+...... .++.+++++||++|.|++++|++|.+.
T Consensus 185 ~~~~~-------~~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 185 AKEVD-------PQGQRTIGVITKLDLMDEG-TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHC-------TTCSSEEEEEECGGGSCTT-CCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHhC-------CCCCeEEEEEEccccCCCC-chHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 55443 2468999999999997654 2223322211101 133468899999999999999999874
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.70 E-value=1.5e-16 Score=168.65 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=113.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc---------chhhhHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE---------RFGNMTRVYYK 530 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE---------rfrsl~~~~~r 530 (663)
.|+|+|.+|||||||+++|.+..+........+.++....+.+++. .+.+|||+|+. .|+..+. .+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~---~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR---KIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE---EEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE---EEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 4999999999999999999987765444555666777788888773 68999999972 2333333 578
Q ss_pred cCcEEEEEEeCCCcc--cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHc-C-CCeEEE
Q psy4094 531 EAVGAFIVFDVTRAA--TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH-N-FSGWFE 606 (663)
Q Consensus 531 ~ADgaILVyDVTd~~--SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~-g-~i~ffE 606 (663)
.+|++|+|||++++. .+..+..|...+... ...++|+|+|+||+|+.........+.+..++..+ . ...+++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREI----GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 899999999999887 667777777666643 23468999999999986532000012233344554 2 236899
Q ss_pred EeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 607 TSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 607 tSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
+||++|.|+++++++|.+.+....
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EECCCCcCHHHHHHHHHHHhcccC
Confidence 999999999999999998776543
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.70 E-value=2.2e-18 Score=187.52 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=96.3
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh--CCCC-----------------------------CccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH--QFFS-----------------------------PHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg--~~fs-----------------------------ee~~~TigiDf~~ktV~vdg 504 (663)
...++|+++|+.++|||||+++|+. +.+. .+....++++.....+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999974 2221 11123445555545555554
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCc---ccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRA---ATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQ 580 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~---~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL 580 (663)
..+.|||||||++|...+..++..+|++|||||++++ .+|+....|.+.+.... ..++| +|||+||+|+
T Consensus 121 ---~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 121 ---RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDE 193 (467)
T ss_dssp ---EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTS
T ss_pred ---eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccC
Confidence 5799999999999999999999999999999999986 34443333433332211 13577 9999999999
Q ss_pred CCCC-----CCCCHHHHHHHHHHc-CC-----CeEEEEeCCCCcCHHHHH
Q psy4094 581 PKEG-----IANNPAKIDEFIKEH-NF-----SGWFETSAKDNINIDDAA 619 (663)
Q Consensus 581 ~der-----~~Vs~eei~qlak~~-g~-----i~ffEtSAKtGeNVeELF 619 (663)
.... +....+++..++..+ ++ ++|+++||++|.||.++|
T Consensus 194 ~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 194 PSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 6422 112234567777766 43 469999999999998866
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.69 E-value=7.6e-17 Score=152.42 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=102.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc----------chhhhHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE----------RFGNMTRV 527 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE----------rfrsl~~~ 527 (663)
.++|+|+|.+|||||||++++++..+...+.++.|..+....+.+++. +.+||++|+. .|+.....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~----~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG----KRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT----EEEEECCCCC------CCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC----EEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 479999999999999999999987655455566665554444444443 7899999984 24444455
Q ss_pred HH---hcCcEEEEEEeCCCcccHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHHcC-
Q psy4094 528 YY---KEAVGAFIVFDVTRAATFDA--VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IANNPAKIDEFIKEHN- 600 (663)
Q Consensus 528 ~~---r~ADgaILVyDVTd~~SFe~--L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~Vs~eei~qlak~~g- 600 (663)
++ ..++++++|+|++++.++.. +..|+.. .++|+++|+||+|+.... .....+.+..++...+
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 55 46899999999998776643 3334321 348999999999975421 0111345555665554
Q ss_pred CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 601 FSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
.+.+++|||+++.|+++++++|.+.+.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 356889999999999999999988653
No 165
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.69 E-value=3.4e-17 Score=168.25 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=108.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCcc-c--------hhhhHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE-R--------FGNMTRV 527 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-r--------frsl~~~ 527 (663)
..+|+|||++|||||||+++|++..+.. ...+..+.+...-.+..+ ...+.+|||+|+. . +......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~---~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG---AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET---TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC---CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3589999999999999999999876542 122222212112223322 2579999999997 3 2233345
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
+++.+|++++|+|+++ +.....|+..... ..+.|+|||+||+|+...+ ....+.+..++..+++..++++
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~------~~~~P~ilvlNK~D~~~~~-~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR------EGKAPVILAVNKVDNVQEK-ADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH------SSSSCEEEEEESTTTCCCH-HHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH------hcCCCEEEEEECcccCccH-HHHHHHHHHHHHhcCcCceEEE
Confidence 6778999999999987 3333345433221 2458999999999986522 2233455556666675579999
Q ss_pred eCCCCcCHHHHHHHHHHHHHh
Q psy4094 608 SAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 608 SAKtGeNVeELFe~IIr~Ile 628 (663)
||++|.|+++++++|.+.+..
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCB
T ss_pred ECCCCCCHHHHHHHHHHhCCc
Confidence 999999999999999887654
No 166
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=2.5e-17 Score=165.81 Aligned_cols=161 Identities=17% Similarity=0.277 Sum_probs=97.8
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC-CCCcc-------ccceeeeceeEEEecCCceeEEEEEEeCCCcc-------c
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF-FSPHY-------RATIGVDFALKVLSWDHETIIRLQLWDIAGQE-------R 520 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~-fsee~-------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE-------r 520 (663)
...++|+|+|.+|+|||||++++++.. +...+ .+|+++++....+..++. .+.+.||||+|+. .
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV-QLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--C-CEEEEEEECCCCSCCSCCTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCe-EEEEEEEECCCccccccchhh
Confidence 356999999999999999999977644 34444 677887877777766664 5789999999973 3
Q ss_pred hhhhH-------HHHHhc-------------CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 521 FGNMT-------RVYYKE-------------AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 521 frsl~-------~~~~r~-------------ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
|..+. ..|+.. +|++|++++.+.......-..|+..+.. ++|+|+|+||+|+
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--------~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--------KVNIIPLIAKADT 156 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--------TSCEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--------cCCEEEEEeccCC
Confidence 55554 556665 7899999977653322222345554441 6899999999998
Q ss_pred CCCC-CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 581 PKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 581 ~der-~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
.... .....+.+.+.+..+++ .+|++||.++.|+++++++|.+.+
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 5422 01112344555556674 789999999999999999988754
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.69 E-value=1.4e-17 Score=180.87 Aligned_cols=151 Identities=16% Similarity=0.139 Sum_probs=109.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC--CCCC-----------------------------ccccceeeeceeEEEecCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ--FFSP-----------------------------HYRATIGVDFALKVLSWDHE 505 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~--~fse-----------------------------e~~~TigiDf~~ktV~vdge 505 (663)
..++|+++|+.++|||||+++|++. .+.. +..++++++.....+...+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~- 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK- 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS-
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC-
Confidence 4689999999999999999999864 2221 1124455555555555443
Q ss_pred eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc---cH----HHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q psy4094 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA---TF----DAVLKWKQDLDAKVTLPDGNPIP-CVLLANK 577 (663)
Q Consensus 506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~---SF----e~L~~wieeL~~~~~~~~~~~IP-IILVGNK 577 (663)
..+.|||||||++|...+..++..+|++|||||++++. +| +... ++..+.. .++| +|||+||
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~-------~~v~~iivviNK 154 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT-------LGVRQLIVAVNK 154 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH-------TTCCEEEEEEEC
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH-------cCCCeEEEEEEc
Confidence 57999999999999999999999999999999999763 33 2322 2222221 2465 9999999
Q ss_pred CCCCCCC---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHH
Q psy4094 578 CDQPKEG---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDA 618 (663)
Q Consensus 578 sDL~der---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeEL 618 (663)
+|+.... .....+++..++..+++ ++|+++||++|.||.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9997321 11234556777777774 58999999999999865
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.69 E-value=8.9e-17 Score=170.59 Aligned_cols=149 Identities=9% Similarity=-0.012 Sum_probs=113.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEE
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVy 539 (663)
+|+++|+.++|||||+++|+ .+.++++.....+...+ ..+.|||||||++|...+..+++.+|++||||
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~---~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVv 91 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG---RNMVFVDAHSYPKTLKSLITALNISDIAVLCI 91 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS---SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC---eEEEEEECCChHHHHHHHHHHHHHCCEEEEEE
Confidence 99999999999999999997 44555566555566554 36999999999999988889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEe-CCCCCCCCC-CCCHHHHHHHHHHcC--CCeEEE--EeCCC-
Q psy4094 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLAN-KCDQPKEGI-ANNPAKIDEFIKEHN--FSGWFE--TSAKD- 611 (663)
Q Consensus 540 DVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVGN-KsDL~der~-~Vs~eei~qlak~~g--~i~ffE--tSAKt- 611 (663)
| ++ ..+.....|+..+.. .++|. |+|+| |+|+ ...+ ....+++++++..++ .+++++ +||++
T Consensus 92 d-~~-g~~~qt~e~~~~~~~-------~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~ 161 (370)
T 2elf_A 92 P-PQ-GLDAHTGECIIALDL-------LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAK 161 (370)
T ss_dssp C-TT-CCCHHHHHHHHHHHH-------TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSS
T ss_pred c-CC-CCcHHHHHHHHHHHH-------cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccC
Confidence 9 54 445555666655553 24777 89999 9999 4320 111245556665544 258999 99999
Q ss_pred --CcCHHHHHHHHHHHHHhh
Q psy4094 612 --NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 612 --GeNVeELFe~IIr~Ile~ 629 (663)
+.||+++|+.|.+.+...
T Consensus 162 ~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 162 NPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp STTTTHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhhcccc
Confidence 999999999999887543
No 169
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.68 E-value=2.9e-17 Score=177.33 Aligned_cols=154 Identities=17% Similarity=0.211 Sum_probs=104.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCC--------ccchhhhHHHH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAG--------QERFGNMTRVY 528 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpG--------QErfrsl~~~~ 528 (663)
..+|+|+|.+|||||||+++|++..+. ....++++.+.....+.+.+ ..++||||+| +++++.++..+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN---YDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS---SCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC---ceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 469999999999999999999987654 22233333344444444444 4799999999 88888999999
Q ss_pred HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 529 YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 529 ~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
+++||++|+|+|..+..... ..|+..+.. ..++|+|||+||+|+.... ..+.++. ..++..++++|
T Consensus 100 ~~~ad~il~VvD~~~~~~~~--d~~l~~~l~------~~~~pvilV~NK~D~~~~~-----~~~~e~~-~lg~~~~~~iS 165 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAA--DEEVAKILY------RTKKPVVLAVNKLDNTEMR-----ANIYDFY-SLGFGEPYPIS 165 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHH--HHHHHHHHT------TCCSCEEEEEECC--------------CCSG-GGSSSSEEECC
T ss_pred HhhCCEEEEEEeCCCCCChH--HHHHHHHHH------HcCCCEEEEEECccchhhh-----hhHHHHH-HcCCCceEEee
Confidence 99999999999987654433 344443332 2568999999999986532 1111222 23444678999
Q ss_pred CCCCcCHHHHHHHHHHHHHh
Q psy4094 609 AKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 609 AKtGeNVeELFe~IIr~Ile 628 (663)
|++|.|+.++|+.+.+.+..
T Consensus 166 A~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGG
T ss_pred cccccchHHHHHHHHhhccc
Confidence 99999999999999887643
No 170
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.68 E-value=2.7e-18 Score=189.56 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=113.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFI 537 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaIL 537 (663)
..+|+|+|+.++|||||+++|.+..+.....++++.+.....+.+++. .+.|||||||+.|..++..++..+|++||
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~---~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG---MITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS---CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE---EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 368999999999999999999986666555666766666666666553 68999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHH---HHHHHHcC-CCeEEEEeCCCCc
Q psy4094 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKI---DEFIKEHN-FSGWFETSAKDNI 613 (663)
Q Consensus 538 VyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei---~qlak~~g-~i~ffEtSAKtGe 613 (663)
|||++++...+....|. .+. ..++|+|||+||+|+.........++. ..++..++ .++|+++||++|.
T Consensus 81 VVda~~g~~~qT~e~l~-~~~-------~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQ-HAK-------AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEETTTBSCTTTHHHHH-HHH-------HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EeecccCccHHHHHHHH-HHH-------hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999864433333332 222 135899999999999753211111000 01112222 2589999999999
Q ss_pred CHHHHHHHHHH
Q psy4094 614 NIDDAAKTLVQ 624 (663)
Q Consensus 614 NVeELFe~IIr 624 (663)
||+++|++|+.
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999999875
No 171
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.67 E-value=1.7e-16 Score=158.16 Aligned_cols=165 Identities=12% Similarity=0.127 Sum_probs=107.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccc--eeeeceeEEEecCCceeEEEEEEeCCCc--------cchhhhHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRAT--IGVDFALKVLSWDHETIIRLQLWDIAGQ--------ERFGNMTR 526 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~T--igiDf~~ktV~vdge~~vkLqIwDTpGQ--------Erfrsl~~ 526 (663)
..++|+|||.+|||||||+++|++..+....... ++.......+.+++ ..+.||||||. +.+.....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK---CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT---EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC---cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 4589999999999999999999998766544333 33334444555554 47999999996 44444444
Q ss_pred HHH----hcCcEEEEEEeCCCcccH-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC-----CCHHHHHHHH
Q psy4094 527 VYY----KEAVGAFIVFDVTRAATF-DAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA-----NNPAKIDEFI 596 (663)
Q Consensus 527 ~~~----r~ADgaILVyDVTd~~SF-e~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~-----Vs~eei~qla 596 (663)
.++ +.+|++|+|+|+++.... ..+..|+..+. . ....+.|+|||+||+|+...... ...+.++.++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~---~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMF---G-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHH---C-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHh---C-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 444 899999999999853211 12223333332 1 11235899999999999764311 0113467777
Q ss_pred HHcCCCeEEEEeCCC-----CcCHHHHHHHHHHHHHhh
Q psy4094 597 KEHNFSGWFETSAKD-----NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 597 k~~g~i~ffEtSAKt-----GeNVeELFe~IIr~Ile~ 629 (663)
..++. .|+.+++.. +.||.+||+.|.+.+.+.
T Consensus 173 ~~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 173 AECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HHTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88775 577666554 589999999998877653
No 172
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.1e-17 Score=186.03 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=107.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCc-------------------------------cccceeeeceeEEEecCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPH-------------------------------YRATIGVDFALKVLSWDHE 505 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee-------------------------------~~~TigiDf~~ktV~vdge 505 (663)
..++|+|+|+++||||||+++|++...... ..++++++.....+...+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~- 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence 458999999999999999999986533211 124556666666666554
Q ss_pred eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc---cHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCC
Q psy4094 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA---TFDAVLKWKQDLDAKVTLPDGNPI-PCVLLANKCDQP 581 (663)
Q Consensus 506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~---SFe~L~~wieeL~~~~~~~~~~~I-PIILVGNKsDL~ 581 (663)
+.++|||||||++|...+..+++.+|++|+|||++++. +|.....+...+.... ..++ ++|||+||+|+.
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~----~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS----SLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH----TTTCCEEEEEEECTTTT
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH----HcCCCeEEEEEeccccc
Confidence 57999999999999999999999999999999999742 1111112222211110 1233 599999999997
Q ss_pred CCC---CCCCHHHHHHHHHHcCC----CeEEEEeCCCCcCHHHH
Q psy4094 582 KEG---IANNPAKIDEFIKEHNF----SGWFETSAKDNINIDDA 618 (663)
Q Consensus 582 der---~~Vs~eei~qlak~~g~----i~ffEtSAKtGeNVeEL 618 (663)
..+ .....+++..++...++ ++||+|||++|.||.++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 632 11123445556665554 58999999999999976
No 173
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.66 E-value=4e-16 Score=175.32 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=108.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCc----cccceeeeceeEEE------------ecCCceeEEEEEEeCCCccch
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPH----YRATIGVDFALKVL------------SWDHETIIRLQLWDIAGQERF 521 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee----~~~TigiDf~~ktV------------~vdge~~vkLqIwDTpGQErf 521 (663)
..+|+|+|+.++|||||+++|++..+... ...+++..+..... .++.. ...++|||||||++|
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~-~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRET-LPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGT-CCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccc-cCCEEEEECCCcHHH
Confidence 46999999999999999999987544322 12233322221100 00000 125899999999999
Q ss_pred hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC------------CH
Q psy4094 522 GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN------------NP 589 (663)
Q Consensus 522 rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V------------s~ 589 (663)
..++..+++.+|++|||||++++-.-+....|. .+.. .++|+|||+||+|+....... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH-------cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 999999999999999999999943333333332 2221 358999999999986432100 00
Q ss_pred ----------HHHHHHHHHcC--------------CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 590 ----------AKIDEFIKEHN--------------FSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 590 ----------eei~qlak~~g--------------~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
.++...+...+ ..+++++||++|.||++|+++|+..+..
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 01112222222 2379999999999999999999987753
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.64 E-value=2.2e-15 Score=170.84 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=84.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCcc------------------ccceeeeceeEEEecCCceeEEEEEEeCCCc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHY------------------RATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~------------------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ 518 (663)
...+|+|+|+.|+|||||+++|++....... ...+++......+... .+.++||||+||
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~---~~~~nliDTpG~ 84 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR---GHRVFLLDAPGY 84 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET---TEEEEEEECCCS
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC---CEEEEEEeCCCc
Confidence 4579999999999999999999853322111 1233333333333333 368999999999
Q ss_pred cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 519 Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
++|...+..+++.+|++|+|+|+++....+... |+..+.. .++|+|+|+||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~-~~~~~~~-------~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVAER-------LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH-------TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHHH-HHHHHHH-------ccCCEEEEecCCchh
Confidence 999999999999999999999999877666553 3333432 358999999999987
No 175
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.63 E-value=4.6e-17 Score=167.33 Aligned_cols=135 Identities=16% Similarity=0.084 Sum_probs=111.5
Q ss_pred HHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHH
Q psy4094 473 SIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAV 550 (663)
Q Consensus 473 SLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L 550 (663)
+|+.+|+.+.|. ..+.+|+|..+ ...+..++ .++|||+ |++|+.++..||+++|++|+|||++++. +|..+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~-~~~~~~~~----~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l 104 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRV-EYTPDETG----SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII 104 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEE-EEECCCSS----SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEE-EEEEcCCC----eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence 688899999998 89999999444 33333332 5899999 9999999999999999999999999997 79999
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCC-CeEEEEeCCCCcCHHHHHHHHHH
Q psy4094 551 LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNF-SGWFETSAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 551 ~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~-i~ffEtSAKtGeNVeELFe~IIr 624 (663)
..|+..+.. .++|+|||+||+||...+ . .+++.+++..++. ..||+|||++|.||+++|..+..
T Consensus 105 ~~~l~~~~~-------~~~piilv~NK~DL~~~~-~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 105 DKFLVLAEK-------NELETVMVINKMDLYDED-D--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHH-------TTCEEEEEECCGGGCCHH-H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHH-------CCCCEEEEEeHHHcCCch-h--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 999988763 369999999999997644 1 2457777777762 37999999999999999988653
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.63 E-value=5.7e-16 Score=184.34 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=112.7
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC-------CC---------CCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ-------FF---------SPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~-------~f---------see~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr 520 (663)
..++|+|+|+.++|||||+++|++. .+ ..+...+++++.....+... ...++|||||||++
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~---~~kI~IIDTPGHed 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP---TRHYAHVDCPGHAD 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS---SCEEEEEECCCHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC---CEEEEEEECCChHH
Confidence 4589999999999999999999863 11 01122333333333333322 35799999999999
Q ss_pred hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCC--CCCCHHHHHHHHH
Q psy4094 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQPKEG--IANNPAKIDEFIK 597 (663)
Q Consensus 521 frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL~der--~~Vs~eei~qlak 597 (663)
|...+..++..+|++|||||++++...+.. .|+..+.. .++| +|||+||+|+.... .....+++..++.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~QTr-EhL~ll~~-------lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLGRQ-------VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCTTHH-HHHHHHHH-------HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcHHHH-HHHHHHHH-------cCCCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 999999999999999999999997655544 34444442 2478 89999999997522 1122356777888
Q ss_pred HcCC----CeEEEEeCCCC--------cCHHHHHHHHHHHHH
Q psy4094 598 EHNF----SGWFETSAKDN--------INIDDAAKTLVQKIL 627 (663)
Q Consensus 598 ~~g~----i~ffEtSAKtG--------eNVeELFe~IIr~Il 627 (663)
.+++ ++|+++||++| .||.++|+.|.+.+.
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 7764 58999999999 468898888877554
No 177
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.63 E-value=3.1e-17 Score=183.92 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=83.6
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC-------------------------------CCCCccccceeeeceeEEEecCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ-------------------------------FFSPHYRATIGVDFALKVLSWDH 504 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~-------------------------------~fsee~~~TigiDf~~ktV~vdg 504 (663)
...++|+|||+.++|||||+++|+.. .+..+..++++++.....+..++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 45689999999999999999999631 12223355666666666665543
Q ss_pred ceeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcc---cH----HHHHHHHHHHHhhcCCCCCCCCc-EEEEEe
Q psy4094 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAA---TF----DAVLKWKQDLDAKVTLPDGNPIP-CVLLAN 576 (663)
Q Consensus 505 e~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~---SF----e~L~~wieeL~~~~~~~~~~~IP-IILVGN 576 (663)
..|.|||||||++|...+..++..+|++|||||++++. .| +.. .++..+.. .++| +|||+|
T Consensus 255 ---~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~-e~l~~~~~-------lgip~iIvviN 323 (592)
T 3mca_A 255 ---KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR-EHAYLLRA-------LGISEIVVSVN 323 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHH-HHHHHHHH-------SSCCCEEEEEE
T ss_pred ---eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHH-HHHHHHHH-------cCCCeEEEEEe
Confidence 57899999999999999889999999999999999753 11 111 12222221 2365 999999
Q ss_pred CCCCCCCC---CCCCHHHHHHHH-HHcCC----CeEEEEeCCCCcCHH
Q psy4094 577 KCDQPKEG---IANNPAKIDEFI-KEHNF----SGWFETSAKDNINID 616 (663)
Q Consensus 577 KsDL~der---~~Vs~eei~qla-k~~g~----i~ffEtSAKtGeNVe 616 (663)
|+|+.... .....+++..++ ..+++ ++||+|||++|.||.
T Consensus 324 KiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 324 KLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 99986522 111233444555 44554 379999999999998
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.62 E-value=6.5e-15 Score=167.83 Aligned_cols=119 Identities=22% Similarity=0.317 Sum_probs=88.5
Q ss_pred CCcceeEEEEEeCCCCCHHHHHHHHHhC--CCC------C----------ccccceeeeceeEEEecCCceeEEEEEEeC
Q psy4094 454 KREFLYKILVIGELGAGKTSIIKRYVHQ--FFS------P----------HYRATIGVDFALKVLSWDHETIIRLQLWDI 515 (663)
Q Consensus 454 ~~d~~~KIVVLGd~GVGKTSLInrLlg~--~fs------e----------e~~~TigiDf~~ktV~vdge~~vkLqIwDT 515 (663)
..+..++|+|+|+.|+|||||+++|+.. .+. . +....+++......+.+.+ +.++||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~---~~i~liDT 84 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD---HRINIIDT 84 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT---EEEEEECC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC---eEEEEEEC
Confidence 3456789999999999999999999831 110 0 0122333334344444443 68999999
Q ss_pred CCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 516 pGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
+||.+|...+..+++.+|++|+|||+++..+++....|..... .++|+|+|+||+|+...
T Consensus 85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--------YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--------TTCCEEEEEECTTSTTC
T ss_pred cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--------cCCCEEEEEECCCcccC
Confidence 9999999999999999999999999999999998887765333 36899999999998653
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.59 E-value=1.9e-14 Score=164.34 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=88.8
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC--CCCC----------------ccccceeeeceeEEEecCC----ceeEEEEEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ--FFSP----------------HYRATIGVDFALKVLSWDH----ETIIRLQLW 513 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~--~fse----------------e~~~TigiDf~~ktV~vdg----e~~vkLqIw 513 (663)
+..++|+|+|+.|+|||||+++|+.. .+.. +....+++......+.+.+ ...+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999742 1111 0122333333333444432 123789999
Q ss_pred eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
||+||.+|...+..+++.+|++|+|||+++...++....|..... .++|+|+|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--------~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--------YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--------cCCCEEEEEeCCCcccc
Confidence 999999999999999999999999999999888777766643322 35899999999998653
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.59 E-value=1.8e-14 Score=159.66 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=81.5
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCC--CC--------------------CccccceeeeceeEEEecCCceeEEEEEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQF--FS--------------------PHYRATIGVDFALKVLSWDHETIIRLQLW 513 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~--fs--------------------ee~~~TigiDf~~ktV~vdge~~vkLqIw 513 (663)
...++|+|+|+.|+|||||+++|+... +. .+...++++......+.+.+ +.++||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~---~~i~li 87 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD---CLVNLL 87 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT---EEEEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC---eEEEEE
Confidence 356899999999999999999998631 10 00112222233333344333 689999
Q ss_pred eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
|||||++|...+..+++.+|++|+|||++++..... ..+...+. ..++|+|+|+||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~---~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTR---LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHT---TTTCCEEEEEECTTSCCS
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHH---HcCCCEEEEEcCcCCccc
Confidence 999999999999999999999999999998754333 22222221 246899999999998653
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.59 E-value=8.9e-16 Score=158.12 Aligned_cols=170 Identities=16% Similarity=0.241 Sum_probs=93.7
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC-CCCCcc--------ccceeeeceeEEEecCCceeEEEEEEeCCCc-------c
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ-FFSPHY--------RATIGVDFALKVLSWDHETIIRLQLWDIAGQ-------E 519 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~-~fsee~--------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQ-------E 519 (663)
...|+|+|||++|||||||++++++. .+...+ ..+++.......+...+. .+.+++||++|+ +
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~-~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV-KLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---C-CEEEEEEEEC----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc-ccCcchhhhhhhhhhcCcHH
Confidence 34589999999999999999998874 444332 123332222223333333 578999999998 6
Q ss_pred chhhhHH-------HHHhcCcEEE-----------EEEeCCC-cccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 520 RFGNMTR-------VYYKEAVGAF-----------IVFDVTR-AATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 520 rfrsl~~-------~~~r~ADgaI-----------LVyDVTd-~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
.|+.+.. .+++...+.+ ++|+... ..+|+.+. +..++.. ...+++++|+||+|+
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~--~~~l~~l-----~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD--VAFMKAI-----HNKVNIVPVIAKADT 167 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH--HHHHHHH-----TTTSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH--HHHHHHH-----HhcCCEEEEEEeCCC
Confidence 7777766 6776554322 4443332 23455443 1233322 135789999999998
Q ss_pred CCCC-CCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhhhhhhhc
Q psy4094 581 PKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635 (663)
Q Consensus 581 ~der-~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile~~k~~~~ 635 (663)
...+ ..+..+++.+++..+++ .||++||++| |++++|.++++.+.........
T Consensus 168 ~~~~e~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~avi 221 (301)
T 2qnr_A 168 LTLKERERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKASIPFSVV 221 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTTCSEECC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcCCCceEE
Confidence 6532 11234678888999985 8999999999 9999999999999876654433
No 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.58 E-value=1.5e-14 Score=144.56 Aligned_cols=122 Identities=12% Similarity=0.077 Sum_probs=88.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHHHHHh-----
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYK----- 530 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~~r----- 530 (663)
..++|+|+|+.|||||||+++|++..+. .......+.......+.+++ ..+.||||||+++|......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG---FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT---EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC---eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4589999999999999999999987753 22233334455555555555 47999999999988766666654
Q ss_pred ----cCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 531 ----EAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 531 ----~ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
++|++|+|+|++... +... ..|+..|...+.. ....|+|+|+||+|+...+
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK--EIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG--GGGGGEEEEEECTTCCCST
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch--hhhcCEEEEEeCcccCCCC
Confidence 789999999998755 4433 4777777765321 1124899999999996443
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=4.1e-14 Score=161.29 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=87.7
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh--CCCCC----------------ccccceeeeceeEEEecCCceeEEEEEEeCCC
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH--QFFSP----------------HYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg--~~fse----------------e~~~TigiDf~~ktV~vdge~~vkLqIwDTpG 517 (663)
+...+|+|+|+.|+|||||+++|+. +.+.. +..+.+++......+.+.+ +.++||||+|
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~---~~i~liDTPG 84 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG---HRVNIIDTPG 84 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT---EEEEEECCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC---eeEEEEECcC
Confidence 4568999999999999999999984 22210 0122333333344455443 6799999999
Q ss_pred ccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 518 QErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
+.+|...+..+++.+|++|+|+|+++..+++....|.. +.. .++|+|+|+||+|+...
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~-------~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT-------YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH-------TTCCEEEEEECTTSTTC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH-------cCCCEEEEEECCCcccc
Confidence 99999999999999999999999999989888877764 332 35899999999998653
No 184
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.56 E-value=1e-16 Score=153.86 Aligned_cols=163 Identities=18% Similarity=0.145 Sum_probs=95.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeece------------eEEEecC-CceeEEEEEEeCCCccchhh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA------------LKVLSWD-HETIIRLQLWDIAGQERFGN 523 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~------------~ktV~vd-ge~~vkLqIwDTpGQErfrs 523 (663)
..++|+|+|+.|||||||+++|+...+...+..+++.++. ...+.++ +. .+.+.+||+ ++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~~~~~ 113 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGK-ECHLDAHLV--GHALED 113 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTT-CSSCCHHHH--HHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCc-eEeccHHHH--HHHHHH
Confidence 3589999999999999999999987766666777777765 3344433 21 122333333 222222
Q ss_pred hHHHHHhcCcEEEEEEeC--CCcccHHHHHHHHHHHHhhcCCCCCC----------CCcEEEEEeCCCCCCCCCCCCHHH
Q psy4094 524 MTRVYYKEAVGAFIVFDV--TRAATFDAVLKWKQDLDAKVTLPDGN----------PIPCVLLANKCDQPKEGIANNPAK 591 (663)
Q Consensus 524 l~~~~~r~ADgaILVyDV--Td~~SFe~L~~wieeL~~~~~~~~~~----------~IPIILVGNKsDL~der~~Vs~ee 591 (663)
+. +..+|.+++-.+. ..+.+|+....|+..+... .... ..|++||+||+|+...+ .+..++
T Consensus 114 l~---~~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~---~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~ 186 (226)
T 2hf9_A 114 LN---LDEIDLLFIENVGNLICPADFDLGTHKRIVVIST---TEGDDTIEKHPGIMKTADLIVINKIDLADAV-GADIKK 186 (226)
T ss_dssp SC---GGGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEG---GGCTTTTTTCHHHHTTCSEEEEECGGGHHHH-TCCHHH
T ss_pred Hh---cCCCCEEEEeCCCCccCcchhhhccCcEEEEEec---CcchhhHhhhhhHhhcCCEEEEeccccCchh-HHHHHH
Confidence 21 1122333221110 1111222111221111100 0001 25669999999986532 345677
Q ss_pred HHHHHHHcC-CCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 592 IDEFIKEHN-FSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 592 i~qlak~~g-~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
+.+++..++ ..+++++||++|.|++++|++|.+.+..+
T Consensus 187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 777777653 35899999999999999999999887653
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.55 E-value=4.3e-15 Score=155.27 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=108.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCcccccee----------------------------------------------
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG---------------------------------------------- 492 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Tig---------------------------------------------- 492 (663)
..|+|||+.|||||||+++|++..+.+....+++
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 4999999999999999999999776432222111
Q ss_pred ------eeceeEEEecCCceeEEEEEEeCCCccch-------------hhhHHHHHhcCcEEEEEEeCCCcccHHHHHHH
Q psy4094 493 ------VDFALKVLSWDHETIIRLQLWDIAGQERF-------------GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW 553 (663)
Q Consensus 493 ------iDf~~ktV~vdge~~vkLqIwDTpGQErf-------------rsl~~~~~r~ADgaILVyDVTd~~SFe~L~~w 553 (663)
+......+.+.+.....+.||||||..++ ..+...|++++|++|+|+|..+..... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 00000111111111235899999998876 678888999999999999887644332 344
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 554 KQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 554 ieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
+..+... ...+.|+|+|+||+|+.... ....+.+..+...++ .+|+++++..+.++++.+..+.....+
T Consensus 193 ~~l~~~~----~~~~~~~i~V~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~~~~~~e 261 (360)
T 3t34_A 193 IKISREV----DPSGDRTFGVLTKIDLMDKG-TDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMIAARKRE 261 (360)
T ss_dssp HHHHHHS----CTTCTTEEEEEECGGGCCTT-CCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHh----cccCCCEEEEEeCCccCCCc-ccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHHHHHHHH
Confidence 4444432 23468999999999997654 334444444444445 479999999999999887776555443
No 186
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.55 E-value=6.4e-15 Score=140.89 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=99.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeece------------eEEEecCC-----------------ceeE
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA------------LKVLSWDH-----------------ETII 508 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~------------~ktV~vdg-----------------e~~v 508 (663)
..+|+|+|..|||||||+++|+...........+..++. ...+.++. ...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 479999999999999999999875322211222222221 11122211 0124
Q ss_pred EEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy4094 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN 588 (663)
Q Consensus 509 kLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs 588 (663)
.+.||||+|+..... .+...++++|+|+|+++... ....+...+ +.|+++|+||+|+...+ ...
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~----------~~~~iiv~NK~Dl~~~~-~~~ 173 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF----------RVADLIVINKVALAEAV-GAD 173 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH----------HTCSEEEEECGGGHHHH-TCC
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh----------hcCCEEEEecccCCcch-hhH
Confidence 688999999621111 11135789999999987642 121222221 27889999999986432 235
Q ss_pred HHHHHHHHHHcC-CCeEEEEeCCCCcCHHHHHHHHHHHHHhhh
Q psy4094 589 PAKIDEFIKEHN-FSGWFETSAKDNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 589 ~eei~qlak~~g-~i~ffEtSAKtGeNVeELFe~IIr~Ile~~ 630 (663)
.+++.+++..++ ..+++++||++|.|++++|++|.+.+....
T Consensus 174 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 174 VEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 666777776654 358999999999999999999999886543
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.52 E-value=2.1e-14 Score=145.27 Aligned_cols=113 Identities=13% Similarity=0.209 Sum_probs=72.9
Q ss_pred EEEEEEeCCCccc-------------hhhhHHHHHhcCcEEEEEEeCCCcccH-HHHHHHHHHHHhhcCCCCCCCCcEEE
Q psy4094 508 IRLQLWDIAGQER-------------FGNMTRVYYKEAVGAFIVFDVTRAATF-DAVLKWKQDLDAKVTLPDGNPIPCVL 573 (663)
Q Consensus 508 vkLqIwDTpGQEr-------------frsl~~~~~r~ADgaILVyDVTd~~SF-e~L~~wieeL~~~~~~~~~~~IPIIL 573 (663)
..+.||||||..+ +...+..++..+|++|+|||.++.... .....++..+. ..+.|+|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~-------~~~~~~i~ 203 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-------PEGKRTIG 203 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-------SSCSSEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC-------CCCCcEEE
Confidence 4699999999753 567778899999999999998543311 11112333232 24689999
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC------CcCHHHHHHHHHHHHHhh
Q psy4094 574 LANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD------NINIDDAAKTLVQKILEN 629 (663)
Q Consensus 574 VGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt------GeNVeELFe~IIr~Ile~ 629 (663)
|+||+|+.... ....+.+......++ ..|+++++.. +.|+.+++..+.+.+...
T Consensus 204 v~NK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 204 VITKLDLMDKG-TDAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp EEECTTSSCSS-CCCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred EEcCcccCCcc-hHHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 99999997644 222332221111111 3577777654 688999999988877653
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.52 E-value=3.6e-14 Score=153.44 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=114.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc----hhhhHHHH---Hhc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER----FGNMTRVY---YKE 531 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr----frsl~~~~---~r~ 531 (663)
..|+|||.+|||||||++++.+........+..+.....-.+.+++. ..+.+||++|... +..+...+ +..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 36899999999999999999876432111111122222334555542 4689999999743 22233333 456
Q ss_pred CcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 532 AVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 532 ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
++.+|+|+|++ ...+..+..|..++..+.. .....|.|||+||+|+... ...+.+.+++...++ .+|.+||++
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~--aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~-~vi~iSA~~ 308 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEE---EAVKALADALAREGL-AVLPVSALT 308 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTS-CEEECCTTT
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH--HhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCC-eEEEEECCC
Confidence 99999999998 7788888888888776521 1124789999999998653 223444555555564 799999999
Q ss_pred CcCHHHHHHHHHHHHHhhhh
Q psy4094 612 NINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 612 GeNVeELFe~IIr~Ile~~k 631 (663)
++||+++|++|++.+.....
T Consensus 309 g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 309 GAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CTTHHHHHHHHHHHHHTSCC
T ss_pred ccCHHHHHHHHHHHHHhccc
Confidence 99999999999999876554
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.51 E-value=1.5e-13 Score=153.06 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=92.3
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh----------------------CCCCCccccceeeeceeEEEecCCceeEEEEEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH----------------------QFFSPHYRATIGVDFALKVLSWDHETIIRLQLW 513 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg----------------------~~fsee~~~TigiDf~~ktV~vdge~~vkLqIw 513 (663)
.+..+|+|||+.++|||||+.+++. +....+..+.+++......+.+.+ +.|+|+
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlI 105 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---RVVNLL 105 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT---EEEEEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC---EEEEEE
Confidence 3567999999999999999999961 112245667777777777777765 589999
Q ss_pred eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q psy4094 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG 584 (663)
Q Consensus 514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der 584 (663)
|||||.+|.....+.++-+|++|+|+|+..+-.-+....|..... .++|+|++.||+|.....
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--------~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--------RATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCCEEEEEECTTSCCCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--------hCCceEEEEecccchhcc
Confidence 999999999999999999999999999999999999888866555 469999999999986544
No 190
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.48 E-value=2.6e-13 Score=135.99 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=81.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccceeeeceeEEEecCCceeEEEEEEeCCCccchhhhHH-------HH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTR-------VY 528 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrsl~~-------~~ 528 (663)
..++|+|+|..|||||||+++|++..+.. ......+.+.....+... .+.+.||||||+.++..+.. .|
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA---GFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET---TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC---CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35899999999999999999999877532 222222222222333333 36799999999987653322 12
Q ss_pred --HhcCcEEEEEEeCCCcccHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q psy4094 529 --YKEAVGAFIVFDVTRAATFDAV-LKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKE 583 (663)
Q Consensus 529 --~r~ADgaILVyDVTd~~SFe~L-~~wieeL~~~~~~~~~~~IPIILVGNKsDL~de 583 (663)
++.+|++|+|||++.. ++... ..|+..+...+.. ....|+|+|+||+|+...
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~--~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK--GIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECCSCCCG
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCc--ccccCEEEEEECcccCCc
Confidence 2479999999999764 34433 4787777654321 112699999999998653
No 191
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.48 E-value=1.7e-13 Score=156.28 Aligned_cols=166 Identities=14% Similarity=0.266 Sum_probs=110.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCC-ccccce--------------eeec--------------------------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSP-HYRATI--------------GVDF-------------------------- 495 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fse-e~~~Ti--------------giDf-------------------------- 495 (663)
..++|+|+|..|+|||||+|+|++..+.. ...++. +.++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35899999999999999999999876543 222222 1110
Q ss_pred -------------eeEEEecCCce-eEEEEEEeCCCccc---hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHH
Q psy4094 496 -------------ALKVLSWDHET-IIRLQLWDIAGQER---FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD 558 (663)
Q Consensus 496 -------------~~ktV~vdge~-~vkLqIwDTpGQEr---frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~ 558 (663)
....+.++... ...+.||||||... +...+..++++||++|+|+|+++..++..+..|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00001111000 02489999999765 34567788999999999999999888888777765443
Q ss_pred hhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHH----------HHHHH----HH-HcC-------CCeEEEEeCC------
Q psy4094 559 AKVTLPDGNPIPCVLLANKCDQPKEGIANNPA----------KIDEF----IK-EHN-------FSGWFETSAK------ 610 (663)
Q Consensus 559 ~~~~~~~~~~IPIILVGNKsDL~der~~Vs~e----------ei~ql----ak-~~g-------~i~ffEtSAK------ 610 (663)
. .+.|+|+|+||+|+.... .+..+ .+... +. ..+ ...+|+|||+
T Consensus 228 ~-------~~~~iiiVlNK~Dl~~~~-~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 228 G-------RGLTVFFLVNAWDQVRES-LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp T-------SCCCEEEEEECGGGGGGG-CSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred h-------hCCCEEEEEECccccccc-ccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 1 357899999999986432 11111 12111 11 111 1368999999
Q ss_pred --------CCcCHHHHHHHHHHHHHhhh
Q psy4094 611 --------DNINIDDAAKTLVQKILEND 630 (663)
Q Consensus 611 --------tGeNVeELFe~IIr~Ile~~ 630 (663)
++.|+++++.+|.+.+...+
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999998776544
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=157.04 Aligned_cols=160 Identities=17% Similarity=0.266 Sum_probs=85.9
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhCCCC-Ccc-------ccceeeeceeEEEecCCceeEEEEEEeCCCccchh-----
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQFFS-PHY-------RATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG----- 522 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~-------~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr----- 522 (663)
...|+|+|||++|||||||+++|++..+. ..+ ..+++.++....+...+. ...+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~-~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV-QLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-------CEEEEEEECC-----------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCc-ccceeeeechhhhhhccchhh
Confidence 34589999999999999999999987663 111 223332222222222222 3579999999986541
Q ss_pred --hhH------------------HHHHhcCcEEEEEEeCCCc-ccHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q psy4094 523 --NMT------------------RVYYKEAVGAFIVFDVTRA-ATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCDQ 580 (663)
Q Consensus 523 --sl~------------------~~~~r~ADgaILVyDVTd~-~SFe~L~-~wieeL~~~~~~~~~~~IPIILVGNKsDL 580 (663)
.+. ..+++++++.+++|++... .+|+.+. .|+..|. .++++|+|+||+|+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~--------~~v~iIlVinK~Dl 179 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH--------EKVNIIPLIAKADT 179 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT--------TTSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh--------ccCcEEEEEEcccC
Confidence 111 1123456666677766653 4566554 5776664 25899999999998
Q ss_pred CCCCCCCCH--HHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 581 PKEGIANNP--AKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 581 ~der~~Vs~--eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
...+ .+.. +.+.+++..+++ .+|++||+++.|++++|..+...+
T Consensus 180 l~~~-ev~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 180 LTPE-ECQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp SCHH-HHHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred ccHH-HHHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 6533 2222 567778888885 799999999999999888887654
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.47 E-value=1.4e-14 Score=151.30 Aligned_cols=159 Identities=20% Similarity=0.265 Sum_probs=96.9
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCcc------ccce----------------------------------------
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHY------RATI---------------------------------------- 491 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~------~~Ti---------------------------------------- 491 (663)
..+|+|+|.++||||||+++|++..+.+.. .++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 469999999999999999999998774211 1221
Q ss_pred ---eeeceeEEEecCCceeEEEEEEeCCCcc-------------chhhhHHHHHhcCcEEEEEE-eCCCcccHHHHHHHH
Q psy4094 492 ---GVDFALKVLSWDHETIIRLQLWDIAGQE-------------RFGNMTRVYYKEAVGAFIVF-DVTRAATFDAVLKWK 554 (663)
Q Consensus 492 ---giDf~~ktV~vdge~~vkLqIwDTpGQE-------------rfrsl~~~~~r~ADgaILVy-DVTd~~SFe~L~~wi 554 (663)
|+......+.+.+.....|.||||||.. .++.+...|+++++.+||++ |.+....-.....|+
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 0000011111111112469999999953 45667888888877666654 554322212222233
Q ss_pred HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH--HHHcCCCeEEEEeCCCCcCHHHHHHHHHH
Q psy4094 555 QDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF--IKEHNFSGWFETSAKDNINIDDAAKTLVQ 624 (663)
Q Consensus 555 eeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql--ak~~g~i~ffEtSAKtGeNVeELFe~IIr 624 (663)
..+. ..+.|+|+|+||+|+.... ....+.+... ...+++..++++||+++.|++++|+++.+
T Consensus 191 ~~~~-------~~~~~~i~V~NK~Dl~~~~-~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KEVD-------PQGQRTIGVITKLDLMDEG-TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHC-------TTCTTEEEEEECGGGSCTT-CCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHhC-------cCCCceEEEeccccccCcc-hhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 3332 2468999999999997644 1122221110 00123345788999999999999999876
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.46 E-value=1.5e-13 Score=159.76 Aligned_cols=118 Identities=20% Similarity=0.265 Sum_probs=88.4
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHhC------------CCC----CccccceeeeceeEEEec--------------CCc
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVHQ------------FFS----PHYRATIGVDFALKVLSW--------------DHE 505 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg~------------~fs----ee~~~TigiDf~~ktV~v--------------dge 505 (663)
+..+||+|||+.|+|||||+++|+.. .+. .++.+.+++......+.+ ++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45689999999999999999999863 111 112333333222222222 222
Q ss_pred eeEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 506 ~~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
.+.++||||+||.+|...+..+++.+|++|+|||++++.+++....|...+. .++|+|||+||+|+..
T Consensus 97 -~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 -SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRAL 164 (842)
T ss_dssp -EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHHH
T ss_pred -CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCeEEEEECCCcch
Confidence 5789999999999999999999999999999999999999999887765443 3589999999999863
No 195
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.42 E-value=2.1e-13 Score=146.27 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=48.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccc------cceeeeceeEE---------------EecCCceeEEEEEEeCCC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYR------ATIGVDFALKV---------------LSWDHETIIRLQLWDIAG 517 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~------~TigiDf~~kt---------------V~vdge~~vkLqIwDTpG 517 (663)
++|+|+|.+|||||||+++|.+........ ++.|+.+.... ..+++...+.++||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876322222 23332211100 012222246899999999
Q ss_pred ccc----hhhhHHH---HHhcCcEEEEEEeCCCc
Q psy4094 518 QER----FGNMTRV---YYKEAVGAFIVFDVTRA 544 (663)
Q Consensus 518 QEr----frsl~~~---~~r~ADgaILVyDVTd~ 544 (663)
+.. ++.+... ++++||++|+|||+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 864 3334443 36899999999999986
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.39 E-value=2.9e-12 Score=146.23 Aligned_cols=119 Identities=20% Similarity=0.267 Sum_probs=90.1
Q ss_pred cceeEEEEEeCCCCCHHHHHHHHHh------------------CCCCCccccceeeeceeEEEecCCc----eeEEEEEE
Q psy4094 456 EFLYKILVIGELGAGKTSIIKRYVH------------------QFFSPHYRATIGVDFALKVLSWDHE----TIIRLQLW 513 (663)
Q Consensus 456 d~~~KIVVLGd~GVGKTSLInrLlg------------------~~fsee~~~TigiDf~~ktV~vdge----~~vkLqIw 513 (663)
+...+|+|||+.++|||||+.+|+. +....+..+.+++......+.+.+. ..+.|+|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 5678999999999999999999971 1112345566666666666665431 14789999
Q ss_pred eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
|||||.+|.......++-+|++|+|+|+..+-..+...-|...+.. ++|+|+|.||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--------~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--------GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--------TCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--------CCCeEEEEccccccC
Confidence 9999999999999999999999999999999988888888877663 599999999999754
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.37 E-value=1.6e-13 Score=155.01 Aligned_cols=161 Identities=18% Similarity=0.270 Sum_probs=118.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh--CC----------------CCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH--QF----------------FSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg--~~----------------fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
..||+|||+.++|||||+.+++. +. ...+..+.+++......+.+.+ +.|+|+|||||.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlIDTPGH~ 78 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN---TKVNIIDTPGHM 78 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS---CBCCCEECCCSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC---EEEEEEECCCcH
Confidence 35899999999999999999972 11 1123344566665556666655 479999999999
Q ss_pred chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-----
Q psy4094 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE----- 594 (663)
Q Consensus 520 rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q----- 594 (663)
+|.......++-+|++|+|+|+..+-.-+....|..... .++|+|++.||+|..........+++++
T Consensus 79 DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--------~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~ 150 (638)
T 3j25_A 79 DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--------MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAE 150 (638)
T ss_dssp STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--------HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--------cCCCeEEEEeccccccCCHHHHHHHHHHHhCCC
Confidence 999999999999999999999999888788777776655 3489999999999754331111111100
Q ss_pred -------------------------------------------------------HHHHcCCCeEEEEeCCCCcCHHHHH
Q psy4094 595 -------------------------------------------------------FIKEHNFSGWFETSAKDNINIDDAA 619 (663)
Q Consensus 595 -------------------------------------------------------lak~~g~i~ffEtSAKtGeNVeELF 619 (663)
......+.+++..||+++.||+.|+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LL 230 (638)
T 3j25_A 151 IVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLI 230 (638)
T ss_dssp CCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHH
T ss_pred ccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHh
Confidence 0111223567889999999999999
Q ss_pred HHHHHHHHhh
Q psy4094 620 KTLVQKILEN 629 (663)
Q Consensus 620 e~IIr~Ile~ 629 (663)
+.|++.+..-
T Consensus 231 d~i~~~~p~p 240 (638)
T 3j25_A 231 EVITNKFYSS 240 (638)
T ss_dssp HHHHHSCCCS
T ss_pred hhhhccccCc
Confidence 9998876543
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=2.3e-11 Score=129.72 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=96.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccchh--
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQERFG-- 522 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQErfr-- 522 (663)
++|+|||.+|||||||+++|.+..+.....+..+++.....+.+++.. ...++||||+|+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 699999999999999999999876543333322223323344454420 1469999999998753
Q ss_pred --hh---HHHHHhcCcEEEEEEeCCCc----------ccHHHHHHHHHHHH-----------------------------
Q psy4094 523 --NM---TRVYYKEAVGAFIVFDVTRA----------ATFDAVLKWKQDLD----------------------------- 558 (663)
Q Consensus 523 --sl---~~~~~r~ADgaILVyDVTd~----------~SFe~L~~wieeL~----------------------------- 558 (663)
.+ .-.+++++|++|+|+|+++. +.++.+..|..+|.
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 22 23458999999999999862 34554443333331
Q ss_pred -------hhcC--------------------CCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCC
Q psy4094 559 -------AKVT--------------------LPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611 (663)
Q Consensus 559 -------~~~~--------------------~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKt 611 (663)
.++. ..-....|+|+|+|+.|..... ....+.++.++...+. .++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~-n~~~~~v~~~~~~~~~-~~i~~sA~~ 240 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFEN-NPYLDRVREIAAKEGA-VVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSS-CHHHHHHHHHHHHTTC-EEEEECHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccc-cHHHHHHHHHHHHcCC-CEEEechHH
Confidence 0010 0012358999999999965322 2345677888888885 799999764
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.29 E-value=2.9e-12 Score=134.36 Aligned_cols=106 Identities=9% Similarity=0.030 Sum_probs=70.7
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IA 586 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~ 586 (663)
+.+.||||+|... .....+..+|++|+|+|......++.+.. ....+|+|||+||+|+.... ..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------------~~~~~p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------------GVLELADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------------TSGGGCSEEEEECCCGGGHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------------hHhhcCCEEEEECCCCcChhHHH
Confidence 5689999999432 23345689999999999887654433221 11236889999999985421 00
Q ss_pred CCHHHHHHHHHHcC------CCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 587 NNPAKIDEFIKEHN------FSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 587 Vs~eei~qlak~~g------~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
...+++...+...+ ..++++|||++|.||++++++|.+.+..
T Consensus 237 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 237 LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 01112222222221 2579999999999999999999988755
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.28 E-value=3.2e-12 Score=125.50 Aligned_cols=113 Identities=12% Similarity=-0.097 Sum_probs=69.7
Q ss_pred EEEEEEeCCCccchhhhHH------HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTR------VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~------~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.||||+|+..+..+.. .++.. +++|+++|..................... ...++|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID---LRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH---HHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh---cccCCCeEEEEeccccc
Confidence 4689999999987643322 23455 78888888765444333222111111000 01248999999999986
Q ss_pred CCCCCCCHHHHHHH----------------------------HHHcCC-CeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 582 KEGIANNPAKIDEF----------------------------IKEHNF-SGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 582 der~~Vs~eei~ql----------------------------ak~~g~-i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
... ..+++.++ +..++. .+++++||++|.|++++|++|.+.+.
T Consensus 185 ~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 185 SEE---EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CHH---HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccc---cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 532 01111111 233333 37899999999999999999988764
No 201
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.25 E-value=2.8e-11 Score=134.80 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=83.2
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCC---Cccccce----eeeceeE-------------------------------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFS---PHYRATI----GVDFALK------------------------------- 498 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fs---ee~~~Ti----giDf~~k------------------------------- 498 (663)
...+|+|+|..|||||||+|+|++..+. ....++. ++.+...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999998763 2222221 1111000
Q ss_pred -EEecCCceeEEEEEEeCCCccc-----------hhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCC
Q psy4094 499 -VLSWDHETIIRLQLWDIAGQER-----------FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566 (663)
Q Consensus 499 -tV~vdge~~vkLqIwDTpGQEr-----------frsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~ 566 (663)
.+.+.+.....+.||||+|+.. |...+..++..+|++|+|||+++.........|+..+..
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------- 216 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG------- 216 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-------
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-------
Confidence 0000100002589999999875 667788899999999999999986666666777766652
Q ss_pred CCCcEEEEEeCCCCCC
Q psy4094 567 NPIPCVLLANKCDQPK 582 (663)
Q Consensus 567 ~~IPIILVGNKsDL~d 582 (663)
.+.|+|||+||+|+..
T Consensus 217 ~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVE 232 (550)
T ss_dssp CGGGEEEEEECGGGSC
T ss_pred cCCCEEEEEECCCccC
Confidence 3479999999999865
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.24 E-value=2e-11 Score=130.01 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=96.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCC------ccccceeeeceeEEEecCC------------------ceeEEEEEEe
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSP------HYRATIGVDFALKVLSWDH------------------ETIIRLQLWD 514 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fse------e~~~TigiDf~~ktV~vdg------------------e~~vkLqIwD 514 (663)
++|+|+|.+|||||||++++.+..... ...+++|. +.+.+ .....++|||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~------~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV------VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE------EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee------EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 589999999999999999998753211 12333332 22221 1135799999
Q ss_pred CCCccchh----hh---HHHHHhcCcEEEEEEeCCCc----------ccHHHHHHHHHHH--------------------
Q psy4094 515 IAGQERFG----NM---TRVYYKEAVGAFIVFDVTRA----------ATFDAVLKWKQDL-------------------- 557 (663)
Q Consensus 515 TpGQErfr----sl---~~~~~r~ADgaILVyDVTd~----------~SFe~L~~wieeL-------------------- 557 (663)
|||+.++. .+ ...+++.||++|+|+|+++. +.+..+..+..+|
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~ 155 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEAR 155 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhc
Confidence 99987642 23 23357999999999999862 2233222211111
Q ss_pred ---------------HhhcCC--------------------CCCCCCcEEEEEeCCCCC--CCCCCCCHHHHHHHHHHcC
Q psy4094 558 ---------------DAKVTL--------------------PDGNPIPCVLLANKCDQP--KEGIANNPAKIDEFIKEHN 600 (663)
Q Consensus 558 ---------------~~~~~~--------------------~~~~~IPIILVGNKsDL~--der~~Vs~eei~qlak~~g 600 (663)
..++.. ......|+|+|+||.|.. +.......+.++.++...+
T Consensus 156 ~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g 235 (368)
T 2dby_A 156 ADRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG 235 (368)
T ss_dssp HCGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcC
Confidence 011100 012247999999999842 2200234677888888888
Q ss_pred CCeEEEEeCCCCcCHHHHHHH
Q psy4094 601 FSGWFETSAKDNINIDDAAKT 621 (663)
Q Consensus 601 ~i~ffEtSAKtGeNVeELFe~ 621 (663)
. .++++||+...++.++++.
T Consensus 236 ~-~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 236 A-EVVVVSARLEAELAELSGE 255 (368)
T ss_dssp C-EEEEECHHHHHHHHTSCHH
T ss_pred C-eEEEeechhHHHHHHhchH
Confidence 4 8999999987666655543
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.20 E-value=1.1e-11 Score=129.44 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=66.6
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-CC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEG-IA 586 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der-~~ 586 (663)
+.+.||||+|...+.. .....+|++|+|+|.+....++.+..+ . .++|+|+|+||+|+.... ..
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~---------~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L---------MEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H---------HHHCSEEEECCCCTTCHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h---------hcccCEEEEECCCCCChHHHH
Confidence 4689999999765432 356899999999999765432211110 0 126789999999986521 00
Q ss_pred CCHHHHHHHHHHcC------CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 587 NNPAKIDEFIKEHN------FSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 587 Vs~eei~qlak~~g------~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
...+++...+..++ ..+++++||++|.|+++++++|.+.+.
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00112333223332 347899999999999999999998775
No 204
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.09 E-value=6.6e-11 Score=121.89 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=80.0
Q ss_pred ccchhhhHHHHHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC-HHHHHHH
Q psy4094 518 QERFGNMTRVYYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN-PAKIDEF 595 (663)
Q Consensus 518 QErfrsl~~~~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs-~eei~ql 595 (663)
++++..+...+++++|++|+|||++++. +++.+..|+..+.. .++|+|||+||+||.+.+ .+. .+++.++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~~-~v~~~~~~~~~ 137 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNEE-EKKELERWISI 137 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHH-HHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCcc-ccHHHHHHHHH
Confidence 7888888889999999999999999986 89999999987763 469999999999996532 111 3455666
Q ss_pred HHHcCCCeEEEEeCCCCcCHHHHHHHH
Q psy4094 596 IKEHNFSGWFETSAKDNINIDDAAKTL 622 (663)
Q Consensus 596 ak~~g~i~ffEtSAKtGeNVeELFe~I 622 (663)
+...++ .+|++||++|.|++++|..+
T Consensus 138 ~~~~g~-~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 138 YRDAGY-DVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp HHHTTC-EEEECCTTTCTTHHHHHHHT
T ss_pred HHHCCC-eEEEEECCCCCCHHHHHhhc
Confidence 667775 89999999999999999874
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.09 E-value=8e-11 Score=123.70 Aligned_cols=103 Identities=8% Similarity=-0.005 Sum_probs=62.1
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN 587 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V 587 (663)
+.+.||||+|.... ...+...+|++++|+|++++...+.+.. .+ ...|.|+|+||+|+.... .
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---------l~~~~ivVlNK~Dl~~~~--~ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---------IEMADLVAVTKSDGDLIV--P 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHH--H
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---------HhcCCEEEEeeecCCCch--h
Confidence 46899999995321 2445788999999999987543322211 11 135789999999985311 0
Q ss_pred CHHHHHHHHHH---------cCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 588 NPAKIDEFIKE---------HNFSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 588 s~eei~qlak~---------~g~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
.......+... ....+++.+||++|.|+++++++|.+.+.
T Consensus 230 ~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 230 ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 00112222211 11246899999999999999999988763
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.99 E-value=5.3e-10 Score=129.20 Aligned_cols=159 Identities=21% Similarity=0.279 Sum_probs=98.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccce---------------------------------------------
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATI--------------------------------------------- 491 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Ti--------------------------------------------- 491 (663)
...+|+|+|..++|||||++++++..+.+......
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 34599999999999999999999976621110000
Q ss_pred ----eee--ceeEEEecCCceeEEEEEEeCCCccc-------------hhhhHHHHH-hcCcEEEEEEeCCCcccHHHHH
Q psy4094 492 ----GVD--FALKVLSWDHETIIRLQLWDIAGQER-------------FGNMTRVYY-KEAVGAFIVFDVTRAATFDAVL 551 (663)
Q Consensus 492 ----giD--f~~ktV~vdge~~vkLqIwDTpGQEr-------------frsl~~~~~-r~ADgaILVyDVTd~~SFe~L~ 551 (663)
++. .....+...+. ..+.|+||||-.. +..+...|+ ..+|++|+|+|+++...-....
T Consensus 130 g~~~~is~~~i~l~I~~P~~--~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHV--LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTC--CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred CCCCcccccceEEEEecCCC--CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000 00111111111 3478999999432 344555566 4789999999998754433333
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HH-HHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 552 KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-FI-KEHNFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 552 ~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-la-k~~g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
.++..+. ..+.|+|+|+||+|+.... ......... +. ..+++..++.+||++|.|+++|++.|.+.
T Consensus 208 ~ll~~L~-------~~g~pvIlVlNKiDlv~~~-~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVD-------PQGQRTIGVITKLDLMDEG-TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHC-------TTCSSEEEEEECTTSSCTT-CCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHH-------hcCCCEEEEEeCcccCCcc-hhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 3444443 2468999999999987543 222211110 00 01233467889999999999999998873
No 207
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.97 E-value=8e-10 Score=110.95 Aligned_cols=112 Identities=7% Similarity=-0.073 Sum_probs=73.3
Q ss_pred eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeCC-CCCCCCCCCCHHH
Q psy4094 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD-GNPIPCVLLANKC-DQPKEGIANNPAK 591 (663)
Q Consensus 514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~-~~~IPIILVGNKs-DL~der~~Vs~ee 591 (663)
|.+||..++.+|..||.++|++|||+|.+|+..++ ...-+.+|...+.... ..++|++|++||. |+.. .+...+
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~E 183 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFY 183 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHH
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHH
Confidence 34589999999999999999999999999986554 2222223333222221 2679999999995 7754 356666
Q ss_pred HHHHHHHc---CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 592 IDEFIKEH---NFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 592 i~qlak~~---g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
+.+.+... ....++.|||.+|+|+.+-++||++.+..+
T Consensus 184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 65554332 224578999999999999999999877543
No 208
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.85 E-value=3.1e-08 Score=106.03 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=100.8
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccch----hhh---HHHHH
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERF----GNM---TRVYY 529 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErf----rsl---~~~~~ 529 (663)
...+|+|||.++||||||+|++.+........+..+.+...-.+.+.+ ..++|+||||-..- ..+ .-..+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~---~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG---AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT---EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC---cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 347999999999999999999998765555556666677677777776 47899999995321 112 22346
Q ss_pred hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-------CCCCCCHHHHHHHHHHcCCC
Q psy4094 530 KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK-------EGIANNPAKIDEFIKEHNFS 602 (663)
Q Consensus 530 r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d-------er~~Vs~eei~qlak~~g~i 602 (663)
++||++++|+|+.++. .....+..+|..+- ......|.+++.||.|... .......++++.+...+.+
T Consensus 148 ~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l- 222 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPL--HHKQIIEKELEGVG--IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI- 222 (376)
T ss_dssp HHCSEEEEEEETTSHH--HHHHHHHHHHHHTT--EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC-
T ss_pred HhcCccccccccCccH--HHHHHHHHHHHHhh--HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc-
Confidence 8899999999999763 23333334444321 1123467889999999632 1124566777777777654
Q ss_pred eEEEEeCCCCcCHHHHHH
Q psy4094 603 GWFETSAKDNINIDDAAK 620 (663)
Q Consensus 603 ~ffEtSAKtGeNVeELFe 620 (663)
.--++-...+...+++.+
T Consensus 223 t~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 223 NSAEIAFRCDATVDDLID 240 (376)
T ss_dssp CSEEEEECSCCCHHHHHH
T ss_pred cCCCeeecccCCHHHHHH
Confidence 122222234445566544
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.83 E-value=3.8e-09 Score=110.62 Aligned_cols=104 Identities=10% Similarity=0.010 Sum_probs=62.8
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN 587 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V 587 (663)
+.+.|+||+|...-. ......+|.+++|+|.......+.+..++ . .++.++|.||+|+.... ..
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~---------~~~~ivvlNK~Dl~~~~-~~ 211 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F---------ELADMIAVNKADDGDGE-RR 211 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H---------HHCSEEEEECCSTTCCH-HH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h---------ccccEEEEEchhccCch-hH
Confidence 468999999964321 23457899999999987543222111111 1 13457778999974321 11
Q ss_pred CHHHHHHHHHHc---C------CCeEEEEeCCCCcCHHHHHHHHHHHHH
Q psy4094 588 NPAKIDEFIKEH---N------FSGWFETSAKDNINIDDAAKTLVQKIL 627 (663)
Q Consensus 588 s~eei~qlak~~---g------~i~ffEtSAKtGeNVeELFe~IIr~Il 627 (663)
.....+.+.... . ..+++.+||+++.|+++|++.|.+.+.
T Consensus 212 s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 212 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111222332211 1 246899999999999999999988654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.79 E-value=5.4e-09 Score=112.69 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=54.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccchh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQERFG 522 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQErfr 522 (663)
..++|+|||.+|||||||++++.+..+.....++.+++.....+.+.+.. ...++|||++|+.++.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 34799999999999999999999887655555666666666666665420 1359999999987654
Q ss_pred h-------hHHHHHhcCcEEEEEEeCCCcccH
Q psy4094 523 N-------MTRVYYKEAVGAFIVFDVTRAATF 547 (663)
Q Consensus 523 s-------l~~~~~r~ADgaILVyDVTd~~SF 547 (663)
. .+..+++++|++|+|+|+++..++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 3 456788999999999999875543
No 211
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.75 E-value=6e-09 Score=108.88 Aligned_cols=112 Identities=7% Similarity=-0.046 Sum_probs=76.1
Q ss_pred eCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCC-CCCCCcEEEEEeC-CCCCCCCCCCCHHH
Q psy4094 514 DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLP-DGNPIPCVLLANK-CDQPKEGIANNPAK 591 (663)
Q Consensus 514 DTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~-~~~~IPIILVGNK-sDL~der~~Vs~ee 591 (663)
|.+||...+.+|..||.++|++|+|+|.+|++.++...++ .+|...+... ...++|++|++|| .|+.. .+...+
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~E 268 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFY 268 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHH
Confidence 3578999999999999999999999999998765422222 1111111110 1256899999996 58865 356666
Q ss_pred HHHHHHHc---CCCeEEEEeCCCCcCHHHHHHHHHHHHHhh
Q psy4094 592 IDEFIKEH---NFSGWFETSAKDNINIDDAAKTLVQKILEN 629 (663)
Q Consensus 592 i~qlak~~---g~i~ffEtSAKtGeNVeELFe~IIr~Ile~ 629 (663)
+.+.+... ....+..|||.+|+|+.|-++||++.+..+
T Consensus 269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 55544332 223578999999999999999999887543
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.68 E-value=1.4e-07 Score=101.40 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=63.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCC-CCccccceeeeceeEEEecCCce--------------eEEEEEEeCCCccc--
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFF-SPHYRATIGVDFALKVLSWDHET--------------IIRLQLWDIAGQER-- 520 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~f-see~~~TigiDf~~ktV~vdge~--------------~vkLqIwDTpGQEr-- 520 (663)
..+|+|||.+|||||||++.+.+... .....++.+++...-.+.+.+.. ...+.+||++|...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 47999999999999999999999766 45555655556555556655410 13589999999532
Q ss_pred -----hhhhHHHHHhcCcEEEEEEeCCC
Q psy4094 521 -----FGNMTRVYYKEAVGAFIVFDVTR 543 (663)
Q Consensus 521 -----frsl~~~~~r~ADgaILVyDVTd 543 (663)
+......+++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33345566789999999999874
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.59 E-value=1.1e-07 Score=100.78 Aligned_cols=98 Identities=17% Similarity=0.141 Sum_probs=76.3
Q ss_pred CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH--
Q psy4094 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDE-- 594 (663)
Q Consensus 517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~q-- 594 (663)
.+++|+.++..+++.++++|+|||+++.. ..|...+.+++ .+.|+|||+||+||.... +..+.+.+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~--~~~~~~~~~l 122 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-----GNNKVLLVGNKADLIPKS--VKHDKVKHWM 122 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-----SSSCEEEEEECGGGSCTT--SCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-----CCCcEEEEEEChhcCCcc--cCHHHHHHHH
Confidence 46889999999999999999999999743 56777777653 268999999999997543 33344443
Q ss_pred --HHHHcCC--CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 595 --FIKEHNF--SGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 595 --lak~~g~--i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
++...|. ..++.+||++|.|++++++.|.+..
T Consensus 123 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 123 RYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 3566665 2689999999999999999987654
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.47 E-value=3.1e-07 Score=97.32 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=75.0
Q ss_pred CccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-
Q psy4094 517 GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF- 595 (663)
Q Consensus 517 GQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql- 595 (663)
.|++|+.++..+++.++++|+|+|+++..+ .|+..+..++ .+.|+|||+||+||.... ...+.+.++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-----~~~piilV~NK~DLl~~~--~~~~~~~~~l 124 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-----ADNPILLVGNKADLLPRS--VKYPKLLRWM 124 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-----TTSCEEEEEECGGGSCTT--CCHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-----CCCCEEEEEEChhcCCCc--cCHHHHHHHH
Confidence 588999999999999999999999998773 5666666543 258999999999997542 333444443
Q ss_pred ---HHHcCC--CeEEEEeCCCCcCHHHHHHHHHHHH
Q psy4094 596 ---IKEHNF--SGWFETSAKDNINIDDAAKTLVQKI 626 (663)
Q Consensus 596 ---ak~~g~--i~ffEtSAKtGeNVeELFe~IIr~I 626 (663)
+...|. ..++.+||++|.|++++++.|.+.+
T Consensus 125 ~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 125 RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 555665 3689999999999999999987654
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.36 E-value=4.6e-07 Score=100.41 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=85.8
Q ss_pred eeEEEEEeCCCCCHHHHHHHHH------hCCCC---C-ccccc-----------eeeeceeEEEe-------------cC
Q psy4094 458 LYKILVIGELGAGKTSIIKRYV------HQFFS---P-HYRAT-----------IGVDFALKVLS-------------WD 503 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLl------g~~fs---e-e~~~T-----------igiDf~~ktV~-------------vd 503 (663)
...|+|+|.+||||||+++.+. +.... . .+.+. .++.++..... +.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998 32210 0 00110 01111110000 00
Q ss_pred -CceeEEEEEEeCCCccchh-hhHH---HH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcE-EEEE
Q psy4094 504 -HETIIRLQLWDIAGQERFG-NMTR---VY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC-VLLA 575 (663)
Q Consensus 504 -ge~~vkLqIwDTpGQErfr-sl~~---~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPI-ILVG 575 (663)
. .+.+.||||+|..... .++. .+ +..+|.+|+|+|.+..... ......+... +|+ ++|.
T Consensus 181 ~~--~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~--------~~i~gvVl 247 (504)
T 2j37_W 181 NE--NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK--------VDVASVIV 247 (504)
T ss_dssp HT--TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH--------HCCCCEEE
T ss_pred HC--CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh--------cCceEEEE
Confidence 1 2578999999975321 1111 11 2378999999999876431 1222333321 464 8999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHcCC-----------------CeEEEEeCCCCcC-HHHHHHHHHHH
Q psy4094 576 NKCDQPKEGIANNPAKIDEFIKEHNF-----------------SGWFETSAKDNIN-IDDAAKTLVQK 625 (663)
Q Consensus 576 NKsDL~der~~Vs~eei~qlak~~g~-----------------i~ffEtSAKtGeN-VeELFe~IIr~ 625 (663)
||+|..... ..+..+...++. .+.+.+|+..|.+ +.+|++++.+.
T Consensus 248 NK~D~~~~~-----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 248 TKLDGHAKG-----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ECTTSCCCC-----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eCCccccch-----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999986422 112233333332 1223579999999 99999998765
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.12 E-value=3e-06 Score=86.69 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=70.2
Q ss_pred EEeCCCcc-chhhhHHHHHhcCcEEEEEEeCCCcccHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCC
Q psy4094 512 LWDIAGQE-RFGNMTRVYYKEAVGAFIVFDVTRAATFD--AVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANN 588 (663)
Q Consensus 512 IwDTpGQE-rfrsl~~~~~r~ADgaILVyDVTd~~SFe--~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs 588 (663)
|-..|||. .........+.++|++|+|+|+.++.++. .+..|+ .+.|+|+|+||+||.+.. .
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------------~~kp~ilVlNK~DL~~~~---~ 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------------KNKPRIMLLNKADKADAA---V 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------------SSSCEEEEEECGGGSCHH---H
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------------CCCCEEEEEECcccCCHH---H
Confidence 44578876 55667777899999999999999987765 333332 358999999999986521 1
Q ss_pred HHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHh
Q psy4094 589 PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628 (663)
Q Consensus 589 ~eei~qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~Ile 628 (663)
.+...++....+. +++.+||+++.|++++++.+.+.+..
T Consensus 68 ~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 68 TQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHH
Confidence 2223334444464 79999999999999999988877654
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.91 E-value=6.7e-05 Score=81.76 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=23.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCC
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFF 483 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~f 483 (663)
.++|+|||.+|+|||||++.+++..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 46799999999999999999998654
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.87 E-value=0.00026 Score=76.70 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=86.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccce-eeec--eeEEEecCCceeEEEEEEeCCCccchhhhHHHH-----Hh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATI-GVDF--ALKVLSWDHETIIRLQLWDIAGQERFGNMTRVY-----YK 530 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~Ti-giDf--~~ktV~vdge~~vkLqIwDTpGQErfrsl~~~~-----~r 530 (663)
..|+|+|.+|+|||||++.+++-.....-.-.+ +.+. ....... .. .-.+.+||++|-.........+ +.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SS-CTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cc-cCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 379999999999999999999843221111111 1110 0011111 11 1147899999853211112222 23
Q ss_pred cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC--C----CCCCCCHH----HHHHHHH---
Q psy4094 531 EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP--K----EGIANNPA----KIDEFIK--- 597 (663)
Q Consensus 531 ~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~--d----er~~Vs~e----ei~qlak--- 597 (663)
..+.+++ +|.... .-+++ .+...+.. .+.|+++|.||.|+. + .-.....+ .+++++.
T Consensus 148 ~~~~~~~-lS~G~~-~kqrv-~la~aL~~-------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 148 EYDFFII-ISATRF-KKNDI-DIAKAISM-------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp GCSEEEE-EESSCC-CHHHH-HHHHHHHH-------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCc-cHHHH-HHHHHHHh-------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4455554 776531 22222 22233331 248999999999962 1 00011223 3333431
Q ss_pred -HcC--CCeEEEEeC--CCCcCHHHHHHHHHHHHHhhhh
Q psy4094 598 -EHN--FSGWFETSA--KDNINIDDAAKTLVQKILENDK 631 (663)
Q Consensus 598 -~~g--~i~ffEtSA--KtGeNVeELFe~IIr~Ile~~k 631 (663)
..+ ....|.+|+ ..++|++++.+.|.+.+.+...
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 222 235788999 6667899999999888766554
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.85 E-value=2.9e-06 Score=89.89 Aligned_cols=136 Identities=12% Similarity=0.122 Sum_probs=78.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC------CCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccchh--------hh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ------FFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFG--------NM 524 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~------~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfr--------sl 524 (663)
.+|+|+|.+|||||||+|.+++. .......+..+.+ ...+.++.. +.++||||-.... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~----~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG----ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT----CEEEECCSCCCCSSGGGGSCTTT
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC----eEEEeCCCcCcHHHHHHHHhHHH
Confidence 47999999999999999999975 2222333333322 333444443 7899999953221 12
Q ss_pred HHHHH--hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCC
Q psy4094 525 TRVYY--KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFS 602 (663)
Q Consensus 525 ~~~~~--r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qlak~~g~i 602 (663)
...++ ...+.++++++......+..+.. + . .....++|+++++||.|..... ........+.+..|.
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l----~---~l~~~~~~~~~v~~k~d~~~~~--~~~~~~~~~~~~~g~- 305 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR-L----D---YIKGGRRSFVCYMANELTVHRT--KLEKADSLYANQLGE- 305 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-E----E---EEESSSEEEEEEECTTSCEEEE--EGGGHHHHHHHHBTT-
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE-E----E---EccCCCceEEEEecCCcccccc--cHHHHHHHHHHhcCC-
Confidence 22232 66889999998753321111111 1 1 1123468999999999975422 223333444455554
Q ss_pred eEEEEeCCC
Q psy4094 603 GWFETSAKD 611 (663)
Q Consensus 603 ~ffEtSAKt 611 (663)
.++..++..
T Consensus 306 ~l~p~~~~~ 314 (369)
T 3ec1_A 306 LLSPPSKRY 314 (369)
T ss_dssp TBCSSCGGG
T ss_pred ccCCCCchh
Confidence 445555443
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.79 E-value=9e-05 Score=75.31 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=21.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|+|++|+|||||++.+++
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999999986
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.69 E-value=1.8e-05 Score=83.81 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCC-------CccccceeeeceeEEEecCCceeEEEEEEeCCCccchhh--------
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFS-------PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGN-------- 523 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fs-------ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQErfrs-------- 523 (663)
.+|+++|.+|||||||+|++++.... ....+..+ .....+.+... +.++||||-.....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~----~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE----SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS----CEEEECCCBCCTTSGGGGSCHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC----eEEEeCCCcCcHHHHHHHhhHH
Confidence 47999999999999999999875211 11222222 22333444443 78999999543221
Q ss_pred hHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-HHHcC
Q psy4094 524 MTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-IKEHN 600 (663)
Q Consensus 524 l~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ql-ak~~g 600 (663)
....+ ....+.++++++......+..+.. + . .....++|+++|+||.|..... ..+.+.++ .+..|
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~----d---~l~~~~~~~~~v~nk~d~~~~~---~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-F----D---YVSGGRRAFTCHFSNRLTIHRT---KLEKADELYKNHAG 303 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE-E----E---EEESSSEEEEEEECTTSCEEEE---EHHHHHHHHHHHBT
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE-E----E---EecCCCceEEEEecCccccccc---cHHHHHHHHHHHhC
Confidence 11122 245678888887743221111110 1 1 1123468999999999976532 23444444 44455
Q ss_pred C
Q psy4094 601 F 601 (663)
Q Consensus 601 ~ 601 (663)
.
T Consensus 304 ~ 304 (368)
T 3h2y_A 304 D 304 (368)
T ss_dssp T
T ss_pred C
Confidence 3
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.61 E-value=0.00014 Score=79.70 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=51.9
Q ss_pred EEEEEEeCCCccchh-----hhHH-HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFG-----NMTR-VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfr-----sl~~-~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+||+|..... .+.. .....+|.++||+|.+..... ......+... -.+..||.||.|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~-------~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA-------TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS-------CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh-------CCCeEEEEECCCCc
Confidence 568999999943211 1111 123468999999999875432 2233444422 13457999999975
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
.. ...+..+....+. ++.+++.
T Consensus 253 ~~-----gG~~ls~~~~~g~-PI~fig~ 274 (443)
T 3dm5_A 253 AK-----GGGALSAVAATGA-PIKFIGT 274 (443)
T ss_dssp SS-----HHHHHHHHHTTCC-CEEEEEC
T ss_pred cc-----ccHHHHHHHHHCC-CEEEEEc
Confidence 42 2345556666774 7777776
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.60 E-value=9.6e-05 Score=80.29 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=48.3
Q ss_pred EEEEEEeCCCccchhh-hHH---HH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCC-c-EEEEEeCCC
Q psy4094 508 IRLQLWDIAGQERFGN-MTR---VY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPI-P-CVLLANKCD 579 (663)
Q Consensus 508 vkLqIwDTpGQErfrs-l~~---~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~I-P-IILVGNKsD 579 (663)
+.+.|+||+|...... +.. .+ +..+|.++||+|.+.... +......+. ..+ + ..+|.||+|
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~--------~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK--------EAVGEIGSIIVTKLD 249 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH--------TTSCSCEEEEEECSS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh--------hcccCCeEEEEeCCC
Confidence 5689999999654221 111 11 125899999999876532 222233333 124 5 789999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q psy4094 580 QPKEGIANNPAKIDEFIKEHNFSGWFET 607 (663)
Q Consensus 580 L~der~~Vs~eei~qlak~~g~i~ffEt 607 (663)
..... ..+..+....+. ++..+
T Consensus 250 ~~~~~-----g~~l~~~~~~~~-pi~~i 271 (432)
T 2v3c_C 250 GSAKG-----GGALSAVAETKA-PIKFI 271 (432)
T ss_dssp SCSTT-----HHHHHHHHHSSC-CEEEE
T ss_pred Cccch-----HHHHHHHHHHCC-CEEEe
Confidence 75321 234456666664 44444
No 224
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.59 E-value=1.3e-05 Score=86.89 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=64.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCcc--chhhhH--------HH
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE--RFGNMT--------RV 527 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE--rfrsl~--------~~ 527 (663)
.++|+|+|.+|+|||||.++|..... .....+.+++.........+. .+...+||..|++ +++..+ ..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~-~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKT-YKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCS-CCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccC-CCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999875321 112233332221111111111 1335789999984 344444 66
Q ss_pred HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHh
Q psy4094 528 YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDA 559 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~ 559 (663)
++..+++.++|||.++. .+.....|+..+..
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 77778999999999987 67777888877765
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.56 E-value=4.8e-05 Score=77.01 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=36.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCCCCCccccceeeeceeEEEecCCceeEEEEEEeCCCccc
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~fsee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQEr 520 (663)
++|+|+|.+|||||||+++|.+..... ...+.|.......+.++. .+.||||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~----~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN----GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT----SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC----CEEEEECCCccc
Confidence 699999999999999999999866532 223333333333444443 378999999764
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.44 E-value=5.8e-05 Score=76.41 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=62.4
Q ss_pred CCCcc-chhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHH
Q psy4094 515 IAGQE-RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID 593 (663)
Q Consensus 515 TpGQE-rfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~ 593 (663)
.|||. .........+.++|++|+|+|+.++.+.... .+. + . ++|+|+|+||+||.+.. ..+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l-----l-~k~~iivlNK~DL~~~~---~~~~~~ 68 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F-----S-RKETIILLNKVDIADEK---TTKKWV 68 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C-----T-TSEEEEEEECGGGSCHH---HHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h-----c-CCCcEEEEECccCCCHH---HHHHHH
Confidence 46775 3345667778999999999999988765431 011 1 1 58999999999996521 122334
Q ss_pred HHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Q psy4094 594 EFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625 (663)
Q Consensus 594 qlak~~g~i~ffEtSAKtGeNVeELFe~IIr~ 625 (663)
.+....+. ++ .+||+++.|+++++..|...
T Consensus 69 ~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 69 EFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence 44555564 57 99999999999998876543
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.35 E-value=0.0002 Score=73.18 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=35.0
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhCCCC-CccccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQFFS-PHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~~fs-ee~~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
.++|+|+|.+|||||||+|++.+.... ....+.++.+.. .+.++. .+.+|||||..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~----~~~l~DtpG~~ 176 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK----ELELLDTPGIL 176 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT----TEEEEECCCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC----CEEEEECcCcC
Confidence 489999999999999999999986532 223333333332 233333 37899999964
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.32 E-value=0.00014 Score=79.32 Aligned_cols=90 Identities=9% Similarity=0.022 Sum_probs=54.6
Q ss_pred EEEEEEeCCCccc------hhhhHHHH--HhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 508 IRLQLWDIAGQER------FGNMTRVY--YKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 508 vkLqIwDTpGQEr------frsl~~~~--~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
+.+.|+||+|... +....... ....+.++||+|....... ......+...+ .+..||.||.|
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~-------~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS-------PIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC-------SSEEEEEECGG
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc-------CCcEEEEeccc
Confidence 5678999999533 11111111 2256899999999875432 22334444321 34679999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCH
Q psy4094 580 QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615 (663)
Q Consensus 580 L~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNV 615 (663)
... ....+..++...+. ++.+++. |+++
T Consensus 250 ~~a-----~~G~als~~~~~g~-Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTA-----KGGGALSAVVATGA-TIKFIGT--GEKI 277 (433)
T ss_dssp GCS-----CHHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred ccc-----cchHHHHHHHHHCC-CEEEEEC--CCCh
Confidence 753 23455666667774 7777776 5544
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.19 E-value=0.00057 Score=70.51 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=56.8
Q ss_pred EEEEEEeCCCccc--hh-hhHH-----HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q psy4094 508 IRLQLWDIAGQER--FG-NMTR-----VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKC 578 (663)
Q Consensus 508 vkLqIwDTpGQEr--fr-sl~~-----~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKs 578 (663)
+.+.|+||+|... .. .+.. ..+..+|.+++|+|.+... .....+..+.. .++ ..+|.||+
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk~ 249 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITKM 249 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEECG
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeCC
Confidence 5689999999765 22 1221 2345799999999987532 22222333332 245 67899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 579 DL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
|... ....+..++...+. ++.+++ .|++++++
T Consensus 250 D~~~-----~~g~~~~~~~~~~~-pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTA-----KGGGALSAVAATGA-TIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCT-----THHHHHHHHHTTTC-CEEEEE--CSSSTTCE
T ss_pred CCCc-----chHHHHHHHHHHCc-CEEEEe--CCCChhhc
Confidence 9743 23445667777774 677766 46666543
No 230
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.84 E-value=0.0018 Score=73.16 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=38.1
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhCCCCCcc-----ccceeeeceeEEEecCCceeEEEEEEeCCCcc
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQFFSPHY-----RATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~~fsee~-----~~TigiDf~~ktV~vdge~~vkLqIwDTpGQE 519 (663)
..+.|+|+|.+|||||||+|++++....... ..|.|+-.....+...+ ...+.|+||+|-.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~--~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKP--GHILVLLDTEGLG 102 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSST--TCEEEEEEECCBC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCC--CceEEEecCCCcC
Confidence 4578999999999999999999986532111 12222211111111122 2468999999964
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.70 E-value=0.00049 Score=71.77 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=61.3
Q ss_pred hhHHHHHhcCcEEEEEEeCCCccc-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHHc
Q psy4094 523 NMTRVYYKEAVGAFIVFDVTRAAT-FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA--NNPAKIDEFIKEH 599 (663)
Q Consensus 523 sl~~~~~r~ADgaILVyDVTd~~S-Fe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~--Vs~eei~qlak~~ 599 (663)
.+.+..+.++|.+|+|+|+.++.. ...+..++.... ..++++|||.||+||.+.. . ...+....+....
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~-------~~~~~~vivlnK~DL~~~~-~~~~~~~~~~~~y~~~ 149 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-------ANDIQPIICITKMDLIEDQ-DTEDTIQAYAEDYRNI 149 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH-------TTTCEEEEEEECGGGCCCH-HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH-------HCCCCEEEEEECCccCchh-hhHHHHHHHHHHHHhC
Confidence 344457899999999999997654 445556654444 2468999999999997642 0 0012333344445
Q ss_pred CCCeEEEEeCCCCcCHHHHHHH
Q psy4094 600 NFSGWFETSAKDNINIDDAAKT 621 (663)
Q Consensus 600 g~i~ffEtSAKtGeNVeELFe~ 621 (663)
|. +++.+||.++.|+++|+..
T Consensus 150 g~-~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 150 GY-DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp TC-CEEECCHHHHTTCTTTGGG
T ss_pred CC-eEEEEecCCCCCHHHHHhh
Confidence 64 7899999998888776654
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.65 E-value=0.0025 Score=71.76 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
.|+|||+.|+|||||++.+.|-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998753
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.56 E-value=0.0025 Score=59.57 Aligned_cols=84 Identities=11% Similarity=-0.037 Sum_probs=57.0
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIAN 587 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~V 587 (663)
+.+.|+|+++.. .......+..+|.+|++...+.. + ..+..+++.+..... ...++++.+|.|++|....
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~--~~~~~~~~vv~N~~~~~~~---- 145 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQA--YSRKVEARFLITRKIEMAT---- 145 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSC--GGGCCEEEEEECSBCTTEE----
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHH--hCCCCcEEEEEeccCCCch----
Confidence 568999999875 34556677789999999987654 4 677777777764311 1345778999999995321
Q ss_pred CHHHHHHHHHHcCC
Q psy4094 588 NPAKIDEFIKEHNF 601 (663)
Q Consensus 588 s~eei~qlak~~g~ 601 (663)
...++.+++..++.
T Consensus 146 ~~~~~~~~l~~~~~ 159 (206)
T 4dzz_A 146 MLNVLKESIKDTGV 159 (206)
T ss_dssp EEHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC
Confidence 23455666666663
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.40 E-value=0.0053 Score=64.32 Aligned_cols=92 Identities=13% Similarity=0.054 Sum_probs=53.3
Q ss_pred EEEEEeCCCccchhh-hH---HH--HHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q psy4094 509 RLQLWDIAGQERFGN-MT---RV--YYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPK 582 (663)
Q Consensus 509 kLqIwDTpGQErfrs-l~---~~--~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~d 582 (663)
.+.++|++|...... +. .. ..-..|-.+++.|.+... .+...+..+...+ -.-+|+.||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~-------~it~iilTKlD~~a 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV-------KIDGIILTKLDADA 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS-------CCCEEEEECGGGCS
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc-------CCCEEEEeCcCCcc
Confidence 456899999643221 11 11 122478899999987653 3334444444321 12378889999633
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH
Q psy4094 583 EGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA 618 (663)
Q Consensus 583 er~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL 618 (663)
. .-.+..++...+. ++.+++ +|++++++
T Consensus 283 ~-----~G~~l~~~~~~~~-pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 283 R-----GGAALSISYVIDA-PILFVG--VGQGYDDL 310 (328)
T ss_dssp C-----CHHHHHHHHHHTC-CEEEEE--CSSSTTCE
T ss_pred c-----hhHHHHHHHHHCC-CEEEEe--CCCCcccc
Confidence 2 2345567777774 677776 56665543
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.25 E-value=0.0058 Score=65.07 Aligned_cols=82 Identities=9% Similarity=0.121 Sum_probs=55.6
Q ss_pred HHhcCcEEEEEEeCCCcc-cHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HHcCCCe
Q psy4094 528 YYKEAVGAFIVFDVTRAA-TFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFI---KEHNFSG 603 (663)
Q Consensus 528 ~~r~ADgaILVyDVTd~~-SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~Vs~eei~qla---k~~g~i~ 603 (663)
...++|.+++|.+.. +. +...+..|+..... .++++|||.||+||.+.. ..+....+. ...|+ +
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~-------~~~~~iivlNK~DL~~~~---~~~~~~~~~~~y~~~G~-~ 194 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCET-------LQVEPLIVLNKIDLLDDE---GMDFVNEQMDIYRNIGY-R 194 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHH-------HTCEEEEEEECGGGCCHH---HHHHHHHHHHHHHTTTC-C
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCch---hHHHHHHHHHHHHhCCC-c
Confidence 367899999987764 54 45555666554432 358889999999997532 111233333 34564 7
Q ss_pred EEEEeCCCCcCHHHHHHH
Q psy4094 604 WFETSAKDNINIDDAAKT 621 (663)
Q Consensus 604 ffEtSAKtGeNVeELFe~ 621 (663)
++.+||.++.|++++...
T Consensus 195 v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 195 VLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp EEECBTTTTBTHHHHHHH
T ss_pred EEEEecCCCcCHHHHHHh
Confidence 899999999999998764
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.69 E-value=0.065 Score=58.18 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=44.8
Q ss_pred EEEEEEeCCCccchh-hhHH-----HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCC
Q psy4094 508 IRLQLWDIAGQERFG-NMTR-----VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLLANKCDQ 580 (663)
Q Consensus 508 vkLqIwDTpGQErfr-sl~~-----~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILVGNKsDL 580 (663)
+.+.|+||+|...+. .+.. ..+..++.+++|+|...... +...+..+... ++ .-+|.||.|.
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~--------l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA--------LPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH--------SCCCCEEEECTTS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc--------CCCeEEEEecCCC
Confidence 568999999965432 2221 12446899999999986532 22223333321 33 2479999997
Q ss_pred CCCCCCCCHHHHHHHHHHcCC
Q psy4094 581 PKEGIANNPAKIDEFIKEHNF 601 (663)
Q Consensus 581 ~der~~Vs~eei~qlak~~g~ 601 (663)
.... ..+..+....+.
T Consensus 253 ~~~~-----g~~l~i~~~~~~ 268 (433)
T 2xxa_A 253 DARG-----GAALSIRHITGK 268 (433)
T ss_dssp SSCC-----THHHHHHHHHCC
T ss_pred CccH-----HHHHHHHHHHCC
Confidence 4322 234455555553
No 237
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.38 E-value=0.026 Score=62.83 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|+|.+|+|||||++.+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4799999999999999998874
No 238
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.33 E-value=0.03 Score=53.92 Aligned_cols=82 Identities=10% Similarity=-0.016 Sum_probs=55.5
Q ss_pred EEEEEEeCCCc-cchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQ-ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIA 586 (663)
Q Consensus 508 vkLqIwDTpGQ-Erfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~der~~ 586 (663)
+.+.|+|+++. ... .....+..+|.+|++...+ ..++..+..+++.+... .+.++.+|.|+.|.....
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~------~~~~~~vv~N~~~~~~~~-- 136 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL------GNNRFRILLTIIPPYPSK-- 136 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT------CSSSEEEEECSBCCTTSC--
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc------cCCCEEEEEEecCCccch--
Confidence 56899999986 432 3455678899999999765 45666777777766642 146788999999854311
Q ss_pred CCHHHHHHHHHHcCC
Q psy4094 587 NNPAKIDEFIKEHNF 601 (663)
Q Consensus 587 Vs~eei~qlak~~g~ 601 (663)
...++.++++.++.
T Consensus 137 -~~~~~~~~l~~~g~ 150 (209)
T 3cwq_A 137 -DGDEARQLLTTAGL 150 (209)
T ss_dssp -HHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHcCC
Confidence 24556666666653
No 239
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.28 E-value=0.1 Score=57.05 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=40.4
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHhC------------------CCC---Cccccceeeecee--EEEecCCceeEEEEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVHQ------------------FFS---PHYRATIGVDFAL--KVLSWDHETIIRLQLW 513 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg~------------------~fs---ee~~~TigiDf~~--ktV~vdge~~vkLqIw 513 (663)
...-|.|+|..++|||+|+|+|++. .|. .....|.|+-... ..+....+..+.+.+.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4567999999999999999999863 232 1223344443222 1222222335789999
Q ss_pred eCCCcc
Q psy4094 514 DIAGQE 519 (663)
Q Consensus 514 DTpGQE 519 (663)
||+|..
T Consensus 146 DTeG~~ 151 (447)
T 3q5d_A 146 DTQGTF 151 (447)
T ss_dssp EEECCC
T ss_pred cCCccc
Confidence 999964
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.18 E-value=0.029 Score=60.99 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=56.2
Q ss_pred EEEEEEeCCCccchh-hhHH-----HHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFG-NMTR-----VYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfr-sl~~-----~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+||+|..... .+.. ..+-.+|.+|||+|.... ..+......+...+ ....+|.||.|..
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l-------~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV-------GVTGLVLTKLDGD 250 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT-------CCCEEEEESGGGC
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC-------CceEEEEeCcCCc
Confidence 568999999964321 1111 112358999999998743 22223333343221 1245788999964
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHH----HHHHHHHHHh
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDA----AKTLVQKILE 628 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeEL----Fe~IIr~Ile 628 (663)
.. ...+..++...+. ++.++.. |+.++++ -+.+++.++.
T Consensus 251 ~~-----~g~alsi~~~~g~-PI~flg~--Ge~~~dl~~f~~~~~a~~ilg 293 (425)
T 2ffh_A 251 AR-----GGAALSARHVTGK-PIYFAGV--SEKPEGLEPFYPERLAGRILG 293 (425)
T ss_dssp SS-----CHHHHHHHHHHCC-CEEEEEC--SSSGGGEEECCHHHHHHHHHT
T ss_pred cc-----HHHHHHHHHHHCC-CEEEEeC--CCChhhccccCHHHHHHHHhc
Confidence 32 2345556667774 6666553 4444433 2445555543
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.13 E-value=0.069 Score=54.84 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=47.3
Q ss_pred EEEEEEeCCCccchhh-hHH---HHHh--cCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q psy4094 508 IRLQLWDIAGQERFGN-MTR---VYYK--EAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQP 581 (663)
Q Consensus 508 vkLqIwDTpGQErfrs-l~~---~~~r--~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsDL~ 581 (663)
+.+.|+||+|...... +.. ..+. ..+.+++|+|.+.. ...+..|...+. .-++ .-+|.||.|..
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~-------~l~~-~giVltk~D~~ 252 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS-------SVPV-NQYIFTKIDET 252 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS-------SSCC-CEEEEECTTTC
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh-------cCCC-CEEEEeCCCcc
Confidence 4689999999653321 111 2222 36788899988742 344444433222 1112 24667999975
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEe
Q psy4094 582 KEGIANNPAKIDEFIKEHNFSGWFETS 608 (663)
Q Consensus 582 der~~Vs~eei~qlak~~g~i~ffEtS 608 (663)
... ..+..++...+. ++..+.
T Consensus 253 ~~~-----g~~~~~~~~~~~-pi~~i~ 273 (296)
T 2px0_A 253 TSL-----GSVFNILAESKI-GVGFMT 273 (296)
T ss_dssp SCC-----HHHHHHHHTCSC-CCSEEC
T ss_pred cch-----hHHHHHHHHHCc-CEEEEE
Confidence 422 356677777774 444443
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.69 E-value=0.061 Score=55.99 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=55.8
Q ss_pred EEEEEEeCCCccchh-hhHH------HHH-----hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCc-EEEE
Q psy4094 508 IRLQLWDIAGQERFG-NMTR------VYY-----KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP-CVLL 574 (663)
Q Consensus 508 vkLqIwDTpGQErfr-sl~~------~~~-----r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IP-IILV 574 (663)
+.+.|+||+|..... .++. ..+ ..+|.+++|+|.+.. .+.+... ..+.. ..+ .-+|
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~-~~~~~--------~~~i~GvV 260 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA-EEFSK--------VADVSGII 260 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH-HHHTT--------TSCCCEEE
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH-HHHhh--------cCCCcEEE
Confidence 578999999965432 1111 111 237899999998743 3333222 22221 122 3488
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHH----HHHHHHHHh
Q psy4094 575 ANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA----KTLVQKILE 628 (663)
Q Consensus 575 GNKsDL~der~~Vs~eei~qlak~~g~i~ffEtSAKtGeNVeELF----e~IIr~Ile 628 (663)
.||.|.... ...+..++..++. ++.++. .|++++++- +++++.++.
T Consensus 261 ltk~d~~~~-----~g~~~~~~~~~~~-Pi~~i~--~Ge~~~dl~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 261 LTKMDSTSK-----GGIGLAIKELLNI-PIKMIG--VGEKVDDLLAFDIDQYIVHLSS 310 (320)
T ss_dssp EECGGGCSC-----TTHHHHHHHHHCC-CEEEEE--CSSSTTCEEECCHHHHHHHHTG
T ss_pred EeCCCCCCc-----hhHHHHHHHHHCc-CEEEEe--CCCCccccccCCHHHHHHHHhC
Confidence 999996432 1356677777774 665554 344444332 345555543
No 243
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.58 E-value=0.36 Score=48.53 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=53.5
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEGIA 586 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der~~ 586 (663)
+.+.|+|+++...... ....+..||.+|+|...+ ..++..+..++..+... ....+++++ +|.|+++- +
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~~~~gvV~N~~~~---~-- 226 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK---SKNYKVRLAGCVANRSRA---T-- 226 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT---TTTCCCEEEEEEEESCSC---C--
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh---hhcCCCceEEEEEecCCc---H--
Confidence 6789999987543221 223567899999999654 56677777777777642 123456766 99999983 1
Q ss_pred CCHHHHHHHHHHcCC
Q psy4094 587 NNPAKIDEFIKEHNF 601 (663)
Q Consensus 587 Vs~eei~qlak~~g~ 601 (663)
..+.+++..++.
T Consensus 227 ---~~~~~~~~~~g~ 238 (307)
T 3end_A 227 ---DEVDRFCKETNF 238 (307)
T ss_dssp ---HHHHHHHHHHTC
T ss_pred ---HHHHHHHHHcCC
Confidence 345666666664
No 244
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.31 E-value=0.082 Score=48.52 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|+..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998875
No 245
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.94 E-value=0.031 Score=53.13 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
+|+|+|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988763
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.69 E-value=0.034 Score=51.98 Aligned_cols=22 Identities=18% Similarity=0.552 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|+|++|+|||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999863
No 247
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.65 E-value=0.74 Score=43.69 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=44.7
Q ss_pred eEEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q psy4094 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCD 579 (663)
Q Consensus 507 ~vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVGNKsD 579 (663)
.+.+.|+|+++.... .....+..+|.+|++...+ ..++..+..+++.+... + -..+.+|.|+.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~----~--~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL----G--IKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH----T--CSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc----C--CccEEEEEeCCC
Confidence 367899999975433 4556678899999999764 56666666666544432 1 145789999998
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.50 E-value=0.039 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|+|.+|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999998864
No 249
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.50 E-value=0.037 Score=52.77 Aligned_cols=21 Identities=29% Similarity=0.681 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|++|+|||||++.+++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999876
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.34 E-value=0.045 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-.|+|+|.+|+|||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999874
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.28 E-value=0.041 Score=51.56 Aligned_cols=21 Identities=29% Similarity=0.692 Sum_probs=19.2
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
|+|+|++|+|||||++.+++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999863
No 252
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.20 E-value=0.083 Score=48.83 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.06 E-value=0.047 Score=52.02 Aligned_cols=22 Identities=14% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.57 E-value=0.06 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|+|++|+|||||++.+++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 255
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.53 E-value=0.052 Score=50.51 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLl 479 (663)
-++|+|.+|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999754
No 256
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.51 E-value=0.082 Score=56.29 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQFF 483 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~f 483 (663)
.++|+|.+|||||||++.+++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997543
No 257
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.41 E-value=0.094 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+|||||++.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.39 E-value=0.067 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|+|++|+|||||++.+++.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999874
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.18 E-value=0.075 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|+|++|+|||||++.++..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999865
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.14 E-value=0.077 Score=49.43 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
..|+|+|.+|+|||||++.+.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 369999999999999999988753
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.13 E-value=0.076 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
.|+|+|+.|+|||||++.+++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998754
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.99 E-value=0.082 Score=47.08 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=18.0
Q ss_pred EEEEEeCCCCCHHHHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRY 478 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrL 478 (663)
-|+|+|.+|+||||+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999988
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.97 E-value=0.094 Score=49.97 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+|||||++.+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.87 E-value=0.09 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+|||||++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998875
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.81 E-value=0.11 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|..|+|||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 266
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.80 E-value=0.089 Score=49.62 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.76 E-value=0.096 Score=47.11 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+||||+++.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.75 E-value=0.089 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|+|.+|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999875
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.57 E-value=0.094 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.692 Sum_probs=19.3
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
|+|+|++||||+||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 899999999999999999853
No 270
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.52 E-value=0.096 Score=50.05 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=18.7
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLl 479 (663)
-++|+|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999887
No 271
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.51 E-value=0.099 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.-|+|+|.+|||||||++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 272
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.49 E-value=0.1 Score=47.31 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 273
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.40 E-value=0.1 Score=49.25 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+|||||++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 274
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.38 E-value=0.1 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|+|++|||||||++.++..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999863
No 275
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.37 E-value=0.65 Score=46.88 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
No 276
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.28 E-value=0.092 Score=51.97 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999888763
No 277
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.24 E-value=0.12 Score=48.40 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
++|+|+|..|+|||||++.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 278
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.24 E-value=0.1 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888763
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.17 E-value=0.13 Score=47.67 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 280
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.15 E-value=0.12 Score=46.27 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 281
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.07 E-value=0.12 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLl 479 (663)
..|+|+|.+|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999988
No 282
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.07 E-value=0.1 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|+|++|+|||||++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998876
No 283
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.07 E-value=0.47 Score=42.68 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|++|+|||+|++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3699999999999999976643
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.05 E-value=0.14 Score=46.89 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 285
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.04 E-value=0.12 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
+|+|+|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
No 286
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.98 E-value=0.58 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|++|+|||+|++.+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999986654
No 287
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.92 E-value=0.51 Score=47.80 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEeCCCCCHHHHHHHHHh
Q psy4094 461 ILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg 480 (663)
++|+|++|+|||||++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 288
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.90 E-value=0.12 Score=48.52 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+|||||++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 289
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.87 E-value=0.13 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
++|+|+|.+|+||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 290
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.84 E-value=0.18 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|.+|+||||+++.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 291
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.83 E-value=0.077 Score=55.25 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|.+|||||||++.+++.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 7999999999999999999864
No 292
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.79 E-value=0.12 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988874
No 293
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.64 E-value=0.14 Score=46.79 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|+|.+|+||||+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 294
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.59 E-value=0.12 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988764
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.54 E-value=0.15 Score=48.07 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|+|.+|+||||+++.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 296
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.45 E-value=0.13 Score=49.54 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998876
No 297
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.41 E-value=0.12 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988764
No 298
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.37 E-value=0.16 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 299
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.30 E-value=0.17 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
+.|+|+|..|+||||+++.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.29 E-value=0.17 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|.+|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 301
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.25 E-value=0.14 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988763
No 302
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.24 E-value=0.13 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988764
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.23 E-value=0.14 Score=50.95 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998874
No 304
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.18 E-value=0.14 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999888763
No 305
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.16 E-value=0.14 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999888764
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.16 E-value=0.19 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
+.|+|+|.+|+||||+++.|..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 307
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.15 E-value=0.13 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999888764
No 308
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.09 E-value=0.15 Score=51.43 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998874
No 309
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.08 E-value=0.15 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988764
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.07 E-value=0.1 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=14.9
Q ss_pred EEEEEeCCCCCHHHHHHHHH-hC
Q psy4094 460 KILVIGELGAGKTSIIKRYV-HQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLl-g~ 481 (663)
-|+|+|..|+|||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998 54
No 311
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.02 E-value=0.16 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|+|.+|+|||||++.+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988865
No 312
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.02 E-value=0.21 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 313
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.99 E-value=0.14 Score=52.22 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988763
No 314
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.94 E-value=0.14 Score=51.74 Aligned_cols=22 Identities=27% Similarity=0.538 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988763
No 315
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.93 E-value=0.17 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-++|+|++|+|||||+..+++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999884
No 316
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.92 E-value=0.18 Score=46.37 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 317
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.90 E-value=0.13 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 318
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.90 E-value=0.21 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 319
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.81 E-value=0.83 Score=41.02 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
..|+|.|++|+|||+|++.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 36999999999999999888653
No 320
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.80 E-value=0.24 Score=49.91 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
++|.|++|+|||+|++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 321
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.77 E-value=0.15 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6899999999999999888764
No 322
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.74 E-value=0.15 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999988764
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.64 E-value=0.16 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 324
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.62 E-value=0.17 Score=50.92 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999988764
No 325
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.53 E-value=0.2 Score=47.68 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
+|+|+|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 326
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.48 E-value=0.17 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999988764
No 327
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.45 E-value=0.17 Score=51.16 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999888764
No 328
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.44 E-value=0.16 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999888763
No 329
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.37 E-value=0.23 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|.+|+||||+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.35 E-value=0.23 Score=45.41 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.31 E-value=0.16 Score=52.93 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-+++|+|.+|+|||||++.+.+-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998874
No 332
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.29 E-value=0.16 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|.|++|+|||+|++.+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.29 E-value=0.31 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
..|+|+|.+|+|||||++.+.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999999999988763
No 334
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.27 E-value=0.17 Score=50.72 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 335
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.09 E-value=0.82 Score=45.49 Aligned_cols=86 Identities=10% Similarity=0.087 Sum_probs=51.0
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEGIA 586 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der~~ 586 (663)
+.+.|+|+++.... .....+..+|.+|++...+ ..++..+..++..+...... ...+++++ +|.|+.|....
T Consensus 155 yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~n~~~~~~~--- 227 (298)
T 2oze_A 155 YDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQ-FNPGLDMIGFVPYLVDTDSA--- 227 (298)
T ss_dssp CSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHH-HCTTCEEEEEEEEESCTTCH---
T ss_pred CCEEEEECCCCccH--HHHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEEEEEECCCcH---
Confidence 67899999986533 2334455699999999765 45566665555544432110 12356654 89999985331
Q ss_pred CCHHHHHHHHHHcC
Q psy4094 587 NNPAKIDEFIKEHN 600 (663)
Q Consensus 587 Vs~eei~qlak~~g 600 (663)
...+.+.++...++
T Consensus 228 ~~~~~~~~~~~~~~ 241 (298)
T 2oze_A 228 TIKSNLEELYKQHK 241 (298)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 12334455555554
No 336
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.03 E-value=0.23 Score=47.34 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
+.|+|+|.+|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 337
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.01 E-value=0.2 Score=50.38 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|+.|+|||||++.+++
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 699999999999999998876
No 338
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=88.89 E-value=4.2 Score=44.75 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=39.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHH---h---------------CCCC---CccccceeeeceeEE--EecCCceeEEEEEE
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYV---H---------------QFFS---PHYRATIGVDFALKV--LSWDHETIIRLQLW 513 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLl---g---------------~~fs---ee~~~TigiDf~~kt--V~vdge~~vkLqIw 513 (663)
...=|.|+|..++|||+|+|.|+ . ..|. ....-|.|+-..... +....+..+.+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 45667799999999999999554 1 2232 123345565443322 33333336789999
Q ss_pred eCCCcc
Q psy4094 514 DIAGQE 519 (663)
Q Consensus 514 DTpGQE 519 (663)
||-|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999954
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.89 E-value=0.21 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|+|.+|+|||||++.+.+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 5799999999999999998876
No 340
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.86 E-value=0.24 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|..|+|||||++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.80 E-value=0.22 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|+|++|+|||+|++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998863
No 342
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.74 E-value=0.37 Score=49.20 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.3
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
++|.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 343
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.73 E-value=0.18 Score=51.37 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|.+|+|||||++.+.+.
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTT
T ss_pred eEEEECCCCCcHHHHHHHhccc
Confidence 6899999999999999999874
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.67 E-value=0.26 Score=44.45 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
+|+|.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.66 E-value=0.35 Score=45.23 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.61 E-value=0.26 Score=47.37 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 347
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.59 E-value=0.22 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.647 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
.++|+|++|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999887753
No 348
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.54 E-value=0.33 Score=44.25 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 349
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.53 E-value=0.22 Score=50.98 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLl 479 (663)
.++|+|.+|||||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 350
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.51 E-value=0.25 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.-|+|+|..|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 36899999999999999999863
No 351
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.50 E-value=0.24 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-++|+|.+|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 352
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.49 E-value=0.32 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.+.|+|+|..|+||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999998764
No 353
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.45 E-value=0.26 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|.|++|+|||+|++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998875
No 354
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.45 E-value=0.24 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|++|+|||||++.+++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 799999999999999998876
No 355
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.35 E-value=0.25 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999874
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.34 E-value=0.27 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
..|+|+|..|+||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999988764
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.28 E-value=0.28 Score=44.88 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|..|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 358
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.27 E-value=0.3 Score=44.93 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.24 E-value=0.24 Score=45.45 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
+|+|+|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988864
No 360
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.20 E-value=0.24 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988763
No 361
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.20 E-value=0.3 Score=47.98 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg 480 (663)
.+.|+|+|.+|+||||++.+|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 362
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.16 E-value=0.26 Score=45.27 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 363
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.15 E-value=0.3 Score=45.10 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 364
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.03 E-value=0.26 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|.+|+|||||+..+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.01 E-value=0.49 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|+|..|+|||||++.+++-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999988764
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.90 E-value=0.33 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|.+|+||||+++.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 367
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.89 E-value=0.3 Score=45.55 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
..|+|+|.+|+||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999988753
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.89 E-value=0.32 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
+.|+|+|.+|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988864
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.82 E-value=0.37 Score=45.66 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+|||||++.+.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 370
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.75 E-value=0.27 Score=49.54 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.4
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
|+|+|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998863
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.73 E-value=0.31 Score=44.89 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|.|..|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998865
No 372
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.66 E-value=0.4 Score=44.38 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 373
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.63 E-value=0.14 Score=48.09 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|+|.+|+|||||++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 374
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.61 E-value=0.32 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 375
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.58 E-value=0.31 Score=47.50 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|++|+||+|++.++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988864
No 376
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.55 E-value=0.17 Score=48.01 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+|||||++.+++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.47 E-value=0.29 Score=50.40 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
--|+|+|..|+|||||+..+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 378
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.46 E-value=0.28 Score=50.61 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+|||||++.+.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998873
No 379
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.43 E-value=0.29 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999988863
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.41 E-value=0.31 Score=46.53 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 381
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.37 E-value=0.33 Score=44.55 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=18.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 382
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=87.26 E-value=0.22 Score=45.71 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
No 383
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.25 E-value=0.31 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|+|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999998864
No 384
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.24 E-value=0.47 Score=48.11 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-++|.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 385
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.20 E-value=0.4 Score=47.49 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 386
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.13 E-value=0.41 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|..|+|||||++.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.98 E-value=0.35 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|.+|+||||+++.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 388
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.88 E-value=0.37 Score=44.97 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988875
No 389
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.84 E-value=0.32 Score=51.65 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999988864
No 390
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.77 E-value=0.35 Score=47.11 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 599999999999999998875
No 391
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.71 E-value=0.33 Score=51.61 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999988863
No 392
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.71 E-value=0.32 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5899999999999999988863
No 393
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.63 E-value=0.44 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.6
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg 480 (663)
..+.|+|+|.+|+|||||++.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988764
No 394
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.62 E-value=0.91 Score=47.63 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|+|..|+|||||++.+++-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998874
No 395
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.59 E-value=0.44 Score=49.85 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg 480 (663)
..+-|+|+|.+|+|||||++.+.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988865
No 396
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.56 E-value=0.26 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.726 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.-|+|+|..|+|||||++.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 57999999999999999887763
No 397
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.55 E-value=0.33 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5899999999999999988864
No 398
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.55 E-value=1.6 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-.|+|.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 36999999999999999998864
No 399
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.52 E-value=0.34 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998763
No 400
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.47 E-value=0.42 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|+|.+|+|||||+..+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.43 E-value=0.42 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.40 E-value=0.39 Score=44.16 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|..|+||||+++.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988865
No 403
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.39 E-value=0.35 Score=51.91 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5899999999999999988863
No 404
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.36 E-value=0.35 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 5899999999999999888763
No 405
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.29 E-value=0.36 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5899999999999999988763
No 406
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.19 E-value=0.38 Score=47.72 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|+|.+|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999864
No 407
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.18 E-value=0.4 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-++|+|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888864
No 408
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.18 E-value=0.4 Score=44.12 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 409
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=86.17 E-value=0.41 Score=50.39 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
+++|+|++|+|||||++.+++.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999875
No 410
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.11 E-value=0.24 Score=51.47 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|..|+|||||++.+++
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 799999999999999988775
No 411
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.11 E-value=1.7 Score=46.67 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|.|++|+|||+|++.+...
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998864
No 412
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.99 E-value=0.79 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|.|.+|+|||+|+..++.
T Consensus 76 li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 478899999999999998874
No 413
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=85.93 E-value=2.4 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
..|+|.|++|+|||+|++.+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998653
No 414
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.90 E-value=0.28 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=15.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|.+|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 415
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.78 E-value=0.42 Score=47.55 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-++|+|++|+|||||+..+++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999885
No 416
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=85.72 E-value=0.45 Score=47.05 Aligned_cols=21 Identities=38% Similarity=0.400 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHH
Q psy4094 459 YKILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLl 479 (663)
..|+|+|..|+|||||++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999887
No 417
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.67 E-value=0.43 Score=48.10 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 418
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.61 E-value=0.42 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.61 E-value=0.55 Score=44.57 Aligned_cols=22 Identities=23% Similarity=0.697 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
+.|+|.|..|+||||+++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998875
No 420
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.31 E-value=0.4 Score=47.28 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+|||||++.+..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998865
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.26 E-value=0.52 Score=42.79 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|.|..|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 422
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.24 E-value=0.43 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|+.|+|||||++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998876
No 423
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.22 E-value=0.46 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|.|++|+|||+|++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998875
No 424
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=85.18 E-value=0.44 Score=51.15 Aligned_cols=21 Identities=19% Similarity=0.711 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.++|+|++|+|||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 689999999999999988876
No 425
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.04 E-value=0.54 Score=46.10 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.0
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg 480 (663)
..+.|+|.|..|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998865
No 426
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=85.04 E-value=0.3 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5899999999999999988864
No 427
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.00 E-value=0.46 Score=50.47 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
--|+|+|..|+|||||+..+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4799999999999999998874
No 428
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.98 E-value=0.48 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|+|.+|+||||+++.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998764
No 429
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.76 E-value=0.48 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-.|+|.|++|+|||+|++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 37999999999999999998763
No 430
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.73 E-value=0.52 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|+|..|+|||||+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 431
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.72 E-value=0.47 Score=46.61 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998753
No 432
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=84.71 E-value=3.5 Score=41.32 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=16.3
Q ss_pred EEEEeCCCCCHHHHHHHHHhC
Q psy4094 461 ILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLlg~ 481 (663)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 444455999999999998753
No 433
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.70 E-value=0.41 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|..|+|||||++.+++.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999975
No 434
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.60 E-value=0.5 Score=49.94 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|..|+|||||++.+++
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999876
No 435
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.37 E-value=0.49 Score=51.71 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|..|+|||||++.+++
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999998876
No 436
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.25 E-value=0.76 Score=46.34 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.6
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg 480 (663)
.+.|+|.|..|+||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998863
No 437
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.99 E-value=0.56 Score=46.68 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|.|..|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999998753
No 438
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.83 E-value=0.29 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|+|++|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999988864
No 439
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.83 E-value=0.56 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|.|..|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 440
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=83.77 E-value=4.1 Score=42.07 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=47.5
Q ss_pred EEEEEEeCCCccchhhhHHHHHhcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCCC
Q psy4094 508 IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV-LLANKCDQPKEGIA 586 (663)
Q Consensus 508 vkLqIwDTpGQErfrsl~~~~~r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPII-LVGNKsDL~der~~ 586 (663)
+.+.++|+++......+ ...+..||.+|++.... ..++..+...+..+... ....++++. +|+|.++.
T Consensus 164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~---~~~~~~~l~GiI~n~~~~------ 232 (314)
T 3fwy_A 164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK---SKNYKVRLAGCVANRSRA------ 232 (314)
T ss_dssp CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT---TTTCCCEEEEEEEESCSC------
T ss_pred CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHH---hccCCCceEEEEEcCCCc------
Confidence 45778888765433322 12356689998888543 45566666666655532 122345543 67787653
Q ss_pred CCHHHHHHHHHHcCC
Q psy4094 587 NNPAKIDEFIKEHNF 601 (663)
Q Consensus 587 Vs~eei~qlak~~g~ 601 (663)
..++.++++.++.
T Consensus 233 --~~~v~~~a~~~~~ 245 (314)
T 3fwy_A 233 --TDEVDRFCKETNF 245 (314)
T ss_dssp --CHHHHHHHHHHTC
T ss_pred --hhHHHHHHHHhCC
Confidence 2455677777764
No 441
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.58 E-value=0.61 Score=50.61 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
+++|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 8999999999999999998875
No 442
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.42 E-value=0.6 Score=46.47 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
..|+|+|.+|+||||+++++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 443
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.37 E-value=0.6 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998763
No 444
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.36 E-value=0.61 Score=45.89 Aligned_cols=21 Identities=48% Similarity=0.789 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 445
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.35 E-value=0.58 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999998875
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.26 E-value=0.91 Score=44.47 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg 480 (663)
..-|+|.|.+|+||||+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 447
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.11 E-value=1.1 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
--|+|.|++|+|||.|++.+.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999998763
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.10 E-value=0.73 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.9
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg 480 (663)
....|+|+|..|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988864
No 449
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.05 E-value=0.66 Score=45.80 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|+|++|+||+|++.++..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366789999999999988864
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.05 E-value=0.63 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998874
No 451
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.93 E-value=2.2 Score=46.21 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|.|++|+|||.|++.+.+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHH
Confidence 599999999999999999876
No 452
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.62 E-value=2.2 Score=46.39 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
-|+|.|++|+|||+|++.+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999876
No 453
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.55 E-value=0.61 Score=46.82 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|+|.+|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 454
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.48 E-value=0.65 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|+|+.|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998863
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.42 E-value=0.67 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|.|++|+|||+|++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 6999999999999999988763
No 456
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.18 E-value=1.4 Score=48.30 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
--|+|.|++|+|||.|++.+.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 36999999999999999998763
No 457
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.94 E-value=0.72 Score=45.69 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|+|++|+|||+|++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998875
No 458
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.93 E-value=0.68 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhCC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQF 482 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~~ 482 (663)
.|+|+|..|+|||||++.+++-.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999988643
No 459
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=81.55 E-value=0.72 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 7999999999999999888763
No 460
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=81.50 E-value=0.66 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 461
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=81.48 E-value=0.85 Score=41.82 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=17.1
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy4094 461 ILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLl 479 (663)
.+|+|+.|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999865
No 462
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.39 E-value=0.83 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|.|++|+|||+|++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678889999999999998875
No 463
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.33 E-value=1.1 Score=44.06 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg 480 (663)
...|+|.|++|+|||+|++.+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999998876
No 464
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=81.13 E-value=0.77 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999998874
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.06 E-value=0.7 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-++|||++|+|||||++.+.+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999988864
No 466
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.90 E-value=0.85 Score=46.43 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 467
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.86 E-value=0.83 Score=47.75 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-+.|+|++|+|||||+..+++.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 468
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=80.84 E-value=0.8 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988763
No 469
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.46 E-value=0.93 Score=43.02 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=18.3
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLl 479 (663)
-++|.|.+|+|||+|+.+|+
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999876
No 470
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.44 E-value=0.91 Score=46.17 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998875
No 471
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.22 E-value=1 Score=41.68 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|..|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 472
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.21 E-value=1.2 Score=42.83 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.5
Q ss_pred ceeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 457 FLYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 457 ~~~KIVVLGd~GVGKTSLInrLlg 480 (663)
..+.|+|.|..|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998865
No 473
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.73 E-value=1.1 Score=44.89 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.4
Q ss_pred eeEEEEEeCCCCCHHHHHHHHHh
Q psy4094 458 LYKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 458 ~~KIVVLGd~GVGKTSLInrLlg 480 (663)
.+.|+|+|.+|+|||||++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998863
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.69 E-value=0.91 Score=49.75 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=0.0
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy4094 461 ILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLl 479 (663)
++|+|++|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=79.66 E-value=0.9 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6999999999999999988863
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.49 E-value=1 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|..|+|||||++.+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999998874
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.21 E-value=0.51 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998875
No 478
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=79.15 E-value=0.85 Score=46.15 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEE--eCCCCCHHHHHHHHHhC
Q psy4094 460 KILVI--GELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVL--Gd~GVGKTSLInrLlg~ 481 (663)
||+|+ |.+++|||.|++++.+-
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred ceEEEecCcccccHHHHHHHHhcc
Confidence 67777 89999999999999875
No 479
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.08 E-value=1.1 Score=43.83 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
..|+|.|++|+|||+|++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 36999999999999999888764
No 480
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=78.80 E-value=1.1 Score=46.45 Aligned_cols=86 Identities=12% Similarity=0.075 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccchhh-hH------HHHH-----hcCcEEEEEEeCCCcccHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q psy4094 508 IRLQLWDIAGQERFGN-MT------RVYY-----KEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575 (663)
Q Consensus 508 vkLqIwDTpGQErfrs-l~------~~~~-----r~ADgaILVyDVTd~~SFe~L~~wieeL~~~~~~~~~~~IPIILVG 575 (663)
+.+.|+|++|...... ++ ...+ ..++.+++|.|.+.. .+.+. ....+...+ + ..-+|.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~~------~-i~gvVl 256 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEAV------N-VTGIIL 256 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHHS------C-CCEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhcC------C-CCEEEE
Confidence 4588999999632211 11 1111 237889999998733 22222 223333221 1 235778
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeC
Q psy4094 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSA 609 (663)
Q Consensus 576 NKsDL~der~~Vs~eei~qlak~~g~i~ffEtSA 609 (663)
||.|.... .-.+..++...+. ++.++..
T Consensus 257 Tk~D~~~~-----gG~~l~~~~~~~~-Pi~~i~~ 284 (306)
T 1vma_A 257 TKLDGTAK-----GGITLAIARELGI-PIKFIGV 284 (306)
T ss_dssp ECGGGCSC-----TTHHHHHHHHHCC-CEEEEEC
T ss_pred eCCCCccc-----hHHHHHHHHHHCC-CEEEEeC
Confidence 99996432 2347778888885 6776654
No 481
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=78.76 E-value=0.74 Score=51.34 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999888763
No 482
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=78.73 E-value=1.1 Score=45.47 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|.|++|+|||+|++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3799999999999999998875
No 483
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.58 E-value=1.5 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|.|++|+|||.|++.+.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 7999999999999999998763
No 484
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=78.42 E-value=1.1 Score=47.91 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|+|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 485
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=78.36 E-value=0.96 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|+|.+|+|||||++++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 486
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.31 E-value=1.1 Score=48.67 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.++|+|++|||||+|++.+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998875
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=78.28 E-value=1 Score=50.86 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|++|+|||||++.+.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6999999999999999988764
No 488
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=78.15 E-value=0.99 Score=50.25 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|.+|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988864
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=78.01 E-value=1.2 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.++|+|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998874
No 490
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=77.74 E-value=1.2 Score=46.88 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=17.2
Q ss_pred EEEEeCCCCCHHHHHHHHH
Q psy4094 461 ILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 461 IVVLGd~GVGKTSLInrLl 479 (663)
++|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 491
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.70 E-value=0.9 Score=45.28 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.|+|.|++|+|||+|++.+..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 492
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.35 E-value=1.2 Score=46.02 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
..|+|+|++|+|||+|++.+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988753
No 493
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=77.33 E-value=0.9 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.702 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHh
Q psy4094 460 KILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg 480 (663)
.++|+|+.|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 799999999999999988876
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.16 E-value=1.6 Score=42.24 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
.-|+|.|..|+||||+++.+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 495
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.02 E-value=1.3 Score=46.13 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
.|+|.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999988763
No 496
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=76.94 E-value=1.3 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHhC
Q psy4094 460 KILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLlg~ 481 (663)
-|+|.|.+|+|||||+..+...
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEcCCCCCHHHHHHHHHhc
Confidence 5889999999999999998753
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.55 E-value=1.3 Score=45.96 Aligned_cols=23 Identities=43% Similarity=0.453 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHhC
Q psy4094 459 YKILVIGELGAGKTSIIKRYVHQ 481 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg~ 481 (663)
..|+|.|++|+|||+|++.+...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 498
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=76.48 E-value=1.3 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
--|+|+|.+|+|||||+..+..
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999885
No 499
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=76.38 E-value=1.5 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHh
Q psy4094 459 YKILVIGELGAGKTSIIKRYVH 480 (663)
Q Consensus 459 ~KIVVLGd~GVGKTSLInrLlg 480 (663)
-.|+|.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988765
No 500
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=76.27 E-value=1.5 Score=42.13 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCHHHHHHHHH
Q psy4094 460 KILVIGELGAGKTSIIKRYV 479 (663)
Q Consensus 460 KIVVLGd~GVGKTSLInrLl 479 (663)
-.+|+|+.|+|||||+..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999998764
Done!