RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4094
(663 letters)
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 224 bits (574), Expect = 5e-70
Identities = 57/181 (31%), Positives = 101/181 (55%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M +++ + K++++G+ G GKTS++ RYV+ +S Y+ATIG DF K ++ D + + +
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++ +Y+ A +V+DVT A++F+ + W+ + + P
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
V+L NK D + + E K F TSAK+ IN+D A + + + L+ +
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180
Query: 631 K 631
+
Sbjct: 181 Q 181
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 216 bits (552), Expect = 2e-66
Identities = 66/213 (30%), Positives = 115/213 (53%), Gaps = 6/213 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M +++ L K++++G+ G GKTS++ +YV++ FS Y+ATIG DF K + D + +
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLV-TM 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++ +Y+ A +VFDVT TF + W+ + + + D P
Sbjct: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
V+L NK D +A A+ + N +FETSAK+ IN++ A +T+ + L+
Sbjct: 120 FVVLGNKIDLENRQVATKRAQ--AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ- 176
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
+ + + L++N + + +C+C
Sbjct: 177 --ETEVELYNEFPEPIKLDKNERAKASAESCSC 207
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 187 bits (477), Expect = 4e-56
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 4/179 (2%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M K L+K++++G+ G GK+S++ RYV F TIGV+F K L D + +
Sbjct: 1 MAGKS-SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV-TM 58
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++ +Y+ + + F V + +F + WK++ + + P
Sbjct: 59 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
V+L NK D + ++ A+ + +++ +FETSAKD N+ A + V+++L
Sbjct: 119 FVILGNKIDISERQVSTEEAQ--AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 180 bits (460), Expect = 3e-53
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + ++L+K+L+IG G GK+ ++ R+ ++ Y +TIGVDF +K + D +T+ +L
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ + G IV+DVT +F+ V W Q++D +
Sbjct: 60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID---RYATST-VL 115
Query: 571 CVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
+L+ NKCD + + + AK EF + + ETSA D+ N++DA T+ ++I E+
Sbjct: 116 KLLVGNKCDLKDKRVVEYDVAK--EFADANKMP-FLETSALDSTNVEDAFLTMARQIKES 172
Query: 630 DKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
Q ++ E ++N Q N C C
Sbjct: 173 MSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 178 bits (454), Expect = 9e-53
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 17/181 (9%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
KI+V+G+ +GKTS+ + + F Y+ TIG+DF L+ ++ + LQ+WDI
Sbjct: 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
GQ G M Y A G +V+D+T +F+ + W + + P+ L+
Sbjct: 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL-VALVG 122
Query: 576 NKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NK D +P++ F +E+ FS SAK ++ + + +IL
Sbjct: 123 NKIDLEHMRTIKPEKH--------LRFCQENGFS-SHFVSAKTGDSVFLCFQKVAAEILG 173
Query: 629 N 629
Sbjct: 174 I 174
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 176 bits (449), Expect = 6e-52
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 7/193 (3%)
Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
S S M + KIL+IGE G GK+S++ R+ F P ATIGVDF +K +S D
Sbjct: 3 SGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN 62
Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
+L +WD AGQERF +T YY+ A G +V+DVTR TF + W +L+ T
Sbjct: 63 KA-KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE---TYCT 118
Query: 566 GNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
N I +L+ NK D+ + N +F ++H+ + E SAK + A + LV+K
Sbjct: 119 RNDIVNMLVGNKIDKENREVDRNEGL--KFARKHSML-FIEASAKTCDGVQCAFEELVEK 175
Query: 626 ILENDKVQANGDS 638
I++ + + +
Sbjct: 176 IIQTPGLWESENQ 188
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 174 bits (445), Expect = 2e-51
Identities = 58/174 (33%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
E K++V+G GK+S+I+RY F+ Y+ TIGVDF + + + E + RL LWD
Sbjct: 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDV-RLMLWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQE F +T+ YY+ A +VF T +F+A+ W++ + A+ IP L+
Sbjct: 62 AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE-----VGDIPTALVQ 116
Query: 576 NKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NK D + I N A+ K ++ TS K+++N+ + K L +K L+
Sbjct: 117 NKIDLLDDSCIKNEEAE--GLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 167
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 171 bits (437), Expect = 2e-50
Identities = 56/180 (31%), Positives = 101/180 (56%), Gaps = 10/180 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
+ + KIL+IG+ G GK+ ++ R+V F+P + TIG+DF +K + + + + +LQ+WD
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV-KLQIWDT 59
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQERF +T YY+ A+G +V+D+T TF + +W + ++ + +L+
Sbjct: 60 AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVN---EHANDE-AQLLLVG 115
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQAN 635
NK D + + + KE + E+SAK++ N+++ TL + I E K+ +N
Sbjct: 116 NKSDMETRVVTADQGE--ALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE--KIDSN 170
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 172 bits (438), Expect = 3e-50
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 9/192 (4%)
Query: 439 NGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
+ P S M + ++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++
Sbjct: 14 ENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR 73
Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD 558
+ D +TI +LQ+WD AGQERF +T YY+ A G +V+DVT +F+ V +W Q++D
Sbjct: 74 TIELDGKTI-KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 132
Query: 559 AKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617
N + +L+ NKCD + + AK EF + ETSAK+ N++
Sbjct: 133 ---RYASEN-VNKLLVGNKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQ 185
Query: 618 AAKTLVQKILEN 629
+ T+ +I +
Sbjct: 186 SFMTMAAEIKKR 197
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 171 bits (436), Expect = 6e-50
Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 12/202 (5%)
Query: 433 GKTSITNGSSKEVSPYSKMPDKR-EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATI 491
G + + S + P + YKI++ G+ GK+S + R F + AT+
Sbjct: 2 GSSHHHHHHSSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL 61
Query: 492 GVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL 551
GVDF +K L D E LQLWD AGQERF ++ + Y+++A G +++DVT +F +
Sbjct: 62 GVDFQMKTLIVDGERT-VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120
Query: 552 KWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKID-----EFIKEHNFSGWFE 606
+W ++ +P +L+ NK D + + + + E
Sbjct: 121 EWVDMIEDAA----HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCE 175
Query: 607 TSAKDNINIDDAAKTLVQKILE 628
TSAKD NI +A L +++ +
Sbjct: 176 TSAKDGSNIVEAVLHLAREVKK 197
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 169 bits (431), Expect = 2e-49
Identities = 58/182 (31%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
+ P +++K ++IG++G GK+ ++ ++ + F TIGV+F +++ + I
Sbjct: 6 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI- 64
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
+LQ+WD AGQERF +TR YY+ A GA +V+D+TR +T++ + W D L + N
Sbjct: 65 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPN- 120
Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
+L+ NK D + + AK +F +E+ + E SAK N++DA +KI
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAK--QFAEENGLL-FLEASAKTGENVEDAFLEAAKKIY 177
Query: 628 EN 629
+N
Sbjct: 178 QN 179
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 170 bits (432), Expect = 3e-49
Identities = 61/193 (31%), Positives = 109/193 (56%), Gaps = 9/193 (4%)
Query: 438 TNGSSKEVSPYSKMPDKR-EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA 496
+ SS V S PD++ +FL+K++++G+ GKT +++R+ FS +TIGVDF
Sbjct: 8 HHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFT 67
Query: 497 LKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD 556
+K L + + +LQ+WD AGQERF +T+ YY+ A GA + +D+T+ ++F +V W +D
Sbjct: 68 MKTLEIQGKRV-KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED 126
Query: 557 LDAKVTLPDGNPIPCVLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINI 615
+ N I +L+ NK D ++ A+ + ++ ETSAKD+ N+
Sbjct: 127 VR---KYAGSN-IVQLLIGNKSDLSELREVSLAEAQ--SLAEHYDILCAIETSAKDSSNV 180
Query: 616 DDAAKTLVQKILE 628
++A + +++
Sbjct: 181 EEAFLRVATELIM 193
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 170 bits (432), Expect = 4e-49
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 8/217 (3%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
+ VS S + + KIL+IG+ G GK+ ++ R+V F+P + TIG+DF +K +
Sbjct: 3 GLRTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV 62
Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
+ + + +LQLWD AGQERF +T YY+ A+G +V+DVT TF + +W + ++
Sbjct: 63 DINGKKV-KLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVN-- 119
Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
+ +L+ NK D + + + KE + E+SAK++ N+++
Sbjct: 120 -EHANDE-AQLLLVGNKSDMETRVVTADQGE--ALAKELGIP-FIESSAKNDDNVNEIFF 174
Query: 621 TLVQKILENDKVQANGDSHATSEAVFSLNRNSQETKN 657
TL + I E E S+N S +
Sbjct: 175 TLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSK 211
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 168 bits (428), Expect = 5e-49
Identities = 59/180 (32%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + L+K+L+IG+ G GK+S++ R+ FS Y TIGVDF ++ + + E + +L
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV-KL 60
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ G +V+DVT A +F V +W +++ + +
Sbjct: 61 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-----CDDVC 115
Query: 571 CVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
+L+ NK D P+ + A +F + FETSAK+N+N+++ + + +L
Sbjct: 116 RILVGNKNDDPERKVVETEDAY--KFAGQMGIQ-LFETSAKENVNVEEMFNCITELVLRA 172
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 168 bits (428), Expect = 5e-49
Identities = 57/189 (30%), Positives = 105/189 (55%), Gaps = 9/189 (4%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M ++L+K+L+IG+ G GKT ++ R+ F+ + +TIG+DF ++ + D + I +L
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI-KL 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF +T YY+ A+G +V+D+T +FD + W ++++ + +
Sbjct: 60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE---EHASAD-VE 115
Query: 571 CVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
++L NKCD + ++ + + ++ + ETSAK NIN+++A TL + I
Sbjct: 116 KMILGNKCDVNDKRQVSKERGE--KLALDYGIK-FMETSAKANINVENAFFTLARDIKAK 172
Query: 630 DKVQANGDS 638
+
Sbjct: 173 MDKNWKATA 181
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 168 bits (427), Expect = 7e-49
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 9/180 (5%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M + +FL+K LVIG G GK+ ++ +++ + F TIGV+F K+++ + + +L
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYV-KL 61
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
Q+WD AGQERF ++TR YY+ A GA +V+D+T T++A+ W D L N I
Sbjct: 62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR---MLASQN-IV 117
Query: 571 CVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
+L NK D + + A F +E+ + ETSA N+++A +KIL
Sbjct: 118 IILCGNKKDLDADREVTFLEAS--RFAQENELM-FLETSALTGENVEEAFVQCARKILNK 174
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 169 bits (430), Expect = 9e-49
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 10/185 (5%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
S + + +K++++G+ G GKT+ +KR++ F Y AT+GV+ V + I
Sbjct: 6 SAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI- 64
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
+ +WD AGQE+FG + YY +A A I+FDVT T+ V W +DL
Sbjct: 65 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-----VCEN 119
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
IP VL NK D + AK F ++ N +++ SAK N N + L +K++
Sbjct: 120 IPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIG 175
Query: 629 NDKVQ 633
+ ++
Sbjct: 176 DPNLE 180
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 168 bits (427), Expect = 1e-48
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
S M + ++L+K+L+IG+ G GK+ ++ R+ ++ Y +TIGVDF ++ + D +
Sbjct: 4 GSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK 63
Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
TI +LQ+WD AGQERF +T YY+ A G +V+DVT +F+ V +W Q++D
Sbjct: 64 TI-KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID---RYAS 119
Query: 566 GNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
N + +L+ NKCD + + AK EF + ETSAK+ N++ + T+
Sbjct: 120 EN-VNKLLVGNKCDLTTKKVVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSFMTMAA 175
Query: 625 KILEN 629
+I +
Sbjct: 176 EIKKR 180
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 167 bits (426), Expect = 1e-48
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 17/190 (8%)
Query: 451 MPDKR-EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-- 507
M D ++L K L +G+ G GKTS++ +Y F+ + T+G+DF K + +
Sbjct: 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62
Query: 508 -------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
I LQLWD AG ERF ++T ++++A+G ++FD+T +F V W L
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122
Query: 561 VTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
+ VL NK D + + A+ E +++ +FETSA + NI A
Sbjct: 123 AYSEN---PDIVLCGNKSDLEDQRAVKEEEAR--ELAEKYGIP-YFETSAANGTNISHAI 176
Query: 620 KTLVQKILEN 629
+ L+ I++
Sbjct: 177 EMLLDLIMKR 186
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 167 bits (425), Expect = 2e-48
Identities = 61/182 (33%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
P +F ++++IG G GKTS+++R+ F ++T+GVDF +K + + I
Sbjct: 17 RGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI- 75
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
RLQ+WD AGQERF ++T YY+ A G +V+D+T+ TFD + KW + +D +
Sbjct: 76 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID---KYASED- 131
Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
+L+ NK D + I + +F ++ + E SAKDN N+D+ LV IL
Sbjct: 132 AELLLVGNKLDCETDREITRQQGE--KFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
Query: 628 EN 629
+
Sbjct: 190 KK 191
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 167 bits (424), Expect = 2e-48
Identities = 59/185 (31%), Positives = 96/185 (51%), Gaps = 9/185 (4%)
Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
+P ++++K+L+IG GKTS + RY F+P + +T+G+DF +K + +
Sbjct: 10 HSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK 69
Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
I +LQ+WD AGQER+ +T YY+ A+G +++D+ +F AV W + T
Sbjct: 70 RI-KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK---TYSW 125
Query: 566 GNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
N +L+ NKCD E + + + F +FE SAK+NIN+ + LV
Sbjct: 126 DN-AQVILVGNKCDLEDERVVPAEDGR--RLADDLGFE-FFEASAKENINVKQVFERLVD 181
Query: 625 KILEN 629
I E
Sbjct: 182 VICEK 186
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 167 bits (424), Expect = 3e-48
Identities = 59/189 (31%), Positives = 110/189 (58%), Gaps = 9/189 (4%)
Query: 439 NGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
+G D+ ++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA +
Sbjct: 10 HGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATR 69
Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD 558
+ D +TI + Q+WD AG ER+ +T YY+ AVGA +V+D+ + T++ V +W ++L
Sbjct: 70 SIQVDGKTI-KAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128
Query: 559 AKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617
D N I +L+ NK D + + A+ F +++ S + ETSA D+ N++
Sbjct: 129 ---DHADSN-IVIMLVGNKSDLRHLRAVPTDEAR--AFAEKNGLS-FIETSALDSTNVEA 181
Query: 618 AAKTLVQKI 626
A +T++ +I
Sbjct: 182 AFQTILTEI 190
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 167 bits (425), Expect = 3e-48
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 10/206 (4%)
Query: 440 GSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQF--FSPHYRATIGVDFAL 497
+S + K+ V+GE GK+++I + + F Y T GV+ +
Sbjct: 2 AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV 61
Query: 498 KVLSWDHETIIRLQLW--DIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQ 555
++ T+ ++L+ D AG + + Y+ A +VFDV+ +F++ W +
Sbjct: 62 APVTIPDTTV-SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFE 120
Query: 556 DLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAK-DNIN 614
L + + + VL+ANK D P + ++ + +F+ SA +
Sbjct: 121 LLKSARPDRERP-LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANPPGKD 178
Query: 615 IDDAAKTLVQKILEN--DKVQANGDS 638
D ++ N DKV A D+
Sbjct: 179 ADAPFLSIATTFYRNYEDKVAAFQDA 204
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 167 bits (424), Expect = 5e-48
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 17/198 (8%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
++L K+L +G+ G GKT+ + RY F+P + T+G+DF K + ++ +
Sbjct: 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 508 -IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
+ LQLWD AGQERF ++T ++++A+G ++FD+T +F V W L A +
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN- 141
Query: 567 NPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
VL+ NK D P + + A+ E ++ +FETSA N++ A +TL+
Sbjct: 142 --PDIVLIGNKADLPDQREVNERQAR--ELADKYGIP-YFETSAATGQNVEKAVETLLDL 196
Query: 626 ILEN-DKVQANGDSHATS 642
I++ ++ T
Sbjct: 197 IMKRMEQCVEKTQIPDTV 214
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 165 bits (421), Expect = 7e-48
Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 441 SSKEVSPYSKMPDK-REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKV 499
S +P R ++KI+VIG+ GKT + R+ F ATIGVDF +
Sbjct: 2 GHHHHHHGSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERA 61
Query: 500 LSWDHETIIRLQLWDIAGQERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD 558
+ D E I++QLWD AGQERF +M + YY+ V+D+T A+F ++ W ++
Sbjct: 62 VDIDGER-IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK 120
Query: 559 AKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAK---DNIN 614
N IP +L+ NKCD + + A+ +F H+ FETSAK DN +
Sbjct: 121 ---QHLLANDIPRILVGNKCDLRSAIQVPTDLAQ--KFADTHSMP-LFETSAKNPNDNDH 174
Query: 615 IDDAAKTLVQKILEN 629
++ TL K+ +
Sbjct: 175 VEAIFMTLAHKLKSH 189
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 165 bits (421), Expect = 7e-48
Identities = 58/190 (30%), Positives = 101/190 (53%), Gaps = 9/190 (4%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
S S + + +L+K ++IG+ G GK+ ++ ++ + F P + TIGV+F +++
Sbjct: 4 SHHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV 63
Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
+ D + I +LQ+WD AGQE F ++TR YY+ A GA +V+D+TR TF+ + W +D
Sbjct: 64 NIDGKQI-KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-- 120
Query: 561 VTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
N + +L+ NK D + + F +EH + ETSAK N+++A
Sbjct: 121 -QHSSSN-MVIMLIGNKSDLESRRDVKREEGE--AFAREHGLI-FMETSAKTACNVEEAF 175
Query: 620 KTLVQKILEN 629
++I
Sbjct: 176 INTAKEIYRK 185
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 165 bits (420), Expect = 1e-47
Identities = 57/182 (31%), Positives = 99/182 (54%), Gaps = 9/182 (4%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
++++K+L+IG GKTS + RY F+P + +T+G+DF +K + + +
Sbjct: 14 LYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV- 72
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
+LQ+WD AGQER+ +T YY+ A+G +++D+T +F+AV W + T N
Sbjct: 73 KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK---TYSWDN- 128
Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
+L+ NKCD +E + + ++ F +FE SAK+NI++ A + LV I
Sbjct: 129 AQVILVGNKCDMEEERVVPTEKGQ--LLAEQLGFD-FFEASAKENISVRQAFERLVDAIC 185
Query: 628 EN 629
+
Sbjct: 186 DK 187
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 164 bits (417), Expect = 1e-47
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
Query: 455 REFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
R + +K++++GE GKTS++ RY F+ + T+G F K L+ + + L +WD
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRV-NLAIWD 61
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
AGQERF + +YY+++ GA +V+D+T +F V W ++L + I ++
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR---KMLGNE-ICLCIV 117
Query: 575 ANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
NK D KE ++ A+ + + + TSAK N I++ L ++++E
Sbjct: 118 GNKIDLEKERHVSIQEAE--SYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 169
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 165 bits (420), Expect = 2e-47
Identities = 57/211 (27%), Positives = 98/211 (46%), Gaps = 12/211 (5%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + T+ RLQ
Sbjct: 10 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-RLQ 68
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
LWD AG ERF ++ Y +++ A +V+D+T +F KW D+ + G+ +
Sbjct: 69 LWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVII 124
Query: 572 VLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
+L+ NK D K ++ + KE N + ETSAK N+ + + + +
Sbjct: 125 MLVGNKTDLADKRQVSIEEGE--RKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGME 181
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKNGRNC 661
Q L + ++ + C
Sbjct: 182 STQDRSREDMID---IKLEKPQEQPVSEGGC 209
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 164 bits (418), Expect = 2e-47
Identities = 66/193 (34%), Positives = 101/193 (52%), Gaps = 12/193 (6%)
Query: 438 TNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFAL 497
+ SS V S D FL+K LVIG G GK+ ++ +++ F TIGV+F
Sbjct: 8 HHHSSGLVPRGSIWSD---FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGS 64
Query: 498 KVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL 557
+V++ +T+ +LQ+WD AGQERF ++TR YY+ A GA +V+D+T T++++ W D
Sbjct: 65 RVVNVGGKTV-KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA 123
Query: 558 DAKVTLPDGNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616
TL N I +L NK D E + A F +E+ + ETSA N++
Sbjct: 124 R---TLASPN-IVVILCGNKKDLDPEREVTFLEAS--RFAQENELM-FLETSALTGENVE 176
Query: 617 DAAKTLVQKILEN 629
+A + IL
Sbjct: 177 EAFLKCARTILNK 189
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 164 bits (418), Expect = 3e-47
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGV-DFALKVLSWDHETIIRLQ 511
++RE YKI +IG+ G GKT+ I R + F +Y AT+G + + L I +
Sbjct: 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVI-KFN 64
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
+WD AGQE+ + VYY A GA + FDVT T + +W ++ V + P
Sbjct: 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ-AVVGNE---API 120
Query: 572 VLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
V+ ANK D ++ I+ E +K N+ +FE SAK N L +
Sbjct: 121 VVCANKIDIKNRQKISKKLVM--EVLKGKNYE-YFEISAKTAHNFGLPFLHLARIFTGRP 177
Query: 631 KVQANGDSHATSEAVFSLNRNSQETKN 657
+ + + V + +E+K
Sbjct: 178 DLIFVSNVNLEPTEVNYDYHSPEESKY 204
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 163 bits (416), Expect = 5e-47
Identities = 62/190 (32%), Positives = 113/190 (59%), Gaps = 9/190 (4%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++L+K+++IG+ G GK++++ R+ F+ ++TIGV+FA + + D +TI + Q+WD
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-KAQIWDT 61
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQER+ +T YY+ AVGA +V+D+ + T++ V +W ++L D N I +L+
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR---DHADSN-IVIMLVG 117
Query: 576 NKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQA 634
NK D + + A+ F +++N S + ETSA D+ N+++A K ++ +I +
Sbjct: 118 NKSDLRHLRAVPTDEAR--AFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174
Query: 635 NGDSHATSEA 644
D A E+
Sbjct: 175 IADRAAHDES 184
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 163 bits (415), Expect = 5e-47
Identities = 56/185 (30%), Positives = 101/185 (54%), Gaps = 9/185 (4%)
Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
+ + F++K+++IGE G GKT+++ R+ FS R TIGV+F+ + +
Sbjct: 13 GLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA 72
Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
+ + Q+WD AG ER+ +T YY+ AVGA +VFD+T+ T+ V +W ++L +
Sbjct: 73 AV-KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELY---DHAE 128
Query: 566 GNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
I +L+ NK D + + A+ F + + + ETSA D+ N++ A +T+++
Sbjct: 129 AT-IVVMLVGNKSDLSQAREVPTEEAR--MFAENNGLL-FLETSALDSTNVELAFETVLK 184
Query: 625 KILEN 629
+I
Sbjct: 185 EIFAK 189
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 162 bits (413), Expect = 7e-47
Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
S +K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + T+
Sbjct: 5 SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV- 63
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
RLQLWD AGQERF ++ Y +++ A +V+D+T +F KW D+ + G+
Sbjct: 64 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER----GSD 119
Query: 569 IPCVLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
+ +L+ NK D K ++ + KE N + ETSAK N+ + + +
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGE--RKAKELNVM-FIETSAKAGYNVKQLFRRVAAALP 176
Query: 628 END 630
D
Sbjct: 177 GMD 179
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 163 bits (414), Expect = 8e-47
Identities = 60/198 (30%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
Query: 433 GKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIG 492
G + + S + P M D +FL+KI++IG G GKT +++R+ F P ATIG
Sbjct: 2 GSSHHHHHHSSGLVPRGSMEDY-DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 60
Query: 493 VDFALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK 552
VDF +K + + E + +LQ+WD AGQERF ++T+ YY+ A + +D+T +F + +
Sbjct: 61 VDFMIKTVEINGEKV-KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE 119
Query: 553 WKQDLDAKVTLPDGNPIPCVLLANKCDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKD 611
W ++++ + VL+ NK D + ++ A+ EF + + + ETSAK+
Sbjct: 120 WLREIE---QYASNK-VITVLVGNKIDLAERREVSQQRAE--EFSEAQDMY-YLETSAKE 172
Query: 612 NINIDDAAKTLVQKILEN 629
+ N++ L +++
Sbjct: 173 SDNVEKLFLDLACRLISE 190
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 161 bits (411), Expect = 1e-46
Identities = 54/182 (29%), Positives = 97/182 (53%), Gaps = 10/182 (5%)
Query: 450 KMPDKREFLYKILVIGELGAGKTSIIKRYV-HQFFSPHYRATIGVDFALKVLSWDHETII 508
D + +K++++G+ G GKT ++ R+ F + + +T+G+DF KVL D +
Sbjct: 2 SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKV- 60
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
+LQ+WD AGQERF ++T YY++A +++DVT A+FD + W ++ +
Sbjct: 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH---EYAQHD- 116
Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
+ +LL NK D E + + + KE+ + ETSAK +N+D A + +++
Sbjct: 117 VALMLLGNKVDSAHERVVKREDGE--KLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELK 173
Query: 628 EN 629
Sbjct: 174 RR 175
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 162 bits (412), Expect = 2e-46
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 9/175 (5%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
++++KIL+IG GKTS + RY F+P + +T+G+DF +K + + + I +LQ+WD
Sbjct: 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRI-KLQIWDT 64
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AG ER+ +T YY+ A+G +++D+T +F+AV W + T N +L+
Sbjct: 65 AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK---TYSWDN-AQVLLVG 120
Query: 576 NKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
NKCD E +++ + + F +FE SAKDNIN+ + LV I E
Sbjct: 121 NKCDMEDERVVSSERGR--QLADHLGFE-FFEASAKDNINVKQTFERLVDVICEK 172
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 161 bits (409), Expect = 3e-46
Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
+ K++++G++GAGK+S++ R+V F +TIG F + L+ + T+ + +
Sbjct: 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV-KFE 64
Query: 512 LWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPC 571
+WD AGQER+ ++ +YY+ A A IVFDVT A+F+ KW Q+L A+ +
Sbjct: 65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG----NPNMVM 120
Query: 572 VLLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEND 630
L NK D + A+ + +E+ + ETSAK N+ + + +++
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQ--TYAQENGLF-FMETSAKTATNVKEIFYEIARRLPRVQ 177
Query: 631 KVQ 633
+
Sbjct: 178 PTE 180
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 159 bits (405), Expect = 6e-46
Identities = 46/172 (26%), Positives = 91/172 (52%), Gaps = 9/172 (5%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+K++++GE GK+S++ R+V F +TIG F + + D T+ + ++WD AGQ
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTV-KFEIWDTAGQ 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ER+ ++ +YY+ A A +V+D+T +F W ++L + I L NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIALSGNKA 121
Query: 579 DQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + +++ + ETSAK ++N+++ + +K+ +N
Sbjct: 122 DLANKRAVDFQEAQ--SYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPKN 170
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 161 bits (409), Expect = 7e-46
Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDI 515
+ L+KI++IG+ G GK++++ R+ F+ ++TIGV+FA + L + + I + Q+WD
Sbjct: 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-KAQIWDT 69
Query: 516 AGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
AGQER+ +T YY+ AVGA IV+D++++++++ W +L D N + L+
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR---ENADDN-VAVGLIG 125
Query: 576 NKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQA 634
NK D + +K F +E+ + ETSA ++ N+D A + L+ I +
Sbjct: 126 NKSDLAHLRAVPTEESK--TFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVSKHQ 182
Query: 635 -----------NGDSHATSEAVFSLNRNSQETKNGRNCAC 663
+ A + SL E K C
Sbjct: 183 MDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNC 222
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 157 bits (399), Expect = 4e-45
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
K+ ++G+ G GK+SI+ R+V F P+ TIG F K + + +E + +WD AG
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGL 65
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLLANK 577
ERF + +YY+ + A IV+D+T+ TF + W ++L G P I + NK
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-----GPPSIVVAIAGNK 120
Query: 578 CDQP-KEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
CD + AK ++ + + ETSAK+ INI++ + ++I
Sbjct: 121 CDLTDVREVMERDAK--DYADSIHAI-FVETSAKNAININELFIEISRRIPS 169
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 157 bits (399), Expect = 9e-45
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
K+ ++G+ G GK+SI+ R+V F + TIG F K + +E + +
Sbjct: 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLI 76
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCV 572
WD AGQERF ++ +YY+ + A IV+D+T+ +F + KW ++L I
Sbjct: 77 WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG----PENIVMA 132
Query: 573 LLANKCD-QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDK 631
+ NKCD + AK E+ + ETSAK+ INI++ + + ++I D
Sbjct: 133 IAGNKCDLSDIREVPLKDAK--EYAESIGAI-VVETSAKNAINIEELFQGISRQIPPLDP 189
Query: 632 VQ 633
+
Sbjct: 190 HE 191
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 152 bits (385), Expect = 1e-42
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 45/210 (21%)
Query: 456 EFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI-------- 507
+ YK +++GE GK+SI+ R F + TIG F V++ + I
Sbjct: 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEK 64
Query: 508 ----------------------------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVF 539
I+ +WD AGQER+ ++ +YY+ A A +VF
Sbjct: 65 NNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVF 124
Query: 540 DVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEH 599
D++ + T D W L N +L+ANK D+ K + + ++ +++
Sbjct: 125 DISNSNTLDRAKTWVNQLKI-----SSN-YIIILVANKIDKNKFQVDILEVQ--KYAQDN 176
Query: 600 NFSGWFETSAKDNINIDDAAKTLVQKILEN 629
N + +TSAK NI + L ++I +N
Sbjct: 177 NLL-FIQTSAKTGTNIKNIFYMLAEEIYKN 205
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 150 bits (381), Expect = 3e-42
Identities = 41/200 (20%), Positives = 74/200 (37%), Gaps = 24/200 (12%)
Query: 438 TNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFAL 497
+ S +E + D ++K++++GE G GK+++ + + D
Sbjct: 6 HHSSGRENLYFQGQKD---GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYE 62
Query: 498 KVLSWDHETIIRLQLWDIAGQERFGNMTR-VYYKEAVGAFIVFDVTRAATFDAVLKWKQD 556
+ + D E + L ++DI Q G R + IVF VT +F V +
Sbjct: 63 RRIMVDKEEVT-LVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR 121
Query: 557 LDAKVTLPDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSA 609
L A + +P +L+ NK D +EG + ETSA
Sbjct: 122 LRAGR---PHHDLPVILVGNKSDLARSREVSLEEGRH--------LAGTLSCK-HIETSA 169
Query: 610 KDNINIDDAAKTLVQKILEN 629
+ N + + V++I
Sbjct: 170 ALHHNTRELFEGAVRQIRLR 189
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 148 bits (377), Expect = 5e-42
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 21/177 (11%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
++K++++GE G GK+++ + + D + + D E + L ++DI
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE-VTLIVYDIWE 60
Query: 518 QERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLAN 576
Q G + + IVF VT +F V + L A + +P +L+ N
Sbjct: 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGN 117
Query: 577 KCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
K D +EG + ETSA + N + + V++I
Sbjct: 118 KSDLARSREVSLEEGRH--------LAGTLSCK-HIETSAALHHNTRELFEGAVRQI 165
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 146 bits (371), Expect = 5e-41
Identities = 36/181 (19%), Positives = 78/181 (43%), Gaps = 16/181 (8%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSP--HYRATIGVDFALKVLSWDHETI--IRLQLWD 514
K++++G G+GKT+++++ + S AT+G+D + + + L +WD
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVT-RAATFDAVLKWKQDLDAKVTLPDGNPIPCVL 573
AG+E F + + + V+D++ A DA+ W ++ A+ + P +L
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-----ASSSPVIL 117
Query: 574 LANKCD--QPKEGIANNPAKIDEFIKEHNFSG----WFETSAKDNINIDDAAKTLVQKIL 627
+ D K+ A E + + F F + +++ + KT++ + L
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177
Query: 628 E 628
Sbjct: 178 N 178
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 145 bits (369), Expect = 6e-41
Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F TI + K + D ET + L + D AGQ
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCL-LDILDTAGQ 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + ++++ + + D + +P VL+ NK
Sbjct: 62 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLVGNKS 118
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
D + + A+ + + + + ETSAK ++DA TLV++I ++
Sbjct: 119 DLAARTVESRQAQ--DLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQH 166
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 146 bits (370), Expect = 1e-40
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 25/201 (12%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
S +E + MP R K++++G GKTS+ ++V FS Y T+ ++ K++
Sbjct: 9 SGRENLYFQGMPLVRY--RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIV 65
Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDA 559
+ + L L D AGQ+ + + + G +V+ VT +F + Q +
Sbjct: 66 TLGKDEF-HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG 124
Query: 560 KVTLPDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDN 612
+P VL+ NK D Q EG + + + E+SA++N
Sbjct: 125 H----GKTRVPVVLVGNKADLSPEREVQAVEGKK--------LAESWGAT-FMESSAREN 171
Query: 613 INIDDAAKTLVQKILENDKVQ 633
++Q+I +
Sbjct: 172 QLTQGIFTKVIQEIARVENSY 192
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 144 bits (367), Expect = 2e-40
Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
L+K++++G G GK+++ ++++ F Y T + K + D E + + + D AG
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQ-IDILDTAG 61
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
QE + + Y++ G VF +T +F A +++ + +V + +P +L+ NK
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL-RVK--EDENVPFLLVGNK 118
Query: 578 CD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D +E + N + + ETSAK N+D L+++I
Sbjct: 119 SDLEDKRQVSVEEAK--------NRADQWNVN-YVETSAKTRANVDKVFFDLMREI 165
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 145 bits (369), Expect = 2e-40
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 20/214 (9%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
MP++ Y+++V G G GK+S++ R+V F Y TI + +V+S D L
Sbjct: 2 MPEQS-NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCT-L 58
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTLPDGNPI 569
Q+ D G +F M R+ + +VF VT + + + + + K ++ D I
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---I 115
Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
P +L+ NKCD+ + + A+ +E + + ETSAK N N+ + + L+
Sbjct: 116 PVMLVGNKCDETQREVDTREAQ--AVAQEWKCA-FMETSAKMNYNVKELFQELLTLETRR 172
Query: 630 DKVQANGDSHATSEAVFSLNRNSQETKNGRNCAC 663
+ Q+ + C
Sbjct: 173 NMSLNIDGK----------RSGKQKRTDRVKGKC 196
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 145 bits (367), Expect = 2e-40
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 13/195 (6%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
S +E + M + YK++V+G G GK+++ + + F Y TI + K +
Sbjct: 9 SGRENLYFQGMTE-----YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQV 62
Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
D ET + L + D AGQE + M Y + G VF + + +F + +++ +
Sbjct: 63 VIDGETCL-LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK-- 119
Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
+ D + +P VL+ NKCD P + A E K + + ETSAK ++DA
Sbjct: 120 -RVKDSDDVPMVLVGNKCDLPTRTVDTKQAH--ELAKSYGIP-FIETSAKTRQGVEDAFY 175
Query: 621 TLVQKILENDKVQAN 635
TLV++I + + N
Sbjct: 176 TLVREIRQYRMKKLN 190
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 144 bits (364), Expect = 3e-40
Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 8/172 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
K++++GE GK+SI+ R+V F+ + TIG F + ++ + T+ + ++WD AGQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTV-KFEIWDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
ERF ++ YY+ A A +V+DVT+ +F W ++L + I L+ NK
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA----SKDIIIALVGNKI 118
Query: 579 DQPKEGIAN--NPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
D +EG + ++ +E +FETSAK N++D + +KI
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGEKIPL 169
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 144 bits (365), Expect = 4e-40
Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 25/196 (12%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
MP + KI ++G GK+S+ ++V F Y TI F K+++ + + L
Sbjct: 1 MPQSKS--RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYH-L 56
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTLPDGNPI 569
QL D AGQ+ + + Y + G +V+ VT +F+ + LD I
Sbjct: 57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV----GKVQI 112
Query: 570 PCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTL 622
P +L+ NK D +EG A + N + + E+SAK+N D + +
Sbjct: 113 PIMLVGNKKDLHMERVISYEEGKA--------LAESWNAA-FLESSAKENQTAVDVFRRI 163
Query: 623 VQKILENDKVQANGDS 638
+ + + D + G S
Sbjct: 164 ILEAEKMDGACSQGKS 179
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 143 bits (363), Expect = 8e-40
Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 445 VSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDH 504
+S L+K++++G G GK+++ ++++ F Y T + K + D
Sbjct: 5 ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 63
Query: 505 ETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTL 563
E + + + D AGQE + + Y++ G VF +T +F A +++ L K
Sbjct: 64 EEVQ-IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK--- 119
Query: 564 PDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINID 616
+ +P +L+ NK D +E ++ N + + ETSAK N+D
Sbjct: 120 -EDENVPFLLVGNKSDLEDKRQVSVEEAK--------NRAEQWNVN-YVETSAKTRANVD 169
Query: 617 DAAKTLVQKILENDK 631
L+++I
Sbjct: 170 KVFFDLMREIRARKM 184
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 142 bits (361), Expect = 2e-39
Identities = 48/217 (22%), Positives = 93/217 (42%), Gaps = 20/217 (9%)
Query: 449 SKMPDKREF--LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHET 506
+ P + L+K++++G G GK+++ ++++ F Y T + K + D E
Sbjct: 3 ANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEE 61
Query: 507 IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPD 565
+ + + D AGQE + + Y++ G VF +T +F A + +Q L K +
Sbjct: 62 VQ-IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK----E 116
Query: 566 GNPIPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
+P +L+ NK D + ++ AK ++ N + + ETSAK N+D L++
Sbjct: 117 DENVPFLLVGNKSDLEDKRQVSVEEAK--NRAEQWNVN-YVETSAKTRANVDKVFFDLMR 173
Query: 625 KILENDKVQANGDSHATSEAVFSLNRNSQETKNGRNC 661
+I + + R S + C
Sbjct: 174 EIRARKMEDSKEKNGKK-------KRKSLAKRIRERC 203
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 140 bits (355), Expect = 9e-39
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 11/183 (6%)
Query: 451 MPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRL 510
M +K++V+G G GK+++ +++ +F Y TI D K+ S D L
Sbjct: 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPAR-L 59
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPI 569
+ D AGQE FG M Y + G +VF + +F+ V K Q L K D +
Sbjct: 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK----DRDDF 115
Query: 570 PCVLLANKCDQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
P VL+ NK D + + + A F H+ + +FE SAK +N+D+A + LV+ + +
Sbjct: 116 PVVLVGNKADLESQRQVPRSEAS--AFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRK 172
Query: 629 NDK 631
+
Sbjct: 173 YQE 175
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 139 bits (354), Expect = 9e-39
Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 24/177 (13%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
+YK+L++G G GK+++ + + G + + + D E L ++DI
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYD-RSIVVDGEEAS-LMVYDIWE 58
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLLAN 576
Q+ + IV+ VT +F+ + Q A+ + +P +L+ N
Sbjct: 59 QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR----QTDDVPIILVGN 114
Query: 577 KCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
K D EG A + + ETSA + N+ + +V++I
Sbjct: 115 KSDLVRSREVSVDEGRA--------CAVVFDCK-FIETSAALHHNVQALFEGVVRQI 162
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 139 bits (352), Expect = 1e-38
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ ++V F Y TI + K + D + + L++ D AG
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCM-LEILDTAGT 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E+F M +Y K G +V+ +T +TF+ + ++ + +V D +P +L+ NKC
Sbjct: 62 EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL-RVK--DTEDVPMILVGNKC 118
Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D ++G ++ + E+SAK IN+++ LV++I
Sbjct: 119 DLEDERVVGKEQGQN--------LARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 140 bits (354), Expect = 1e-38
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 8/180 (4%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ + + F Y TI + K + D ET + L + D AGQ
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCL-LDILDTAGQ 62
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
E + M Y + G VF + +F+ + +++ + + D +P VL+ NKC
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLVGNKC 119
Query: 579 DQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDS 638
D P + A+ + + + + ETSAK +DDA TLV++I ++ + +
Sbjct: 120 DLPSRTVDTKQAQ--DLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGK 176
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 139 bits (352), Expect = 2e-38
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
Y++ V G G GK+S++ R+V F Y T+ + +V+S D LQ+ D G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICT-LQITDTTGS 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+F M R+ + +V+ +T + + + + + D IP +L+ NKC
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE--IKGDVESIPIMLVGNKC 119
Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D Q E A + + + ETSAK N N+ + + L+
Sbjct: 120 DESPSREVQSSEAEA--------LARTWKCA-FMETSAKLNHNVKELFQELLNLE 165
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 137 bits (347), Expect = 8e-38
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 23/176 (13%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
YK++V+G G GK+++ ++V F Y TI DF K + D + L++ D AG
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSV-LEILDTAGT 61
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD-LDAKVTLPDGNPIPCVLLANK 577
E+F +M +Y K G +V+ + +F + + + K +P +L+ NK
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK----RYEKVPVILVGNK 117
Query: 578 CD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D EG +E + ETSAK +D+ +V+++
Sbjct: 118 VDLESEREVSSSEGR--------ALAEEWGCP-FMETSAKSKTMVDELFAEIVRQM 164
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 137 bits (347), Expect = 1e-37
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 10/182 (5%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
S +P + YK++V+G+ G GK+++ ++ + F Y TI D LK D++ I
Sbjct: 9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAI 67
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
L + D AGQE F M Y + G IV+ VT A+F+ V ++ Q + +V D
Sbjct: 68 -LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL-RVK--DRES 123
Query: 569 IPCVLLANKCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDN-INIDDAAKTLVQKI 626
P +L+ANK D + + K E ++N + ETSAKD +N+D LV+ I
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGK--EMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVI 180
Query: 627 LE 628
+
Sbjct: 181 RQ 182
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 134 bits (340), Expect = 1e-36
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 24/186 (12%)
Query: 458 LYKILVIGELGAGKTSIIKRYVH-QFFSPHYRATIGVDFALKVLSWDHET--IIRLQLWD 514
Y++++IGE G GK+++ + +G D + L D E+ II L +W+
Sbjct: 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
G+ + + + IV+ +T A+F+ + + L IP +L+
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLR---RARQTEDIPIILV 120
Query: 575 ANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
NK D EG A +FI ETSA N+ + + +V+++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFI---------ETSAAVQHNVKELFEGIVRQVR 171
Query: 628 ENDKVQ 633
+
Sbjct: 172 LRRDSK 177
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 133 bits (338), Expect = 2e-36
Identities = 35/187 (18%), Positives = 72/187 (38%), Gaps = 25/187 (13%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
LY+++++G+ G GKTS+ + + + +G D + L+ D E L + D
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTT-LVVVDTWE 61
Query: 518 QERFGN--MTRVYYKEAVGAFIVFDVTRAATFDAVLKW-KQDLDAKVTLPDGNPIPCVLL 574
E+ + IV+ + +F++ + Q + +P +L+
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH----QADHVPIILV 117
Query: 575 ANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
NK D +EG A + + ETSA N+ + + +V+++
Sbjct: 118 GNKADLARCREVSVEEGRA--------CAVVFDCK-FIETSATLQHNVAELFEGVVRQLR 168
Query: 628 ENDKVQA 634
+ A
Sbjct: 169 LRRRDSA 175
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 133 bits (337), Expect = 4e-36
Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 27/207 (13%)
Query: 436 SITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDF 495
S E + M E K+ + G G GK++++ R++ + F Y T+ +
Sbjct: 8 SSGVDLGTENLYFQSMAKSAE--VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY 65
Query: 496 ALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQ 555
+ D E + +++ D AGQE + + G +V+D+T +F+ VL K
Sbjct: 66 R-HQATIDDEVVS-MEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKN 122
Query: 556 D-LDAKVTLPDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWFET 607
+ K + +L+ NK D +EG E + ++E
Sbjct: 123 ILDEIK----KPKNVTLILVGNKADLDHSRQVSTEEGEK--------LATELACA-FYEC 169
Query: 608 SAKDN-INIDDAAKTLVQKILENDKVQ 633
SA NI + L +++ VQ
Sbjct: 170 SACTGEGNITEIFYELCREVRRRRMVQ 196
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 133 bits (336), Expect = 5e-36
Identities = 35/194 (18%), Positives = 78/194 (40%), Gaps = 21/194 (10%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
SS + Y + P+ K+ ++G L +GK++++ RY+ + + G F K +
Sbjct: 8 SSGRENLYFQGPE-----LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEI 60
Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
D ++ + L + D G + VF + +F V + L
Sbjct: 61 VVDGQSYL-LLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLC-- 112
Query: 561 VTLPDGNPIPCVLLANKCDQPKEG---IANNPAKIDEFIKEHNFSGWFETSAKDNINIDD 617
+ + + +P VL+ + I ++ A+ + + ++ET A +N++
Sbjct: 113 -SFRNASEVPMVLVGTQDAISAANPRVIDDSRAR--KLSTDLKRCTYYETCATYGLNVER 169
Query: 618 AAKTLVQKILENDK 631
+ + QK++ K
Sbjct: 170 VFQDVAQKVVALRK 183
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 129 bits (327), Expect = 5e-35
Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 12/178 (6%)
Query: 458 LYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
++ V+G+ +GK+S+I R++ + T + K + D +T + + + + AG
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYK-KEMLVDGQTHL-VLIREEAG 63
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD-AKVTLPDGNPIPCVLLAN 576
+ A VF + +F AV + L + G + V +
Sbjct: 64 APDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 577 KCDQPKE-GIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQ 633
+ + + A+ + ++ET A +N+D + + QK++ K Q
Sbjct: 119 RISASSPRVVGDARAR--ALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQ 174
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 138 bits (349), Expect = 7e-35
Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 17/191 (8%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETI- 507
K+ +IG+ AGKTS++K+ + + F P T G++ K
Sbjct: 32 KGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEN 91
Query: 508 ------IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKV 561
WD GQE + + + ++ D T W + ++
Sbjct: 92 DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKY- 147
Query: 562 TLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKT 621
G P +++ NK D+ KI+E + S K+ ++ AK+
Sbjct: 148 ----GGKSPVIVVMNKIDENPS-YNIEQKKINERFPAIENR-FHRISCKNGDGVESIAKS 201
Query: 622 LVQKILENDKV 632
L +L D +
Sbjct: 202 LKSAVLHPDSI 212
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 129 bits (327), Expect = 1e-34
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 439 NGSSKEVSPYSKMPDKR-EFLYKILVIGELGAGKTSIIKRY--VHQFFSPHYRATIGVDF 495
N + +S S + + Y++++IGE G GK+++ + VH +G D
Sbjct: 17 NLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDT 75
Query: 496 ALKVLSWDHET--IIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKW 553
+ L D E+ II L +W+ G+ + + + IV+ +T A+F+ +
Sbjct: 76 YERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL 133
Query: 554 KQDL-DAKVTLPDGNPIPCVLLANKCD-------QPKEGIANNPAKIDEFIKEHNFSGWF 605
+ L A+ IP +L+ NK D EG A + +
Sbjct: 134 RIQLRRAR----QTEDIPIILVGNKSDLVRCREVSVSEGRA--------CAVVFDCK-FI 180
Query: 606 ETSAKDNINIDDAAKTLVQKI 626
ETSA N+ + + +V+++
Sbjct: 181 ETSAAVQHNVKELFEGIVRQV 201
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 128 bits (324), Expect = 2e-34
Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 21/176 (11%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+ ++G GAGK+++ +++ + F Y + ++ + DH+ + L++ D A
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVH-LRVMDTADL 79
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ N R Y A +V+ V +FD+ + + L + IP +LL NK
Sbjct: 80 DTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS-IPALLLGNKL 137
Query: 579 D-------QPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNI-NIDDAAKTLVQKI 626
D EG+A +FE SA + ++ V++
Sbjct: 138 DMAQYRQVTKAEGVA--------LAGRFGC-LFFEVSACLDFEHVQHVFHEAVREA 184
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 108 bits (272), Expect = 2e-27
Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 16/189 (8%)
Query: 453 DKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRA-----------TIGVDFALKVLS 501
RE +KI+ G +GKT+ + ++++ + T+ DF +
Sbjct: 9 ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 502 WDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLD-AK 560
R L+ + GQ + ++ + G V D + +
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAK 620
+ +P V+ NK D P A + + E A + + + K
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184
Query: 621 TLVQKILEN 629
+ + +L
Sbjct: 185 EVSRLVLAR 193
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 100 bits (250), Expect = 2e-24
Identities = 40/201 (19%), Positives = 84/201 (41%), Gaps = 13/201 (6%)
Query: 436 SITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDF 495
S + +++ + + + KI+V+G+ GKT ++ + Y T+ +F
Sbjct: 1 SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60
Query: 496 ALKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWK 554
+ + + +E L LWD AGQE + + + Y ++ + F V +FD + KW+
Sbjct: 61 SHVM-KYKNEEF-ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWE 118
Query: 555 QDLDAKVTLPDGNPIPCVLLANKCD---QPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611
++ K + VL+ K D + + + D+ ++ + E S+
Sbjct: 119 PEI--KHYIDT---AKTVLVGLKVDLRKDGSDDV--TKQEGDDLCQKLGCVAYIEASSVA 171
Query: 612 NINIDDAAKTLVQKILENDKV 632
I +++ + V I N V
Sbjct: 172 KIGLNEVFEKSVDCIFSNKPV 192
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 95.9 bits (239), Expect = 4e-23
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 19/189 (10%)
Query: 450 KMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIR 509
M R K + +G+ GKT ++ Y F Y T+ +F+ + + T+
Sbjct: 2 SMSASRFI--KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATV-N 57
Query: 510 LQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNP 568
L LWD AGQE + + + Y+ A + F + A+++ V KW +L K P
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL--KHYAPG--- 112
Query: 569 IPCVLLANKCD---QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNINIDDAA 619
+P VL+ K D + I + + +E K + E S+K N+
Sbjct: 113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
Query: 620 KTLVQKILE 628
++ +L+
Sbjct: 173 DAAIRVVLQ 181
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 94.8 bits (236), Expect = 2e-22
Identities = 41/190 (21%), Positives = 76/190 (40%), Gaps = 22/190 (11%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
SS V S M R K++++G+ GKT ++ + F Y T+ + + +
Sbjct: 11 SSGLVPRGSHMAAIR---KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADI 66
Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDA 559
D + + L LWD AGQE + + + Y + + F + + + + KW ++
Sbjct: 67 EVDGKQV-ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-- 123
Query: 560 KVTLPDGNPIPCVLLANKCD--QPKEGIANNPAKIDEFI---------KEHNFSGWFETS 608
K P+ +P +L+ NK D Q + E + + G+ E S
Sbjct: 124 KHFCPN---VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180
Query: 609 AKDNINIDDA 618
AK + +
Sbjct: 181 AKTKEGVREV 190
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 95.1 bits (237), Expect = 2e-22
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
S M + K + +G+ GKT ++ Y F Y T+ +F+ V + D + +
Sbjct: 2 SHMSVSKFI--KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIV- 57
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGN 567
L LWD AGQE + + + Y+ A + F + A+++ VL KW +L + P+
Sbjct: 58 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL--RRFAPN-- 113
Query: 568 PIPCVLLANKCD--QPKEGIANNPAKID-----EFIKEHNFSGWFETSAKDNINIDDAAK 620
+P VL+ K D K +A++ I E K+ + + E S+K N+
Sbjct: 114 -VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172
Query: 621 TLVQKILENDKVQ 633
T ++ +L+ + +
Sbjct: 173 TAIKVVLQPPRRK 185
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 94.1 bits (234), Expect = 4e-22
Identities = 38/205 (18%), Positives = 83/205 (40%), Gaps = 21/205 (10%)
Query: 439 NGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
N + ++ P R K++++G+ G GKTS++ + F Y T+ + +
Sbjct: 17 NLYFQSMAGEEAPPGVRSV--KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN 74
Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
+ + + L +WD AGQ+ + + ++Y +A + FDVT +FD + +W ++
Sbjct: 75 L-QVKGKPV-HLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV 132
Query: 558 DAKVTLPDGNPIPCVLLANKCD--QPKEGIANNPAKIDEFI---------KEHNFSGWFE 606
+P +++ K D + K + E + + + E
Sbjct: 133 --NHFCKK---VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187
Query: 607 TSAKDNINIDDAAKTLVQKILENDK 631
SA+ + N+ + + L +
Sbjct: 188 CSARLHDNVHAVFQEAAEVALSSRG 212
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 92.1 bits (229), Expect = 1e-21
Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 21/191 (10%)
Query: 441 SSKEVSPYSKM--PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
SS V S M + K +V+G+ GKT ++ Y F Y T+ +++
Sbjct: 11 SSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN 70
Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
V D + + L LWD AGQE + + + Y + I F + A+F+ V KW ++
Sbjct: 71 V-MVDGKPV-NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV 128
Query: 558 DAKVTLPDGNPIPCVLLANKCD-----QPKEGIANN------PAKIDEFIKEHNFSGWFE 606
+ P+ P +L+ K D E + + KE + E
Sbjct: 129 --RHHCPN---TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183
Query: 607 TSAKDNINIDD 617
SA +
Sbjct: 184 CSALTQRGLKT 194
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 91.7 bits (228), Expect = 2e-21
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 24/204 (11%)
Query: 439 NGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALK 498
+ SS V S M + KI+V+G+ GKT+++ + F +Y T+ ++
Sbjct: 9 HHSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS 68
Query: 499 VLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDL 557
D + I L LWD +G + N+ + Y ++ I FD++R T D+VL KWK ++
Sbjct: 69 F-EIDTQRI-ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126
Query: 558 DAKVTLPDGNPIPCVLLANKCD-----QPKEGIANN------PAKIDEFIKEHNFSGWFE 606
+ P+ +L+ K D ++N+ + K+ + + E
Sbjct: 127 --QEFCPN---TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181
Query: 607 TSAKDNIN-----IDDAAKTLVQK 625
SA + N A V K
Sbjct: 182 CSALQSENSVRDIFHVATLACVNK 205
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 91.0 bits (226), Expect = 4e-21
Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 19/171 (11%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++V+G+ GKT ++ + F Y T+ ++ + D + + L LWD AGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQV-ELALWDTAGQE 84
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + F V + + + KW ++ K P+ +P +L+ANK
Sbjct: 85 DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV--KHFCPN---VPIILVANKK 139
Query: 579 D--QPKEGIANNPAKIDEFI---------KEHNFSGWFETSAKDNINIDDA 618
D + E + + E SAK + +
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREV 190
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 87.9 bits (218), Expect = 4e-20
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 19/187 (10%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
K +++G+ GKTS++ Y + Y T D V+S D + RLQL D AGQ
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPV-RLQLCDTAGQ 78
Query: 519 ERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANK 577
+ F + + Y + F V ++F V KW ++ + P P +L+ +
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI--RCHCPK---APIILVGTQ 133
Query: 578 CD-----QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D + + +E + + E SA N+ + +
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193
Query: 627 LENDKVQ 633
++ Q
Sbjct: 194 IQYSDTQ 200
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 86.3 bits (214), Expect = 1e-19
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 24/183 (13%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
KI+V+G+ GKT+++ + F +Y T+ ++ D + I L LWD +G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRI-ELSLWDTSGSP 66
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ N+ + Y ++ I FD++R T D+VL KWK ++ + P+ +L+ K
Sbjct: 67 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI--QEFCPN---TKMLLVGCKS 121
Query: 579 D-----QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNIN-----IDDAAKTL 622
D ++N+ + K+ + + E SA + N A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181
Query: 623 VQK 625
V K
Sbjct: 182 VNK 184
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 85.6 bits (212), Expect = 2e-19
Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 19/192 (9%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
S + K +V+G+ GKT ++ Y + F Y T+ D ++ +
Sbjct: 9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQY- 66
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGN 567
L L+D AGQE + + + Y I F V A+F V +W +L K P+
Sbjct: 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL--KEYAPN-- 122
Query: 568 PIPCVLLANKCDQPKEGIANN-----------PAKIDEFIKEHNFSGWFETSAKDNINID 616
+P +L+ + D + + + KE + E SA +
Sbjct: 123 -VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLK 181
Query: 617 DAAKTLVQKILE 628
+ IL
Sbjct: 182 TVFDEAIIAILT 193
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 84.0 bits (208), Expect = 6e-19
Identities = 41/186 (22%), Positives = 72/186 (38%), Gaps = 19/186 (10%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K +V+G+ GKT ++ Y F Y T+ D + D + + L LWD AGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPV-NLGLWDTAGQE 64
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKC 578
+ + + Y + + I F + A+F+ V KW ++ + P+ P +L+ K
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV--RHHCPN---TPIILVGTKL 119
Query: 579 D-----QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
D E + + KE + E SA + ++ +L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
Query: 628 ENDKVQ 633
V+
Sbjct: 180 CPPPVK 185
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 75.7 bits (186), Expect = 9e-16
Identities = 32/172 (18%), Positives = 72/172 (41%), Gaps = 20/172 (11%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
K++++G++ GKT++++ + Y T+ ++ L + + + L LWD +G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRV-ELSLWDTSGSP 86
Query: 520 RFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLK-WKQDLDAKVTLPDGNPIPCVLLANKC 578
+ N+ + Y ++ + FD++R T D+ LK W+ ++ P +L+ K
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI--LDYCPS---TRVLLIGCKT 141
Query: 579 D-----QPKEGIANN------PAKIDEFIKEHNFSGWFETSAKDN-INIDDA 618
D +++ + K+ + E SA + +I
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 77.0 bits (189), Expect = 2e-15
Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 22/191 (11%)
Query: 452 PDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQ 511
P K+L++G G+GK+S+ + S +G ++ + L
Sbjct: 1 PLGS----KLLLMGRSGSGKSSMRSIIFSNY-SAFDTRRLGATIDVEHSHLRFLGNMTLN 55
Query: 512 LWDIAGQERFGNMT-----RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDG 566
LWD GQ+ F ++ VFDV + + + L L
Sbjct: 56 LWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ---LRKY 112
Query: 567 NP-IPCVLLANKCD-----QPKEGIANNPAKIDEFIKEHNFSGW--FETSAKDNINIDDA 618
+P +L +K D + +E + E E F F TS D ++ A
Sbjct: 113 SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKA 171
Query: 619 AKTLVQKILEN 629
+V ++ N
Sbjct: 172 WSQIVCSLIPN 182
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 73.9 bits (181), Expect = 7e-15
Identities = 49/240 (20%), Positives = 79/240 (32%), Gaps = 78/240 (32%)
Query: 459 YKILVIG---------ELGAGKTSIIKRYVHQF---FSPHYRATIG-VDFALKVLSWDHE 505
Y I V+G + G GK+ + R+V F + + + DF +V++ DH
Sbjct: 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHF 79
Query: 506 TI-------------IRLQLW-------DIAGQERFGNMTRVYYKEAV------------ 533
++ + D Q + Y K A
Sbjct: 80 LYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMY 139
Query: 534 -------------------------GAFIVFDVTRAA--TFDAVLKWKQDLDAKVTLPDG 566
G + DV+R FD LK+ +L ++
Sbjct: 140 FCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AK 196
Query: 567 NPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
P V++ KCD+ E + + + N ETSA+ N+N+D A TLVQ I
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHT--FALSKKNLQ-VVETSARSNVNVDLAFSTLVQLI 253
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 69.2 bits (170), Expect = 9e-14
Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 30/195 (15%)
Query: 442 SKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFA 496
+ +P R+ ++L++G AGKTSI+ R V P T+G
Sbjct: 8 ASLKQTLGLLPADRK--IRVLMLGLDNAGKTSILYRLHLGDVVTT--VP----TVG--VN 57
Query: 497 LKVLSWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQD 556
L+ L + + I ++WD+ GQ R Y+ + V D T K +
Sbjct: 58 LETLQYKN---ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA---KHE 111
Query: 557 LDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKD 611
L A + + ++ ANK D P A + A+I E I ++ ++S+K
Sbjct: 112 LYALLDEDELRKSLLLIFANKQDLPD---AASEAEIAEQLGVSSIMNRTWT-IVKSSSKT 167
Query: 612 NINIDDAAKTLVQKI 626
+ + LV+++
Sbjct: 168 GDGLVEGMDWLVERL 182
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 69.2 bits (169), Expect = 1e-13
Identities = 35/192 (18%), Positives = 73/192 (38%), Gaps = 22/192 (11%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETII 508
+ +IL++G +GK+SI K H+ SP+ + + + + +
Sbjct: 14 LYFQGSK---PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFV 69
Query: 509 RLQLWDIAGQERFGNMT---RVYYKEAVGAFIVFDVTRAATFDAVLKWKQDL-DAKVTLP 564
Q+WD GQ F + T + ++ V D +A+ + + A P
Sbjct: 70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD-DYMEALTRLHITVSKAYKVNP 128
Query: 565 DGNPIPCVLLANKCD-----QPKEGIANNPAKIDEFIKEHNFSGW----FETSAKDNINI 615
D + + +K D E + + ++ + + + TS D+ +I
Sbjct: 129 D---MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SI 184
Query: 616 DDAAKTLVQKIL 627
+A +VQK++
Sbjct: 185 FEAFSKVVQKLI 196
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 68.9 bits (169), Expect = 1e-13
Identities = 38/191 (19%), Positives = 76/191 (39%), Gaps = 30/191 (15%)
Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFALKVL 500
S +S++ K++ +IL++G AGKT+I+ + V P TIG F ++ +
Sbjct: 19 SLFSRIFGKKQ--MRILMVGLDAAGKTTILYKLKLGEIVTT--IP----TIG--FNVETV 68
Query: 501 SWDHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
+ + I +WD+ GQ++ + R Y++ G V D +L
Sbjct: 69 EYKN---ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQES---ADELQKM 122
Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINI 615
+ + ++ ANK D P A +++ + ++ + T A +
Sbjct: 123 LQEDELRDAVLLVFANKQDMPN---AMPVSELTDKLGLQHLRSRTWYV-QATCATQGTGL 178
Query: 616 DDAAKTLVQKI 626
D L ++
Sbjct: 179 YDGLDWLSHEL 189
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 67.2 bits (165), Expect = 3e-13
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 30/183 (16%)
Query: 454 KREFLYKILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFALKVLSWDHETII 508
RE +IL++G GAGKT+I+ R V P TIG F ++ +++ + +
Sbjct: 5 TRE--MRILILGLDGAGKTTILYRLQVGEVVTT--IP----TIG--FNVETVTYKN---L 51
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
+ Q+WD+ G R YY V D K +L A + +
Sbjct: 52 KFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS---KSELVAMLEEEELRK 108
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLV 623
V+ ANK D + A +++ +K+ + F+TSA +D+A + LV
Sbjct: 109 AILVVFANKQDMEQ---AMTSSEMANSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLV 164
Query: 624 QKI 626
+ +
Sbjct: 165 ETL 167
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 67.2 bits (165), Expect = 4e-13
Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 17/185 (9%)
Query: 446 SPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
S K E ++ ++G +GKT+ + F+ T+G F ++ ++ +
Sbjct: 12 SGLVPRGSKEE--MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN- 66
Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
+ ++LWDI GQ RF +M Y + IV+ + AA + + K +L + P
Sbjct: 67 --VTIKLWDIGGQPRFRSMWERYCRGVSA--IVY-MVDAADQEKIEASKNELHNLLDKPQ 121
Query: 566 GNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG--W--FETSAKDNINIDDAAKT 621
IP ++L NK D P A + ++ E + + S K+ NID +
Sbjct: 122 LQGIPVLVLGNKRDLPG---ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW 178
Query: 622 LVQKI 626
L+Q
Sbjct: 179 LIQHS 183
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 67.3 bits (165), Expect = 4e-13
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 26/181 (14%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRL 510
+RE ++L++G AGKT+I+K++ + SP T+G F +K L +L
Sbjct: 16 ERE--LRLLMLGLDNAGKTTILKKFNGEDVDTISP----TLG--FNIKTLEHRG---FKL 64
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
+WD+ GQ+ + R Y++ G V D +++L + +
Sbjct: 65 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGAT 121
Query: 571 CVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
++ ANK D P A + I E I+ H++ SA ++ L+
Sbjct: 122 LLIFANKQDLPG---ALSCNAIQEALELDSIRSHHWR-IQGCSAVTGEDLLPGIDWLLDD 177
Query: 626 I 626
I
Sbjct: 178 I 178
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 65.7 bits (161), Expect = 8e-13
Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 28/177 (15%)
Query: 460 KILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWD 514
+IL++G AGKT+I+ + V P TIG F ++ + + + I +WD
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTT--IP----TIG--FNVETVEYKN---ISFTVWD 50
Query: 515 IAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ GQ++ + R Y++ G V D + +++L + + ++
Sbjct: 51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA---REELMRMLAEDELRDAVLLVF 107
Query: 575 ANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
ANK D P A N A+I + ++ N+ T A + + L ++
Sbjct: 108 ANKQDLPN---AMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLDWLSNQL 160
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 65.7 bits (161), Expect = 1e-12
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 26/191 (13%)
Query: 449 SKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHE 505
++ + +E +K++++G AGKT+I+ ++ SP TIG ++ + ++
Sbjct: 9 WRLFNHQE--HKVIIVGLDNAGKTTILYQFSMNEVVHTSP----TIG--SNVEEIVINN- 59
Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
R +WDI GQE + YY +V D T +++L + D
Sbjct: 60 --TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYKMLAHED 114
Query: 566 GNPIPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAK 620
++ ANK D + A+I +F IK+H + A + +
Sbjct: 115 LRKAGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLE 170
Query: 621 TLVQKILENDK 631
++ ++ +
Sbjct: 171 WMMSRLKIRLE 181
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 65.8 bits (161), Expect = 2e-12
Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 22/181 (12%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRY-VHQFFSPHYRATIGVDFALKVLSWDHETIIRLQL 512
+E +L +G +GKT+II + S + TIG F+++ + +
Sbjct: 19 SKE--VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS---LSFTV 71
Query: 513 WDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD--GNPIP 570
+D++GQ R+ N+ YYKE V D + K++LD + PD IP
Sbjct: 72 FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVA---KEELDTLLNHPDIKHRRIP 128
Query: 571 CVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
+ ANK D A K+ + IK+ + + A + + L +
Sbjct: 129 ILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWH-ICASDAIKGEGLQEGVDWLQDQ 184
Query: 626 I 626
I
Sbjct: 185 I 185
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 64.9 bits (159), Expect = 2e-12
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 26/186 (13%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRL 510
+E +IL++G AGKT+++K+ + +P T G F +K + +L
Sbjct: 14 DQE--VRILLLGLDNAGKTTLLKQLASEDISHITP----TQG--FNIKSVQSQG---FKL 62
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
+WDI GQ + R Y++ V D F+ Q+L + + +P
Sbjct: 63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET---GQELTELLEEEKLSCVP 119
Query: 571 CVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQK 625
++ ANK D A ++I E I++ + SA + D + +
Sbjct: 120 VLIFANKQDLLT---AAPASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGMNWVCKN 175
Query: 626 ILENDK 631
+ K
Sbjct: 176 VNAKKK 181
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 64.6 bits (158), Expect = 3e-12
Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 24/180 (13%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFF---SPHYRATIGVDFALKVLSWDHETIIRL 510
+E +IL++G GAGKT+I+ R P TIG F ++ LS+ + ++L
Sbjct: 16 NKE--LRILILGLDGAGKTTILYRLQIGEVVTTKP----TIG--FNVETLSYKN---LKL 64
Query: 511 QLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIP 570
+WD+ GQ R YY + V D T ++L + +
Sbjct: 65 NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA---SKELHLMLQEEELQDAA 121
Query: 571 CVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW----FETSAKDNINIDDAAKTLVQKI 626
++ ANK DQP A + +++ + + +SA I + L+ I
Sbjct: 122 LLVFANKQDQPG---ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 4e-12
Identities = 94/613 (15%), Positives = 173/613 (28%), Gaps = 216/613 (35%)
Query: 42 LKFGSV---FSLSSQS--------DQSEKS-PRKTSISSPEEKQKRRRFSFLSDKTEKLA 89
L GS+ + + S +Q K P T + +++ + E +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP--------TTPAELVG 62
Query: 90 RKLSISSEKLDKKSAKQSTEKVNEKPVKKSSIEQVNE---RGVDVEFSTSAPLESTTSKK 146
+ L S ++ Q + V + + G D+ + +A L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQ------VLNLCLTEFENCYLEGNDIH-ALAAKLLQENDTT 115
Query: 147 SPLKFKLLKK----LSFSKKPKTKEKP------VKKSSIE-------Q-VNERGVDVE-- 186
+L+K +K+P K+ V + + + Q + + E
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELR 174
Query: 187 --FSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKTKEESSEDTMDGKNGGKSKKKGGKTK 244
+ T L K S + L +L ++ D +
Sbjct: 175 DLYQTYHVLVGDLIKFS---AETLSELI---------RTTLDA--------------EKV 208
Query: 245 FKKIVPVEPSALASPNTIPDTPPTPQNSKVFLEKEREVKEREGEQQEGGSVTSS-PSITP 303
F + + + L +P+ PD +L S+ S P I
Sbjct: 209 FTQGLNIL-EWLENPSNTPDKD--------YLL----------------SIPISCPLIGV 243
Query: 304 T--------------PPTQSDTSLLSTPAQSQDLDSAT-----DNDETYDTP-------- 336
P + + L SQ L +A D+ E++
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 337 --MG-----TSPNSSVMNQAPGDSDQDLDVTLKENTE-LPSAAAAASDVKSPSDLKKEIL 388
+G PN+S+ DS EN E +PS + S++ + ++ +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDS--------LENNEGVPSPMLSISNL-TQEQVQDYV- 353
Query: 389 SITTPIVTEAGRKKHNEPKPFTSPNSSS--NGEKETAASPNTSVVAG------------- 433
K N P S NG VV+G
Sbjct: 354 ------------NKTNSHLPAGKQVEISLVNG-------AKNLVVSGPPQSLYGLNLTLR 394
Query: 434 KTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYR---AT 490
K +G + P+S+ K +F + L + F S
Sbjct: 395 KAKAPSGLDQSRIPFSER--KLKFSNRFLPVAS--------------PFHSHLLVPASDL 438
Query: 491 IGVDFALKVLSWDHETIIRLQLWDIA-GQERFGNMTRVYYKEAVGAFIVFDVTRAATFDA 549
I D +S++ + I++ ++D G ++ RV I +
Sbjct: 439 INKDLVKNNVSFNAKD-IQIPVYDTFDGS----DL-RVLSGS-----ISERIVDCIIRLP 487
Query: 550 VLKWKQDLDAKVT 562
V KW+ K T
Sbjct: 488 V-KWETTTQFKAT 499
Score = 33.5 bits (76), Expect = 0.30
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 40/102 (39%)
Query: 92 LSISSEKLD---KKSAKQSTEKV-----NEKPVKKSSIEQV----NERGVDVEFSTSAPL 139
S S E L ++ K++ V N +Q + R +D
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYN------VENQQYVAAGDLRALD--------- 1863
Query: 140 ESTTSKKSPLKFKLLKKLSFSKKPKTKEKPVKKS-SIEQVNE 180
+ L+F K K ++KS S+E+V
Sbjct: 1864 ------------TVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 64.2 bits (157), Expect = 5e-12
Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRY-----VHQFFSPHYRATIGVDFALKVLSWDHETII 508
+E +K++++G AGKT+I+ ++ VH SP TIG ++ + ++
Sbjct: 19 SQE--HKVIIVGLDNAGKTTILYQFSMNEVVHT--SP----TIG--SNVEEIVINN---T 65
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
R +WDI GQE + YY +V D T +++L + D
Sbjct: 66 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT---REELYKMLAHEDLRK 122
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLV 623
++ ANK D + A+I +F IK+H + A + + ++
Sbjct: 123 AGLLIFANKQDVKE---CMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEWMM 178
Query: 624 QKI 626
++
Sbjct: 179 SRL 181
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 61.9 bits (150), Expect = 2e-10
Identities = 42/235 (17%), Positives = 77/235 (32%), Gaps = 25/235 (10%)
Query: 409 FTSPNSSSNGEKE--TAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKILVIGE 466
P G+ + + + + G + + + L K +V+G+
Sbjct: 104 HLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGD 163
Query: 467 LGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQERFGNMTR 526
GKT ++ Y F P D + D + + L LWD AG E + +
Sbjct: 164 GAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPV-NLGLWDTAGLEDYDRLRP 221
Query: 527 VYYKEAVGAFIVFDVTRAATFDAVL-KWKQDLDAKVTLPDGNPIPCVLLANKCD-----Q 580
+ Y + I F + A+F V KW ++ + P+ P +L+ K D
Sbjct: 222 LSYPQTDVFLICFSLVSPASFHHVRAKWYPEV--RHHCPN---TPIILVGTKLDLRDDKD 276
Query: 581 PKEGIANN------PAKIDEFIKEHNFSGWFETSAKDNINIDD----AAKTLVQK 625
E + + KE + E SA + A + ++
Sbjct: 277 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 59.3 bits (143), Expect = 1e-09
Identities = 37/182 (20%), Positives = 68/182 (37%), Gaps = 21/182 (11%)
Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
+L++G GK+SI K H P + T+I L + ++ GQ
Sbjct: 2 VLLMGVRRCGKSSICKVVFHN-MQPLDTLYLEST--SNPSLEHFSTLIDLAVMELPGQLN 58
Query: 521 FG--NMTRVYYKEAVGAFI-VFDVTRAATFDAVLKWKQDLDAKVTLPDGNP-IPCVLLAN 576
+ + ++VGA + V D +A+ ++ NP I +L +
Sbjct: 59 YFEPSYDSERLFKSVGALVYVIDSQD-EYINAITNLAMIIEY---AYKVNPSINIEVLIH 114
Query: 577 KCD-----QPKEGIANNPAKIDEFIKEHNFSGW----FETSAKDNINIDDAAKTLVQKIL 627
K D + + + E + E G + TS D+ +I +A +VQK++
Sbjct: 115 KVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQKLI 173
Query: 628 EN 629
Sbjct: 174 PE 175
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 56.4 bits (137), Expect = 2e-09
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 45/194 (23%)
Query: 454 KREFLYKILVIGELGAGKTSIIKR-----YVHQFFSPHYRATIGVDFALKVLSWDHETII 508
+ K+L +G AGKT+++ P T + L+ + I
Sbjct: 21 NKH--GKLLFLGLDNAGKTTLLHMLKNDRLAT--LQP----TWH--PTSEELAIGN---I 67
Query: 509 RLQLWDIAGQERFGNMTRVYYKEAVGAFIVF-----DVTRAATFDAVLKWKQDLDAKVTL 563
+ +D+ G + + + Y+ E G IVF D R +A + +LDA +
Sbjct: 68 KFTTFDLGGHIQARRLWKDYFPEVNG--IVFLVDAADPERFD--EA----RVELDALFNI 119
Query: 564 PDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG---------W--FETSAKDN 612
+ +P V+L NK D P A + A++ + N +G F S
Sbjct: 120 AELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 176
Query: 613 INIDDAAKTLVQKI 626
+A + L Q I
Sbjct: 177 NGYLEAFQWLSQYI 190
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 55.0 bits (133), Expect = 9e-09
Identities = 34/194 (17%), Positives = 70/194 (36%), Gaps = 40/194 (20%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLW 513
K+ K++ +G AGKT+++ + T+ + L+ + +
Sbjct: 23 KKT--GKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG---MTFTTF 74
Query: 514 DIAGQERFGNMTRVYYKEAVGAFIVF-----DVTRAATFDAVLKWKQDLDAKVTLPDGNP 568
D+ G + + + Y G IVF D R ++ K++LD+ +T
Sbjct: 75 DLGGHIQARRVWKNYLPAING--IVFLVDCADHERLL--ES----KEELDSLMTDETIAN 126
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG--------------W--FETSAKDN 612
+P ++L NK D+P+ A + ++ E + + F S
Sbjct: 127 VPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKR 183
Query: 613 INIDDAAKTLVQKI 626
+ + + Q I
Sbjct: 184 QGYGEGFRWMAQYI 197
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 52.4 bits (126), Expect = 6e-08
Identities = 24/138 (17%), Positives = 42/138 (30%), Gaps = 15/138 (10%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQE 519
I++ G +GKTS++ P + A + L D G
Sbjct: 50 SIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDG------SGVTLVDFPGHV 102
Query: 520 RFGNMTRVYYKEAVGAF--IVFDV---TRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ Y K ++F V ++ D+ + N I ++
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162
Query: 575 ANKCDQPKEGIANNPAKI 592
NK + A P+KI
Sbjct: 163 CNKSELFT---ARPPSKI 177
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 9e-08
Identities = 57/349 (16%), Positives = 107/349 (30%), Gaps = 112/349 (32%)
Query: 376 DVKSPSDLKKEILS-------ITTPIVTEAGR--------KKHNEPKPFT----SPN--- 413
D K D+ K ILS I + K+ + F N
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 414 -SSSNGEKETAASPNTSVVAGKTSITNGSSKEVSPYS-----KMPDKREFLYK------I 461
S ++ S T + + ++ + Y+ R+ L + +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 462 LVIGELGAGKTSII------KRYVHQFFSPHYRATIG----VDFALKVL---------SW 502
L+ G LG+GKT + + + + + + L++L +W
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 503 ----DHETIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFD-VTRAATFDAVLKWKQDL 557
DH + I+L++ I + R ++ Y +V V A ++A +L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAF-----NL 264
Query: 558 DAK--VTLPDGNPIPCV------------------------LLANKC------DQPKEGI 585
K +T + LL K D P+E +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVL 323
Query: 586 ANNP---AKIDEFIKEHN--FSGWFETSAKDNINIDDAAKTLVQKILEN 629
NP + I E I++ + W ++N D T+++ L
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNW------KHVNC-DKLTTIIESSLNV 365
Score = 50.2 bits (119), Expect = 2e-06
Identities = 88/627 (14%), Positives = 158/627 (25%), Gaps = 235/627 (37%)
Query: 46 SVFSLSSQSDQSEKSPRKTSISSPEEKQKRRRFSFLSDKTEKLARKLSISSEKLDKKSAK 105
S+ S + D S R F L K E++ +K E++ + + K
Sbjct: 44 SILS-KEEIDHIIMSK-------DAVSGTLRLFWTLLSKQEEMVQKFV---EEVLRINYK 92
Query: 106 QSTEKVNEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKT 165
+ + + S + ++ D ++ + F+K +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--------------------FAKYNVS 132
Query: 166 KEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLKKLSFSKKPKTKEESSE 225
+ +P K L+ + L +L +P
Sbjct: 133 RLQPYLK------------------------------LR-QALLEL----RPAKNV---- 153
Query: 226 DTMDGKNG-GKSKKKGGKTKFKKIVPVEPSALASPNTIPDTPPTPQNS-KVF-LEKEREV 282
+DG G GK+ +A + + K+F L
Sbjct: 154 -LIDGVLGSGKT------------------WVAL-DVCLSYKVQCKMDFKIFWL------ 187
Query: 283 KEREGEQQEGGSVTSSPSITPTPPTQSDTSLLSTPAQSQDLDSATDNDETYDTPMGTSPN 342
++ + S ++L Q L D P TS +
Sbjct: 188 -----------NLKNC---------NSPETVL---EMLQKLLYQID-------PNWTSRS 217
Query: 343 SSVMN-QAPGDSDQDLDVTLKENTELPSAAAAASDVKSPSDLKK-----EILSITT--PI 394
N + S Q L ++ + +V++ +IL +TT
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQ 276
Query: 395 VTE---AGRKKH----NEPKPFTSPNSSSNGEKETAASPNTSVVAGKTSITNGSSKEVSP 447
VT+ A H + T E S++
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLT--------PDEVK-----SLLLKYLDC---------R 314
Query: 448 YSKMPDKREFLYKI--LVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE 505
+P RE L + SII + AT D V
Sbjct: 315 PQDLP--REVL-TTNPRRL--------SIIAESIRDG-----LATW--DNWKHVNCDKLT 356
Query: 506 TIIRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD 565
TII L + E R + VF P
Sbjct: 357 TIIESSLNVLEPAE-----YRKMFDR----LSVF------------------------PP 383
Query: 566 GNPIP----CVLLANKCDQPKEGIANNPAK---IDEFIKEHNFS---GWFETSAKDNINI 615
IP ++ + + N K +++ KE S + E K
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK----- 438
Query: 616 DDAAKTLVQKILENDKVQANGDSHATS 642
+ L + I+++ + DS
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLI 465
Score = 36.4 bits (83), Expect = 0.034
Identities = 39/292 (13%), Positives = 85/292 (29%), Gaps = 71/292 (24%)
Query: 46 SVFSLSSQSDQSEKSPRKTSISSPEEKQKRRRFSFLSD-KTEKLARKLSISSEKLDKKSA 104
L + + +PR+ SI + + + +KL + S L+
Sbjct: 314 RPQDLPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 105 KQSTEK--VNEKPVKKSSI-EQV------NERGVDVEFSTSAPLESTTSKKSPLKFKL-L 154
++ ++ V I + + DV + + + +K P + + +
Sbjct: 372 RKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 155 KKLSFSKKPKTKEKPVK-KSSIEQVN-ERGVDVE------------------FSTSAPLE 194
+ K K + + +S ++ N + D + E
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 195 STTS-KKSPLKFKLLK-KLSFSKKPKTKEESSEDTM-DGKNGGKSKKKGGKTKFKK-IVP 250
T + L F+ L+ K+ S +T+ K +K I
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK------------FYKPYICD 536
Query: 251 VEPSALASPNTIPD-----------TPPT--------PQNSKVFLEKEREVK 283
+P N I D + T ++ +F E ++V+
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 52.1 bits (125), Expect = 1e-07
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 15/139 (10%)
Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
I++ G +GKTS++ P + A + L D G +
Sbjct: 15 IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYDG------SGVTLVDFPGHVK 67
Query: 521 FGNMTRVYYKEAVGAF--IVFDV---TRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
Y K ++F V ++ D+ + N I ++
Sbjct: 68 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127
Query: 576 NKCDQPKEGIANNPAKIDE 594
NK + A P+KI +
Sbjct: 128 NKSELFT---ARPPSKIKD 143
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 50.9 bits (122), Expect = 2e-07
Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 11/149 (7%)
Query: 459 YKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQ 518
+L +G +GKT + R + + +I + + ++ L L D+ G
Sbjct: 8 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 519 ERF-GNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPD--GNPIPCVLLA 575
E + + A +VF V AA V + L + N ++
Sbjct: 65 ESLRFQLLDRFKSSARA--VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122
Query: 576 NKCDQPKEGIANNPAKIDEFIKEHNFSGW 604
NK D A + I + +++ +
Sbjct: 123 NKQDIAM---AKSAKLIQQQLEKELNTLR 148
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 47.2 bits (112), Expect = 9e-06
Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 505 ETI----IRLQLWDIAGQERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAK 560
ET+ I +WD+ GQ++ + R Y++ G V D + +++L
Sbjct: 202 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA---REELMRM 258
Query: 561 VTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINI 615
+ + ++ ANK D P A N A+I + ++ N+ T A +
Sbjct: 259 LAEDELRDAVLLVFANKQDLPN---AMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGL 314
Query: 616 DDAAKTLVQKI 626
+ L ++
Sbjct: 315 YEGLDWLSNQL 325
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 45.3 bits (107), Expect = 5e-05
Identities = 45/234 (19%), Positives = 88/234 (37%), Gaps = 33/234 (14%)
Query: 403 HNEPKPFTSPNSSSNGEKETAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLYKIL 462
H + S + S+ ++ S S+ + + S+ + +IL
Sbjct: 272 HVDYSWVISTENLSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLSNKE-----MRIL 326
Query: 463 VIGELGAGKTSIIKRY-----VHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAG 517
++G AGKT+I+ + V P T+G F ++ +++ + ++ +WD+ G
Sbjct: 327 MLGLDAAGKTTILYKLKLGQSVTT--IP----TVG--FNVETVTYKN---VKFNVWDVGG 375
Query: 518 QERFGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANK 577
Q++ + R YY G V D D +Q+L + + ++ ANK
Sbjct: 376 QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA---RQELHRIINDREMRDAIILIFANK 432
Query: 578 CDQPKEGIANNPAKIDEF-----IKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
D P A P +I E I++ N+ + A + + L
Sbjct: 433 QDLPD---AMKPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGLTWLTSNY 482
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 44.6 bits (106), Expect = 6e-05
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
IP V++ NK D E ++ + + SA DD + + I E
Sbjct: 141 IPFVVVVNKIDVLGE----KAEELKGLYESRYEAKVLLVSALQKKGFDD----IGKTISE 192
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 18/91 (19%)
Query: 538 VFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIK 597
+ D T D W + + LP PI ++ NK D E +
Sbjct: 90 MVDGTTTDAVDPAEIWPEFIA---RLPAKLPI--TVVRNKADITGE---------TLGMS 135
Query: 598 EHNFSGWFETSAKDNINIDDAAKTLVQKILE 628
E N SA+ +D L + +
Sbjct: 136 EVNGHALIRLSARTGEGVDV----LRNHLKQ 162
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 39.4 bits (93), Expect = 0.003
Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 33/159 (20%)
Query: 505 ETI----IRLQLWDIAGQ-------ERFG-NMTRVYYKEAVGAFIVFDVTRAATFDAVLK 552
E +L D AG E G +R+ EA + D+
Sbjct: 274 ECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL------ 327
Query: 553 WKQDLDAKVTLPDGNP-IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKD 611
+L L +P + +ANK D+ + I + + SA +
Sbjct: 328 -DDELTEIRELKAAHPAAKFLTVANKLDRAAN-----ADALIRAIADGTGTEVIGISALN 381
Query: 612 NINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNR 650
ID L Q + + +V +
Sbjct: 382 GDGIDT----LKQHMGD----LVKNLDKLHEASVLVTSL 412
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 39.0 bits (92), Expect = 0.005
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 16/104 (15%)
Query: 547 FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606
DA W D ++ P +L+ NK D ++ I N +
Sbjct: 311 IDAATGWTTG-DQEI-YEQVKHRPLILVMNKIDLVEK------QLITSLEYPENITQIVH 362
Query: 607 TSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNR 650
T+A ID L ILE ++ ++N+
Sbjct: 363 TAAAQKQGIDS----LETAILE----IVQTGKVQAADMDLAINQ 398
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 37.8 bits (88), Expect = 0.012
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 1/132 (0%)
Query: 340 SPNSSVMNQAPGDSDQDLDVTLKENTELPSAAAAASDVKSPSDLKKEILSITTPIVTEAG 399
++ + A D++ DL+ TL E + + ++ + I
Sbjct: 50 GWDNLSLKLALFDNNFDLESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQ 109
Query: 400 RKKHNEPKPFTSPNSSSNGEKETAASPNTSVVAGKTSITNGSSKEVSPYSKMPDKREFLY 459
R P S E A T KT++ K + + L
Sbjct: 110 RPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHL- 168
Query: 460 KILVIGELGAGK 471
+V+G + AGK
Sbjct: 169 SFVVLGHVDAGK 180
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 36.7 bits (86), Expect = 0.018
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 569 IPCVLLANKCDQ--PKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
P +L NK D K + + + NF SA+ +N+D + +
Sbjct: 117 APVILAVNKVDNVQEKADLL---PHLQFLASQMNFLDIVPISAETGLNVDT----IAAIV 169
Query: 627 LE 628
+
Sbjct: 170 RK 171
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 35.9 bits (83), Expect = 0.039
Identities = 25/189 (13%), Positives = 60/189 (31%)
Query: 150 KFKLLKKLSFSKKPKTKEKPVKKSSIEQVNERGVDVEFSTSAPLESTTSKKSPLKFKLLK 209
K L F +K +T EK + + + V E V + A ++ + +
Sbjct: 6 KRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAE 65
Query: 210 KLSFSKKPKTKEESSEDTMDGKNGGKSKKKGGKTKFKKIVPVEPSALASPNTIPDTPPTP 269
+ T++ + + + ++ + + + V +E L P + +P
Sbjct: 66 TFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSP 125
Query: 270 QNSKVFLEKEREVKEREGEQQEGGSVTSSPSITPTPPTQSDTSLLSTPAQSQDLDSATDN 329
+ + E V+ E E + + ++ PA+ +
Sbjct: 126 EEWQAEAETVEIVEAAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQ 185
Query: 330 DETYDTPMG 338
++ T G
Sbjct: 186 EQEKPTKEG 194
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 34.5 bits (80), Expect = 0.056
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 518 QERFGNMTRVYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ + + Y+K F++ D DL V IP ++
Sbjct: 88 RMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMM-VEWMKSLNIPFTIV 139
Query: 575 ANKCDQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILEN 629
K D+ K A + + ++ TS+ I + + + EN
Sbjct: 140 LTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKEN 195
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 34.7 bits (80), Expect = 0.092
Identities = 20/167 (11%), Positives = 56/167 (33%), Gaps = 14/167 (8%)
Query: 316 TPAQSQDLDSATDNDETYDTPMGTSPNSSVMNQAPGDSDQDLDVTLKENTELPSAAAAAS 375
T Q ++ SA +T +G + + D++ ++ + S+ A A
Sbjct: 27 TEEQEEEFRSAVA--TVRETLLGVPISEKEIADTVWYYYFDVEKSVNYLLQKASSKAGAK 84
Query: 376 DVKSPSDLKKEILSITTPIVTEAGRKKHNEPKPFTSPNSSSNGEKETAASPNTSVVAGKT 435
+ ++ K++ + + + +A + + + N E + +
Sbjct: 85 EKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTNGEVKMKNSSE 144
Query: 436 SITNGSSKEVSP-----------YSKMPDKREFLYKILVIGELGAGK 471
S K++ + + + + ++V G + +GK
Sbjct: 145 SDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKPVV-HLVVTGHVDSGK 190
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 34.0 bits (79), Expect = 0.13
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQ 624
+P +L+ NK D + + + + SA D + + L+
Sbjct: 118 VPILLVGNKLDA----AKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLA 169
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 33.3 bits (77), Expect = 0.14
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 518 QERFGNMTRVYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+E +G M Y + D+ A + D+ IP +++
Sbjct: 89 REAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDVQM-YEFLKYYGIPVIVI 140
Query: 575 ANKCDQPKEG-IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKI 626
A K D+ +G + + + + S++ D+A + + I
Sbjct: 141 ATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 33.5 bits (76), Expect = 0.17
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 441 SSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVL 500
+ M ++ +G G+GKT++ + + A + +D +K L
Sbjct: 2 RGSHHHHHHGMA-----SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKEL 56
Query: 501 SWDHETIIR--LQLWDIAGQERFGNMTRVY 528
++ +R + + +I + N V
Sbjct: 57 PYEPSIDVREFVTVEEIMREGYGPNGAIVE 86
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 33.6 bits (76), Expect = 0.17
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 454 KREFLYKILVIGELGAGKTSII------KRYVHQFFSPHYRATIGVDFALKVLSWDHETI 507
F + ++V+GE G GK+++I Y ++ P +R V + +
Sbjct: 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 63
Query: 508 -IRLQLWDIAG 517
+ L + D G
Sbjct: 64 QLLLTIVDTPG 74
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 33.2 bits (77), Expect = 0.22
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 569 IPCVLLANKCDQ--PKEGIANNPAKIDEFIKEH-NFSGWFETSAKDNINIDDAAKTLVQK 625
P +++ NK D+ P + + IDE K+H + SA N+D LV+
Sbjct: 123 KPVIVVINKIDKIGPAKNVL---PLIDEIHKKHPELTEIVPISALKGANLD----ELVKT 175
Query: 626 ILE 628
IL+
Sbjct: 176 ILK 178
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.9 bits (76), Expect = 0.35
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 16/104 (15%)
Query: 547 FDAVLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGWFE 606
DA ++ D K+ L +++ NK D ++ K +
Sbjct: 331 LDASSPLDEE-DRKI-LERIKNKRYLVVINKVDVVEKINEEEIKN-----KLGTDRHMVK 383
Query: 607 TSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNR 650
SA ++ L + I + N
Sbjct: 384 ISALKGEGLEK----LEESIYR-----ETQEIFERGSDSLITNL 418
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 31.5 bits (72), Expect = 0.50
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 11/122 (9%)
Query: 518 QERFGNMTRVYY----KEAVGAFIVFDVTRAATFDAVLKW----KQDLDAKVTLPDGNPI 569
QER + + K A +V D A + D++ L + + I
Sbjct: 65 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD-I 123
Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIK--EHNFSGWFETSAKDNINIDDAAKTLVQKIL 627
P ++ NK D+ K ++F + SAK NI+ + + I
Sbjct: 124 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183
Query: 628 EN 629
E
Sbjct: 184 ER 185
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 32.3 bits (72), Expect = 0.63
Identities = 24/184 (13%), Positives = 47/184 (25%), Gaps = 18/184 (9%)
Query: 215 KKPKTKEESSEDTMDGKNGGKSKKKGGKTKFKKIVPVEPSALASPNTIPDTPPTPQNSKV 274
KK ++ G G G + V +P+ L+ P + + +
Sbjct: 5 KKAAAAAAAAAAAATGTEAGPGTAGGSENG--SEVAAQPAGLSGPAEVGPGAVGERTPRK 62
Query: 275 FLEKEREVKEREGEQQEGGSVTSSPSITPTPPTQSDTSLLSTPAQSQ------------- 321
E + P++ P T +T + TP +
Sbjct: 63 KEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYRE 122
Query: 322 ---DLDSATDNDETYDTPMGTSPNSSVMNQAPGDSDQDLDVTLKENTELPSAAAAASDVK 378
L + ++++ + P + E E AA +
Sbjct: 123 MDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSR 182
Query: 379 SPSD 382
P D
Sbjct: 183 LPHD 186
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.0 bits (72), Expect = 0.71
Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 18/150 (12%)
Query: 460 KILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFA-LKVLSWDHETIIRLQLWDIAGQ 518
+ V GE G+GK+S I A GV ++ + H I + WD+ G
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 130
Query: 519 ERFGNMTRVYYKEAV---GAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLLA 575
Y ++ F + K D+D + +
Sbjct: 131 GSTNFPPDTYLEKMKFYEYDFFIIISATRFK-------KNDIDIAKAISMMK-KEFYFVR 182
Query: 576 NKCD------QPKEGIANNPAKIDEFIKEH 599
K D E + K+ + I+ +
Sbjct: 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLN 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.6 bits (71), Expect = 0.81
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHE---TIIRL 510
+ F + IL +GE G GK++++ + F L+ ++D + ++L
Sbjct: 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97
Query: 511 QLWDIAGQERFGN 523
+ G N
Sbjct: 98 TIVSTVGFGDQIN 110
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC;
2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B*
3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Length = 161
Score = 30.5 bits (68), Expect = 0.94
Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 5/142 (3%)
Query: 364 NTELPSAAAAASDVKSPSDLKKEILSITTPIVTEAGRKKHNEPKPFTSPNSSSNGEKETA 423
++ + + I + I+ EA K T P + + A
Sbjct: 21 SSAIEKLKGYFQTGELRVRAATTIAANAANIIKEAVAKSLLYS-DITRPGGNMYTTRRYA 79
Query: 424 ASPNTSVVAGKTSITNGSSKEVSPYSK--MPDKREFLYKILVIGELGAGKTSIIKRYVHQ 481
A + + + + S + + +E + V +K
Sbjct: 80 ACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEVTSG 139
Query: 482 FFSPHYRATIGV--DFALKVLS 501
P +G+ D+ LS
Sbjct: 140 LVGPDAGKEMGLYFDYICSGLS 161
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 31.3 bits (70), Expect = 0.96
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 454 KREFLYKILVIGELGAGKTSIIK 476
K+ F + ++V+GE G GK+++I
Sbjct: 14 KKGFEFTLMVVGESGLGKSTLIN 36
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS,
circadian rhythm proteins, transcription-activato; 2.27A
{Mus musculus}
Length = 361
Score = 30.7 bits (69), Expect = 1.5
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 51 SSQSDQSEKSPRKTSISSPEEKQKRRRFSFLSDKTEKLARKLSISSEKLDKKS 103
+ + D +K+ R + + E K+RR + ++L L ++ K+DK +
Sbjct: 2 AVEEDDKDKAKRVSR-NKSE---KKRR-DQFNVLIKELGSMLPGNARKMDKST 49
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.3 bits (68), Expect = 1.9
Identities = 29/247 (11%), Positives = 72/247 (29%), Gaps = 39/247 (15%)
Query: 433 GKTSITNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQ--FFSPHYRAT 490
+S + P + P + +I+++G+ GAGK++ + + F S +
Sbjct: 6 HHSSGRENLYFQGGPGRQEPRNSQL--RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKS 63
Query: 491 IGVDFALKVLSWDHETIIRLQLWDIAG--------QERFGNMTRVYYKEAVGAFIVFDVT 542
I + SW ++ + D G E + R + G + V
Sbjct: 64 ITKKCEKRSSSWKETELV---VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVV 120
Query: 543 RAATFDA----VLKWKQDLDAKVTLPDGNPIPCVLLANKCDQPKEGIANNPAKIDEFIKE 598
+ + + + +L+ + D + + ++++E
Sbjct: 121 PLGRYTEEEHKATEKILKM-----FGERARSFMILIFTRKDDLGDT------NLHDYLRE 169
Query: 599 HN--FSGWFETSAK-----DNINIDDAAKTLVQKILE--NDKVQANGDSHATSEAVFSLN 649
+ +N + ++L V+ N + T+
Sbjct: 170 APEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229
Query: 650 RNSQETK 656
Q+
Sbjct: 230 EEIQKQT 236
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 30.2 bits (69), Expect = 2.0
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW--FETSAKDNINIDDAAKTLVQKI 626
+ V++ NK D E +++ +I + +G+ + SAK ID+ L I
Sbjct: 111 VEPVIVFNKIDLLNE---EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFI 167
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 30.3 bits (69), Expect = 2.1
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 25 TLPGASS----LAVISNEKTNLKFG 45
T+ + AVI+NEKT K+G
Sbjct: 151 TISATGTEMNGNAVITNEKTKEKYG 175
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.6 bits (66), Expect = 2.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 460 KILVIGELGAGKTSIIKRYVHQ 481
KI++ GE G GKT+++K+ V +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER 23
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 29.9 bits (68), Expect = 2.2
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 13/126 (10%)
Query: 518 QERFGNMTRVYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ ++ Y ++ G ++ D+ D + + I ++L
Sbjct: 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQQM-IEWAVDSNIAVLVL 143
Query: 575 ANKCDQPKEG-IANNPAKIDEFIKEHNFSG-WFETSAKDNINIDDAAKTLVQKILENDKV 632
K D+ G + E + N S+ +D + L E V
Sbjct: 144 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPV 203
Query: 633 QANGDS 638
+ D
Sbjct: 204 EETQDG 209
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.8 bits (68), Expect = 2.5
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG--WFETSAKDNINIDDAAKTLVQKI 626
I ++ K D ++ + I + +++ G + TS+KD ++ D K
Sbjct: 118 IQPIICITKMDLIED--QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKT 175
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ;
2.0A {Escherichia coli} SCOP: e.22.1.2
Length = 408
Score = 29.9 bits (68), Expect = 2.9
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 25 TLPGASS----LAVISNEKTNLKFG 45
TLP S AVIS + T K
Sbjct: 159 TLPATGSESNAGAVISRKTTGDKQA 183
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 29.7 bits (67), Expect = 3.0
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 11/124 (8%)
Query: 378 KSPSDLKKEILSITTPIVTEAGRKKHNEPKPFTSPNSSSNGEKETAASPNTSVVAGKTSI 437
+ + R HNE K +++ E+ S TS +A
Sbjct: 11 GVDLGTENLYFQSMKNSGDQDSRSGHNEAKE--VWSNADLTERMPVKSKRTSALAVDIPA 68
Query: 438 TNGSSKEVSPYSKMPDKREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFAL 497
+K F Y + LG G+ + + AT G+ A
Sbjct: 69 PPAPFDHRIVTAKQGAVNSF-YTVSKTEILGGGRFGQVHKCEE-------TAT-GLKLAA 119
Query: 498 KVLS 501
K++
Sbjct: 120 KIIK 123
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.4 bits (65), Expect = 4.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 454 KREFLYKILVIGELGAGKTSIIKRYVHQFFSPHYR 488
KR F + ++V+GE G GK+++I
Sbjct: 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEY 61
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.4 bits (67), Expect = 4.5
Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 8/67 (11%)
Query: 570 PCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSGW--FETSAKDNINIDDAAKTLVQKIL 627
P ++ NK D + G SA + + L +
Sbjct: 271 PSLVALNKVDLL------EEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVR 324
Query: 628 ENDKVQA 634
+
Sbjct: 325 STPPPEM 331
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 28.4 bits (64), Expect = 4.7
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 461 ILVIGELGAGKTSIIK 476
+ + G+LGAGKT++ +
Sbjct: 36 VYLNGDLGAGKTTLTR 51
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.5 bits (63), Expect = 5.5
Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 30/162 (18%)
Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATIGVDFALKVLSWDHETIIRLQLWDIAGQER 520
+ ++G +GKT++I R + R + A D E D
Sbjct: 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGK------DSWKIYN 58
Query: 521 FGNMTRVYYKEAVGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGN---PIPCVLLANK 577
G + + D + + D + + +G +++ K
Sbjct: 59 SGADVVIASPVKLAFIRRVSEEEGNDLDWIYER-YLSDYDLVITEGFSKAGKDRIVVVKK 117
Query: 578 ----------------CDQPKEGI----ANNPAKIDEFIKEH 599
CD+ +G + +I EFI
Sbjct: 118 PEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSL 159
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 29.1 bits (64), Expect = 5.9
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 585 IANNPAKIDEFIKEHNFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGD 637
+ P ++ E ++ +F+ F + + D L+ + + + GD
Sbjct: 225 FKSRPGRLLEEGRKIDFNVLFSEPEPNTNDNDIWNVNLLSSLNDLGRRILTGD 277
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 28.8 bits (64), Expect = 6.8
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 250 PVEPSALASPNTIPDT------PPTPQNSKVFLEKEREVKEREGEQQEGGSVTSSPSITP 303
P P++ +P T P TP + + + ++ P+
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAA-PTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 304 TPPTQSDTSL 313
+L
Sbjct: 61 ATVAAGHATL 70
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 28.4 bits (64), Expect = 6.8
Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 18/115 (15%)
Query: 518 QERFGNMTRVYYKEA---VGAFIVFDVTRAATFDAVLKWKQDLDAKVTLPDGNPIPCVLL 574
+ + + Y + G ++ D R T + D + P L
Sbjct: 99 KAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------ELDRRM-IEWFAPTGKPIHSL 150
Query: 575 ANKCDQPKEG-IANNPAKIDEFIKEHNFSGW------FETSAKDNINIDDAAKTL 622
KCD+ N + + + +G+ SA +DDA +
Sbjct: 151 LTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALI 205
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.8 bits (65), Expect = 6.9
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 569 IPCVLLANKCDQPKEGIANNPAKIDEFIKEHNFSG--WFETSAKDNINIDDAAKTLVQKI 626
+ +++ NK D + ++E + + G S+ + + L +I
Sbjct: 161 VEPLIVLNKIDLLDD---EGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRI 217
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.4 bits (63), Expect = 9.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 461 ILVIGELGAGKTSIIKRYVHQFFSPHYRATI 491
++ + GAGK+ K + + + R I
Sbjct: 38 WTILAKPGAGKSFTAKMLLLREYMQGSRVII 68
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 28.3 bits (64), Expect = 9.0
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 600 NFSGWFETSAKDNINIDDAAKTLVQKILENDKVQANGDSHATSEAVFSLNR 650
+ + I+ ++ V IL+N V+A GD EA+ +
Sbjct: 13 TAEQQRQLLMRPAISASESITRTVNDILDN--VKARGD-----EALREYSA 56
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 9.6
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 145 KKSPLKFKLLKKLSFSKKPKTKEK-PVK--KSSIE 176
K++ LKKL S K + P K+++E
Sbjct: 19 KQA------LKKLQASLKLYADDSAPALAIKATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.123 0.335
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,976,433
Number of extensions: 515798
Number of successful extensions: 1332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 175
Length of query: 663
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 563
Effective length of database: 3,909,693
Effective search space: 2201157159
Effective search space used: 2201157159
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 60 (27.2 bits)