RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4097
(129 letters)
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 60.4 bits (146), Expect = 5e-12
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 3 PYVECINT-QGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVI 61
P +C + G CG CP G++G+GT C + C++ C + +T
Sbjct: 13 PGAQCSSFPDGSWSCGFCPVGFLGNGTHC-EDLDECALVPDICFSTSKVPRCVNTQPGFH 71
Query: 62 SCTCPPGMGGSGVGLMGCAYGMS-------GNPC--GGVTCEHGGICAPIG---DRGYRC 109
CPP G+ +G + NPC C C +G D Y+C
Sbjct: 72 CLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKC 131
Query: 110 QCEPGFTG 117
+C+ G+ G
Sbjct: 132 ECQTGYAG 139
Score = 53.5 bits (128), Expect = 1e-09
Identities = 23/116 (19%), Positives = 31/116 (26%), Gaps = 13/116 (11%)
Query: 3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTT------------GCSVQNGGCHPLATC 50
C+NTQ C CP + G+ C + CH A C
Sbjct: 59 KVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAEC 118
Query: 51 RETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRG 106
+ C C G G G+ + G P + C I D
Sbjct: 119 IYLGHFSDPMYKCECQTGYAGDGLICGEDSDL-DGWPNLNLVCATNATYHCIKDNC 173
Score = 25.4 bits (55), Expect = 7.4
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQ-CEPGFTG 117
+ C C G C+ D + C C GF G
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLG 36
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 40.9 bits (95), Expect = 3e-05
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 85 GNPCGGVTCEHGGICAPIGDRGYRCQCEP-GFTGE 118
NPC C++ G C G Y+C C GF GE
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGE 35
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 38.9 bits (90), Expect = 4e-05
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTC 65
C + +C G+ G C + C NGGC P A C + + C C
Sbjct: 23 ACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMDD---KKEVECKC 79
Query: 66 PPGMGGSGVGLMGCAYG 82
+ C+
Sbjct: 80 TKEGSEPLFEGVFCSSS 96
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 39.6 bits (92), Expect = 1e-04
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEP-GFTGES 119
NPC C+H GIC G Y+C C G++G +
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPN 37
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 35.0 bits (80), Expect = 0.001
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTG-CSVQNGGCHPLATCRETSDTVRSVI 61
C + +C + D C C +NGGC P A C+ I
Sbjct: 14 ENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECKMNDKN---EI 70
Query: 62 SCTCPPG 68
C C
Sbjct: 71 VCKCTKE 77
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 35.7 bits (83), Expect = 0.001
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 7 CINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCP 66
CINT G +C QC G+ G C C + C ATC + C C
Sbjct: 21 CINTLGSFEC-QCLQGYTG--PRCEIDVNECV--SNPCQNDATCLDQIGEF----QCICM 71
Query: 67 PGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
PG G ++ + C C H G C ++C+C GFTG
Sbjct: 72 PG-------YEGVHCEVNTDECASSPCLHNGRCLD-KINEFQCECPTGFTGH 115
Score = 29.5 bits (67), Expect = 0.19
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
CEH G C + CQC G+TG
Sbjct: 15 CEHAGKCINTLG-SFECQCLQGYTGP 39
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 35.1 bits (80), Expect = 0.001
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 3 PYVECINTQGYRKCGQCPHGWVGDGTTCRQGTTG-CSVQNGGCHPLATCRETSDTVRSV- 60
C R+ +C + +G C + C+ NGGC A C E
Sbjct: 14 QNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKK 73
Query: 61 ISCTCPPGMGG 71
I+C C
Sbjct: 74 ITCECTKPDSY 84
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 34.3 bits (79), Expect = 0.004
Identities = 19/68 (27%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 62 SCTCPPGMGGS-----GVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDR------GYRCQ 110
SC CP G S PC C +GG C GY C+
Sbjct: 24 SCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCK 83
Query: 111 CEPGFTGE 118
C GF G
Sbjct: 84 CPRGFNGI 91
Score = 30.8 bits (70), Expect = 0.067
Identities = 27/114 (23%), Positives = 37/114 (32%), Gaps = 23/114 (20%)
Query: 18 QCPHGWVGDGTTCRQGTTGCSVQNGG----------CHPLATCRETSDTVRSVI---SCT 64
+CP G+ C S + CH TC + C
Sbjct: 26 ECPDGFTDP--NCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCK 83
Query: 65 CPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
CP G G C + + N C C++GGIC + Y C+C F G
Sbjct: 84 CPRGFNGIH-----CQHNI--NECEVEPCKNGGICTDLVA-NYSCECPGEFMGR 129
Score = 30.8 bits (70), Expect = 0.069
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 87 PCGGVTCEHGGICAP-IGDRGYRCQCEPGFTGE 118
C CE+GGIC P + D + C+C GFT
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECPDGFTDP 34
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 34.2 bits (78), Expect = 0.007
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 66 PPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQC-EPGFTGE 118
+ +G GC C +C + G+C D G+ C C F+G
Sbjct: 168 SDALFCNGQIERGCEGP--STTCQEDSCSNQGVCLQQWD-GFSCDCSMTSFSGP 218
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 33.6 bits (76), Expect = 0.011
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTV 57
EC + C +C + G+G C NG + V
Sbjct: 20 ECRDYATGFCC-RCVANYTGNGRQCVA-EGSPQRVNGKVKGRIFVGSSQVPV 69
Score = 26.3 bits (57), Expect = 3.9
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 37 CSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHG 96
C+ C A CR+ + C C G+G + N G
Sbjct: 8 CANNRHQCSVHAECRDYATG----FCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVG 63
Query: 97 GICAPI 102
P+
Sbjct: 64 SSQVPV 69
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 32.8 bits (74), Expect = 0.023
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 18 QCPHGWVGDG--TTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVG 75
CP G++G C T G + + C C+ + C+C G G
Sbjct: 219 ICPPGFMGRTCEKACELHTFGRTCKER-CSGQEGCKSYVFCLPDPYGCSCATGWKGL-QC 276
Query: 76 LMGCAYGMSGNPCGGV-TCEHGGICAPIGDRGYRCQCEPGFTGE 118
C G G C +C +G +C DR C C PG+ G
Sbjct: 277 NEACHPGFYGPDCKLRCSCNNGEMC----DRFQGCLCSPGWQGL 316
Score = 25.4 bits (55), Expect = 6.0
Identities = 24/117 (20%), Positives = 30/117 (25%), Gaps = 24/117 (20%)
Query: 7 CINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCP 66
+ +C G C+ C C E + C CP
Sbjct: 177 FTSAFTRLIVRRCEAQKWGP---------ECNHLCTACMNNGVCHEDTGE------CICP 221
Query: 67 PGMGGSGVGLMGCAYGMSGNPC-----GGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
PG G C G C G C+ C P Y C C G+ G
Sbjct: 222 PGFMGRTC-EKACELHTFGRTCKERCSGQEGCKSYVFCLPD---PYGCSCATGWKGL 274
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 32.4 bits (73), Expect = 0.027
Identities = 28/117 (23%), Positives = 35/117 (29%), Gaps = 9/117 (7%)
Query: 6 ECINTQGYRKCGQ--CPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVI-S 62
C N G +CG C GW+G C + S Q C P S +
Sbjct: 447 RCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPS-QQDECSPREGQPVCSQRGECLCGQ 505
Query: 63 CTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
C C G G S G C G C+ C C+ +TG
Sbjct: 506 CVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC-----GDCLCDSDWTGYY 557
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 32.5 bits (73), Expect = 0.028
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 69 MGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQC-EPGFTGE 118
+ G + +G G C +GG+C+ D C C GF G+
Sbjct: 174 LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSV-VDDQAVCDCSRTGFRGK 223
Score = 32.1 bits (72), Expect = 0.035
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 66 PPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCE-PGFTGE 118
+ +G GC C +C + G+C D G+ C C F+G
Sbjct: 1000 SDALFCNGQIERGCEGP--STTCQEDSCSNQGVCLQQWD-GFSCDCSMTSFSGP 1050
Score = 27.1 bits (59), Expect = 2.2
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 67 PGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGF 115
S G+ + PC C++ G+C G Y C C
Sbjct: 601 MAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRD-GWNRYVCDCSGTG 648
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 31.7 bits (71), Expect = 0.047
Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 38 SVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGG 97
V GG P C + + + C C G C+ G C
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 98 ICAPIGDRG-YRCQCEPGF 115
G C+CE GF
Sbjct: 300 EHTLPSPEGATSCECEEGF 318
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 30.5 bits (69), Expect = 0.049
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 63 CTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAP-IGDRGYRCQCEPGFTGE 118
C C G + + C C +GG C + + CQC GF G+
Sbjct: 34 CWCNSGRAQC--------HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK 82
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 31.6 bits (72), Expect = 0.057
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 85 GNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
G+PC C H G C GY C C PG+ G +
Sbjct: 5 GSPCISQPCLHNGSCQD-SIWGYTCTCSPGYEGSN 38
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 30.8 bits (70), Expect = 0.068
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 15/112 (13%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTC 65
C+NT G C CP + + T ++G C+ R + +C+
Sbjct: 16 NCVNTPGSYIC-DCPPDFELNPT----RVGCVDTRSGNCYLDIRPRGDNGD----TACSN 66
Query: 66 PPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
G+G S S G CE + C GF
Sbjct: 67 EIGVGVSKASC-----CCSLGKAWGTPCEMCPAVNT-SEYKILCPGGEGFRP 112
Score = 27.3 bits (61), Expect = 1.1
Identities = 14/117 (11%), Positives = 26/117 (22%), Gaps = 21/117 (17%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTC 65
G C G +C P + + C
Sbjct: 54 RPRGDNGDTAC-SNEIGVGVSKASCCCSLGKAWGTPCEMCP--AVNTSEYKIL----CPG 106
Query: 66 PPGMGGSGVGLMG-----CAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
G + + ++ C C G C + ++C+C G+
Sbjct: 107 GEGFRPNPITVILEDIDECQELPGL--CQGGKCINT-------FGSFQCRCPTGYYL 154
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 31.0 bits (70), Expect = 0.071
Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 14/100 (14%)
Query: 19 CPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMG 78
G V + Q C + G ++ + I T +
Sbjct: 91 PLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFK-----T 145
Query: 79 CAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
C C +GG C + C+C GF G
Sbjct: 146 CQQAECPGG-----CRNGGFC----NERRICECPDGFHGP 176
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 30.8 bits (68), Expect = 0.093
Identities = 22/115 (19%), Positives = 30/115 (26%), Gaps = 7/115 (6%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTC 65
C C G+ TC Q C C + C+C
Sbjct: 66 PDPAQVNMYXC-GCIEGYTLXEDTC----VLDVCQYXNCGESGECIVEYLSEIQSAGCSC 120
Query: 66 PPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGESE 120
G + C C +C + + Y CQC GFT + E
Sbjct: 121 AIGXVPNPEDEXXCTX-TGETACQLXCNTDNEVCXNV-EGVYXCQCMEGFTFDXE 173
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 28.6 bits (64), Expect = 0.11
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 93 CEHGGICAPIGD-RGYRCQCEPGFTGE 118
C +GG+C I Y C C G++G+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGD 40
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.7 bits (67), Expect = 0.14
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 87 PCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
C +C G C Y C+C+PGF+G
Sbjct: 121 ACTNTSCSGHGECVE-TINNYTCKCDPGFSG 150
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 28.7 bits (65), Expect = 0.15
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTC 65
+CINT G +C +CP G++ G C T CSV N + TC+ + + CTC
Sbjct: 18 QCINTDGSYRC-ECPFGYILAGNEC-VDTDECSVGNPCGN--GTCK---NVIGG-FECTC 69
Query: 66 PPGMGGSG 73
G
Sbjct: 70 EEGFEPGP 77
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 29.7 bits (67), Expect = 0.17
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 16/113 (14%)
Query: 7 CINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCP 66
C + G C C G+ G CS+ NG C C E ++V C+C
Sbjct: 56 CKDGLGEYTC-TCLEGFEGKNCELFT-RKLCSLDNGDCD--QFCHEEQNSVV----CSCA 107
Query: 67 PGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
G + G + P G C + + G +S
Sbjct: 108 RGYTLA-------DNGKACIPTGPYPCGKQTLERRKRS-VAQATSSSGEAPDS 152
Score = 27.0 bits (60), Expect = 1.8
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 85 GNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
G+ C C++ G C G Y C C GF G
Sbjct: 42 GDQCETSPCQNQGKCKD-GLGEYTCTCLEGFEG 73
Score = 25.9 bits (57), Expect = 4.2
Identities = 16/112 (14%), Positives = 25/112 (22%), Gaps = 15/112 (13%)
Query: 7 CINTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCP 66
C + + + C C C++ +CTC
Sbjct: 17 CSYEEAREVFEDSDKTN--EFWNKYKDGDQCETSP--CQNQGKCKDGLGE----YTCTCL 68
Query: 67 PGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
G G C C + C + C C G+T
Sbjct: 69 EGFEGKN-----CELFTR-KLCSLDNGDCDQFCHEEQN-SVVCSCARGYTLA 113
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 29.2 bits (66), Expect = 0.22
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 10/60 (16%)
Query: 62 SCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGG---ICAPIGDRGYRCQCEPGFTGE 118
C C P G C + E+GG C+ C+C G++
Sbjct: 69 ICFCLPAFEGRN-----CETHK--DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLL 121
Score = 28.1 bits (63), Expect = 0.58
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 85 GNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
G+ C C++GG C + Y C C P F G
Sbjct: 47 GDQCASSPCQNGGSCKD-QLQSYICFCLPAFEG 78
Score = 25.0 bits (55), Expect = 7.3
Identities = 22/96 (22%), Positives = 28/96 (29%), Gaps = 18/96 (18%)
Query: 7 CINTQGYRKCGQCPHGWVGDGTTCRQGT---TGCSVQNGGCHPLATCRETSDTVRSVISC 63
C + C C + +G C C +NGGC C SD + SC
Sbjct: 61 CKDQLQSYIC-FCLPAF--EGRNCETHKDDQLICVNENGGCE--QYC---SDHTGTKRSC 112
Query: 64 TCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGIC 99
C G G+S P C I
Sbjct: 113 RCHEGYSLLA-----D--GVSCTPTVEYPCGKIPIL 141
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 29.7 bits (66), Expect = 0.25
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 6/105 (5%)
Query: 18 QCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDT-VRSVISCTCPPG-MGGSGVG 75
+C G++G C+ G C S C C + G +
Sbjct: 449 RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIY 508
Query: 76 LMGCAYG-MSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
C ++ G C G + C+C PGF G +
Sbjct: 509 GQYCECDTINCERYNGQVCGGPGRGLCFCGK---CRCHPGFEGSA 550
Score = 28.1 bits (62), Expect = 0.83
Identities = 28/120 (23%), Positives = 31/120 (25%), Gaps = 20/120 (16%)
Query: 7 CINTQGYRKCGQC--PHGWVGD----GTTCRQGTTGCSVQNGG-CHPLATCRETSDTVRS 59
+ G CGQC V G C T C NG C
Sbjct: 483 ICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGK--- 539
Query: 60 VISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
C C PG GS G V C G C R C+C G+
Sbjct: 540 ---CRCHPGFEGSACQCERTTEGC--LNPRRVECSGRGRC-----RCNVCECHSGYQLPL 589
Score = 25.4 bits (55), Expect = 8.0
Identities = 20/102 (19%), Positives = 25/102 (24%), Gaps = 24/102 (23%)
Query: 18 QCPHGWVGDGTTCRQGTTGCSVQNGG-CHPLATCRETSDTVRSVISCTCPPGMGGSGVGL 76
+C G+ G C + T GC C CR C C G
Sbjct: 541 RCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNV--------CECHSGYQLPL--- 589
Query: 77 MGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
C P C C + E G G+
Sbjct: 590 --C----QECPGCPSPCGKYISC------AECLKFEKGPFGK 619
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 28.5 bits (64), Expect = 0.28
Identities = 19/92 (20%), Positives = 23/92 (25%), Gaps = 11/92 (11%)
Query: 26 DGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSG 85
DG C C TC + + C C G G C +S
Sbjct: 5 DGDQC-LVLPLEHPCASLCCGHGTCIDGIGSFS----CDCRSGWEGRF-----CQREVSF 54
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
C C RC C PG+
Sbjct: 55 LNCSLDNGGCTHYCLE-EVGWRRCSCAPGYKL 85
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 27.5 bits (61), Expect = 0.35
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 93 CEHGGICAPIGDRG-YRCQCEPGFTGE 118
C H G+C I Y C C G+ GE
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGE 40
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 27.1 bits (61), Expect = 0.35
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 85 GNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
G+ C C +GG C Y C C GF G+
Sbjct: 3 GDQCESNPCLNGGSCKD-DINSYECWCPFGFEGK 35
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 28.9 bits (65), Expect = 0.36
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
C +GG C+ G Y+C C G++G
Sbjct: 140 CLNGGTCSNTGPDKYQCSCPEGYSGP 165
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.0 bits (64), Expect = 0.37
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 25/113 (22%)
Query: 6 ECINTQGYRKCGQCPHGWVGDG-TTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCT 64
C+ C +C H G C++ G G P+ +
Sbjct: 305 VCVYDNSKLTC-ECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGA----------ANA 353
Query: 65 CPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
C P + + N C++GG C RC C +TG
Sbjct: 354 CIPSISS-------IGTNVCDNELL--HCQNGGTC----HNNVRCLCPAAYTG 393
Score = 25.2 bits (54), Expect = 8.6
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 57 VRSVISCTCPPGMGGSGVGLMGCAYGMSG-NPCGGVTCEHGGICAPIGDRGYRCQCEPGF 115
+R + + + L Y +S G C + C+CE
Sbjct: 262 LRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNT 321
Query: 116 TGES 119
TG
Sbjct: 322 TGPD 325
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 28.4 bits (64), Expect = 0.41
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 61 ISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTG 117
+ G+ C C++ G C G Y C C GF G
Sbjct: 25 VFEDSDKTNEFWNKYK-------DGDQCETSPCQNQGKCKD-GLGEYTCTCLEGFEG 73
Score = 27.6 bits (62), Expect = 0.70
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 62 SCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
+CTC G G C C + C + C C G+T
Sbjct: 64 TCTCLEGFEGKN-----CELFTR-KLCSLDNGDCDQFCHEEQN-SVVCSCARGYTLA 113
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 28.6 bits (63), Expect = 0.57
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 18/86 (20%)
Query: 37 CSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHG 96
C+V NGGC C+ V+ CTC G + G C C
Sbjct: 6 CNVNNGGCA--QKCQMIRGAVQ----CTCHTGYRLTEDGRT-CQDVNE--------CAEE 50
Query: 97 GICAPI---GDRGYRCQCEPGFTGES 119
G C+ + ++C CE G+
Sbjct: 51 GYCSQGCTNSEGAFQCWCEAGYELRP 76
Score = 28.2 bits (62), Expect = 0.70
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 11/107 (10%)
Query: 7 CINTQGYRKCGQCPHGWV--GDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCT 64
C +G +C C G+ DG TC+ C+ + G C T E + C
Sbjct: 17 CQMIRGAVQC-TCHTGYRLTEDGRTCQDVNE-CA-EEGYCSQGCTNSEGAF------QCW 67
Query: 65 CPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQC 111
C G A G + + +
Sbjct: 68 CEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN 114
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 27.7 bits (61), Expect = 1.1
Identities = 20/115 (17%), Positives = 27/115 (23%), Gaps = 19/115 (16%)
Query: 14 RKCGQCPHGWVGDGTTCRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSG 73
+C C G+ G C C+PL T + C C + G
Sbjct: 418 ERCDVCKEGFYDLSAEDPYGCKSC-----ACNPLGTIPGGNPCDSETGYCYCKRLVTGQR 472
Query: 74 VGLMGCAYGMSGNPCGGVTCE---------HGGICAPIGDRGYRCQCEPGFTGES 119
C G C C+ +C C P G
Sbjct: 473 CDQ--CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDS---GQCSCLPHMIGRQ 522
Score = 27.7 bits (61), Expect = 1.1
Identities = 23/122 (18%), Positives = 32/122 (26%), Gaps = 13/122 (10%)
Query: 9 NTQGYRKCGQCPHGWVGDGTTCRQGTTGCSVQN---GGCHPLATCRETSDTVRSVISCTC 65
NT G R C QC + + C G C +D +I+ C
Sbjct: 351 NTMG-RNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQC 409
Query: 66 PPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGY---------RCQCEPGFT 116
+ G C G C P+G C C+ T
Sbjct: 410 RCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVT 469
Query: 117 GE 118
G+
Sbjct: 470 GQ 471
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 27.7 bits (61), Expect = 1.3
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 86 NPCGGVTCEHGG---ICAP-----IGDRGYRCQCEPGFT 116
N C T +GG +C P + C C G
Sbjct: 268 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 306
Score = 26.2 bits (57), Expect = 3.7
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 29 TCRQGTTGC---SVQNGGCHPLATCRETSDTVRSVISCTCPPGM 69
T +G C ++ NGGC L + +C CP GM
Sbjct: 262 TQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 305
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 27.2 bits (59), Expect = 1.4
Identities = 11/75 (14%), Positives = 16/75 (21%), Gaps = 7/75 (9%)
Query: 44 CHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIG 103
C + G + C +GG C
Sbjct: 109 CLGXQDG---VAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC---- 161
Query: 104 DRGYRCQCEPGFTGE 118
+ C+C GF G
Sbjct: 162 NERRICECPDGFHGP 176
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 27.5 bits (60), Expect = 1.4
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 92 TCEHGG---ICAPIGDRGYRCQCEPGFT 116
++GG IC GD RC C
Sbjct: 583 AQDNGGCSHICLVKGDGTTRCSCPMHLV 610
Score = 25.5 bits (55), Expect = 7.5
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 50 CRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRC 109
+TS R++I M G + C H +C + G+ C
Sbjct: 233 ANKTSGQNRTIIQGHLDYVMDILVFH-SSRQSGWNECASSNGHCSH--LCLAVPVGGFVC 289
Query: 110 QCEPGFT 116
C ++
Sbjct: 290 GCPAHYS 296
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 27.1 bits (60), Expect = 1.5
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 87 PCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
C ++C G C Y C C PGF G
Sbjct: 121 SCQDMSCSKQGECLE-TIGNYTCSCYPGFYGP 151
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 27.0 bits (59), Expect = 1.7
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 79 CAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFT 116
+ C H + +P Y+C C G
Sbjct: 263 QPNATNPCGIDNGGCSHLCLMSP-VKPFYQCACPTGVK 299
Score = 26.2 bits (57), Expect = 3.1
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 4/40 (10%)
Query: 30 CRQGTTGCSVQNGGCHPLATCRETSDTVRSVISCTCPPGM 69
T C + NGGC L C CP G+
Sbjct: 263 QPNATNPCGIDNGGCSHLCLMSPVKPF----YQCACPTGV 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.8
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 68 GMGGSG 73
G+ GSG
Sbjct: 157 GVLGSG 162
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 26.5 bits (59), Expect = 1.9
Identities = 10/76 (13%), Positives = 15/76 (19%), Gaps = 12/76 (15%)
Query: 44 CHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIG 103
C C++ ++ C C G G C
Sbjct: 56 CLNGGLCKDDINSYE----CWCQVGFEGKN-----CELDA--TCNIKNGRCKQFCKTGAD 104
Query: 104 DRGYRCQCEPGFTGES 119
C C G+
Sbjct: 105 S-KVLCSCTTGYRLAP 119
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 26.8 bits (58), Expect = 2.4
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 2/73 (2%)
Query: 37 CSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHG 96
C V G T + +SC P S L+ + G CG
Sbjct: 27 CRVAFGPKAVACTFAREHLDMCQALSCHTDPLDQSSCSRLLVPL--LDGTECGVEKWCSK 84
Query: 97 GICAPIGDRGYRC 109
G C + +
Sbjct: 85 GRCRSLVELTPIA 97
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 26.7 bits (58), Expect = 2.5
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 19/86 (22%)
Query: 37 CSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHG 96
C NGGC C + C CP G C+
Sbjct: 3 CLDNNGGCS--HVCNDLKIGYE----CLCPDGF----------QLVAQRRCEDIDECQDP 46
Query: 97 GICAPI---GDRGYRCQCEPGFTGES 119
C+ + + GY+CQCE GF +
Sbjct: 47 DTCSQLCVNLEGGYKCQCEEGFQLDP 72
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 25.3 bits (55), Expect = 2.6
Identities = 9/28 (32%), Positives = 9/28 (32%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEP 113
C V C G C RC C P
Sbjct: 2 ETCENVDCGPGKKCRMNKKNKPRCVCAP 29
>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells,
receptor, glycoprotein, lectin, signal-A transmembrane,
immune system receptor; 2.50A {Homo sapiens} PDB:
3cdg_K 3cii_H
Length = 120
Score = 25.8 bits (57), Expect = 2.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 14 RKCGQCPHGWVGDGTTC 30
R CG CP W+ +C
Sbjct: 2 RHCGHCPEEWITYSNSC 18
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 24.4 bits (53), Expect = 3.6
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
C G + ++ C C+ G+ G
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGA 41
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 26.1 bits (56), Expect = 3.7
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQC 111
PC C+HG +C + C C
Sbjct: 4 APCQNHHCKHGKVCELDENNTPMCVC 29
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 25.9 bits (57), Expect = 3.7
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 87 PCGGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
C +C G C I + Y C C+ G+ G
Sbjct: 121 SCQPWSCSGHGECVEIINN-YTCNCDVGYYGPQ 152
>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor)
(FC-epsilon-RII)...; C-type lectin, calcium-bound,
lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A
1t8d_A
Length = 175
Score = 25.9 bits (57), Expect = 3.8
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 2 TPYVECINTQGYRKCGQCPHGWVGDGTTC 30
+P +E + G+ C CP W+ C
Sbjct: 1 SPGMELQVSSGF-VCNTCPEKWINFQRKC 28
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 26.3 bits (57), Expect = 4.0
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 5/67 (7%)
Query: 50 CRETSDTVRSVISCTCPPGMGGSGVGLMGCAYGMSGNPCGGVTCEHGGICAPIGDRGYRC 109
+ S +I + GG C H +C +G RC
Sbjct: 547 VHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGG--CSH--LCLYRP-QGLRC 601
Query: 110 QCEPGFT 116
C GF
Sbjct: 602 ACPIGFE 608
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 25.7 bits (56), Expect = 5.0
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 105 RGYRCQCEPGFTGES 119
++C+C PG+
Sbjct: 395 VEFKCRCYPGWQAPW 409
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 24.0 bits (52), Expect = 5.1
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
C HG + + C C G+ G
Sbjct: 16 CFHGTCRFLVQEDKPACVCHSGYVGA 41
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 25.2 bits (55), Expect = 6.0
Identities = 22/117 (18%), Positives = 32/117 (27%), Gaps = 22/117 (18%)
Query: 18 QCPHGWVGDGTTCRQGTTGC-------SVQNGGCHPLATCRETSDTVRSVISCTCPPGMG 70
+C G+ C ++ C + C +T S C C PG
Sbjct: 22 RCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDC---WNTEGS-YDCVCSPGYE 77
Query: 71 GSGVGLMGCAYGMSGNPC--------GGVTCEHGGICAPIGDRGYRCQCEPGFTGES 119
S N C G C+ +C Y C+C PG+
Sbjct: 78 PVSGA--KTFKNESENTCQDVDECSSGQHQCDSSTVCFNT-VGSYSCRCRPGWKPRH 131
>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC;
2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A
Length = 184
Score = 25.2 bits (55), Expect = 6.6
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 5 VECINTQGYRKCGQCPHGWVGDGTTC 30
+ + T R C CP W C
Sbjct: 39 LTDLKTAFERLCRHCPKDWTFFQGNC 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 6.9
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 12/35 (34%)
Query: 106 GYRCQ-CEPGFTGESELLV-----------PLLSV 128
G RC P + +L P+LS+
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type
lectin-like domain, CTLD, carbohydrate; 1.5A {Mus
musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
Length = 142
Score = 24.7 bits (54), Expect = 7.3
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTC 30
+ C W+ G +C
Sbjct: 4 SHHHHHHGGFSQSCLPNWIMHGKSC 28
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 24.9 bits (54), Expect = 7.7
Identities = 3/25 (12%), Positives = 5/25 (20%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTC 30
+ + W G C
Sbjct: 54 KTFSDSSQHTGRGFEKYWFCYGIKC 78
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 23.7 bits (51), Expect = 7.8
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 93 CEHGGIC---APIGDRGYRCQCEPGFTGE 118
C + C Y C+C GF G+
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQ 44
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 23.2 bits (50), Expect = 8.3
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
C HG + C+CE G+TG
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGV 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.502
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,058,619
Number of extensions: 116287
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 332
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)