RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4097
(129 letters)
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 31.3 bits (71), Expect = 0.003
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 85 GNPCGGVTCEHGGICAPIGDRGYRCQC-EPGFTGE 118
NPC C++ G C G Y+C C GF GE
Sbjct: 1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGE 35
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 50
Score = 30.2 bits (68), Expect = 0.009
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
C G + ++ C C+ G+ G
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGA 41
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 29.8 bits (67), Expect = 0.011
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEP-GFTGE 118
NPC C+H GIC G Y+C C G++G
Sbjct: 3 NPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGP 36
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 29.6 bits (67), Expect = 0.014
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
+ C C +GG C + Y C C GF G+
Sbjct: 4 DQCESNPCLNGGSCKDDIN-SYECWCPFGFEGK 35
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 49
Score = 29.8 bits (67), Expect = 0.017
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
C HG + + C C G+ G
Sbjct: 15 CFHGTCRFLVQEDKPACVCHSGYVGA 40
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.9 bits (65), Expect = 0.023
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
N C C++ C ++C C PG+ G
Sbjct: 2 NECVSNPCQNDATCLDQIG-EFQCICMPGYEGV 33
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 29.5 bits (66), Expect = 0.024
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 86 NPCGGVTCEHGGICAPI-GDRGYRCQCEPGFTGE 118
C +GG+C I Y C C G++G+
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD 40
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 28.9 bits (65), Expect = 0.028
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 85 GNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
G+ C C++GG C Y C C P F G
Sbjct: 2 GDQCASSPCQNGGSCKDQLQ-SYICFCLPAFEGR 34
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 28.5 bits (64), Expect = 0.035
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
+ C C++ G C Y C C GF G+
Sbjct: 1 DQCETSPCQNQGKCKDGLG-EYTCTCLEGFEGK 32
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 28.3 bits (63), Expect = 0.043
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGF 115
+PC CE+ C P+ Y C C GF
Sbjct: 5 DPCFRANCEYQ--CQPLDQTSYLCVCAEGF 32
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 28.1 bits (63), Expect = 0.046
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
+ C C H G C + ++C+C GFTG
Sbjct: 1 DECASSPCLHNGRCLDKIN-EFQCECPTGFTGH 32
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 27.4 bits (61), Expect = 0.10
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
C HG + C+CE G+TG
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGV 39
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1)
{Malaria parasite (Plasmodium falciparum) [TaxId:
5833]}
Length = 51
Score = 27.2 bits (60), Expect = 0.12
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 37 CSVQNGGCHPLATCRETSDTVRSV-ISCTC 65
C+ NGGC A C E I+C C
Sbjct: 4 CNENNGGCDADAKCTEEDSGSNGKKITCEC 33
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 27.1 bits (60), Expect = 0.15
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 86 NPCGGVTCEHGGICAPI-GDRGYRCQCEPGFTGE 118
C H G+C I Y C C G+ GE
Sbjct: 5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGE 38
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 26.7 bits (59), Expect = 0.18
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
C +C G C + Y C+C+PGF+G
Sbjct: 2 AACTNTSCSGHGECVETIN-NYTCKCDPGFSGL 33
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 26.7 bits (59), Expect = 0.18
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 86 NPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
C ++C G C Y C C PGF G
Sbjct: 2 ASCQDMSCSKQGECLETIG-NYTCSCYPGFYGP 33
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 27.3 bits (60), Expect = 0.19
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 86 NPCGGVTCEHGGICAPI----GDRGYRCQCEPGFTGE 118
C +GG C + Y C+C+PGFTG
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA 43
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 26.2 bits (58), Expect = 0.26
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 93 CEHGGICAPIGDRGYRCQCEPGFTGE 118
CEH G C + CQC G+TG
Sbjct: 13 CEHAGKCIN-TLGSFECQCLQGYTGP 37
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 25.9 bits (57), Expect = 0.35
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTC 30
+CINT G +C +CP G++ G C
Sbjct: 18 QCINTDGSYRC-ECPFGYILAGNEC 41
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 25.6 bits (56), Expect = 0.50
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 3 PYVECINTQGYRKCGQCPHGWVGDGTTC 30
+ EC + C +C + G+G C
Sbjct: 11 VHAECRDYATGFCC-RCVANYTGNGRQC 37
Score = 22.9 bits (49), Expect = 4.2
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 37 CSVQNGGCHPLATCRETSDTVRSVISCTCPPGMGGSGV 74
C+ C A CR+ + C C G+G
Sbjct: 2 CANNRHQCSVHAECRDYATGFC----CRCVANYTGNGR 35
>d1b9wa2 g.3.11.4 (A:46-89) Merozoite surface protein 1 (MSP-1)
{Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]}
Length = 44
Score = 25.2 bits (55), Expect = 0.58
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 37 CSVQNGGCHPLATCRETSDTVRSVISCTCP 66
C +NGGC P A C+ ++ I C C
Sbjct: 4 CKDKNGGCAPEAECKMND---KNEIVCKCT 30
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 24.8 bits (54), Expect = 0.95
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 79 CAYGMSGNPCGGVTCEHGGICAPIGDRGYRCQCEPGFTGE 118
C +PC + C HG IG + C C G+ G
Sbjct: 2 CLVLPLEHPCASLCCGHGTCIDGIG--SFSCDCRSGWEGR 39
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 24.1 bits (52), Expect = 1.8
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 37 CSVQNGGCHPLATCRETSDTVRSVISCTCPPGM 69
++ NGGC L + +C CP GM
Sbjct: 7 TTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 39
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 23.7 bits (51), Expect = 2.6
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 88 CGGVTCEHGGICAP-IGDRGYRCQCEPGFTGE 118
C C +GG C + + CQC GF G+
Sbjct: 1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK 32
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 22.5 bits (48), Expect = 5.9
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 6 ECINTQGYRKCGQCPHGWVGDGTTCR 31
+C+NT G +C +C G+ +
Sbjct: 17 QCVNTPGDFEC-KCDEGYESGFMMMK 41
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 24.0 bits (51), Expect = 7.9
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 59 SVISCTCPPGMGGSGVGLMGCAYGM 83
S P G GG G +
Sbjct: 254 DGQSLGLPMGFGGPHFGFLATKKAF 278
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.142 0.502
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 538,504
Number of extensions: 25288
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 126
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)