BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4099
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KQ4|B Chain B, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|D Chain D, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|F Chain F, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 457
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 87/177 (49%), Gaps = 4/177 (2%)
Query: 2 AVNLSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFC 61
A++ +T C ++ GT TSP +P+ YP N C++ +TV GQ I ++FT F LE
Sbjct: 110 AISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAIG 169
Query: 62 NPTCGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKI 121
N TD+LE+RDGGYE SP LGI+ N P I S ++L++KF SD + GF
Sbjct: 170 NYY---TDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKSDQIDTR-SGFSA 225
Query: 122 TWDSAXXXXXXXXXXXXXXXXXXXXXXXXAYRTTCYWKIYVSQGSSITLWSLDVQLD 178
WD + + + CYW + S GS+ L D L+
Sbjct: 226 YWDGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLE 282
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
CG GT+ SP +P+ YP + C W + V I L F TF LE ++ C +
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHY---NCTN- 56
Query: 69 DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125
DYLEV D E+S LG YC K+ P +TSSG+ L + F +D D Y GF I +++
Sbjct: 57 DYLEVYDTDSETS--LGRYCGKSIPPSLTSSGNSLMLVFVTDSD-LAYEGFLINYEA 110
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
ST CGGN + GT SP YP PY + C W L G L F F LE + P C
Sbjct: 231 STGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHH---PNC 287
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
DYL V DG +S L C P I SSG ++IK +D+ + + GFK +
Sbjct: 288 -TLDYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQ-QGRGFKAEY 343
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGG 77
G L S YP+PY N C WT+ G + F F LE + C TDYLE+ DG
Sbjct: 358 GILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHHI---NC-STDYLELYDG- 412
Query: 78 YESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
Q+G YC + P +++ +L + +D + GF++ W
Sbjct: 413 ---PRQMGRYCGVDLPPPGSTTSSKLQVLLLTDGVGRREKGFQMQW 455
>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 579
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 9 CGGNFYSPE-GTLTSPQYPDPYPPNMLCVWTLTVPR-GQQIRLNFT-TFQLERYFCNPTC 65
CGG S + G +TSP YP YP + C W + P Q+I LNF F++E++ C
Sbjct: 6 CGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHDCK--- 62
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWD 124
D++E+RDG ES+ LG +C P I SSG LYIKF SD R + GF + ++
Sbjct: 63 --YDFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYAR-QGAGFSLRYE 118
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
S C NF SP GT+ SP +P+ YP N+ C +T+ +I L F F LE
Sbjct: 124 SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGE 183
Query: 66 GDT--DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSD 110
GD D+L++ DG P +G YC P E+ SS L + F +D
Sbjct: 184 GDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTD 230
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCG-- 66
C N+ +P G + SP +P+ YP ++ C + + P+ +I L F +F LE+ NP G
Sbjct: 129 CSQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQD-SNPPGGMF 187
Query: 67 -DTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSD 110
D LE+ DG E P +G YC + PG I SS L + F++D
Sbjct: 188 CRYDRLEIWDGFPEVGPHIGRYCGQKTPGRIRSSSGVLSMVFYTD 232
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 6 STTCGGNF-YSPEGTLTSPQYPDPYPPNMLCVWTLTVPRG-QQIRLNFT-TFQLERYFCN 62
S CGG G LTSP YP Y P+ C W + P Q+I +NF F LE C
Sbjct: 6 SDKCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLEDRDCK 65
Query: 63 PTCGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSD 110
DY+EV DG E G +C K P + SSG L+IKF SD
Sbjct: 66 -----YDYVEVIDGENEGGRLWGKFCGKIAPSPVVSSGPFLFIKFVSD 108
>pdb|2WNO|A Chain A, X-Ray Structure Of Cub_c Domain From Tsg-6
Length = 149
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
+ CGG F P+ SP +P+ Y N +C W + + GQ+I L+F F LE +P C
Sbjct: 4 AKECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLED---DPGC 60
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
DY+E+ D + +G YC P +I S+G+ + +KF S D GF+I +
Sbjct: 61 L-ADYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLS-DASVTAGGFQIKY 116
>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-1
Length = 450
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCG-- 66
C N+ +P G + SP +P+ YP ++ C + + P+ +I L F +F LE NP G
Sbjct: 11 CSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD-SNPPGGMF 69
Query: 67 -DTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSD 110
D LE+ DG + P +G YC + PG I SS L + F++D
Sbjct: 70 CRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTD 114
>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
pdb|2QQO|B Chain B, Crystal Structure Of The A2b1b2 Domains From Human
Neuropilin-2
Length = 460
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
S C NF SP GT+ SP +P+ YP N+ C +T+ +I L F F LE
Sbjct: 5 SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGE 64
Query: 66 GDT--DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSD 110
GD D+L++ DG P +G YC P E+ SS L + F +D
Sbjct: 65 GDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTD 111
>pdb|3POB|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain In Complex With
The Collagen- Like Domain Of Mbl
pdb|3POE|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|B Chain B, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|C Chain C, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POI|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POI|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POJ|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
pdb|3POJ|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
Length = 115
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 9 CGGNFYSPE-GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNPTCG 66
C GN ++ GT+TSP YP+PYP + C +T+ + G + L F F +E + P
Sbjct: 4 CSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPC-- 61
Query: 67 DTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDD 111
DY++++ G S G +C + P I++ H + I F SD+
Sbjct: 62 PYDYIKIKAG----SKVWGPFCGEKSPEPISTQSHSIQILFRSDN 102
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 9/120 (7%)
Query: 9 CGGNFYSPE-GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNPTCG 66
C N ++ G +TSP +P+PYP + C++T+ + G + L F F +E + P
Sbjct: 166 CSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPC-- 223
Query: 67 DTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSA 126
DY++++ G LG +C + P I++ H + I F SD+ + G+++++ +A
Sbjct: 224 PYDYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILFHSDNSG-ENRGWRLSYRAA 278
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLE-RYFCNPTCGDTDYLEVRDG 76
G + SP YPD YP + W +TVP G +I+L F F LE Y C + DY++V
Sbjct: 10 GQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLC-----EYDYVKV--- 61
Query: 77 GYESSPQ-LGIYCCKN------HPGE--ITSSGHQLYIKF---FSDDDRF 114
E+ Q L +C + PG+ + S G + I F FS+++RF
Sbjct: 62 --ETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERF 109
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 9/120 (7%)
Query: 9 CGGNFYSPE-GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNPTCG 66
C N ++ G +TSP +P+PYP + C++T+ + G + L F F +E + P
Sbjct: 166 CSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPC-- 223
Query: 67 DTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSA 126
DY++++ G LG +C + P I++ H + I F SD+ + G+++++ +A
Sbjct: 224 PYDYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILFHSDNSG-ENRGWRLSYRAA 278
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLE-RYFCNPTCGDTDYLEVRDG 76
G + SP YPD YP + W +TVP G +I+L F F LE Y C + DY++V
Sbjct: 10 GQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLC-----EYDYVKV--- 61
Query: 77 GYESSPQ-LGIYCCKN------HPGE--ITSSGHQLYIKF---FSDDDRF 114
E+ Q L +C + PG+ + S G + I F FS+++RF
Sbjct: 62 --ETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERF 109
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 6 STTCGGN-FYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNP 63
S C G F G L+SP+YP PYP C + + + G I L+F +F +E +
Sbjct: 162 SALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH-PEA 220
Query: 64 TCGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
C D L+++ E P +C K P I + +++ I F +D+ + G+KI +
Sbjct: 221 QC-PYDSLKIQTDKREYGP----FCGKTLPPRIETDSNKVTITFTTDESG-NHTGWKIHY 274
Query: 124 DS 125
S
Sbjct: 275 TS 276
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLE 57
G L SP +P+ Y + WTLT P G ++RL FT F LE
Sbjct: 9 GRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLE 48
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLE 57
G L SP +P Y + WTLT P G ++RL FT F LE
Sbjct: 13 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLE 52
>pdb|1SFP|A Chain A, Crystal Structure Of Acidic Seminal Fluid Protein (Asfp)
At 1.9 A Resolution: A Bovine Polypeptide From The
Spermadhesin Family
Length = 114
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
+T CGG G + + Y P CVWT+ +P +R++ QL CN
Sbjct: 7 NTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN---CN--- 55
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDR 113
+ LE+ D G SP LG C+ + SSG + +K+ + +
Sbjct: 56 --KESLEIID-GLPGSPVLG-KICEGSLMDYRSSGSIMTVKYIREPEH 99
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLE 57
G + SP YP YP + W + VP G I L FT +E
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIE 45
>pdb|1SPP|B Chain B, The Crystal Structures Of Two Members Of The
Spermadhesin Family Reveal The Folding Of The Cub
Domain
Length = 116
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 34 LCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCC 89
LC WT+ + Q++R+ + N CG +Y+EV D G S P G C
Sbjct: 29 LCTWTILMKPDQKVRMAIP-------YLNLACGK-EYVEVFD-GLLSGPSYGKLCA 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,887,371
Number of Sequences: 62578
Number of extensions: 225892
Number of successful extensions: 367
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 25
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)