Query psy4099
Match_columns 190
No_of_seqs 195 out of 1476
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 16:55:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00431 CUB: CUB domain CUB d 99.9 2.2E-26 4.8E-31 150.3 12.7 110 9-123 1-110 (110)
2 cd00041 CUB CUB domain; extrac 99.9 3.2E-25 6.8E-30 145.5 14.9 112 9-125 1-113 (113)
3 smart00042 CUB Domain first fo 99.9 2.5E-23 5.3E-28 134.2 12.9 101 18-123 1-102 (102)
4 KOG4586|consensus 99.9 4E-22 8.7E-27 127.3 8.5 108 14-126 46-154 (156)
5 KOG4292|consensus 99.8 4.8E-20 1E-24 141.8 8.9 175 8-188 168-350 (454)
6 PF00431 CUB: CUB domain CUB d 99.6 7.7E-16 1.7E-20 100.2 6.8 59 130-188 1-59 (110)
7 KOG4292|consensus 99.6 6.6E-15 1.4E-19 113.7 9.3 160 6-170 289-449 (454)
8 cd00041 CUB CUB domain; extrac 99.6 4.4E-15 9.6E-20 97.0 7.0 59 130-188 1-60 (113)
9 smart00042 CUB Domain first fo 99.5 6.2E-14 1.3E-18 90.0 6.0 50 139-188 1-50 (102)
10 KOG4586|consensus 98.6 2.5E-07 5.4E-12 59.9 5.9 52 136-187 47-99 (156)
11 PF05428 CRF-BP: Corticotropin 98.3 2.6E-05 5.6E-10 57.9 11.8 132 30-179 76-224 (311)
12 PF02408 CUB_2: CUB-like domai 97.2 0.017 3.8E-07 38.0 10.9 81 28-124 37-117 (120)
13 PF02408 CUB_2: CUB-like domai 94.2 0.094 2E-06 34.5 4.0 26 149-174 37-62 (120)
14 PF13978 DUF4223: Protein of u 45.5 12 0.00025 20.4 0.9 9 181-189 29-37 (56)
15 PF05428 CRF-BP: Corticotropin 45.1 1.4E+02 0.0031 23.1 9.9 102 4-113 178-291 (311)
16 PF01186 Lysyl_oxidase: Lysyl 33.8 48 0.001 24.1 2.7 38 142-179 135-176 (205)
17 smart00166 UBX Domain present 32.6 90 0.002 18.5 3.5 21 33-53 3-23 (80)
18 KOG2689|consensus 31.0 82 0.0018 24.0 3.6 33 142-174 195-229 (290)
19 PF08043 Xin: Xin repeat; Int 26.6 60 0.0013 13.1 1.4 11 154-164 4-14 (16)
20 KOG2689|consensus 26.4 1.2E+02 0.0026 23.2 3.8 22 32-53 208-229 (290)
21 PF05547 Peptidase_M6: Immune 26.2 4.1E+02 0.0089 23.3 7.3 29 38-74 359-388 (645)
22 PF02083 Urotensin_II: Urotens 24.5 22 0.00048 13.1 -0.1 7 32-38 3-9 (12)
23 cd01770 p47_UBX p47-like ubiqu 22.7 1.4E+02 0.003 17.8 3.0 20 155-174 4-23 (79)
24 cd01767 UBX UBX (ubiquitin reg 22.5 1.5E+02 0.0032 17.4 3.1 19 155-173 2-20 (77)
25 cd01772 SAKS1_UBX SAKS1-like U 21.5 1.7E+02 0.0036 17.4 3.2 21 154-174 3-23 (79)
26 PF06473 FGF-BP1: FGF binding 21.1 1.9E+02 0.0041 21.5 4.0 28 17-52 43-70 (231)
No 1
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.94 E-value=2.2e-26 Score=150.31 Aligned_cols=110 Identities=47% Similarity=0.926 Sum_probs=101.1
Q ss_pred CCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeeec
Q psy4099 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYC 88 (190)
Q Consensus 9 Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~c 88 (190)
||+.++..+|.|+||+||..|+.+.+|.|.|+++++.+|+|+|..|+|+. ...|. .|+|.|+++.......++++|
T Consensus 1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~---~~~c~-~d~l~v~~g~~~~~~~~~~~c 76 (110)
T PF00431_consen 1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLES---SDSCC-QDYLEVYDGNDESSPLLGRFC 76 (110)
T ss_dssp SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB-----TTTST-SSEEEEESSSSTTSEEEEEES
T ss_pred CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeecccccccee---eeeec-ccceeEEeeccccceeeeecc
Confidence 99999999999999999999999999999999999999999999999998 77798 999999999998888899999
Q ss_pred CCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEE
Q psy4099 89 CKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123 (190)
Q Consensus 89 g~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y 123 (190)
|...+..+++.++.|+|+|+++... ...||+|+|
T Consensus 77 g~~~~~~i~s~~~~l~i~f~s~~~~-~~~gF~~~y 110 (110)
T PF00431_consen 77 GSSPPPSIISSSNSLFIRFHSDSSN-SSRGFKATY 110 (110)
T ss_dssp SSSCCEEEEESSSEEEEEEEESSSS-TTSEEEEEE
T ss_pred CCcCCccEEECCCEEEEEEEECCCC-CCccEEEEC
Confidence 9878889999999999999999999 999999987
No 2
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.94 E-value=3.2e-25 Score=145.47 Aligned_cols=112 Identities=46% Similarity=0.913 Sum_probs=104.8
Q ss_pred CCceEecC-ceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeee
Q psy4099 9 CGGNFYSP-EGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIY 87 (190)
Q Consensus 9 Cg~~~~~~-~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~ 87 (190)
|++.+... .|.|.||+||..|+++.+|.|.|++++|++|.|+|..|+|+. ...|. .|+|.|+++.......+.++
T Consensus 1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~---~~~C~-~d~l~i~~g~~~~~~~~~~~ 76 (113)
T cd00041 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLES---SPNCS-YDYLEIYDGPSTSSPLLGRF 76 (113)
T ss_pred CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCccccc---CCCCC-CcEEEEEcCCCCccccceee
Confidence 89999988 999999999999999999999999999999999999999998 68899 99999999987666778999
Q ss_pred cCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEec
Q psy4099 88 CCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125 (190)
Q Consensus 88 cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~ 125 (190)
||...+..++|.++.|.|+|+++... ...||++.|++
T Consensus 77 Cg~~~~~~~~s~~~~~~i~f~s~~~~-~~~GF~~~y~~ 113 (113)
T cd00041 77 CGSTLPPPIISSGNSLTVRFRSDSSV-TGRGFKATYSA 113 (113)
T ss_pred ECCCCCCCEEecCCEEEEEEEeCCCC-CCCCEEEEEEC
Confidence 99988889999999999999999988 89999999974
No 3
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.91 E-value=2.5e-23 Score=134.17 Aligned_cols=101 Identities=45% Similarity=0.852 Sum_probs=91.3
Q ss_pred eEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeeecCCCCCC-ce
Q psy4099 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCCKNHPG-EI 96 (190)
Q Consensus 18 G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~cg~~~~~-~~ 96 (190)
|.|+||+||..|+.+.+|.|.|++++|.+|.|+|..|+|+. ...|. .|+|+|++|.......+.++||...+. .+
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~---~~~C~-~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~ 76 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLES---SDNCE-YDYVEIYDGPSASSPLLGRFCGSELPPPVI 76 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccC---CCCee-EeEEEEEeCCCCCCceeEEEecCcCCCCeE
Confidence 78999999999999999999999999999999999999998 77898 999999998876667788999987655 56
Q ss_pred EeeCCEEEEEEEeCCCCCccCCceEEE
Q psy4099 97 TSSGHQLYIKFFSDDDRFKYPGFKITW 123 (190)
Q Consensus 97 ~s~~~~~~i~f~s~~~~~~~~gf~~~y 123 (190)
.+.++.|.|+|+++... ...||+++|
T Consensus 77 ~s~~n~~~i~f~s~~~~-~~~GF~~~y 102 (102)
T smart00042 77 SSSSNSLTVTFVSDSSV-QKRGFSARY 102 (102)
T ss_pred EcCCCEEEEEEEeCCCC-CCCCeEEEC
Confidence 67799999999999888 789999986
No 4
>KOG4586|consensus
Probab=99.87 E-value=4e-22 Score=127.26 Aligned_cols=108 Identities=33% Similarity=0.676 Sum_probs=101.8
Q ss_pred ecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-EeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeeecCCCC
Q psy4099 14 YSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCCKNH 92 (190)
Q Consensus 14 ~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~-~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~cg~~~ 92 (190)
++..++++||+||+.|+++.+|...|.+.+-+-|++.|. .|.+|+ +..|. +|.++|.||.-..++++++|||+..
T Consensus 46 ~~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEp---s~EC~-fD~iEvrDGpfGFSPlI~rfCG~~n 121 (156)
T KOG4586|consen 46 LQNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEP---SYECP-FDFIEVRDGPFGFSPLIARFCGDRN 121 (156)
T ss_pred ecccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecc---cccCC-CCcccccCCCcCccHHHHHHhccCC
Confidence 456789999999999999999999999999999999994 789999 89999 9999999999999999999999999
Q ss_pred CCceEeeCCEEEEEEEeCCCCCccCCceEEEecc
Q psy4099 93 PGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSA 126 (190)
Q Consensus 93 ~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~ 126 (190)
|+.+.|.+..|||+|.+|... ...||.++|..+
T Consensus 122 Pp~Irs~grFlWIkF~sD~el-e~~gfsa~y~~~ 154 (156)
T KOG4586|consen 122 PPEIRSVGRFLWIKFRSDSEL-EYQGFSAEYAIV 154 (156)
T ss_pred ChhheecCcEEEEEEcccchh-hhcccceeeecc
Confidence 999999999999999999888 899999999765
No 5
>KOG4292|consensus
Probab=99.82 E-value=4.8e-20 Score=141.77 Aligned_cols=175 Identities=20% Similarity=0.354 Sum_probs=126.3
Q ss_pred CCCceEecC-ceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCC-ce-
Q psy4099 8 TCGGNFYSP-EGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSP-QL- 84 (190)
Q Consensus 8 ~Cg~~~~~~-~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~-~~- 84 (190)
.|+.++... +|.+.+|++|..|....-|.|.|.+++++++.|++..+++.+. ...|. ...|.+..+..+... ..
T Consensus 168 ~~~~t~~~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt--~n~c~-s~~L~i~m~~~s~~~~~~~ 244 (454)
T KOG4292|consen 168 TYNITFTTQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPT--INECE-SASLTIFMSYKSEKYGGHG 244 (454)
T ss_pred ccceeecCcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCcc--ccccc-ceeEEEEeccCCccccccc
Confidence 344566544 5999999999999999999999999999999999999988763 45788 899999887543111 11
Q ss_pred ---eeecCCCC--CCceEeeCCEEEEEEEeCCCCCccCCceEEEecccCCCCCeeecCeeeEECCCCCCCCCCCcceEEE
Q psy4099 85 ---GIYCCKNH--PGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWK 159 (190)
Q Consensus 85 ---~~~cg~~~--~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~ 159 (190)
-.+|+... .+...+.-..+.+.|.+.... +..+ -.....-..|++++....|.+.||+||..|+++++|+|+
T Consensus 245 ~~~~~~~~~~as~~~~~~~s~s~s~~i~~S~~~~-r~s~--~~~~~~~~~C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~ 321 (454)
T KOG4292|consen 245 NSRPQECGRNASCGSDFYSSMSTSKVIFSSGNLN-RRSR--TNETYQISDCNRTYHGKFGNLTSPGYPQNYPNNLDCTTH 321 (454)
T ss_pred CcChhhccccccccchhhhhhhhhhhhccccccc-cccc--cCCCccccccccceecceeEEcCCCCcccCCCCCcceEE
Confidence 12222111 011111222222333332222 2222 122222357999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 160 IYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 160 i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
+.++.|+.|.|.|+.|-++.+..|.+||+
T Consensus 322 l~~~~g~~l~v~fh~~~~~~s~~C~~d~l 350 (454)
T KOG4292|consen 322 LTVPGGHTLVVFFHEFSIENSRECINDYL 350 (454)
T ss_pred EEcCCCCEEEEEeecccchhhhhhccceE
Confidence 99999999999999999999999999975
No 6
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.63 E-value=7.7e-16 Score=100.21 Aligned_cols=59 Identities=37% Similarity=0.660 Sum_probs=52.3
Q ss_pred CCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 130 CGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 130 C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
||+.+.+..|.|.||+||..|+++.+|.|.|+++++++|+|+|.+|+|+....|..|+.
T Consensus 1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~~c~~d~l 59 (110)
T PF00431_consen 1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSDSCCQDYL 59 (110)
T ss_dssp SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TTTSTSSEE
T ss_pred CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceeeeeecccce
Confidence 88999999999999999999999999999999999999999999999999888988853
No 7
>KOG4292|consensus
Probab=99.59 E-value=6.6e-15 Score=113.74 Aligned_cols=160 Identities=27% Similarity=0.376 Sum_probs=121.5
Q ss_pred CCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy4099 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLG 85 (190)
Q Consensus 6 ~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~ 85 (190)
...|+++++...|.++||+||+.|+.+++|+|.+.++.++.+.+.|..+-++. +..|. +|++..+.+......+.+
T Consensus 289 ~~~C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~---s~~C~-~d~l~~r~~~~~~~~l~g 364 (454)
T KOG4292|consen 289 ISDCNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIEN---SRECI-NDYLVLRNGNSGNGPLLG 364 (454)
T ss_pred ccccccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchh---hhhhc-cceEEeccCCCCCCCccC
Confidence 35799999999999999999999999999999999999999999998888888 89999 999999988888778888
Q ss_pred eecCCCCCCceEeeCC-EEEEEEEeCCCCCccCCceEEEecccCCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCC
Q psy4099 86 IYCCKNHPGEITSSGH-QLYIKFFSDDDRFKYPGFKITWDSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQ 164 (190)
Q Consensus 86 ~~cg~~~~~~~~s~~~-~~~i~f~s~~~~~~~~gf~~~y~~~~~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~ 164 (190)
+ |+...++.+++..+ .+.+...+.........+.....-....+++......|.-..++|+.-+|+..+|.|....+.
T Consensus 365 ~-~~~~ls~~~~ss~s~g~~l~~~~~~i~~~~~~~~~~~~~~~e~~~~~s~~~~g~~~~~g~~~~~pn~~dc~~~~~d~~ 443 (454)
T KOG4292|consen 365 P-HGAGLSPELVSSASLGLSLIDLSMGVVVGEDSFRILPRNPTELPGGPSASENGKGKNMGYNSITPNRDDCDDLELDED 443 (454)
T ss_pred c-ccCCCCccccccccccceeeeeceeeEeecccccccccCcccCCCCccccccCCCCCCCCcccCCCcccccceecccc
Confidence 8 55555554444444 344443333222122333333333334566666667899999999999999999999998887
Q ss_pred CCEEEE
Q psy4099 165 GSSITL 170 (190)
Q Consensus 165 ~~~i~l 170 (190)
+.-+.+
T Consensus 444 ~~~~~i 449 (454)
T KOG4292|consen 444 QLDADI 449 (454)
T ss_pred ccccCC
Confidence 654443
No 8
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.59 E-value=4.4e-15 Score=97.03 Aligned_cols=59 Identities=39% Similarity=0.646 Sum_probs=55.7
Q ss_pred CCCeeecC-eeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 130 CGGILTGS-SGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 130 C~~~~~~~-~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
|++.+... .|.|.||+||..|+++.+|.|.|++++|++|+|+|.+|+|+....|..|+.
T Consensus 1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l 60 (113)
T cd00041 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYL 60 (113)
T ss_pred CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCCCCCCcEE
Confidence 88888888 999999999999999999999999999999999999999998889998854
No 9
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.49 E-value=6.2e-14 Score=90.04 Aligned_cols=50 Identities=32% Similarity=0.565 Sum_probs=47.2
Q ss_pred eeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 139 GSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 139 g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
|.|.||+||..||++.+|.|.|++++|++|+|+|..|+|+....|..|+.
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l 50 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYV 50 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCCCeeEeEE
Confidence 78999999999999999999999999999999999999999888988853
No 10
>KOG4586|consensus
Probab=98.55 E-value=2.5e-07 Score=59.89 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=48.2
Q ss_pred cCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeE-EeeCCCCCCCccc
Q psy4099 136 GSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLD-VQLDCNKLLASDL 187 (190)
Q Consensus 136 ~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~~~C~~d~ 187 (190)
...+.++|||||..||++.+|...|++.+-+-|.+.|.+ |.||.+-.|.+|.
T Consensus 47 ~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~EC~fD~ 99 (156)
T KOG4586|consen 47 QNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSYECPFDF 99 (156)
T ss_pred cccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecccccCCCCc
Confidence 456789999999999999999999999999999999987 8999999999994
No 11
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=98.29 E-value=2.6e-05 Score=57.92 Aligned_cols=132 Identities=20% Similarity=0.308 Sum_probs=98.5
Q ss_pred CCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCC--------------ceeeecCCCCCC-
Q psy4099 30 PPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSP--------------QLGIYCCKNHPG- 94 (190)
Q Consensus 30 ~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~--------------~~~~~cg~~~~~- 94 (190)
.+...|--.+-+.|++.|.|+|+.+++. |...|.|.|.||..-.+. ....||++....
T Consensus 76 ~pq~~Ca~y~iaePd~~IeI~~~~vdid-------C~~G~ll~v~DGW~LnGe~FPs~~DHplpl~eR~~efC~~~~~~~ 148 (311)
T PF05428_consen 76 RPQLVCAAYFIAEPDELIEIEFDHVDID-------CEGGDLLKVFDGWELNGEKFPSSQDHPLPLEERYTEFCDSGPNRR 148 (311)
T ss_pred CCCceeEEEEEeCCCeEEEEEEEEeecc-------CCCCCEEEEEeceEECccCCcCcccCCCchHHHHHHhccCCCCcc
Confidence 5688999888899999999999999986 443699999998762221 123689985544
Q ss_pred ceEeeCCEEEEEEEeCCCCCccCCceEEEecc--cCCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEE
Q psy4099 95 EITSSGHQLYIKFFSDDDRFKYPGFKITWDSA--STGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWS 172 (190)
Q Consensus 95 ~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~--~~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f 172 (190)
.+.|+.|...|.|+-... ++||.++.+.. +..|+-....+.|.++--|| ....+|+..|.-|. .+++
T Consensus 149 ~~rSSQNvAmi~fRip~~---GsgFt~~vR~~~Np~PCNVisq~~~g~fTl~n~----gq~rNCSfs~iyP~----~i~i 217 (311)
T PF05428_consen 149 SFRSSQNVAMIQFRIPSP---GSGFTLTVRFIKNPFPCNVISQSPEGRFTLRNP----GQRRNCSFSIIYPV----VISI 217 (311)
T ss_pred eeEeccceEEEEEEecCC---CCceEEEEEeCCCCCCceEeccCCCcceEEECC----CcccCcEEEEEeee----EEEE
Confidence 789999999999987764 58898887766 46898777778888877664 44567999888774 4445
Q ss_pred eEEeeCC
Q psy4099 173 LDVQLDC 179 (190)
Q Consensus 173 ~~f~l~~ 179 (190)
.++.|..
T Consensus 218 ~~L~lG~ 224 (311)
T PF05428_consen 218 SDLSLGH 224 (311)
T ss_pred EEEeccc
Confidence 5555544
No 12
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=97.18 E-value=0.017 Score=37.97 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=49.2
Q ss_pred CCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeeecCCCCCCceEeeCCEEEEEE
Q psy4099 28 PYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKF 107 (190)
Q Consensus 28 ~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~cg~~~~~~~~s~~~~~~i~f 107 (190)
.++.+..|.|.|.+|.|..++|++. -++.. .|.+.|.|........ ..... ..+....+...|.+
T Consensus 37 ~~p~n~~C~y~i~iP~G~~a~v~~~-~~~~~---------~d~i~v~D~~g~~~~~---~~~~~--~~~~~~~p~~~i~v 101 (120)
T PF02408_consen 37 QFPANQNCTYQINIPKGYYAKVTLS-ANLND---------NDSITVTDSNGKSEYI---TSSDN--EPFYFVAPGFSIQV 101 (120)
T ss_pred ccCCCCceEEEEEcCCceEEEEEEE-EecCC---------CCEEEEEecCCCEEEe---ecCCC--cEEEEeCCCeEEEE
Confidence 4678899999999999999988873 23332 4899999866532111 11111 23344444456666
Q ss_pred EeCCCCCccCCceEEEe
Q psy4099 108 FSDDDRFKYPGFKITWD 124 (190)
Q Consensus 108 ~s~~~~~~~~gf~~~y~ 124 (190)
.+.... ..-+|++.|.
T Consensus 102 ~t~t~~-~~F~f~v~w~ 117 (120)
T PF02408_consen 102 QTVTGN-SQFGFKVQWQ 117 (120)
T ss_pred EECCCC-cEEEEEEEEE
Confidence 666554 3445555554
No 13
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=94.17 E-value=0.094 Score=34.47 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCCCCcceEEEEEeCCCCEEEEEEeE
Q psy4099 149 PYAYRTTCYWKIYVSQGSSITLWSLD 174 (190)
Q Consensus 149 ~y~~~~~C~w~i~~~~~~~i~l~f~~ 174 (190)
.+|.+..|.|.|.+|.|+-++|.+..
T Consensus 37 ~~p~n~~C~y~i~iP~G~~a~v~~~~ 62 (120)
T PF02408_consen 37 QFPANQNCTYQINIPKGYYAKVTLSA 62 (120)
T ss_pred ccCCCCceEEEEEcCCceEEEEEEEE
Confidence 47888899999999999999988765
No 14
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=45.52 E-value=12 Score=20.43 Aligned_cols=9 Identities=22% Similarity=0.069 Sum_probs=7.0
Q ss_pred CCCCccccc
Q psy4099 181 KLLASDLEF 189 (190)
Q Consensus 181 ~~C~~d~~~ 189 (190)
.+|.|||.+
T Consensus 29 knCsYDYll 37 (56)
T PF13978_consen 29 KNCSYDYLL 37 (56)
T ss_pred CCCcceeee
Confidence 489999864
No 15
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=45.07 E-value=1.4e+02 Score=23.06 Aligned_cols=102 Identities=15% Similarity=0.253 Sum_probs=58.1
Q ss_pred cCCCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeec-------CCCCCCCC-CcEEEEEe
Q psy4099 4 NLSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERY-------FCNPTCGD-TDYLEVRD 75 (190)
Q Consensus 4 ~~~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~-------~~~~~C~~-~d~l~i~~ 75 (190)
..+..|+-.....+|.++-=+ |....+|+..|--| +.+++..+.|... .....|.. .|+|+|..
T Consensus 178 ~Np~PCNVisq~~~g~fTl~n----~gq~rNCSfs~iyP----~~i~i~~L~lG~~~~l~~~~~~~~~C~~~~D~Vei~G 249 (311)
T PF05428_consen 178 KNPFPCNVISQSPEGRFTLRN----PGQRRNCSFSIIYP----VVISISDLSLGHTNGLELQRGVIHGCQGSGDFVEIGG 249 (311)
T ss_pred CCCCCceEeccCCCcceEEEC----CCcccCcEEEEEee----eEEEEEEEecccccCcccccccccCCCCcCCeEEECC
Confidence 345567766667777666544 35667899988755 3445555555331 11334542 59999988
Q ss_pred CCCCCCC---ceeeecCCCCC-CceEeeCCEEEEEEEeCCCC
Q psy4099 76 GGYESSP---QLGIYCCKNHP-GEITSSGHQLYIKFFSDDDR 113 (190)
Q Consensus 76 ~~~~~~~---~~~~~cg~~~~-~~~~s~~~~~~i~f~s~~~~ 113 (190)
+..-+.. ....+|+.... ......-..-.|++.|.+..
T Consensus 250 g~GlD~skM~~~~~lCg~~~~p~~~~I~Cd~TvVRLVSSG~~ 291 (311)
T PF05428_consen 250 GNGLDTSKMFPVADLCGSFSGPAQMKIGCDNTVVRLVSSGRY 291 (311)
T ss_pred cCCcCcccCEEhhHhhccCCCCceEEEecCCcEEEEEecCcc
Confidence 7664332 24568887543 33333333445666665543
No 16
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=33.77 E-value=48 Score=24.05 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=26.6
Q ss_pred ECCCCCCCCCCCcceEEE-E-EeCCCCE-EEEEEe-EEeeCC
Q psy4099 142 ISPGYPYPYAYRTTCYWK-I-YVSQGSS-ITLWSL-DVQLDC 179 (190)
Q Consensus 142 ~Sp~yp~~y~~~~~C~w~-i-~~~~~~~-i~l~f~-~f~l~~ 179 (190)
.||++-..|..+.+|.|. | .+|+|.- +++.+. ++.|.+
T Consensus 135 IS~Gc~DtY~~~idcQWiDITdvp~G~Y~l~V~vNP~~~v~E 176 (205)
T PF01186_consen 135 ISPGCGDTYRHDIDCQWIDITDVPPGTYILQVTVNPEYRVAE 176 (205)
T ss_pred ccCCccccccCCCCccceeecCCCCccEEEEEecCCcccccc
Confidence 699999999999999998 4 2677764 333332 245544
No 17
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=32.62 E-value=90 Score=18.48 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=18.2
Q ss_pred CceEEEEEcCCCCeEEEEEeE
Q psy4099 33 MLCVWTLTVPRGQQIRLNFTT 53 (190)
Q Consensus 33 ~~C~w~I~~~~~~~i~l~f~~ 53 (190)
..|.-.|+.|.|.++..+|..
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~ 23 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPS 23 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCC
Confidence 469999999999999998863
No 18
>KOG2689|consensus
Probab=31.01 E-value=82 Score=24.01 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=24.9
Q ss_pred ECCCCCCCCCC--CcceEEEEEeCCCCEEEEEEeE
Q psy4099 142 ISPGYPYPYAY--RTTCYWKIYVSQGSSITLWSLD 174 (190)
Q Consensus 142 ~Sp~yp~~y~~--~~~C~w~i~~~~~~~i~l~f~~ 174 (190)
.+|+-+..-|+ ...|+..|..|+|+.+..+|..
T Consensus 195 ~s~s~~~~spp~~ys~crlQiRl~DG~Tl~~tF~a 229 (290)
T KOG2689|consen 195 PSPSAPSQSPPTDYSQCRLQIRLPDGQTLTQTFNA 229 (290)
T ss_pred CCCCccccCCCCcccceEEEEEcCCCCeeeeecCc
Confidence 34444444444 5789999999999999999874
No 19
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=26.59 E-value=60 Score=13.11 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=7.5
Q ss_pred cceEEEEEeCC
Q psy4099 154 TTCYWKIYVSQ 164 (190)
Q Consensus 154 ~~C~w~i~~~~ 164 (190)
..|+|.++..+
T Consensus 4 ~~~~wlFEtqp 14 (16)
T PF08043_consen 4 KTTRWLFETQP 14 (16)
T ss_pred ceeEEEeeccc
Confidence 35888887654
No 20
>KOG2689|consensus
Probab=26.38 E-value=1.2e+02 Score=23.16 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.8
Q ss_pred CCceEEEEEcCCCCeEEEEEeE
Q psy4099 32 NMLCVWTLTVPRGQQIRLNFTT 53 (190)
Q Consensus 32 ~~~C~w~I~~~~~~~i~l~f~~ 53 (190)
...|+..|+.++|+.+..+|..
T Consensus 208 ys~crlQiRl~DG~Tl~~tF~a 229 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQTLTQTFNA 229 (290)
T ss_pred ccceEEEEEcCCCCeeeeecCc
Confidence 5799999999999999999963
No 21
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=26.19 E-value=4.1e+02 Score=23.27 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=21.9
Q ss_pred EEEcCCCCeEEEEEe-EeEEeecCCCCCCCCCcEEEEE
Q psy4099 38 TLTVPRGQQIRLNFT-TFQLERYFCNPTCGDTDYLEVR 74 (190)
Q Consensus 38 ~I~~~~~~~i~l~f~-~f~l~~~~~~~~C~~~d~l~i~ 74 (190)
.|..|.+....|.|. .+++|. . +||+.|.
T Consensus 359 ~vdLp~~s~AtLsfk~wydIE~-------d-yDy~~Ve 388 (645)
T PF05547_consen 359 SVDLPAASSATLSFKAWYDIEA-------D-YDYAYVE 388 (645)
T ss_pred eeccCCCCCeEEEeehheeccc-------C-CceEEEE
Confidence 566677777889986 578887 4 7888777
No 22
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=24.50 E-value=22 Score=13.11 Aligned_cols=7 Identities=29% Similarity=1.070 Sum_probs=4.2
Q ss_pred CCceEEE
Q psy4099 32 NMLCVWT 38 (190)
Q Consensus 32 ~~~C~w~ 38 (190)
...|.|+
T Consensus 3 ~~~CFWK 9 (12)
T PF02083_consen 3 KSECFWK 9 (12)
T ss_pred ccchhhh
Confidence 3567775
No 23
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=22.70 E-value=1.4e+02 Score=17.82 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=17.1
Q ss_pred ceEEEEEeCCCCEEEEEEeE
Q psy4099 155 TCYWKIYVSQGSSITLWSLD 174 (190)
Q Consensus 155 ~C~w~i~~~~~~~i~l~f~~ 174 (190)
.|.-.|..|+|.++..+|..
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~ 23 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNS 23 (79)
T ss_pred eeEEEEECCCCCEEEEEeCC
Confidence 57889999999999988863
No 24
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=22.48 E-value=1.5e+02 Score=17.38 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=16.2
Q ss_pred ceEEEEEeCCCCEEEEEEe
Q psy4099 155 TCYWKIYVSQGSSITLWSL 173 (190)
Q Consensus 155 ~C~w~i~~~~~~~i~l~f~ 173 (190)
.|+-.|+.|+|.++..+|.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~ 20 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFN 20 (77)
T ss_pred cEEEEEEcCCCCEEEEEeC
Confidence 4778899999999988886
No 25
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.47 E-value=1.7e+02 Score=17.40 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=17.7
Q ss_pred cceEEEEEeCCCCEEEEEEeE
Q psy4099 154 TTCYWKIYVSQGSSITLWSLD 174 (190)
Q Consensus 154 ~~C~w~i~~~~~~~i~l~f~~ 174 (190)
..|+-.|+.|+|.++.-+|..
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~ 23 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKA 23 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCC
Confidence 468889999999999988864
No 26
>PF06473 FGF-BP1: FGF binding protein 1 (FGF-BP1); InterPro: IPR010510 This family consists of several mammalian FGF binding protein 1. Fibroblast growth factors (FGFs) play important roles during foetal and embryonic development []. Fibroblast growth factor-binding protein (FGF-BP) 1 is a secreted protein that can bind fibroblast growth factors (FGFs) 1 and 2 [].
Probab=21.12 E-value=1.9e+02 Score=21.54 Aligned_cols=28 Identities=18% Similarity=0.516 Sum_probs=16.7
Q ss_pred ceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEe
Q psy4099 17 EGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT 52 (190)
Q Consensus 17 ~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~ 52 (190)
.|.|.++ ....|+|.+. ..+..|.|.+.
T Consensus 43 ~GkF~Tk-------~~~~Ctw~v~-~~~~~~~L~V~ 70 (231)
T PF06473_consen 43 SGKFVTK-------DQHACTWQVT-TGEDGVELRVE 70 (231)
T ss_pred cceeecC-------CCCceEEEec-cCCCceEEEEE
Confidence 4666664 3568999992 22345555543
Done!