Query psy4099
Match_columns 190
No_of_seqs 195 out of 1476
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 16:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gz9_A Neuropilin-1, A5 protei 100.0 3.2E-43 1.1E-47 286.8 20.1 176 7-188 7-193 (577)
2 3kq4_B Cubilin; protein-protei 100.0 1.1E-42 3.9E-47 277.4 20.5 175 6-188 231-407 (457)
3 3kq4_B Cubilin; protein-protei 100.0 4E-43 1.4E-47 280.1 17.5 180 4-188 112-292 (457)
4 1nt0_A MAsp2, mannose-binding 100.0 4.8E-42 1.6E-46 258.6 17.9 168 12-188 3-227 (286)
5 3dem_A Complement factor MAsp- 100.0 7.2E-42 2.5E-46 256.8 18.7 170 10-188 2-228 (278)
6 2qqk_A Neuropilin-2; VEGF rece 100.0 2E-41 6.8E-46 277.0 21.8 178 5-188 2-191 (579)
7 4aqb_A Mannan-binding lectin s 100.0 3.1E-39 1.1E-43 250.7 18.1 168 12-188 4-228 (361)
8 2wno_A Tumor necrosis factor-i 100.0 2.1E-31 7.2E-36 181.9 15.6 117 6-127 4-120 (149)
9 3poj_A Mannan-binding lectin s 100.0 4.4E-29 1.5E-33 163.6 12.2 112 7-125 2-115 (115)
10 2qqm_A Neuropilin-1; VEGF rece 99.9 1.7E-27 5.9E-32 189.4 13.7 134 5-143 7-152 (450)
11 2qqo_A Neuropilin-2; VEGF rece 99.9 1.1E-26 3.8E-31 185.2 14.8 132 5-141 4-147 (460)
12 1spp_B Major seminal plasma gl 99.9 1.4E-26 4.8E-31 151.7 11.6 107 5-127 5-111 (116)
13 1spp_A Major seminal plasma gl 99.9 1.7E-26 5.8E-31 149.6 11.7 105 6-127 3-107 (109)
14 1sfp_A ASFP; spermadhesin, bov 99.9 5E-26 1.7E-30 148.6 12.5 107 5-127 6-112 (114)
15 1szb_A Mannose binding lectin- 99.9 1E-25 3.4E-30 157.3 13.8 115 8-131 2-128 (170)
16 1nzi_A Complement C1S componen 99.9 7.8E-26 2.7E-30 156.3 11.3 112 13-133 1-123 (159)
17 4gz9_A Neuropilin-1, A5 protei 99.9 1.2E-25 4.2E-30 183.3 13.9 126 4-131 124-252 (577)
18 1nt0_A MAsp2, mannose-binding 99.9 9E-25 3.1E-29 164.4 13.3 112 8-126 164-277 (286)
19 4aqb_A Mannan-binding lectin s 99.9 4.7E-24 1.6E-28 165.4 17.2 152 7-169 165-317 (361)
20 2qqk_A Neuropilin-2; VEGF rece 99.9 2.6E-24 8.9E-29 176.0 14.5 133 7-141 125-266 (579)
21 3dem_A Complement factor MAsp- 99.9 2.9E-24 9.8E-29 161.1 13.2 112 7-125 164-277 (278)
22 2wno_A Tumor necrosis factor-i 99.8 2E-18 6.9E-23 117.5 8.5 61 128-188 5-65 (149)
23 3poj_A Mannan-binding lectin s 99.7 7.2E-18 2.5E-22 110.0 5.1 61 128-188 2-66 (115)
24 1szb_A Mannose binding lectin- 99.7 8.5E-17 2.9E-21 112.0 7.8 59 130-188 3-62 (170)
25 1nzi_A Complement C1S componen 99.7 1.1E-16 3.6E-21 110.3 6.3 55 134-188 1-55 (159)
26 2qqm_A Neuropilin-1; VEGF rece 99.6 2.7E-15 9.3E-20 119.3 7.0 61 128-188 9-75 (450)
27 2qqo_A Neuropilin-2; VEGF rece 99.6 5.5E-15 1.9E-19 117.8 8.0 61 128-188 6-72 (460)
28 1spp_A Major seminal plasma gl 99.5 3E-14 1E-18 91.8 7.3 52 128-188 4-55 (109)
29 1spp_B Major seminal plasma gl 99.5 5.2E-14 1.8E-18 91.7 6.6 53 127-188 6-58 (116)
30 1sfp_A ASFP; spermadhesin, bov 99.5 7.8E-14 2.7E-18 90.6 7.1 54 126-188 6-59 (114)
No 1
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=100.00 E-value=3.2e-43 Score=286.81 Aligned_cols=176 Identities=35% Similarity=0.630 Sum_probs=162.2
Q ss_pred CCCCceEecC-ceEEECCCCCCCCCCCCceEEEEEcCCC-CeEEEEEe-EeEEeecCCCCCCCCCcEEEEEeCCCCCCCc
Q psy4099 7 TTCGGNFYSP-EGTLTSPQYPDPYPPNMLCVWTLTVPRG-QQIRLNFT-TFQLERYFCNPTCGDTDYLEVRDGGYESSPQ 83 (190)
Q Consensus 7 ~~Cg~~~~~~-~G~i~SP~~p~~y~~~~~C~w~I~~~~~-~~i~l~f~-~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~ 83 (190)
..||+.++.. .|.|+||+||..|+++.+|.|.|++|.+ .+|+|+|. .|+|+. .+|. +|+|+|+||.....++
T Consensus 7 ~~CGg~l~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~----~~C~-~Dyl~I~dG~~~~~~~ 81 (577)
T 4gz9_A 7 DKCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLED----RDCK-YDYVEVIDGENEGGRL 81 (577)
T ss_dssp CCSSEEEECSSCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCC----GGGT-SSEEEEEESSSTTSEE
T ss_pred CCCCCEEEcCCCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecC----CCCC-ccEEEEEeCCCCCCcE
Confidence 5799999864 6999999999999999999999999855 78999996 799985 4699 9999999999988899
Q ss_pred eeeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEeccc--CCCCCeeecCeeeEECCCCCCCCCCCcceEEEEE
Q psy4099 84 LGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS--TGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIY 161 (190)
Q Consensus 84 ~~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~--~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~ 161 (190)
++++||...|..++|+++.|+|+|+++... ..+||.|.|+++. ..|++.+++..|.|.||+||..||++.+|.|.|+
T Consensus 82 lg~~CG~~~p~~i~S~~n~l~v~F~SD~s~-~~~GF~a~y~~~~~~~~C~~~~~~~~G~i~SPnyP~~Yp~n~~C~W~I~ 160 (577)
T 4gz9_A 82 WGKFCGKIAPSPVVSSGPFLFIKFVSDYET-HGAGFSIRYEIFKRGPECSQNYTAPTGVIKSPGFPEKYPNSLECTYIIF 160 (577)
T ss_dssp EEEECSSSCCCCEECSSSEEEEEEECCSSC-CCCBCEEEEEECCCCCEEEEEECSSEEEEECTTTTSCCCSSCEEEEEEE
T ss_pred EEEecCCCCCCCEEEeCCeEEEEEEECCCC-CCCCeEEEEEEeecCcccceeecCCCccccCCCCCCCCCCCceEEEEEE
Confidence 999999999999999999999999999999 9999999999874 3589999999999999999999999999999999
Q ss_pred eCCCCEEEEEEeEEeeCCCC------CCCcccc
Q psy4099 162 VSQGSSITLWSLDVQLDCNK------LLASDLE 188 (190)
Q Consensus 162 ~~~~~~i~l~f~~f~l~~~~------~C~~d~~ 188 (190)
+|+|++|.|.|.+|+||.+. .|.+||.
T Consensus 161 ~p~g~~I~L~F~~F~lE~~~~~~~~~~C~~D~l 193 (577)
T 4gz9_A 161 APKMSEIILEFESFDLEQDSNPPGGMFCRYDRL 193 (577)
T ss_dssp CGGGCCEEEEEEEEECCCCCSCSTTCCCCSSEE
T ss_pred ECCCCEEEEEEEEEEeeecCCCCCCCccCccEE
Confidence 99999999999999999864 4999964
No 2
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=277.42 Aligned_cols=175 Identities=34% Similarity=0.662 Sum_probs=166.0
Q ss_pred CCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy4099 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLG 85 (190)
Q Consensus 6 ~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~ 85 (190)
...||+.++..+|.|+||+||..|+++.+|.|.|+++++++|+|.|..|+|+. ...|. +|+|+|+||.....++++
T Consensus 231 ~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~f~~f~le~---~~~C~-~D~l~i~dg~~~~~~~l~ 306 (457)
T 3kq4_B 231 STGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEH---HPNCT-LDYLAVYDGPSSNSHLLT 306 (457)
T ss_dssp CCCCEECCCSSEEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEEEEECCCCC---CTTCC-SSEEEEEESSSTTSEEEE
T ss_pred cCCCCCeEccCcceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEEEEeeeecC---CCCcC-CCEEEEEeCCCCCchhhh
Confidence 36899999999999999999999999999999999999999999999999998 88999 999999999988888899
Q ss_pred eecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEecccCCCCCeeec--CeeeEECCCCCCCCCCCcceEEEEEeC
Q psy4099 86 IYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSASTGCGGILTG--SSGSIISPGYPYPYAYRTTCYWKIYVS 163 (190)
Q Consensus 86 ~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~~~C~~~~~~--~~g~i~Sp~yp~~y~~~~~C~w~i~~~ 163 (190)
++||...|..+.|+++.|+|+|+++... ..+||+|.|+. .|++.+.. ..|.|.||+||..||++.+|.|+|++|
T Consensus 307 ~~CG~~~p~~i~S~~n~l~v~f~sd~~~-~~~GF~a~y~~---~C~~~~~~~~~~G~i~Sp~yP~~Yp~~~~C~w~i~~~ 382 (457)
T 3kq4_B 307 QLCGDEKPPLIRSSGDSMFIKLRTDEGQ-QGRGFKAEYRQ---TCENVVIVNQTYGILESIGYPNPYSENQHCNWTIRAT 382 (457)
T ss_dssp EECSSCCCCCEECSSSCEEEEEECCSSC-CCCCCEEEEEE---CCTTEEECSCSSEEEECTTTTSCCCSSCEEEEEEECS
T ss_pred hhcCCcCCCCEEecCCEEEEEEEeCCcc-cCCeEEEEEEe---ecCCcccccceeeEEecCCCCccCCCCCceEEEEEcC
Confidence 9999999999999999999999999998 99999999997 59998764 569999999999999999999999999
Q ss_pred CCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 164 QGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 164 ~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
+|++|+|+|.+|+||....|.+||.
T Consensus 383 ~g~~i~l~f~~f~le~~~~C~~D~l 407 (457)
T 3kq4_B 383 TGNTVNYTFLAFDLEHHINCSTDYL 407 (457)
T ss_dssp TTCCCEEEEEEEECCCCTTTTSSEE
T ss_pred CCCEEEEEEeEEEEccCCCCCceEE
Confidence 9999999999999999999999974
No 3
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=100.00 E-value=4e-43 Score=280.06 Aligned_cols=180 Identities=43% Similarity=0.767 Sum_probs=171.2
Q ss_pred cCCCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCC-CCCCCcEEEEEeCCCCCCC
Q psy4099 4 NLSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNP-TCGDTDYLEVRDGGYESSP 82 (190)
Q Consensus 4 ~~~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~-~C~~~d~l~i~~~~~~~~~ 82 (190)
.....||+.++..+|.|+||+||..|+++..|.|.|+++++++|.|+|..|+|+. .. .|. +|+|+|+||.....+
T Consensus 112 ~~~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~~f~le~---~~~~C~-~D~l~i~dg~~~~s~ 187 (457)
T 3kq4_B 112 SAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEE---AIGNYY-TDFLEIRDGGYEKSP 187 (457)
T ss_dssp ESSSCEEEEECSSCCCEECTTTTSCCCSSCEEEEEECCCSSCCCEEEEEEEECCC---CBTTBC-SSEEEEESSSSTTSC
T ss_pred cccccccceeecCcEEECCCCCCCcCCCCceEEEEEEeCCCCEEEEEEEEEEeec---CCCCcc-cceEEEecCCCCCcc
Confidence 3456799999999999999999999999999999999999999999999999997 55 899 999999999988888
Q ss_pred ceeeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEecccCCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEe
Q psy4099 83 QLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYV 162 (190)
Q Consensus 83 ~~~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~ 162 (190)
+++++||...|..++|.++.|+|+|+++... ...||++.|++....|++.++...|.|.||+||..||++.+|.|.|++
T Consensus 188 ~~~~~cG~~~p~~~~S~~n~l~v~F~sd~~~-~~~GF~~~y~~~~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~ 266 (457)
T 3kq4_B 188 LLGIFYGSNLPPTIISHSNKLWLKFKSDQID-TRSGFSAYWDGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKS 266 (457)
T ss_dssp EEEEECSSSCCCCEECSSSCEEEEEECCSSC-CCCEEEEEEECCCCCCEECCCSSEEEEECTTTTSCCCSSCEEEEEECC
T ss_pred eeeeecCCCCCCCeEEcCCEEEEEEEeCCCC-CcCCEEEEeccccCCCCCeEccCcceeccCCCCCCCCCCCEEEEEEEe
Confidence 9999999999999999999999999999998 999999999988889999999999999999999999999999999999
Q ss_pred CCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 163 SQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 163 ~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
++|++|+|.|.+|+||....|.+||.
T Consensus 267 ~~~~~i~l~f~~f~le~~~~C~~D~l 292 (457)
T 3kq4_B 267 SHGSAFELEFKDFHLEHHPNCTLDYL 292 (457)
T ss_dssp STTCCEEEEEEECCCCCCTTCCSSEE
T ss_pred CCCCEEEEEEEeeeecCCCCcCCCEE
Confidence 99999999999999999999999964
No 4
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=100.00 E-value=4.8e-42 Score=258.58 Aligned_cols=168 Identities=32% Similarity=0.535 Sum_probs=144.8
Q ss_pred eEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeeecCCC
Q psy4099 12 NFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCCKN 91 (190)
Q Consensus 12 ~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~cg~~ 91 (190)
.|++..|.|+||+||..|+++.+|.|.|++++|++|+|+|..|+|+. +..|. +|+|+|+||. ..++++||..
T Consensus 3 ~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~---~~~C~-~D~l~I~dg~----~~~~~~CG~~ 74 (286)
T 1nt0_A 3 WPEPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLEL---SYRCE-YDFVKLTSGT----KVLATLCGQE 74 (286)
T ss_dssp --CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCC---CGGGC-SSEEEEEETT----EEEEEECSSS
T ss_pred cccCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecC---CCCCC-CcEEEEECCC----eEeceECCCc
Confidence 56788999999999999999999999999999999999999999998 78899 9999999985 4689999986
Q ss_pred ------CC--CceEeeCCEEEEEEEeCCCCCcc--CCceEEEeccc----------------------------------
Q psy4099 92 ------HP--GEITSSGHQLYIKFFSDDDRFKY--PGFKITWDSAS---------------------------------- 127 (190)
Q Consensus 92 ------~~--~~~~s~~~~~~i~f~s~~~~~~~--~gf~~~y~~~~---------------------------------- 127 (190)
.| ..++|+++.|+|+|+++... .. .||+|.|++++
T Consensus 75 ~~~~~~~P~~~~~~S~~n~l~v~F~Sd~s~-~~~~~GF~a~y~~~~~~~C~~~~~~~~~c~~~C~n~~g~~~csC~~Gy~ 153 (286)
T 1nt0_A 75 STDTERAPGNDTFYSLGPSLKVTFHSDYSN-EKPFTGFEAFYAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYI 153 (286)
T ss_dssp CCSSCBCCTTCEEECSSSEEEEEEECCC-----CCCEEEEEEEEEECCTTC-------CCSSEEEEETTEEEEECCTTEE
T ss_pred CCCcccCCCCceEEeCCCEEEEEEEeCCcC-CcCcccEEEEEEeccCCccCCCCCCcccCCCccccccCceEeecCCCce
Confidence 46 68999999999999999887 54 99999999862
Q ss_pred ---------CCCCCe-eecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEe-EEeeCCC--CCCCcccc
Q psy4099 128 ---------TGCGGI-LTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSL-DVQLDCN--KLLASDLE 188 (190)
Q Consensus 128 ---------~~C~~~-~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~-~f~l~~~--~~C~~d~~ 188 (190)
..|++. +++..|.|.||+||..||++.+|.|.|++|+|++|+|.|. +|+||.. ..|.+||.
T Consensus 154 L~~d~~~C~~~Cg~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~~~~~C~~D~l 227 (286)
T 1nt0_A 154 LHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSL 227 (286)
T ss_dssp ECTTSSCEEECCEEEEECSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC----C--CEE
T ss_pred eccCCCCccccccCceecCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccCCCCCCCCcEE
Confidence 146666 7888999999999999999999999999999999999996 7999985 58999964
No 5
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.2e-42 Score=256.83 Aligned_cols=170 Identities=28% Similarity=0.533 Sum_probs=148.3
Q ss_pred CceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeeecC
Q psy4099 10 GGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCC 89 (190)
Q Consensus 10 g~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~cg 89 (190)
|+.+++.+|.|+||+||..|+++.+|.|.|++++|++|+|+|..|+|+. +..|. +|+|+|+++. ..++++||
T Consensus 2 g~~lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~---~~~C~-~D~l~v~dg~----~~~~~~CG 73 (278)
T 3dem_A 2 TVELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES---SYLCE-YDYVKVETED----QVLATFCG 73 (278)
T ss_dssp -----CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCC---CGGGC-SSEEEEECSS----CEEEEECS
T ss_pred cceeccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCC---CCCCC-CcEEEEecCC----cccceEcC
Confidence 4678899999999999999999999999999999999999999999998 78999 9999999975 36899999
Q ss_pred CCCC--------CceEeeCCEEEEEEEeCCCCCcc--CCceEEEeccc--------------------------------
Q psy4099 90 KNHP--------GEITSSGHQLYIKFFSDDDRFKY--PGFKITWDSAS-------------------------------- 127 (190)
Q Consensus 90 ~~~~--------~~~~s~~~~~~i~f~s~~~~~~~--~gf~~~y~~~~-------------------------------- 127 (190)
...+ ..++|+++.|+|+|+++... .. .||+|.|++++
T Consensus 74 ~~~~~~~~~~~~~~~~S~~n~l~v~F~Sd~~~-~~~~~GF~~~y~~~~~~~C~~~~~~~~~c~~~C~n~~g~~~C~C~~G 152 (278)
T 3dem_A 74 RETTDTEQTPGQEVVLSPGSFMSITFRSDFSN-EERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFG 152 (278)
T ss_dssp BSSSSSSCCCTTCCEECSSSEEEEEEEECSCC-CSCCCEEEEEEEEEECCTTTC-----CCCSSEEEEETTEEEEECCTT
T ss_pred CcCCCcccCCCCccEEecCCeEEEEEecCccc-ccccceeEEEEEEeccccCCCCCCCcccCCcCcCCccCCcEEEeCCc
Confidence 8643 57999999999999999876 54 79999998752
Q ss_pred -----------CCCCCe-eecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeE-EeeCCC--CCCCcccc
Q psy4099 128 -----------TGCGGI-LTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLD-VQLDCN--KLLASDLE 188 (190)
Q Consensus 128 -----------~~C~~~-~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~--~~C~~d~~ 188 (190)
..|++. +++..|.|.||+||..||++.+|.|.|++++|++|+|+|.+ |+||.. ..|.+||.
T Consensus 153 y~l~~d~~~C~~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~~~~~C~~D~l 228 (278)
T 3dem_A 153 YILHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYI 228 (278)
T ss_dssp CEECTTSSCEECCCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCCSSSSSSSCEE
T ss_pred ceeccCCCCCcccCCCceecCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccCCCCCCCCCEE
Confidence 246653 57889999999999999999999999999999999999998 999975 48999964
No 6
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=100.00 E-value=2e-41 Score=276.98 Aligned_cols=178 Identities=36% Similarity=0.642 Sum_probs=154.5
Q ss_pred CCCCCCceEec-CceEEECCCCCCCCCCCCceEEEEEcCC-CCeEEEEEe-EeEEeecCCCCCCCCCcEEEEEeCCCCCC
Q psy4099 5 LSTTCGGNFYS-PEGTLTSPQYPDPYPPNMLCVWTLTVPR-GQQIRLNFT-TFQLERYFCNPTCGDTDYLEVRDGGYESS 81 (190)
Q Consensus 5 ~~~~Cg~~~~~-~~G~i~SP~~p~~y~~~~~C~w~I~~~~-~~~i~l~f~-~f~l~~~~~~~~C~~~d~l~i~~~~~~~~ 81 (190)
....||+.+.. ..|.|+||+||..|+++.+|.|.|+++. +++|.|+|. .|+|+. ..|. +|+|+|++|.....
T Consensus 2 p~~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~----~~C~-~D~l~i~dg~~~~~ 76 (579)
T 2qqk_A 2 PDPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK----HDCK-YDFIEIRDGDSESA 76 (579)
T ss_dssp ---CCCEEEETTSCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCC----TTSS-SSEEEEEESSSTTS
T ss_pred CCCCCCCEEEeCCCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEeccccccc----CCCC-eeEEEEEeCCCCCc
Confidence 45689999986 6899999999999999999999999995 689999999 899985 4699 99999999988878
Q ss_pred CceeeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEeccc---CCCCCeeecCeeeEECCCCCCCCCCCcceEE
Q psy4099 82 PQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS---TGCGGILTGSSGSIISPGYPYPYAYRTTCYW 158 (190)
Q Consensus 82 ~~~~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~---~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w 158 (190)
++++++||...|..++|+++.|+|+|+++... ..+||++.|+++. ..|++.++..+|.|.||+||..||++.+|.|
T Consensus 77 ~~l~~~CG~~~p~~i~S~~n~l~v~F~Sd~~~-~~~GF~~~y~~~~~~~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w 155 (579)
T 2qqk_A 77 DLLGKHCGNIAPPTIISSGSMLYIKFTSDYAR-QGAGFSLRYEIFKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTF 155 (579)
T ss_dssp EEEEEECTTSCCCCEECSSSEEEEEEECC----CCCBCEEEEEEECCCCCCCCCEECCSEEEEECTTTTSCCCSSCEEEE
T ss_pred ceeeeECCCCCCCCEEecCCEEEEEEEECCCC-CCCceEEEEEEcccccccccceeccCCceecCCCCcccCCCCCeEEE
Confidence 89999999999999999999999999999988 8999999999763 3599999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEEeEEeeCCC------CCCCcccc
Q psy4099 159 KIYVSQGSSITLWSLDVQLDCN------KLLASDLE 188 (190)
Q Consensus 159 ~i~~~~~~~i~l~f~~f~l~~~------~~C~~d~~ 188 (190)
.|.+++|++|.|.|.+|+||.+ ..|.+||.
T Consensus 156 ~I~~~~g~~I~l~F~~f~le~~~~~~~~~~C~~D~l 191 (579)
T 2qqk_A 156 TILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWL 191 (579)
T ss_dssp EEECCTTEEEEEEEEEEEC-------------CCEE
T ss_pred EEEcCCCCEEEEEEEEEEeecccccccCCCCCCEEE
Confidence 9999999999999999999975 48999964
No 7
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-39 Score=250.67 Aligned_cols=168 Identities=28% Similarity=0.531 Sum_probs=147.0
Q ss_pred eEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeeecCCC
Q psy4099 12 NFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCCKN 91 (190)
Q Consensus 12 ~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~cg~~ 91 (190)
.|++..|.|+||+||..|+++++|.|.|++++|++|+|+|.+|+||. +..|. +|+|+|+++.. .++++||..
T Consensus 4 ~lt~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~---~~~C~-~D~l~i~dg~~----~~~~~cG~~ 75 (361)
T 4aqb_A 4 ELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES---SYLCE-YDYVKVETEDQ----VLATFCGRE 75 (361)
T ss_dssp EEESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCC---CGGGC-SSEEEEECSSC----EEEEECSBS
T ss_pred EEeCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecC---CCCCC-ceEEEEccCCc----ccceeeccc
Confidence 57888999999999999999999999999999999999999999998 88999 99999999754 466777764
Q ss_pred CC--------CceEeeCCEEEEEEEeCCCCCcc--CCceEEEeccc----------------------------------
Q psy4099 92 HP--------GEITSSGHQLYIKFFSDDDRFKY--PGFKITWDSAS---------------------------------- 127 (190)
Q Consensus 92 ~~--------~~~~s~~~~~~i~f~s~~~~~~~--~gf~~~y~~~~---------------------------------- 127 (190)
.+ ..++|+++.|+|+|++|... .. .||+|.|+++.
T Consensus 76 ~~~~~~~~~~~~~~S~~n~l~v~F~SD~s~-~~~~~GF~a~y~~~~~~~c~~~~~~~~~~~~~c~n~~g~~~csC~~g~~ 154 (361)
T 4aqb_A 76 TTDTEQTPGQEVVLSPGSFMSITFRSDFSN-EERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYI 154 (361)
T ss_dssp SSSSSCCCTTCCEECSSSEEEEEEEECSCC-CSCCCEEEEEEEEEECCGGGTGGGSSSCCSSEEEEETTEEEEECCTTCE
T ss_pred cCCCccCCCccceeccCCEeEEEEEeCCcc-cccccccccceeeccccccccccccCCCCCccCCccCCCceeccCCCeE
Confidence 33 25899999999999999877 54 49999998752
Q ss_pred ----------CCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeE-EeeCCC--CCCCcccc
Q psy4099 128 ----------TGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLD-VQLDCN--KLLASDLE 188 (190)
Q Consensus 128 ----------~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~--~~C~~d~~ 188 (190)
..|++.++...|.|.||+||..||++.+|.|.|++++|++|.|.|.+ |+++.. ..|.+||.
T Consensus 155 l~~~~~~~~~~~c~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~~~~~~C~~D~l 228 (361)
T 4aqb_A 155 LHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYI 228 (361)
T ss_dssp ECTTSSCEECCCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCCCSSSSSSSSEE
T ss_pred EeccccccccccccceEeCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccCCccCccCCCeE
Confidence 23667788899999999999999999999999999999999999987 677663 37999974
No 8
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.98 E-value=2.1e-31 Score=181.90 Aligned_cols=117 Identities=34% Similarity=0.734 Sum_probs=111.0
Q ss_pred CCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy4099 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLG 85 (190)
Q Consensus 6 ~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~ 85 (190)
...||+.++..+|.|+||+||..|+++.+|.|.|+++++++|+|+|..|+|+. +..|. +|+|+|+|+.....++++
T Consensus 4 ~~~Cgg~l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~---~~~C~-~D~l~I~dg~~~~~~~~~ 79 (149)
T 2wno_A 4 AKECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLED---DPGCL-ADYVEIYDSYDDVHGFVG 79 (149)
T ss_dssp CSCCCEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCC---CTTCC-SSEEEEESSSSSSSSEEE
T ss_pred CCCCCCEEECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecC---CCCCC-CCEEEEecCCCCCcceee
Confidence 56799999999999999999999999999999999999999999999999998 78999 999999999887778899
Q ss_pred eecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEeccc
Q psy4099 86 IYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS 127 (190)
Q Consensus 86 ~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~ 127 (190)
++||...|..++|+++.|+|+|+++... ..+||+|.|+++.
T Consensus 80 ~~CG~~~p~~~~S~~n~l~v~F~Sd~~~-~~~GF~a~y~~~~ 120 (149)
T 2wno_A 80 RYCGDELPDDIISTGNVMTLKFLSDASV-TAGGFQIKYVAMD 120 (149)
T ss_dssp EECSSSCCCCEECSSSEEEEEEECCSSC-CCCEEEEEEEEEC
T ss_pred eEcCCCCCCCEEEeCCEEEEEEEECCCC-CCCCEEEEEEEEC
Confidence 9999988899999999999999999988 8999999999873
No 9
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.96 E-value=4.4e-29 Score=163.60 Aligned_cols=112 Identities=30% Similarity=0.717 Sum_probs=100.8
Q ss_pred CCCCceE-ecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-EeEEeecCCCCCCCCCcEEEEEeCCCCCCCce
Q psy4099 7 TTCGGNF-YSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNPTCGDTDYLEVRDGGYESSPQL 84 (190)
Q Consensus 7 ~~Cg~~~-~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~-~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~ 84 (190)
..||+.+ +..+|.|+||+||..|+++.+|.|.|+++++++|+|+|. .|+|+.. ....|. +|+|+|+||. ..+
T Consensus 2 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~-~~~~C~-~D~l~i~dg~----~~~ 75 (115)
T 3poj_A 2 VECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDH-PEVPCP-YDYIKIKAGS----KVW 75 (115)
T ss_dssp -CEEEEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCC-SSSSSC-SCEEEEEETT----EEE
T ss_pred eECCCceEcCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccC-CCCCCC-CeEEEEEcCC----ccc
Confidence 4699985 788999999999999999999999999999999999999 5999861 124899 9999999984 468
Q ss_pred eeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEec
Q psy4099 85 GIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125 (190)
Q Consensus 85 ~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~ 125 (190)
+++||...|..++|+++.|+|+|+++... ..+||+|.|++
T Consensus 76 ~~~CG~~~p~~~~s~~~~l~i~F~Sd~~~-~~~GF~~~y~a 115 (115)
T 3poj_A 76 GPFCGEKSPEPISTQSHSIQILFRSDNSG-ENRGWRLSYRA 115 (115)
T ss_dssp EEECBSSCCCCEECCCSEEEEEEECCSSC-CCCBCEEEEEC
T ss_pred ccCcCCCCCCCEEecCCEEEEEEEcCCCC-CCCCEEEEEEC
Confidence 89999998899999999999999999998 99999999975
No 10
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.95 E-value=1.7e-27 Score=189.44 Aligned_cols=134 Identities=32% Similarity=0.636 Sum_probs=118.7
Q ss_pred CCCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCC------CCCCCcEEEEEeCCC
Q psy4099 5 LSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNP------TCGDTDYLEVRDGGY 78 (190)
Q Consensus 5 ~~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~------~C~~~d~l~i~~~~~ 78 (190)
....||+.++...|.|+||+||..||++.+|.|.|++++|++|.|.|..|+|+. +. .|. +|+|+|+||..
T Consensus 7 ~~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~---~~~~~~~~~C~-~D~l~i~dg~~ 82 (450)
T 2qqm_A 7 RGPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEP---DSNPPGGMFCR-YDRLEIWDGFP 82 (450)
T ss_dssp --CTTCEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCC---C----CCCSSC-SSEEEEESSST
T ss_pred cCCCCCCeEeCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEe---ccCCCCCCCCC-CcEEEEecCCC
Confidence 456899999999999999999999999999999999999999999999999997 54 799 99999999988
Q ss_pred CCCCceeeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEeccc------CCCCCeeecCeeeEEC
Q psy4099 79 ESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS------TGCGGILTGSSGSIIS 143 (190)
Q Consensus 79 ~~~~~~~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~------~~C~~~~~~~~g~i~S 143 (190)
...++++++||...|..++|+++.|+|+|+++... ...||++.|+++. ..|+..+....|.|.+
T Consensus 83 ~~~~~~~~~CG~~~p~~i~S~~n~l~v~F~Sd~~~-~~~GF~~~y~~~~~~~~~~~~C~~~lg~~~g~I~~ 152 (450)
T 2qqm_A 83 DVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSAI-AKEGFSANYSVLQSSVSEDFKCMEALGMESGEIHS 152 (450)
T ss_dssp TTSCEEEEECTTCCCCEEEECSSEEEEEEECCSSC-CCCEEEEEEEECCCCCC--CCSCEECSTTTSCSCG
T ss_pred CCCccceeecCCcCCCcEEEcCCEEEEEEEeCCcc-ccCCeEEEEecccccccCCCccCcccccccccccc
Confidence 87889999999998999999999999999999988 8999999999874 3687766555555543
No 11
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=185.22 Aligned_cols=132 Identities=34% Similarity=0.603 Sum_probs=114.4
Q ss_pred CCCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCC------CCCCCCcEEEEEeCCC
Q psy4099 5 LSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCN------PTCGDTDYLEVRDGGY 78 (190)
Q Consensus 5 ~~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~------~~C~~~d~l~i~~~~~ 78 (190)
....||+.++...|.|+||+||..||++.+|.|.|++++|++|.|+|..|+|+. + ..|. +|+|+|+||..
T Consensus 4 ~~~~Cg~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~---~~~~~~~~~C~-~D~l~i~dg~~ 79 (460)
T 2qqo_A 4 GSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEH---DPLQVGEGDCK-YDWLDIWDGIP 79 (460)
T ss_dssp ---CCCEEECSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCC---C--------CC-SSEEEEESSST
T ss_pred CCCCCCCEEeCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEccc---ccccccCCCCC-CCEEEEEcCCC
Confidence 345699999999999999999999999999999999999999999999999987 4 4799 99999999988
Q ss_pred CCCCceeeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEecccC------CCCCeeecCeeeE
Q psy4099 79 ESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAST------GCGGILTGSSGSI 141 (190)
Q Consensus 79 ~~~~~~~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~~------~C~~~~~~~~g~i 141 (190)
...++++++||...|..++|+++.|.|+|+++... ...||++.|++.+. .|+..+....|.|
T Consensus 80 ~~~~~~~~~CG~~~p~~i~S~~n~l~v~F~Sd~~~-~~~GF~~~y~~~~~~~~~~~~C~~~lg~~~G~I 147 (460)
T 2qqo_A 80 HVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAV-AKDGFSARYYLVHQEPLENFQCNVPLGMESGRI 147 (460)
T ss_dssp TTSCEEEEECTTCCCCCEEECSSEEEEEEECCSSC-CCCEEEEEEEEECC-------CCEECSTTTSCS
T ss_pred CCCcccceEeCCcCCcCEEeeCCEEEEEEecccee-ecCcEEEEEEEEecccccceecccccccccccc
Confidence 77888999999998889999999999999999998 89999999998753 4876554444443
No 12
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.94 E-value=1.4e-26 Score=151.68 Aligned_cols=107 Identities=24% Similarity=0.475 Sum_probs=98.1
Q ss_pred CCCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCce
Q psy4099 5 LSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQL 84 (190)
Q Consensus 5 ~~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~ 84 (190)
....||+.++..+|.|+|| |+++.+|.|.|++++|++|+|+|..|+|+ |. +|+|+|+||... .+++
T Consensus 5 ~~~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l~-------C~-~D~l~i~dg~~~-~~~~ 70 (116)
T 1spp_B 5 GPDECGRVIKDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNLA-------CG-KEYVEVFDGLLS-GPSY 70 (116)
T ss_dssp GGGGTTEEECCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEECC-------BT-TEEEEEESSSTT-SCEE
T ss_pred CCCCCCCEEeCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCccc-------CC-CCEEEEEcCCCC-Cccc
Confidence 4567999999999999998 67899999999999999999999999983 78 999999999875 6789
Q ss_pred eeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEeccc
Q psy4099 85 GIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS 127 (190)
Q Consensus 85 ~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~ 127 (190)
+++||.. |..++|+++.|+|+|+++... ..+||++.|++++
T Consensus 71 ~~~CG~~-p~~~~S~~n~l~v~F~Sd~~~-~~~GF~~~y~~~~ 111 (116)
T 1spp_B 71 GKLCAGA-AIVFLSTANTMTIKYNRISGN-SSSPFLIYFYGSS 111 (116)
T ss_dssp EEESEEE-EEEEECSSSEEEEEEEESSCS-CCCCCEEEEEEEC
T ss_pred ccccCcC-CCCEEecCCEEEEEEEECCCC-CCCCEEEEEEEeC
Confidence 9999987 789999999999999999998 9999999999863
No 13
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.94 E-value=1.7e-26 Score=149.64 Aligned_cols=105 Identities=28% Similarity=0.492 Sum_probs=95.7
Q ss_pred CCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy4099 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLG 85 (190)
Q Consensus 6 ~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~ 85 (190)
...||+.+++.+|.|+|| |+++.+|.|.|++++|++|+|+|..|++ .|. +|+|+|+||... .++++
T Consensus 3 ~~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l-------~C~-~D~l~I~dg~~~-~~~~~ 68 (109)
T 1spp_A 3 YHACGGRLTDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNL-------TCG-KEYVEVLEGAPG-SKSLG 68 (109)
T ss_dssp ECSSCEEEECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEEC-------CTT-TEEEEEESSSTT-SCEEE
T ss_pred ccCCCCEEeCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeec-------cCC-CCEEEEEeCCCC-Cchhh
Confidence 568999999999999998 6789999999999999999999999997 388 999999999875 67899
Q ss_pred eecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEeccc
Q psy4099 86 IYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS 127 (190)
Q Consensus 86 ~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~ 127 (190)
++||.. |..++| ++.|+|+|+++... ..+||++.|++.+
T Consensus 69 ~~CG~~-p~~~~S-~n~l~v~F~Sd~~~-~~~GF~~~y~~~~ 107 (109)
T 1spp_A 69 KFCEGL-SILNRG-SSGMTVKYKRDSGH-PASPYEIIFLRDS 107 (109)
T ss_dssp EESEEE-EEEEEE-CTTCEEEEEECTTC-CCCCCEEEEEEEC
T ss_pred hhhCCC-CCCEEE-CCEEEEEEEeCCCC-CCCCEEEEEEEeC
Confidence 999986 778899 99999999999988 8999999999753
No 14
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.94 E-value=5e-26 Score=148.64 Aligned_cols=107 Identities=27% Similarity=0.546 Sum_probs=97.3
Q ss_pred CCCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCce
Q psy4099 5 LSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQL 84 (190)
Q Consensus 5 ~~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~ 84 (190)
....||+.++..+|.|+|| |+++.+|.|.|++++|++|+|+|..|+| .|. +|+|+|+||... .+++
T Consensus 6 ~~~~Cgg~l~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l-------~C~-~D~l~i~dg~~~-~~~~ 71 (114)
T 1sfp_A 6 RNTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL-------NCN-KESLEIIDGLPG-SPVL 71 (114)
T ss_dssp EECSSCEEECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC-------CTT-TEEEEEESSSTT-SCEE
T ss_pred cCCCCCCeEECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeee-------ecC-CCEEEEEcCCCC-Ccce
Confidence 3568999999999999998 6789999999999999999999999997 388 999999999874 6788
Q ss_pred eeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEeccc
Q psy4099 85 GIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS 127 (190)
Q Consensus 85 ~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~ 127 (190)
+++||.. |..++|+++.|+|+|+++... ..+||+|.|++.+
T Consensus 72 ~~~CG~~-p~~~~S~~n~l~v~F~Sd~~~-~~~GF~~~y~~~p 112 (114)
T 1sfp_A 72 GKICEGS-LMDYRSSGSIMTVKYIREPEH-PASFYEVLYFQDP 112 (114)
T ss_dssp EEESEEE-EEEEECSSSEEEEEEEECTTS-CCCCCEEEEEEES
T ss_pred eEecCcC-CCCEEecCCeEEEEEEECCCC-CCCCEEEEEEEEc
Confidence 9999987 779999999999999999988 8999999999753
No 15
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.94 E-value=1e-25 Score=157.29 Aligned_cols=115 Identities=31% Similarity=0.541 Sum_probs=101.9
Q ss_pred CCCc-eEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceee
Q psy4099 8 TCGG-NFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGI 86 (190)
Q Consensus 8 ~Cg~-~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~ 86 (190)
.||+ .+++.+|.|+||+||..|+++.+|.|.|+++++++|+|+|..|+|+. ...|. +|+|+|+||. ..+++
T Consensus 2 p~G~~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~---~~~C~-~D~l~i~dg~----~~~~~ 73 (170)
T 1szb_A 2 PLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLEL---SHLCE-YDFVKLSSGA----KVLAT 73 (170)
T ss_dssp CCCCCCCCCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCC---CTTSC-SSEEEEESSS----SEEEE
T ss_pred CCccceEcCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccC---CCCCC-CCEEEEEeCC----ccccc
Confidence 3555 67889999999999999999999999999999999999999999998 78999 9999999985 46899
Q ss_pred ecCCC------CC--CceEeeCCEEEEEEEeCCCCCcc--CCceEEEeccc-CCCC
Q psy4099 87 YCCKN------HP--GEITSSGHQLYIKFFSDDDRFKY--PGFKITWDSAS-TGCG 131 (190)
Q Consensus 87 ~cg~~------~~--~~~~s~~~~~~i~f~s~~~~~~~--~gf~~~y~~~~-~~C~ 131 (190)
+||.. .| ..++|+++.|+|+|+++... .. .||++.|...+ ..|.
T Consensus 74 ~CG~~~~~~~~~P~~~~~~S~~n~l~v~F~Sd~~~-~~~~~Gf~~~~~~~di~eC~ 128 (170)
T 1szb_A 74 LCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSN-EKPFTGFEAFYAAEDIDECQ 128 (170)
T ss_dssp ECSBTTTTCSSSCTTCCEECSSSEEEEEEECCSCC-SSCCCEEEEEEEEEECCTTC
T ss_pred cCCCCCCccccCCCCceEEeeCCeEEEEEeccccc-cCcCcCceeeeeccccCccc
Confidence 99987 46 68999999999999999887 65 99999998753 4564
No 16
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.93 E-value=7.8e-26 Score=156.26 Aligned_cols=112 Identities=26% Similarity=0.500 Sum_probs=96.5
Q ss_pred EecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecCCCCCCCCCcEEEEEeCCCCCCCceeeecCCCC
Q psy4099 13 FYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCCKNH 92 (190)
Q Consensus 13 ~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~~~cg~~~ 92 (190)
+++.+|.|+||+||..|+++.+|.|.|++++|++|+|+|..|+|+. +..|. +|+|+|+||. ..++++||...
T Consensus 1 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~---~~~C~-~D~l~i~dg~----~~~~~~CG~~~ 72 (159)
T 1nzi_A 1 EPTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIEL---SENCA-YDSVQIISGD----TEEGRLCGQRS 72 (159)
T ss_dssp CCCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCC---CGGGC-SSEEEEEC-------CCEEECSEEC
T ss_pred CCCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecC---CCCCC-CCEEEEEeCC----chhcccCCCCC
Confidence 3567899999999999999999999999999999999999999998 78999 9999999985 36789999876
Q ss_pred C--------CceEeeCCEEEEEEEeCCCCCcc--CCceEEEeccc-CCCCCe
Q psy4099 93 P--------GEITSSGHQLYIKFFSDDDRFKY--PGFKITWDSAS-TGCGGI 133 (190)
Q Consensus 93 ~--------~~~~s~~~~~~i~f~s~~~~~~~--~gf~~~y~~~~-~~C~~~ 133 (190)
+ ..++|+++.|+|+|+++... .. +||.+.|..++ ..|...
T Consensus 73 ~~~~~~P~~~~~~S~~n~l~v~F~Sd~~~-~~~~~GF~~~y~~~d~~eC~~~ 123 (159)
T 1nzi_A 73 SNNPHSPIVEEFQVPYNKLQVIFKSDFSN-EERFTGFAAYYVATDINECTDF 123 (159)
T ss_dssp CCCSSCCCSEEEEESSSEEEEEEEECSCC-TTCCCEEEEEEEEEECCTTTC-
T ss_pred CCcccCCcceeEEecCCeEEEEEEecCcc-CcccccceeeeecccCcccCCC
Confidence 4 36999999999999999887 54 89999999764 467653
No 17
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.93 E-value=1.2e-25 Score=183.34 Aligned_cols=126 Identities=30% Similarity=0.619 Sum_probs=113.6
Q ss_pred cCCCCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeecC---CCCCCCCCcEEEEEeCCCCC
Q psy4099 4 NLSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYF---CNPTCGDTDYLEVRDGGYES 80 (190)
Q Consensus 4 ~~~~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~~---~~~~C~~~d~l~i~~~~~~~ 80 (190)
.....|++.+++.+|.|.||+||..|+++++|.|.|++++|.+|.|+|..|+|+... ....|. +|+|+|+||....
T Consensus 124 ~~~~~C~~~~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~~~~~~~~~C~-~D~l~I~dG~~~~ 202 (577)
T 4gz9_A 124 KRGPECSQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGMFCR-YDRLEIWDGFPEV 202 (577)
T ss_dssp CCCCEEEEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCCCSCSTTCCCC-SSEEEEESSSTTT
T ss_pred ecCcccceeecCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeecCCCCCCCccC-ccEEEEEcCCCCC
Confidence 345579999999999999999999999999999999999999999999999998721 112499 9999999999888
Q ss_pred CCceeeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEecccCCCC
Q psy4099 81 SPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSASTGCG 131 (190)
Q Consensus 81 ~~~~~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~~~C~ 131 (190)
.++++++||...|..++|+++.|+|+|++|... ..+||+|.|++++..|.
T Consensus 203 ~~~lg~~CG~~~P~~i~S~~n~l~i~F~SD~s~-~~~GF~a~y~~v~~~~s 252 (577)
T 4gz9_A 203 GPHIGRYCGQKTPGRIRSSSGVLSMVFYTDSAI-AKEGFSANYSVLQSSIS 252 (577)
T ss_dssp SCEEEEECSSSCCCCEEECSSEEEEEEECCSSC-CCCEEEEEEEECCCCCC
T ss_pred CceeEEEeCCCCCCCcceeCCEEEEEEEECCCC-CCceEEEEEEEEccccc
Confidence 899999999999999999999999999999999 99999999999865544
No 18
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.92 E-value=9e-25 Score=164.35 Aligned_cols=112 Identities=30% Similarity=0.664 Sum_probs=98.5
Q ss_pred CCCce-EecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEe-EeEEeecCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy4099 8 TCGGN-FYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNPTCGDTDYLEVRDGGYESSPQLG 85 (190)
Q Consensus 8 ~Cg~~-~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~-~f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~ 85 (190)
.||+. +++.+|.|+||+||..|+++.+|.|.|++++|++|.|+|. .|+|+.. ....|. +|+|+|++|. ++++
T Consensus 164 ~Cg~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~-~~~~C~-~D~l~i~dg~----~~~~ 237 (286)
T 1nt0_A 164 LCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMH-PEAQCP-YDSLKIQTDK----REYG 237 (286)
T ss_dssp CCEEEEECSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC-----C---CEEEEECSS----CEEE
T ss_pred cccCceecCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccC-CCCCCC-CcEEEEEeCC----cceE
Confidence 68887 7889999999999999999999999999999999999996 8999861 025899 9999999973 5789
Q ss_pred eecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEecc
Q psy4099 86 IYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSA 126 (190)
Q Consensus 86 ~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~ 126 (190)
++||...|..++|+++.|+|+|+++... ..+||+|.|++.
T Consensus 238 ~~CG~~~p~~~~S~~n~l~i~F~sd~~~-~~~GF~~~y~~~ 277 (286)
T 1nt0_A 238 PFCGKTLPPRIETDSNKVTITFTTDESG-NHTGWKIHYTST 277 (286)
T ss_dssp EECBSSCCCCEECSSSEEEEEEECCSCC-CCCBCEEEEEEE
T ss_pred EEcCCCCCCCEEeeCCEEEEEEEeCCCC-CCCCEEEEEEEe
Confidence 9999999899999999999999999998 999999999975
No 19
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=165.38 Aligned_cols=152 Identities=24% Similarity=0.543 Sum_probs=129.4
Q ss_pred CCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeE-eEEeecCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy4099 7 TTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTT-FQLERYFCNPTCGDTDYLEVRDGGYESSPQLG 85 (190)
Q Consensus 7 ~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~-f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~~ 85 (190)
..|++.++..+|.|+||+||..|+.+.+|.|.|++++|++|.|+|.. |+++. .....|. +|+|+|++|. ..++
T Consensus 165 ~~c~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~-~~~~~C~-~D~l~i~dg~----~~~~ 238 (361)
T 4aqb_A 165 ECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIED-HPEVPCP-YDYIKIKVGP----KVLG 238 (361)
T ss_dssp CCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCC-CSSSSSS-SSEEEEEETT----EEEE
T ss_pred ccccceEeCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccC-CccCccC-CCeEEEeeCC----eeEE
Confidence 45788889999999999999999999999999999999999999986 55554 2244799 9999999984 4689
Q ss_pred eecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEecccCCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCC
Q psy4099 86 IYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQG 165 (190)
Q Consensus 86 ~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~ 165 (190)
++||...|..+.|+++.|+|+|++|... ..+||+|+|++....|........|.+..++....+. -.+.+...+|
T Consensus 239 ~~cG~~~p~~~~s~~n~~~i~F~SD~~~-~~~GF~~~y~~~~~~C~~~~~p~~G~~~~~~~~~~~g----~~v~~~C~~G 313 (361)
T 4aqb_A 239 PFCGEKAPEPISTQSHSVLILFHSDNSG-ENRGWRLSYRAAGNECPELQPPVHGKIEPSQAKYFFK----DQVLVSCDTG 313 (361)
T ss_dssp EECBSSCCCCEECSCSEEEEEEECCSCC-CCCBCEEEEEEECCEECCCCCCTTEEEESCCSSEETT----CEEEEEECTT
T ss_pred eeCCCCCCCCEeecCCeEEEEEEeCCCC-CccceEEEEEEccCCCCCCCCCCCCEEecCCCCcccC----CEEEEEeCCC
Confidence 9999999999999999999999999999 9999999999998889877767788888766543332 3567788899
Q ss_pred CEEE
Q psy4099 166 SSIT 169 (190)
Q Consensus 166 ~~i~ 169 (190)
+.+.
T Consensus 314 Y~l~ 317 (361)
T 4aqb_A 314 YKVL 317 (361)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 8765
No 20
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.92 E-value=2.6e-24 Score=175.99 Aligned_cols=133 Identities=33% Similarity=0.584 Sum_probs=110.9
Q ss_pred CCCCceEecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeEeEEeec---CCCCCCCCCcEEEEEeCCCCCCCc
Q psy4099 7 TTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERY---FCNPTCGDTDYLEVRDGGYESSPQ 83 (190)
Q Consensus 7 ~~Cg~~~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~f~l~~~---~~~~~C~~~d~l~i~~~~~~~~~~ 83 (190)
..|++.++..+|.|+||+||..|+++..|.|.|+++++.+|.|.|..|+|+.. .....|. +|+|+|+||.....++
T Consensus 125 ~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~~~~~~~~~C~-~D~l~I~dg~~~~~~~ 203 (579)
T 2qqk_A 125 EDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCK-YDWLDIWDGIPHVGPL 203 (579)
T ss_dssp CCCCCEECCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC--------------CCEEEEESSSTTTSCE
T ss_pred ccccceeccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecccccccCCCCC-CEEEEEEeCCCCCCce
Confidence 45999999999999999999999999999999999999999999999999861 0014799 9999999998877888
Q ss_pred eeeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEeccc------CCCCCeeecCeeeE
Q psy4099 84 LGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS------TGCGGILTGSSGSI 141 (190)
Q Consensus 84 ~~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~~~------~~C~~~~~~~~g~i 141 (190)
++++||...|..++|+++.|.|+|+++... ..+||.+.|++.. ..|...+....|.|
T Consensus 204 ~~~~CG~~~p~~i~S~~n~l~i~F~sd~~~-~~~GF~~~y~~~~~~~~~~~~C~~~lg~~~g~I 266 (579)
T 2qqk_A 204 IGKYCGTKTPSELRSSTGILSLTFHTDMAV-AKDGFSARYYLVHQEPLENFQCNVPLGMESGRI 266 (579)
T ss_dssp EEEECSSSCCCCEEECSSEEEEEEECCSSC-CCCEEEEEEEEEECCCCSSCCSCEECSTTTSSS
T ss_pred eEEeCCCCCCCcEEeeCCeEEEEEeccccc-cccceEEEEEEEecccccCCeEecccccccccc
Confidence 999999998999999999999999999998 9999999999864 35776554444443
No 21
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=161.06 Aligned_cols=112 Identities=29% Similarity=0.718 Sum_probs=100.9
Q ss_pred CCCCce-EecCceEEECCCCCCCCCCCCceEEEEEcCCCCeEEEEEeE-eEEeecCCCCCCCCCcEEEEEeCCCCCCCce
Q psy4099 7 TTCGGN-FYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTT-FQLERYFCNPTCGDTDYLEVRDGGYESSPQL 84 (190)
Q Consensus 7 ~~Cg~~-~~~~~G~i~SP~~p~~y~~~~~C~w~I~~~~~~~i~l~f~~-f~l~~~~~~~~C~~~d~l~i~~~~~~~~~~~ 84 (190)
..|++. +++..|.|+||+||..|+++..|.|.|++++|++|.|+|.+ |+|+.. ....|. +|+|+|++|. ..+
T Consensus 164 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~-~~~~C~-~D~l~i~dg~----~~~ 237 (278)
T 3dem_A 164 VECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDH-PEVPCP-YDYIKIKVGP----KVL 237 (278)
T ss_dssp CCCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCC-SSSSSS-SCEEEEEETT----EEE
T ss_pred ccCCCceecCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccC-CCCCCC-CCEEEEecCC----ccc
Confidence 468875 57889999999999999999999999999999999999997 999861 134799 9999999985 357
Q ss_pred eeecCCCCCCceEeeCCEEEEEEEeCCCCCccCCceEEEec
Q psy4099 85 GIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125 (190)
Q Consensus 85 ~~~cg~~~~~~~~s~~~~~~i~f~s~~~~~~~~gf~~~y~~ 125 (190)
+++||...|..++|+++.|+|+|++|... ..+||+|+|++
T Consensus 238 ~~~CG~~~p~~~~s~~~~l~v~F~sd~~~-~~~GF~~~y~~ 277 (278)
T 3dem_A 238 GPFCGEKAPEPISTQSHSVLILFHSDNSG-ENRGWRLSYRA 277 (278)
T ss_dssp EEECBSSCCCCEECSCSEEEEEEECCSSC-CCCBCEEEEEE
T ss_pred ccccCCCCCCCEEEcCCEEEEEEEECCCC-CcCCEEEEEEE
Confidence 89999999999999999999999999998 99999999986
No 22
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=117.49 Aligned_cols=61 Identities=33% Similarity=0.637 Sum_probs=58.4
Q ss_pred CCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 128 TGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 128 ~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
..|++.++...|.|.||+||..||++.+|.|.|++++|++|+|+|.+|+||.+..|.+||.
T Consensus 5 ~~Cgg~l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~~~C~~D~l 65 (149)
T 2wno_A 5 KECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYV 65 (149)
T ss_dssp SCCCEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCCTTCCSSEE
T ss_pred CCCCCEEECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCCCCCCCCEE
Confidence 5799999999999999999999999999999999999999999999999999889999964
No 23
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.71 E-value=7.2e-18 Score=109.99 Aligned_cols=61 Identities=30% Similarity=0.498 Sum_probs=55.1
Q ss_pred CCCCCee-ecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEe-EEeeCCCC--CCCcccc
Q psy4099 128 TGCGGIL-TGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSL-DVQLDCNK--LLASDLE 188 (190)
Q Consensus 128 ~~C~~~~-~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~-~f~l~~~~--~C~~d~~ 188 (190)
..||+.+ +...|.|.||+||..||++.+|.|.|++|+|++|+|+|. .|+||... .|.+||.
T Consensus 2 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~~~~~C~~D~l 66 (115)
T 3poj_A 2 VECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYI 66 (115)
T ss_dssp -CEEEEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCCSSSSSCSCEE
T ss_pred eECCCceEcCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccCCCCCCCCeEE
Confidence 3698885 789999999999999999999999999999999999999 59999854 9999964
No 24
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.68 E-value=8.5e-17 Score=111.96 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=54.8
Q ss_pred CCC-eeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 130 CGG-ILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 130 C~~-~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
||+ .+++..|.|.||+||..||++.+|.|.|++|+|++|+|+|.+|+||....|.+||.
T Consensus 3 ~G~~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l 62 (170)
T 1szb_A 3 LGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFV 62 (170)
T ss_dssp CCCCCCCCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCCTTSCSSEE
T ss_pred CccceEcCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCCCCCCCCEE
Confidence 554 67788999999999999999999999999999999999999999999999999964
No 25
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.66 E-value=1.1e-16 Score=110.29 Aligned_cols=55 Identities=27% Similarity=0.442 Sum_probs=51.7
Q ss_pred eecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 134 LTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 134 ~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
+++..|.|.||+||..||++.+|.|.|++++|++|+|+|.+|+||....|.+||+
T Consensus 1 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l 55 (159)
T 1nzi_A 1 EPTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSV 55 (159)
T ss_dssp CCCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEE
T ss_pred CCCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCCCCCCCCEE
Confidence 3567899999999999999999999999999999999999999999889999964
No 26
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.57 E-value=2.7e-15 Score=119.30 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=57.1
Q ss_pred CCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCC------CCCcccc
Q psy4099 128 TGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNK------LLASDLE 188 (190)
Q Consensus 128 ~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~------~C~~d~~ 188 (190)
..|++.++...|.|.||+||..||++.+|.|.|++|+|++|+|.|.+|+||.+. .|.+||.
T Consensus 9 ~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~~~~~~~C~~D~l 75 (450)
T 2qqm_A 9 PECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRL 75 (450)
T ss_dssp CTTCEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC----CCCSSCSSEE
T ss_pred CCCCCeEeCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEeccCCCCCCCCCCcEE
Confidence 579999999999999999999999999999999999999999999999999865 8999964
No 27
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.56 E-value=5.5e-15 Score=117.82 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=55.5
Q ss_pred CCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCC------CCCCcccc
Q psy4099 128 TGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCN------KLLASDLE 188 (190)
Q Consensus 128 ~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~------~~C~~d~~ 188 (190)
..|++.++...|.|.||+||..||++.+|.|.|++|+|++|.|.|.+|+||.+ ..|.+||.
T Consensus 6 ~~Cg~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~~~~~~~C~~D~l 72 (460)
T 2qqo_A 6 EDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWL 72 (460)
T ss_dssp -CCCEEECSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC--------CCSSEE
T ss_pred CCCCCEEeCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccccccccCCCCCCCEE
Confidence 46999999999999999999999999999999999999999999999999985 48999964
No 28
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.52 E-value=3e-14 Score=91.80 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=48.2
Q ss_pred CCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 128 TGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 128 ~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
..|++.++...|.|.|| ||++.+|.|.|++|+|++|+|+|.+|+| .|.+||.
T Consensus 4 ~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l 55 (109)
T 1spp_A 4 HACGGRLTDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNL----TCGKEYV 55 (109)
T ss_dssp CSSCEEEECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEEC----CTTTEEE
T ss_pred cCCCCEEeCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeec----cCCCCEE
Confidence 57999999999999998 8899999999999999999999999998 6888864
No 29
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.49 E-value=5.2e-14 Score=91.67 Aligned_cols=53 Identities=19% Similarity=0.413 Sum_probs=48.7
Q ss_pred cCCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 127 STGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 127 ~~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
...||+.++...|.|.|| ||++.+|.|.|++|+|++|+|+|.+|+| .|.+||.
T Consensus 6 ~~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l 58 (116)
T 1spp_B 6 PDECGRVIKDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNL----ACGKEYV 58 (116)
T ss_dssp GGGTTEEECCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEEC----CBTTEEE
T ss_pred CCCCCCEEeCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCcc----cCCCCEE
Confidence 457999999999999998 7889999999999999999999999999 6888864
No 30
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.49 E-value=7.8e-14 Score=90.57 Aligned_cols=54 Identities=30% Similarity=0.485 Sum_probs=49.0
Q ss_pred ccCCCCCeeecCeeeEECCCCCCCCCCCcceEEEEEeCCCCEEEEEEeEEeeCCCCCCCcccc
Q psy4099 126 ASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASDLE 188 (190)
Q Consensus 126 ~~~~C~~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~~ 188 (190)
....||+.++...|.|.|| ||++.+|.|.|++|+|++|+|+|.+|+| .|.+||.
T Consensus 6 ~~~~Cgg~l~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l 59 (114)
T 1sfp_A 6 RNTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL----NCNKESL 59 (114)
T ss_dssp EECSSCEEECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC----CTTTEEE
T ss_pred cCCCCCCeEECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeee----ecCCCEE
Confidence 3467999999999999997 7889999999999999999999999998 7888864
Done!