RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4099
(190 letters)
>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins
mostly known to be involved in development; not found in
prokaryotes, plants and yeast.
Length = 113
Score = 126 bits (319), Expect = 4e-38
Identities = 52/116 (44%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 9 CGGNFYSP-EGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGD 67
CGG + GT++SP YP+ YP N+ CVWT+ P G +IRL F F LE +P C
Sbjct: 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLE---SSPNC-S 56
Query: 68 TDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
DYLE+ DG SSP LG +C P I SSG+ L ++F SD GFK T+
Sbjct: 57 YDYLEIYDGPSTSSPLLGRFCGSTLPPPIISSGNSLTVRFRSDSSV-TGRGFKATY 111
Score = 50.5 bits (121), Expect = 1e-08
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 130 CGGILTGS-SGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
CGG LT S SG+I SP YP Y C W I G I L
Sbjct: 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRL 42
>gnl|CDD|215916 pfam00431, CUB, CUB domain.
Length = 110
Score = 120 bits (304), Expect = 9e-36
Identities = 53/114 (46%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
CGG G++TSP YP+ YPPN CVWT+ P G +I L F F LE + CG
Sbjct: 1 CGGVLTESSGSITSPNYPNSYPPNKDCVWTIRAPPGYRISLTFQDFDLEDH---DECG-Y 56
Query: 69 DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKIT 122
DY+E+RDG SSP LG +C P +I S+ +Q+ IKF SD K GFK T
Sbjct: 57 DYVEIRDGLPSSSPLLGRFCGSGPPEDIRSTSNQMTIKFVSDSSISK-RGFKAT 109
Score = 50.4 bits (121), Expect = 1e-08
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 130 CGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
CGG+LT SSGSI SP YP Y C W I G I+L
Sbjct: 1 CGGVLTESSGSITSPNYPNSYPPNKDCVWTIRAPPGYRISL 41
>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone
morphogenetic protein. This domain is found mostly
among developmentally-regulated proteins. Spermadhesins
contain only this domain.
Length = 102
Score = 108 bits (272), Expect = 4e-31
Identities = 46/107 (42%), Positives = 59/107 (55%), Gaps = 6/107 (5%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGG 77
GT+TSP YP YP N+ CVWT+ P G +I L FT F LE + C + DY+E+ DG
Sbjct: 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLE---SSDNC-EYDYVEIYDGP 56
Query: 78 YESSPQLGIYCCKNHPGE-ITSSGHQLYIKFFSDDDRFKYPGFKITW 123
SSP LG +C P I+SS + L + F SD K GF +
Sbjct: 57 SASSPLLGRFCGSEAPPPVISSSSNSLTLTFVSDSSVQK-RGFSARY 102
Score = 39.7 bits (93), Expect = 9e-05
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 139 GSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
G+I SP YP Y C W I G I L
Sbjct: 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIEL 32
>gnl|CDD|190301 pfam02408, CUB_2, CUB-like domain. This is a family of
hypothetical C. elegans proteins. The aligned region has
no known function nor do any of the proteins which
possess it. However, this domain is related to the CUB
domain.
Length = 119
Score = 32.3 bits (74), Expect = 0.053
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 31/100 (31%)
Query: 26 PDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLG 85
P +P N C W + VP+G ++ + D + V D
Sbjct: 34 PPQFPANQNCSWNINVPKGYYAKVTISA----------KTDDDSSITVTD---------- 73
Query: 86 IYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125
+ IT S + Y F P F I +
Sbjct: 74 ---SLGNSEYITDSDSEPYF--------FVSPKFTINLST 102
>gnl|CDD|100088 cd03086, PGM3, PGM3 (phosphoglucomutase 3), also known as PAGM
(phosphoacetylglucosamine mutase) and AGM1
(N-acetylglucosamine-phosphate mutase), is an essential
enzyme found in eukaryotes that reversibly catalyzes the
conversion of GlcNAc-6-phosphate into GlcNAc-1-phosphate
as part of the UDP-N-acetylglucosamine (UDP-GlcNAc)
biosynthetic pathway. UDP-GlcNAc is an essential
metabolite that serves as the biosynthetic precursor of
many glycoproteins and mucopolysaccharides. AGM1 is a
member of the alpha-D-phosphohexomutase superfamily,
which catalyzes the intramolecular phosphoryl transfer
of sugar substrates. The alpha-D-phosphohexomutases have
four domains with a centrally located active site formed
by four loops, one from each domain. All four domains
are included in this alignment model.
Length = 513
Score = 27.6 bits (62), Expect = 5.1
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 72 EVRDGGYESSPQLG-IYCCKNHPGEITSSGHQLYIKFFSD 110
V D G ++PQL + N G + Y + S
Sbjct: 132 NVIDYGLVTTPQLHYLVRAANTEGAYGEPTEEGYYEKLSK 171
>gnl|CDD|218903 pfam06122, TraH, Conjugative relaxosome accessory transposon
protein. The TraH protein is thought to be a relaxosome
accessory component, also necessary for transfer but not
for H-pilus synthesis within the conjugative transposon.
Length = 360
Score = 26.9 bits (60), Expect = 6.4
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 119 FKITWDSASTGCGGI-LTGSSGSIIS 143
IT S S GCGGI L S S I+
Sbjct: 45 VSITLPSVSAGCGGIDLFLGSFSFIN 70
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 27.2 bits (61), Expect = 6.8
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 28 PYPPNMLCVWTLTVPRGQQIRLNFTTFQ 55
P P + W L GQ L++ +
Sbjct: 252 PLLPQFVLPWNLPGADGQPFTLSWDLIR 279
>gnl|CDD|222786 PHA00371, mat, maturation protein.
Length = 418
Score = 27.1 bits (60), Expect = 7.4
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 4 NLSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVW 37
++ G F +T +P PY V
Sbjct: 35 DIYRGKGVWFERTPYIVTDWVHPSPYWRGKTTVE 68
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.462
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,625,393
Number of extensions: 847618
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 18
Length of query: 190
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 99
Effective length of database: 6,901,388
Effective search space: 683237412
Effective search space used: 683237412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)