RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4099
(190 letters)
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 171 bits (435), Expect = 5e-51
Identities = 63/175 (36%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 8 TCGGNFYSPE-GTLTSPQYPDPYPPNMLCVWTLTVP-RGQQIRLNFTTFQLERYFCNPTC 65
CGG S + G +TSP YP YP + C W + P Q+I LNF C
Sbjct: 5 PCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIE---KHDC 61
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125
D++E+RDG ES+ LG +C P I SSG LYIKF SD R + GF + ++
Sbjct: 62 KY-DFIEIRDGDSESADLLGKHCGNIAPPTIISSGSMLYIKFTSDYAR-QGAGFSLRYEI 119
Query: 126 ASTG---CGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQL 177
TG C T +G+I SPG+P Y + C + I I L L L
Sbjct: 120 FKTGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDL 174
Score = 125 bits (314), Expect = 7e-34
Identities = 44/167 (26%), Positives = 63/167 (37%), Gaps = 3/167 (1%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
S C NF SP GT+ SP +P+ YP N+ C +T+ +I L F F LE
Sbjct: 124 SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGE 183
Query: 66 GD--TDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
GD D+L++ DG P +G YC P E+ SS L + F +D K GF +
Sbjct: 184 GDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMAVAKD-GFSARY 242
Query: 124 DSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
+ + G + + L
Sbjct: 243 YLVHQEPLENFQCNVPLGMESGRIANEQISASSTYSDGRWTPQQSRL 289
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 167 bits (424), Expect = 3e-50
Identities = 79/185 (42%), Positives = 106/185 (57%), Gaps = 4/185 (2%)
Query: 2 AVNLSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFC 61
A++ +T C ++ GT TSP +P+ YP N C++ +TV GQ I ++FT F LE
Sbjct: 110 AISAATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEE--- 166
Query: 62 NPTCGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKI 121
TD+LE+RDGGYE SP LGI+ N P I S ++L++KF SD GF
Sbjct: 167 AIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPPTIISHSNKLWLKFKSDQ-IDTRSGFSA 225
Query: 122 TWDSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNK 181
WD +STGCGG LT SSG+ ISP YP PY + + CYW + S GS+ L D L+ +
Sbjct: 226 YWDGSSTGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHP 285
Query: 182 LLASD 186
D
Sbjct: 286 NCTLD 290
Score = 154 bits (390), Expect = 2e-45
Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
CG GT+ SP +P+ YP + C W + V I L F TF LE + C
Sbjct: 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEF---HYNC-TN 56
Query: 69 DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS--A 126
DYLEV D +S LG YC K+ P +TSSG+ L + F +D D Y GF I +++ A
Sbjct: 57 DYLEVYDT--DSETSLGRYCGKSIPPSLTSSGNSLMLVFVTDSDL-AYEGFLINYEAISA 113
Query: 127 STGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLD 178
+T C T G+ SP +P Y C ++I V G I + + L+
Sbjct: 114 ATACLQDYTDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLE 165
Score = 153 bits (387), Expect = 8e-45
Identities = 59/172 (34%), Positives = 79/172 (45%), Gaps = 6/172 (3%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
ST CGGN + GT SP YP PY + C W L G L F F LE +P C
Sbjct: 231 STGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEH---HPNC 287
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125
DYL V DG +S L C P I SSG ++IK +D+ + + GFK +
Sbjct: 288 TL-DYLAVYDGPSSNSHLLTQLCGDEKPPLIRSSGDSMFIKLRTDEGQ-QGRGFKAEY-R 344
Query: 126 ASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQL 177
+ I+ + G + S GYP PY+ C W I + G+++ L L
Sbjct: 345 QTCENVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDL 396
Score = 105 bits (264), Expect = 3e-27
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
G L S YP+PY N C WT+ G + F F LE + C T
Sbjct: 349 NVVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEH---HINC-ST 404
Query: 69 DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
DYLE+ DG Q+G YC + P +++ +L + +D + GF++ W
Sbjct: 405 DYLELYDG----PRQMGRYCGVDLPPPGSTTSSKLQVLLLTDGVGRREKGFQMQW 455
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell
adhesion, extracellular matrix; 2.30A {Homo sapiens}
Length = 149
Score = 142 bits (361), Expect = 4e-44
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
+ CGG F P+ SP +P+ Y N +C W + + GQ+I L+F F LE +P C
Sbjct: 4 AKECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLED---DPGC 60
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW-- 123
DY+E+ D + +G YC P +I S+G+ + +KF SD GF+I +
Sbjct: 61 -LADYVEIYDSYDDVHGFVGRYCGDELPDDIISTGNVMTLKFLSDAS-VTAGGFQIKYVA 118
Query: 124 -DSASTGCGGILTGSSGSIISPGYPYPY 150
D S G S+ S + +
Sbjct: 119 MDPVSKSSQGK-NTSTTSTGNKNFLAGR 145
Score = 58.9 bits (143), Expect = 1e-11
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 124 DSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
+ + CGG+ T SPG+P Y CYW I + G I L
Sbjct: 1 NPHAKECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHL 47
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 133 bits (337), Expect = 4e-39
Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 53/207 (25%)
Query: 13 FYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLE 72
+ G + SP YPD YP + W +TVP G +I+L F F LE + C DY++
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES---SYLCEY-DYVK 60
Query: 73 VRDGGYESSPQLGIYCCKN----HPGEITSSGHQLYIKFFSDDDR-FKYPGFKITWDSAS 127
V + G + S G + I F SD ++ GF + +
Sbjct: 61 VETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVD 120
Query: 128 TG--------------------------------------------CGGILTGSSGSIIS 143
+ T +G I S
Sbjct: 121 VDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITS 180
Query: 144 PGYPYPYAYRTTCYWKIYVSQGSSITL 170
P +P PY + C + I + +G + L
Sbjct: 181 PDFPNPYPKSSECLYTIELEEGFMVNL 207
Score = 114 bits (287), Expect = 1e-31
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
F G +TSP +P+PYP + C++T+ + G + L F C
Sbjct: 167 SDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPC-PY 225
Query: 69 DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSA 126
DY++++ G LG +C + P I++ H + I F SD+ + G+++++ +A
Sbjct: 226 DYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILFHSDNS-GENRGWRLSYRAA 278
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 135 bits (342), Expect = 2e-38
Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 3/169 (1%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
C N+ +P G + SP +P+ YP ++ C + + P+ +I L F +F LE P
Sbjct: 8 GPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGG 67
Query: 66 GD--TDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
D LE+ DG + P +G YC + PG I SS L + F++D GF +
Sbjct: 68 MFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYTDSA-IAKEGFSANY 126
Query: 124 DSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWS 172
+ + G + + + S S +
Sbjct: 127 SVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYP 175
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 130 bits (328), Expect = 1e-37
Identities = 50/209 (23%), Positives = 74/209 (35%), Gaps = 54/209 (25%)
Query: 12 NFYSPE-GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDY 70
+ P G L SP +P+ Y + WTLT P G ++RL FT F LE + C + D+
Sbjct: 2 KWPEPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLEL---SYRC-EYDF 57
Query: 71 LEVRDGGYESSPQLGIYCCKNHPG----EITSSGHQLYIKFFSDDDRFK----------- 115
+++ G + G S G L + F SD K
Sbjct: 58 VKLTSGTKVLATLCGQESTDTERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEAFYAA 117
Query: 116 ----------------------------------YPGFKITWDSASTGCGGILTGSSGSI 141
Y + ++ G + TG SG +
Sbjct: 118 EDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSALCSGQVFTGRSGFL 177
Query: 142 ISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
SP YP PY ++C + I + +G SITL
Sbjct: 178 SSPEYPQPYPKLSSCAYNIRLEEGFSITL 206
Score = 110 bits (276), Expect = 5e-30
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNPT 64
+ G F G L+SP+YP PYP C + + + G I L+F +F +E +
Sbjct: 163 ALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHP-EAQ 221
Query: 65 CGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWD 124
C D L+++ + G +C K P I + +++ I F + D+ + G+KI +
Sbjct: 222 CPY-DSLKIQTD----KREYGPFCGKTLPPRIETDSNKVTITFTT-DESGNHTGWKIHYT 275
Query: 125 SASTGC 130
S +
Sbjct: 276 STAQPH 281
Score = 43.0 bits (101), Expect = 2e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 136 GSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQL 177
G ++SPG+P Y W + G + L+ L
Sbjct: 6 PVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNL 47
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 130 bits (328), Expect = 5e-37
Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 10/168 (5%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
F G +TSP +P+PYP + C++T+ + G + L F C
Sbjct: 167 SDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPC-PY 225
Query: 69 DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAST 128
DY++++ G LG +C + P I++ H + I F SD+ + G+++++ +A
Sbjct: 226 DYIKIKVG----PKVLGPFCGEKAPEPISTQSHSVLILFHSDNSG-ENRGWRLSYRAAGN 280
Query: 129 GCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQ 176
C + G I Y + + G + ++++
Sbjct: 281 ECPELQPPVHGKIEPSQAKYFF----KDQVLVSCDTGYKVLKDNVEMD 324
Score = 128 bits (322), Expect = 4e-36
Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 53/207 (25%)
Query: 13 FYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLE 72
+ G + SP YPD YP + W +TVP G +I+L F F LE + C DY++
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLES---SYLCEY-DYVK 60
Query: 73 VRDGGYESSPQLGIYCCKN----HPGEITSSGHQLYIKFFSDDDR-FKYPGFKITWDSAS 127
V + G + S G + I F SD ++ GF + +
Sbjct: 61 VETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVD 120
Query: 128 TG--------------------------------------------CGGILTGSSGSIIS 143
+ T +G I S
Sbjct: 121 VDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITS 180
Query: 144 PGYPYPYAYRTTCYWKIYVSQGSSITL 170
P +P PY + C + I + +G + L
Sbjct: 181 PDFPNPYPKSSECLYTIELEEGFMVNL 207
Score = 47.7 bits (113), Expect = 5e-07
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 134 LTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNKLLASD 186
L G I SPGYP Y + W I V G I L+ + L+ + L D
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYD 57
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 125 bits (314), Expect = 6e-37
Identities = 37/157 (23%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 7 TTCGGNFYSPE-GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
T G + P G L SP +P Y + WTLT P G ++RL FT F LE + C
Sbjct: 1 TPLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLEL---SHLC 57
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHP----GEITSSGHQLYIKFFSDDDRFKYPGFKI 121
+ D++++ G + G S G L I F SD K P
Sbjct: 58 -EYDFVKLSSGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEK-PFTGF 115
Query: 122 TWDSASTGCGGILTGSSGSIISPGYP--YPYAYRTTC 156
A+ + + + + +C
Sbjct: 116 EAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSC 152
Score = 52.2 bits (125), Expect = 5e-09
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 128 TGCGGILT-GSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
T G G + SPG+P YA W + G + L
Sbjct: 1 TPLGPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRL 44
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 131 bits (331), Expect = 8e-37
Identities = 43/167 (25%), Positives = 62/167 (37%), Gaps = 3/167 (1%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
S C NF SP GT+ SP +P+ YP N+ C +T+ +I L F F LE
Sbjct: 5 SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGE 64
Query: 66 GD--TDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
GD D+L++ DG P +G YC P E+ SS L + F +D GF +
Sbjct: 65 GDCKYDWLDIWDGIPHVGPLIGKYCGTKTPSELRSSTGILSLTFHTDMA-VAKDGFSARY 123
Query: 124 DSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
+ + G + + L
Sbjct: 124 YLVHQEPLENFQCNVPLGMESGRIANEQISASSTYSDGRWTPQQSRL 170
Score = 63.2 bits (153), Expect = 3e-12
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 124 DSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL--WSLDVQLDCNK 181
D S C T +G+I SPG+P Y + C + I I L D++ D +
Sbjct: 2 DPGSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQ 61
Query: 182 LLASDLEFD 190
+ D ++D
Sbjct: 62 VGEGDCKYD 70
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 118 bits (299), Expect = 4e-35
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 9 CGGNFYS-PEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFT-TFQLERYFCNPTCG 66
C GN ++ GT+TSP YP+PYP + C +T+ + G + L F F +E + C
Sbjct: 4 CSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHP-EVPC- 61
Query: 67 DTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125
DY++++ G S G +C + P I++ H + I F SD+ + G+++++ +
Sbjct: 62 PYDYIKIKAG----SKVWGPFCGEKSPEPISTQSHSIQILFRSDNS-GENRGWRLSYRA 115
Score = 53.5 bits (129), Expect = 7e-10
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 130 CGG-ILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
C G + T +G+I SP YP PY + C + I + +G +TL
Sbjct: 4 CSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTL 45
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 119 bits (300), Expect = 8e-35
Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 13/149 (8%)
Query: 15 SPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVR 74
+ G + SP YP YP + W + VP G I L FT +E + C D +++
Sbjct: 3 TMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIEL---SENCAY-DSVQII 58
Query: 75 DGGYESSPQLGIYCCKNHPG----EITSSGHQLYIKFFSDDDRFKYPGFKITWDSASTGC 130
G E G N E ++L + F SD +
Sbjct: 59 SGDTEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFS-NEERFTGFAAY--YVAT 115
Query: 131 GGILTGSSGSIISPGYP--YPYAYRTTCY 157
+ + + Y +C
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCP 144
Score = 43.3 bits (102), Expect = 7e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 137 SSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITL 170
G I+SP YP Y W I V +G I L
Sbjct: 4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHL 37
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 111 bits (279), Expect = 3e-32
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 16/124 (12%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
+T CGG G + + Y P CVWT+ +P +R++ QL CN
Sbjct: 7 NTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN---CN--- 55
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125
+ LE+ DG SP LG C+ + SSG + +K+ + + +++ +
Sbjct: 56 --KESLEIIDGL-PGSPVLGKI-CEGSLMDYRSSGSIMTVKYIREPE-HPASFYEVLYFQ 110
Query: 126 ASTG 129
Sbjct: 111 DPQA 114
Score = 57.7 bits (140), Expect = 2e-11
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 121 ITWDSASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCN 180
+ W +T CGGIL SG I + P +T C W I + + + +QL+CN
Sbjct: 1 MDWLPRNTNCGGILKEESGVIATYYGP-----KTNCVWTIQMPPEYHVRVSIQYLQLNCN 55
Query: 181 K 181
K
Sbjct: 56 K 56
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 109
Score = 104 bits (261), Expect = 1e-29
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
CGG GT+ + + P CVWTL V ++ ++ T L CG
Sbjct: 6 CGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLT-------CGK- 52
Query: 69 DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAST 128
+Y+EV + G S LG +C + + +K+ D ++I + S
Sbjct: 53 EYVEVLE-GAPGSKSLGKFC--EGLSILNRGSSGMTVKYKRDSG-HPASPYEIIFLRDSQ 108
Query: 129 G 129
G
Sbjct: 109 G 109
Score = 55.1 bits (133), Expect = 1e-10
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 129 GCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNK 181
CGG LT G+I + P +T C W + V + + + L C K
Sbjct: 5 ACGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLTCGK 52
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 116
Score = 103 bits (258), Expect = 4e-29
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 16/127 (12%)
Query: 3 VNLSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCN 62
+N CG G++++ LC WT+ + Q++R+ L
Sbjct: 3 INGPDECGRVIKDTSGSISNTDRQ-----KNLCTWTILMKPDQKVRMAIPYLNLA----- 52
Query: 63 PTCGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKIT 122
CG +Y+EV D G S P G C S+ + + IK+ F I
Sbjct: 53 --CGK-EYVEVFD-GLLSGPSYGKLCAGAAI-VFLSTANTMTIKYNRISGN-SSSPFLIY 106
Query: 123 WDSASTG 129
+ +S G
Sbjct: 107 FYGSSPG 113
Score = 58.6 bits (142), Expect = 7e-12
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 125 SASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCNK 181
+ CG ++ +SGSI + C W I + + + + L C K
Sbjct: 4 NGPDECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLACGK 55
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 31.9 bits (73), Expect = 0.12
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 97 TSSGHQLYIK---FFSDDDRFKYPG-----FKITWDSASTGCGGILTGSSGSIIS 143
+ G++ I ++ F ++W+ A + GS+++
Sbjct: 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics,
NPPSFA, national project O structural and functional
analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1
c.27.1.1 PDB: 1v8g_A
Length = 329
Score = 29.0 bits (66), Expect = 0.96
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 64 TCGDTDYLEVRDGGYESSP-QLGI 86
G+ +EV G Y +P ++G+
Sbjct: 224 VLGENRVVEVGKGAYALTPEEVGL 247
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Bacillus subtilis}
Length = 246
Score = 27.7 bits (61), Expect = 2.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 136 GSSGSIISPGYPYPYAYRTTCYWK-IYVSQGSSITL 170
G+ II G Y A RT K I++S G+ I L
Sbjct: 163 GAYTDIIIDGEVYGRALRTRRDVKPIFLSCGNYIDL 198
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 27.5 bits (61), Expect = 2.5
Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 110 DDDRFKYPGFKITWDSASTGCGGILTGSSGSIISPGY 146
+++ K I + G + + G ++
Sbjct: 1 ENNVTKVKDTNIFPYT---GVVAFKSAT-GFVVGKNT 33
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure
funded by NI protein structure initiative, PSI; 2.30A
{Streptococcus pyogenes} SCOP: d.224.1.2
Length = 159
Score = 27.0 bits (60), Expect = 3.0
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 42 PRGQQIRLNFTTFQLERYFCNPTCGD--TDYLEVRDG 76
P QL NPTCGD + ++ +
Sbjct: 21 PHHHGQLDGVEAVQLN----NPTCGDVISLTVKFDED 53
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar
binding protein; HET: RAM; 1.80A {Oncorhynchus keta}
PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*
Length = 195
Score = 27.0 bits (59), Expect = 3.1
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 58 RYFCNPTCGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKF 107
F +P G YL+ + + + C+ ++ ++ I+
Sbjct: 75 FVFGDPCVGTYKYLDTKYSCVQQQETISSIICEGSDSQLLCDRGEIRIQR 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 3.3
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 12/62 (19%)
Query: 38 TLTV----PRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLGIYCCKNHP 93
LT+ +G++IR N++ E G ++ E S
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFE----TIVDGKLKTEKIFKEINEHSTSY----TFRSE 1722
Query: 94 GE 95
Sbjct: 1723 KG 1724
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding,
iron-sulfur cluster binding, three conserved Cys, three
beta strands; 1.85A {Thermus thermophilus}
Length = 138
Score = 25.8 bits (57), Expect = 6.8
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 62 NPTCGD--TDYLEVRDG 76
NP+CGD + +
Sbjct: 36 NPSCGDQVEVMVLLEGD 52
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur,
zinc, northeast structural genomics consortium, NESG;
NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Length = 147
Score = 25.8 bits (57), Expect = 7.3
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 62 NPTCGD--TDYLEVRDG 76
NPTCGD +++
Sbjct: 38 NPTCGDRIRLTMKLDGD 54
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus,
phosphoprotein, transcription, transcription
regulation, transposition; 1.43A {Saccharomyces
cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Length = 237
Score = 25.7 bits (56), Expect = 8.6
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 26 PDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLER 58
P P PN++ ++ L +
Sbjct: 66 PVPEKPNLIYLFMTYTSCEDNKFSEPVVMTLNK 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 8.9
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 23/44 (52%)
Query: 45 QQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGY--ESSPQLGI 86
Q ++ +L+ L++ Y +S+P L I
Sbjct: 20 QALK------KLQ-----------ASLKL----YADDSAPALAI 42
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 25.8 bits (57), Expect = 9.5
Identities = 9/56 (16%), Positives = 13/56 (23%)
Query: 24 QYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGGYE 79
Q + RG + + Y P C D G+E
Sbjct: 241 QTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWE 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.462
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,052,808
Number of extensions: 170593
Number of successful extensions: 527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 55
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)