RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4099
(190 letters)
>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 85.8 bits (211), Expect = 1e-22
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLER--YFCNPTCGDTDYLEVRD 75
G + SP +P+ YP ++ C + + P+ +I L F +F LE D LE+ D
Sbjct: 1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWD 60
Query: 76 GGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITW 123
G + P +G YC + PG I SS L + F++ D GF +
Sbjct: 61 GFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFYT-DSAIAKEGFSANY 107
Score = 35.7 bits (81), Expect = 6e-04
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 139 GSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCN 180
G I SPG+P Y C + ++ + S I L L+ +
Sbjct: 1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPD 42
>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 76.4 bits (187), Expect = 4e-19
Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 9/111 (8%)
Query: 18 GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDTDYLEVRDGG 77
G + SP YP YP + W + VP G I L FT +E +++ G
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYD----SVQIISGD 61
Query: 78 YESSPQLGIYCCKNHPG----EITSSGHQLYIKFFSDDDR-FKYPGFKITW 123
E G N E ++L + F SD ++ GF +
Sbjct: 62 TEEGRLCGQRSSNNPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYY 112
Score = 34.5 bits (78), Expect = 0.002
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 139 GSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCN 180
G I+SP YP Y W I V +G I L+ + ++ +
Sbjct: 6 GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELS 47
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 121
Score = 75.7 bits (185), Expect = 1e-18
Identities = 32/120 (26%), Positives = 42/120 (35%), Gaps = 10/120 (8%)
Query: 10 GGNFYSPE-GTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
G + P G L SP +P Y + WTLT P G ++RL FT F LE
Sbjct: 2 GPKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVK 61
Query: 69 DYLEVRDGGYESSPQLGIYCCKNH----PGEITSSGHQLYIKFFSDD-DRFKYPGFKITW 123
G + G S G L I F SD + + GF+ +
Sbjct: 62 LS----SGAKVLATLCGQESTDTERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFY 117
Score = 38.7 bits (89), Expect = 6e-05
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 131 GGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCN 180
G + SPG+P YA W + G + L+ L+ +
Sbjct: 3 PKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELS 52
>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 114
Score = 74.2 bits (181), Expect = 4e-18
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 9 CGGNFYS-PEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGD 67
C G ++ G L+SP+YP PYP C + + + G I L+F C
Sbjct: 1 CSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQC-P 59
Query: 68 TDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAS 127
D L+++ E P +C K P I + +++ I F + D+ + G+KI + S +
Sbjct: 60 YDSLKIQTDKREYGP----FCGKTLPPRIETDSNKVTITFTT-DESGNHTGWKIHYTSTA 114
Score = 41.8 bits (97), Expect = 4e-06
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 130 CGG-ILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLW 171
C G + TG SG + SP YP PY ++C + I + +G SITL
Sbjct: 1 CSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLD 43
>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos
taurus) [TaxId: 9913]}
Length = 111
Score = 58.0 bits (139), Expect = 5e-12
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 16/124 (12%)
Query: 6 STTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTC 65
+T CGG G + + Y P CVWT+ +P +R++ Q
Sbjct: 4 NTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQ--------LN 50
Query: 66 GDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDS 125
+ + LE+ DG + C+ + SSG + +K+ + + +++ +
Sbjct: 51 CNKESLEIIDGLPG--SPVLGKICEGSLMDYRSSGSIMTVKYIREPE-HPASFYEVLYFQ 107
Query: 126 ASTG 129
Sbjct: 108 DPQA 111
Score = 38.0 bits (87), Expect = 9e-05
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 127 STGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCN 180
+T CGGIL SG I + P T C W I + + + +QL+CN
Sbjct: 4 NTNCGGILKEESGVIATYYGPK-----TNCVWTIQMPPEYHVRVSIQYLQLNCN 52
>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 112
Score = 56.2 bits (134), Expect = 2e-11
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 16/126 (12%)
Query: 2 AVNLSTTCGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFC 61
+N CG G++++ LC WT+ + Q++R+ L
Sbjct: 2 RINGPDECGRVIKDTSGSISNTDR-----QKNLCTWTILMKPDQKVRMAIPYLNLACGKE 56
Query: 62 NPTCGDTDYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKI 121
D S C S+ + + IK+ F I
Sbjct: 57 YVEVFD----------GLLSGPSYGKLCAGAAIVFLSTANTMTIKYNRISGN-SSSPFLI 105
Query: 122 TWDSAS 127
+ +S
Sbjct: 106 YFYGSS 111
Score = 40.0 bits (92), Expect = 2e-05
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 125 SASTGCGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCN 180
+ CG ++ +SGSI + C W I + + + + L C
Sbjct: 4 NGPDECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLACG 54
>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 109
Score = 51.5 bits (122), Expect = 1e-09
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 17/121 (14%)
Query: 9 CGGNFYSPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCGDT 68
CGG GT+ + + P CVWTL V ++ ++ T L +
Sbjct: 6 CGGRLTDDYGTIFTYKG-----PKTECVWTLQVDPKYKLLVSIPTLNLTCGKEYVEVLE- 59
Query: 69 DYLEVRDGGYESSPQLGIYCCKNHPGEITSSGHQLYIKFFSDDDRFKYPGFKITWDSAST 128
+ + + + +K+ D ++I + S
Sbjct: 60 ----------GAPGSKSLGKFCEGLSILNRGSSGMTVKYKR-DSGHPASPYEIIFLRDSQ 108
Query: 129 G 129
G
Sbjct: 109 G 109
Score = 38.5 bits (88), Expect = 7e-05
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 130 CGGILTGSSGSIISPGYPYPYAYRTTCYWKIYVSQGSSITLWSLDVQLDCN 180
CGG LT G+I + P +T C W + V + + + L C
Sbjct: 6 CGGRLTDDYGTIFTYKGP-----KTECVWTLQVDPKYKLLVSIPTLNLTCG 51
>d2idba2 d.333.1.1 (A:326-491) 3-octaprenyl-4-hydroxybenzoate
carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
Length = 166
Score = 25.3 bits (55), Expect = 4.3
Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 7/70 (10%)
Query: 33 MLCVWTLTVPRGQQIRLN-------FTTFQLERYFCNPTCGDTDYLEVRDGGYESSPQLG 85
M + + R T R DYL+ ++G
Sbjct: 68 MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMG 127
Query: 86 IYCCKNHPGE 95
+ PGE
Sbjct: 128 LDATNKWPGE 137
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 109
Score = 24.4 bits (53), Expect = 4.8
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 28 PYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCG 66
P +T ++ + E Y P G
Sbjct: 14 PATGGN-STHNITSESDSRLAFKVKSSNNEHYRVRPVYG 51
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 124
Score = 24.1 bits (52), Expect = 7.7
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 15 SPEGTLTSPQYPDPYPPNMLCVWTLTVPRGQQIRLNFTTFQLERYFCNPTCG 66
P + + PY + ++I T ++R +P CG
Sbjct: 10 QPGTKIV---FNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCG 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.462
Gapped
Lambda K H
0.267 0.0402 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 793,097
Number of extensions: 37517
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 27
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)