Query psy410
Match_columns 93
No_of_seqs 174 out of 1254
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 16:58:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2217 ZntA Cation transport 99.8 2.4E-20 5.2E-25 145.1 8.6 85 2-87 376-462 (713)
2 TIGR01511 ATPase-IB1_Cu copper 99.8 2.2E-19 4.9E-24 136.9 8.4 84 2-86 248-334 (562)
3 TIGR01525 ATPase-IB_hvy heavy 99.8 9.8E-19 2.1E-23 133.1 8.8 85 1-86 216-305 (556)
4 PRK11033 zntA zinc/cadmium/mer 99.8 1.2E-18 2.6E-23 136.4 9.2 85 2-87 407-494 (741)
5 TIGR01647 ATPase-IIIA_H plasma 99.8 3.1E-18 6.8E-23 134.3 9.2 84 2-85 257-344 (755)
6 PRK01122 potassium-transportin 99.7 5.1E-18 1.1E-22 131.8 8.7 83 3-86 270-355 (679)
7 PRK10671 copA copper exporting 99.7 5.8E-18 1.3E-22 133.7 8.8 83 2-85 488-573 (834)
8 TIGR01497 kdpB K+-transporting 99.7 6.3E-18 1.4E-22 131.2 8.8 81 5-86 273-356 (675)
9 TIGR01512 ATPase-IB2_Cd heavy 99.7 4.7E-18 1E-22 129.0 7.9 82 2-87 217-298 (536)
10 KOG0207|consensus 99.7 1.1E-18 2.5E-23 136.8 4.0 87 2-88 553-642 (951)
11 PRK14010 potassium-transportin 99.7 1.3E-17 2.7E-22 129.5 8.9 84 2-86 269-355 (673)
12 TIGR01494 ATPase_P-type ATPase 99.7 2.8E-17 6E-22 123.6 7.7 73 2-85 201-273 (499)
13 PRK15122 magnesium-transportin 99.7 3.6E-17 7.7E-22 130.3 8.5 85 2-86 340-429 (903)
14 TIGR01524 ATPase-IIIB_Mg magne 99.7 4E-17 8.6E-22 129.6 8.1 85 1-85 306-395 (867)
15 PRK10517 magnesium-transportin 99.7 1.8E-16 4E-21 126.3 8.6 84 2-85 342-430 (902)
16 TIGR01657 P-ATPase-V P-type AT 99.6 1.8E-16 3.9E-21 127.9 5.9 56 1-56 418-473 (1054)
17 TIGR01522 ATPase-IIA2_Ca golgi 99.6 5.2E-16 1.1E-20 123.4 8.3 54 2-55 295-348 (884)
18 TIGR01517 ATPase-IIB_Ca plasma 99.6 8.9E-16 1.9E-20 122.7 8.0 54 1-54 346-399 (941)
19 TIGR01523 ATPase-IID_K-Na pota 99.6 2.9E-15 6.2E-20 121.0 5.3 54 1-54 329-382 (1053)
20 COG0474 MgtA Cation transport 99.6 2.6E-15 5.7E-20 119.9 4.8 55 1-55 318-372 (917)
21 TIGR01116 ATPase-IIA1_Ca sarco 99.6 4E-15 8.7E-20 118.8 5.6 55 1-55 259-313 (917)
22 TIGR01106 ATPase-IIC_X-K sodiu 99.5 9.8E-15 2.1E-19 117.4 5.4 53 2-54 315-367 (997)
23 KOG0208|consensus 99.5 1.5E-14 3.2E-19 114.7 6.2 56 1-56 438-493 (1140)
24 KOG0202|consensus 99.4 6.7E-14 1.5E-18 109.8 4.5 55 1-55 302-356 (972)
25 KOG0204|consensus 99.3 6.6E-13 1.4E-17 104.5 3.2 56 1-56 405-460 (1034)
26 KOG0205|consensus 99.3 2.4E-12 5.2E-17 99.6 4.1 86 1-86 297-388 (942)
27 KOG0209|consensus 99.2 2.7E-11 5.8E-16 95.6 5.9 55 1-55 449-503 (1160)
28 KOG0203|consensus 99.0 2.5E-10 5.3E-15 90.2 4.1 55 1-55 336-390 (1019)
29 TIGR01652 ATPase-Plipid phosph 99.0 2.6E-10 5.6E-15 92.5 4.4 45 10-54 334-382 (1057)
30 COG2216 KdpB High-affinity K+ 98.9 8.6E-10 1.9E-14 83.8 3.6 80 7-87 275-357 (681)
31 PF00702 Hydrolase: haloacid d 98.7 1.1E-08 2.4E-13 68.0 3.9 52 31-86 1-52 (215)
32 PLN03190 aminophospholipid tra 98.6 4.2E-08 9E-13 80.7 4.6 38 17-54 439-476 (1178)
33 KOG0210|consensus 97.9 9.6E-06 2.1E-10 64.1 3.1 41 15-55 391-431 (1051)
34 KOG0206|consensus 97.3 0.00015 3.2E-09 60.0 2.4 41 14-54 370-410 (1151)
35 PF12710 HAD: haloacid dehalog 89.0 0.23 5E-06 32.2 1.4 13 34-46 1-13 (192)
36 COG1778 Low specificity phosph 70.2 2.9 6.2E-05 28.0 1.4 26 25-50 2-27 (170)
37 TIGR02726 phenyl_P_delta pheny 66.1 4.3 9.3E-05 26.8 1.7 25 26-50 2-26 (169)
38 PF10555 MraY_sig1: Phospho-N- 62.0 6.1 0.00013 15.4 1.1 11 38-48 1-11 (13)
39 PRK13222 phosphoglycolate phos 61.2 6 0.00013 26.2 1.7 19 28-46 3-21 (226)
40 KOG0285|consensus 59.3 5.5 0.00012 30.1 1.3 21 21-41 402-422 (460)
41 PLN02954 phosphoserine phospha 46.2 15 0.00033 24.4 1.8 26 22-47 3-28 (224)
42 cd08399 C2_PI3K_class_I_gamma 40.5 21 0.00045 24.0 1.7 27 26-52 110-136 (178)
43 PRK14681 hypothetical protein; 39.9 36 0.00078 22.5 2.7 44 6-54 51-94 (158)
44 TIGR02888 spore_YlmC_YmxH spor 36.2 19 0.0004 20.9 0.8 21 23-43 14-37 (76)
45 PF09419 PGP_phosphatase: Mito 35.3 28 0.00061 23.1 1.7 18 28-45 38-55 (168)
46 cd08398 C2_PI3K_class_I_alpha 33.4 31 0.00067 22.6 1.6 27 26-52 94-120 (158)
47 TIGR01662 HAD-SF-IIIA HAD-supe 33.3 29 0.00063 21.1 1.4 14 32-45 1-14 (132)
48 PRK14677 hypothetical protein; 33.2 52 0.0011 20.2 2.5 43 6-54 8-50 (107)
49 cd04012 C2A_PI3K_class_II C2 d 31.8 32 0.0007 22.5 1.5 25 26-50 107-131 (171)
50 PF05902 4_1_CTD: 4.1 protein 30.0 41 0.00088 21.2 1.7 21 73-93 84-104 (114)
51 COG0546 Gph Predicted phosphat 27.7 46 0.00099 22.4 1.8 20 30-49 3-22 (220)
52 PRK09484 3-deoxy-D-manno-octul 27.2 76 0.0016 20.8 2.7 20 26-45 16-35 (183)
53 cd08380 C2_PI3K_like C2 domain 26.4 38 0.00083 21.6 1.1 25 26-50 95-119 (156)
54 COG1494 GlpX Fructose-1,6-bisp 26.1 48 0.001 24.4 1.7 45 9-55 252-296 (332)
55 PRK11251 DNA-binding transcrip 26.1 34 0.00074 21.2 0.8 17 31-47 79-95 (109)
56 PRK14673 hypothetical protein; 25.6 45 0.00097 21.5 1.3 44 6-54 34-77 (137)
57 cd08397 C2_PI3K_class_III C2 d 25.2 48 0.001 21.7 1.4 26 26-51 95-120 (159)
58 PF11359 gpUL132: Glycoprotein 24.5 45 0.00097 23.4 1.2 11 32-42 155-165 (235)
59 PRK14678 hypothetical protein; 23.6 1.1E+02 0.0024 19.1 2.9 43 6-54 14-56 (120)
60 COG5468 Predicted secreted (pe 23.4 87 0.0019 20.9 2.4 33 29-61 107-141 (172)
61 PRK13478 phosphonoacetaldehyde 22.9 58 0.0013 22.4 1.6 18 29-46 2-19 (267)
62 PRK14683 hypothetical protein; 22.1 1.2E+02 0.0027 19.0 2.8 43 6-54 21-63 (122)
63 COG0792 Predicted endonuclease 21.9 1E+02 0.0023 19.2 2.4 43 6-54 10-52 (114)
64 KOG0983|consensus 21.2 1.1E+02 0.0025 22.8 2.8 46 1-46 196-246 (391)
65 KOG3085|consensus 20.9 60 0.0013 22.9 1.3 17 28-44 4-20 (237)
66 PF05239 PRC: PRC-barrel domai 20.8 41 0.00088 18.6 0.4 30 11-43 8-38 (79)
67 TIGR01670 YrbI-phosphatas 3-de 20.7 70 0.0015 20.3 1.5 17 31-47 1-17 (154)
No 1
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.4e-20 Score=145.12 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC--hhhHHHHHHhhcCCCChHHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH--DCKFLAPVKRPSSLPPTEPLLAA 79 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~--~~~~~~~~~~~s~~p~~~~l~~a 79 (93)
++++..|+++++|+|||+|++.++|.++++++++||||||||+|+|.|.++...+ +++.+ .+....|..++||+++|
T Consensus 376 P~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~~e~~~L-~laAalE~~S~HPiA~A 454 (713)
T COG2217 376 PTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDGDEDELL-ALAAALEQHSEHPLAKA 454 (713)
T ss_pred HHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCCCHHHHH-HHHHHHHhcCCChHHHH
Confidence 5788999999999999999999999999999999999999999999999999874 23332 22233333444558899
Q ss_pred HHHhhhhh
Q psy410 80 MEKRCKVH 87 (93)
Q Consensus 80 i~~~~~~~ 87 (93)
|+.+++..
T Consensus 455 Iv~~a~~~ 462 (713)
T COG2217 455 IVKAAAER 462 (713)
T ss_pred HHHHHHhc
Confidence 98876654
No 2
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.80 E-value=2.2e-19 Score=136.87 Aligned_cols=84 Identities=24% Similarity=0.219 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ 78 (93)
++++..++++++|+||++|++.++|.+++++++|||||||||+|+|+|.++.+.+ +++++... ...+..+.||+++
T Consensus 248 p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~l~~a-a~~e~~s~HPia~ 326 (562)
T TIGR01511 248 PTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVTDVHVFGDRDRTELLALA-AALEAGSEHPLAK 326 (562)
T ss_pred HHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEEEEEEecCCCCCHHHHHHHH-HHHhccCCChHHH
Confidence 5788999999999999999999999999999999999999999999999987653 23333322 2223334566888
Q ss_pred HHHHhhhh
Q psy410 79 AMEKRCKV 86 (93)
Q Consensus 79 ai~~~~~~ 86 (93)
|+..+++.
T Consensus 327 Ai~~~~~~ 334 (562)
T TIGR01511 327 AIVSYAKE 334 (562)
T ss_pred HHHHHHHh
Confidence 88887754
No 3
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.78 E-value=9.8e-19 Score=133.05 Aligned_cols=85 Identities=25% Similarity=0.308 Sum_probs=68.7
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh-----hhHHHHHHhhcCCCChHH
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD-----CKFLAPVKRPSSLPPTEP 75 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----~~~~~~~~~~s~~p~~~~ 75 (93)
+++++..++++++++|+++|+++++|.+++++++|||||||||+|+|+|.++...++ ++.+. +....+..+.||
T Consensus 216 ~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~-~a~~~e~~~~hp 294 (556)
T TIGR01525 216 TPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLA-LAAALEQSSSHP 294 (556)
T ss_pred hHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHH-HHHHHhccCCCh
Confidence 367889999999999999999999999999999999999999999999999876532 23332 223334456678
Q ss_pred HHHHHHHhhhh
Q psy410 76 LLAAMEKRCKV 86 (93)
Q Consensus 76 l~~ai~~~~~~ 86 (93)
++.||..+++.
T Consensus 295 ~~~Ai~~~~~~ 305 (556)
T TIGR01525 295 LARAIVRYAKK 305 (556)
T ss_pred HHHHHHHHHHh
Confidence 88999888764
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.77 E-value=1.2e-18 Score=136.42 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=69.1
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ 78 (93)
++++..++.+++|+||++|++.++|.+++++++|||||||||+|+|+|.+++..+ +++++. +....+..+.||+++
T Consensus 407 P~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~-~aa~~e~~s~hPia~ 485 (741)
T PRK11033 407 PAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESELLA-LAAAVEQGSTHPLAQ 485 (741)
T ss_pred HHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHHHHH-HHHHHhcCCCCHHHH
Confidence 4677889999999999999999999999999999999999999999999998653 233333 233344556788999
Q ss_pred HHHHhhhhh
Q psy410 79 AMEKRCKVH 87 (93)
Q Consensus 79 ai~~~~~~~ 87 (93)
||..+++.+
T Consensus 486 Ai~~~a~~~ 494 (741)
T PRK11033 486 AIVREAQVR 494 (741)
T ss_pred HHHHHHHhc
Confidence 998887643
No 5
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.76 E-value=3.1e-18 Score=134.25 Aligned_cols=84 Identities=21% Similarity=0.238 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC----hhhHHHHHHhhcCCCChHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH----DCKFLAPVKRPSSLPPTEPLL 77 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~----~~~~~~~~~~~s~~p~~~~l~ 77 (93)
+++++.|+++++|+|+++|+++++|.+|.++++|||||||||+|+|+|.+++..+ .++.+......++..+.||+.
T Consensus 257 ~~~la~g~~r~ak~gilvk~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~ 336 (755)
T TIGR01647 257 SVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAID 336 (755)
T ss_pred HHHHHHHHHHHHhCCeEEcccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHH
Confidence 6788899999999999999999999999999999999999999999999987653 223332222233455678888
Q ss_pred HHHHHhhh
Q psy410 78 AAMEKRCK 85 (93)
Q Consensus 78 ~ai~~~~~ 85 (93)
.|+..+++
T Consensus 337 ~Ai~~~~~ 344 (755)
T TIGR01647 337 TAVLGSAK 344 (755)
T ss_pred HHHHHHHH
Confidence 88887654
No 6
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.75 E-value=5.1e-18 Score=131.77 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHHH
Q psy410 3 VGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLAA 79 (93)
Q Consensus 3 ia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~a 79 (93)
+....|+++++|+|+++|+++++|.+|+++++|||||||||+|++++.++++.. ++.++. ....++..+.||+++|
T Consensus 270 ~i~i~g~~r~ak~gvLvk~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~-~a~~~s~~s~hP~~~A 348 (679)
T PRK01122 270 AIGIAGMDRVLQANVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELAD-AAQLSSLADETPEGRS 348 (679)
T ss_pred HHHHHHHHHHhcCCeeecCchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHH-HHHHhcCCCCCchHHH
Confidence 345679999999999999999999999999999999999999999999987653 222322 2222333344567778
Q ss_pred HHHhhhh
Q psy410 80 MEKRCKV 86 (93)
Q Consensus 80 i~~~~~~ 86 (93)
|..+++.
T Consensus 349 Iv~~a~~ 355 (679)
T PRK01122 349 IVVLAKQ 355 (679)
T ss_pred HHHHHHh
Confidence 8776654
No 7
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.74 E-value=5.8e-18 Score=133.71 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ 78 (93)
++++..++++++|+||++|+++++|.+++++++|||||||||+|+|+|.++.... +.+.+.. ....+..+.||+++
T Consensus 488 p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~-a~~~e~~s~hp~a~ 566 (834)
T PRK10671 488 PMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLTEGKPQVVAVKTFNGVDEAQALRL-AAALEQGSSHPLAR 566 (834)
T ss_pred HHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcCCCccccCceEEEEEEccCCCCHHHHHHH-HHHHhCCCCCHHHH
Confidence 5788899999999999999999999999999999999999999999999887653 2333222 22223344566888
Q ss_pred HHHHhhh
Q psy410 79 AMEKRCK 85 (93)
Q Consensus 79 ai~~~~~ 85 (93)
||..+++
T Consensus 567 Ai~~~~~ 573 (834)
T PRK10671 567 AILDKAG 573 (834)
T ss_pred HHHHHHh
Confidence 8877654
No 8
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.74 E-value=6.3e-18 Score=131.19 Aligned_cols=81 Identities=21% Similarity=0.255 Sum_probs=62.5
Q ss_pred HHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCCCChHHHHHHHH
Q psy410 5 RIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSLPPTEPLLAAME 81 (93)
Q Consensus 5 ~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~p~~~~l~~ai~ 81 (93)
...|++|++|+|+++|++.++|.+|+++++|||||||||+|+|++.++++.. .++++.. ....+..++||+++|+.
T Consensus 273 ~iag~~r~ar~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~-aa~~~~~s~hP~a~Aiv 351 (675)
T TIGR01497 273 GIAGMDRVLGFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADA-AQLASLADDTPEGKSIV 351 (675)
T ss_pred HHHHHHHHHHCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHH-HHHhcCCCCCcHHHHHH
Confidence 3568999999999999999999999999999999999999999999988653 2233322 22233344566777887
Q ss_pred Hhhhh
Q psy410 82 KRCKV 86 (93)
Q Consensus 82 ~~~~~ 86 (93)
.+++.
T Consensus 352 ~~a~~ 356 (675)
T TIGR01497 352 ILAKQ 356 (675)
T ss_pred HHHHH
Confidence 76653
No 9
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.74 E-value=4.7e-18 Score=129.01 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=65.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCChhhHHHHHHhhcCCCChHHHHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCKFLAPVKRPSSLPPTEPLLAAME 81 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~s~~p~~~~l~~ai~ 81 (93)
++++..++++++|+||++|+++++|.+++++++|||||||||+|+|+|.++.+. +.+... ...+..+.||+++||.
T Consensus 217 ~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~---~~l~~a-~~~e~~~~hp~~~Ai~ 292 (536)
T TIGR01512 217 PAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVPA---EVLRLA-AAAEQASSHPLARAIV 292 (536)
T ss_pred HHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeHH---HHHHHH-HHHhccCCCcHHHHHH
Confidence 678889999999999999999999999999999999999999999999998653 222221 2233344566888888
Q ss_pred Hhhhhh
Q psy410 82 KRCKVH 87 (93)
Q Consensus 82 ~~~~~~ 87 (93)
.+++..
T Consensus 293 ~~~~~~ 298 (536)
T TIGR01512 293 DYARKR 298 (536)
T ss_pred HHHHhc
Confidence 776543
No 10
>KOG0207|consensus
Probab=99.74 E-value=1.1e-18 Score=136.82 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=71.4
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh---hhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD---CKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~---~~~~~~~~~~s~~p~~~~l~~ 78 (93)
++|++.|.+..+++|+|+|+++.+|.+.++++++||||||||+|++.|.++....+ ......+....|..+.||+++
T Consensus 553 PtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~SeHPig~ 632 (951)
T KOG0207|consen 553 PTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMESGSEHPIGK 632 (951)
T ss_pred ceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhcCCcCchHH
Confidence 35667788999999999999999999999999999999999999999999988754 222233445555566677999
Q ss_pred HHHHhhhhhc
Q psy410 79 AMEKRCKVHK 88 (93)
Q Consensus 79 ai~~~~~~~~ 88 (93)
||+.|++...
T Consensus 633 AIv~yak~~~ 642 (951)
T KOG0207|consen 633 AIVDYAKEKL 642 (951)
T ss_pred HHHHHHHhcc
Confidence 9999998765
No 11
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.73 E-value=1.3e-17 Score=129.52 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=65.5
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh---hhHHHHHHhhcCCCChHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD---CKFLAPVKRPSSLPPTEPLLA 78 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~---~~~~~~~~~~s~~p~~~~l~~ 78 (93)
+++...|++|++|+|+++|++.++|.+|+++++|||||||||+|++.+.++.+..+ ++++. ....++..+.||+++
T Consensus 269 ~~~~~~g~~r~ak~gvLvk~~~avE~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~-~a~~~~~~s~~P~~~ 347 (673)
T PRK14010 269 SAIGIAGMDRVTQFNILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVK-AAYESSIADDTPEGR 347 (673)
T ss_pred HHHHHHHHHHHhhCCEEEeCcHHHHHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHH-HHHHhcCCCCChHHH
Confidence 45667899999999999999999999999999999999999999998888766532 22222 222333445678888
Q ss_pred HHHHhhhh
Q psy410 79 AMEKRCKV 86 (93)
Q Consensus 79 ai~~~~~~ 86 (93)
||..+++.
T Consensus 348 AIv~~a~~ 355 (673)
T PRK14010 348 SIVKLAYK 355 (673)
T ss_pred HHHHHHHH
Confidence 88877653
No 12
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.71 E-value=2.8e-17 Score=123.56 Aligned_cols=73 Identities=27% Similarity=0.364 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCChhhHHHHHHhhcCCCChHHHHHHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCKFLAPVKRPSSLPPTEPLLAAME 81 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~s~~p~~~~l~~ai~ 81 (93)
++++..+..+++++|+++|+++.+|.+++++++|||||||||+|+|++.++...+. +..+.||+..|+.
T Consensus 201 ~~~~~~~~~~~~~~gilvk~~~~lE~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----------~~~s~hp~~~ai~ 269 (499)
T TIGR01494 201 TIALAVGDARLAKKGIVVRSLNALEELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-----------EYLSGHPDERALV 269 (499)
T ss_pred HHHHHHHHHHHHHCCcEEechhhhhhccCCcEEEeeCCCccccCceEEEEEEecCC-----------CcCCCChHHHHHH
Confidence 56888999999999999999999999999999999999999999999999876432 1233456777777
Q ss_pred Hhhh
Q psy410 82 KRCK 85 (93)
Q Consensus 82 ~~~~ 85 (93)
.+++
T Consensus 270 ~~~~ 273 (499)
T TIGR01494 270 KSAK 273 (499)
T ss_pred HHhh
Confidence 7664
No 13
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.71 E-value=3.6e-17 Score=130.31 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHHHHhhcCC--CChHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAPVKRPSSL--PPTEPL 76 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~~~~~s~~--p~~~~l 76 (93)
+++++.|+++|+|+|+++|++.++|.+|+++++|||||||||+|+|.|.+++..+ +++.+......+.| .+.||+
T Consensus 340 t~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~~~~~~~~p~ 419 (903)
T PRK15122 340 SSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSFHQSGMKNLM 419 (903)
T ss_pred HHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCCCCCCCCChH
Confidence 5788899999999999999999999999999999999999999999999987543 22232211111222 346889
Q ss_pred HHHHHHhhhh
Q psy410 77 LAAMEKRCKV 86 (93)
Q Consensus 77 ~~ai~~~~~~ 86 (93)
..|+..++..
T Consensus 420 e~All~~a~~ 429 (903)
T PRK15122 420 DQAVVAFAEG 429 (903)
T ss_pred HHHHHHHHHH
Confidence 9999877653
No 14
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.70 E-value=4e-17 Score=129.60 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=65.3
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHH--HHHhhcCCCChHH
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLA--PVKRPSSLPPTEP 75 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~--~~~~~s~~p~~~~ 75 (93)
++++++.|.++|+|+|+++|++.++|.+|+++++|||||||||+|+|+|.+++... .++++. .+.+..+..+.||
T Consensus 306 vt~~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p 385 (867)
T TIGR01524 306 VSSNLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNV 385 (867)
T ss_pred HHHHHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCCh
Confidence 36788999999999999999999999999999999999999999999999986543 222222 1212222334577
Q ss_pred HHHHHHHhhh
Q psy410 76 LLAAMEKRCK 85 (93)
Q Consensus 76 l~~ai~~~~~ 85 (93)
+..|+..++.
T Consensus 386 ~~~Al~~~~~ 395 (867)
T TIGR01524 386 LDHAVLAKLD 395 (867)
T ss_pred HHHHHHHHHH
Confidence 8888876654
No 15
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.67 E-value=1.8e-16 Score=126.27 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=64.1
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC---hhhHHHH--HHhhcCCCChHHH
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH---DCKFLAP--VKRPSSLPPTEPL 76 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~---~~~~~~~--~~~~s~~p~~~~l 76 (93)
+++++.|+++|+|+|+++|+++++|.+|+++++|||||||||+|+|.|.++.... +++.+.. +....+....||+
T Consensus 342 t~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~ 421 (902)
T PRK10517 342 TSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLL 421 (902)
T ss_pred HHHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHH
Confidence 6788899999999999999999999999999999999999999999999875432 2222221 1111123346778
Q ss_pred HHHHHHhhh
Q psy410 77 LAAMEKRCK 85 (93)
Q Consensus 77 ~~ai~~~~~ 85 (93)
..|+..+.+
T Consensus 422 d~All~~a~ 430 (902)
T PRK10517 422 DTAVLEGVD 430 (902)
T ss_pred HHHHHHHHH
Confidence 888877654
No 16
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.65 E-value=1.8e-16 Score=127.85 Aligned_cols=56 Identities=50% Similarity=0.885 Sum_probs=52.6
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH 56 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~ 56 (93)
+++++++|+.||+|+|++||++.++|.+|+++++|||||||||+++|+|.+++..+
T Consensus 418 ~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~ 473 (1054)
T TIGR01657 418 LSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLS 473 (1054)
T ss_pred HHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEeccc
Confidence 46889999999999999999999999999999999999999999999999987653
No 17
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.65 E-value=5.2e-16 Score=123.45 Aligned_cols=54 Identities=28% Similarity=0.384 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
++++++|+++|+|+|+++|++.++|.+|+++++|||||||||+|+|+|.+++..
T Consensus 295 t~~l~~~~~r~ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~ 348 (884)
T TIGR01522 295 TVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTS 348 (884)
T ss_pred HHHHHHHHHHHhhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEEEec
Confidence 678999999999999999999999999999999999999999999999988653
No 18
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.63 E-value=8.9e-16 Score=122.74 Aligned_cols=54 Identities=26% Similarity=0.364 Sum_probs=51.0
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+++++++++++|+|+|+++|+++++|.+|+++++|||||||||+|+|.+.+++.
T Consensus 346 vti~l~~~~~~mak~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~ 399 (941)
T TIGR01517 346 VTIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYI 399 (941)
T ss_pred HHHHHHHHHHHHHhCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEE
Confidence 367899999999999999999999999999999999999999999999998865
No 19
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.56 E-value=2.9e-15 Score=120.99 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=51.2
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+|++++.|.+||+++|+++|++.++|++|.+++||+|||||||+++|+|.+++.
T Consensus 329 vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i~~ 382 (1053)
T TIGR01523 329 LSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWI 382 (1053)
T ss_pred HHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEEEE
Confidence 478999999999999999999999999999999999999999999999998753
No 20
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.56 E-value=2.6e-15 Score=119.88 Aligned_cols=55 Identities=29% Similarity=0.444 Sum_probs=53.0
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+|++++.+..+|+++++++|++.++|.+|++++||+||||||||++|+|.+++..
T Consensus 318 vti~la~g~~~mak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~ 372 (917)
T COG0474 318 VTIALALGAQRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYIN 372 (917)
T ss_pred HHHHHHHHHHHHHhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeC
Confidence 4789999999999999999999999999999999999999999999999999887
No 21
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.56 E-value=4e-15 Score=118.78 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=51.4
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+++++++++++|+++|+++|+++++|.+|+++++|||||||||+|+|++.+++..
T Consensus 259 vti~l~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~ 313 (917)
T TIGR01116 259 ITTCLALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVAL 313 (917)
T ss_pred HHHHHHHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEec
Confidence 3678899999999999999999999999999999999999999999999998653
No 22
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.53 E-value=9.8e-15 Score=117.39 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 2 TVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 2 tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+++++++.++|+++|+++|++.++|.+|+++++|||||||||+|+|+|.+++.
T Consensus 315 ~i~l~~~~~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~ 367 (997)
T TIGR01106 315 TVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWF 367 (997)
T ss_pred HHHHHHHHHHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEE
Confidence 56888999999999999999999999999999999999999999999998763
No 23
>KOG0208|consensus
Probab=99.53 E-value=1.5e-14 Score=114.74 Aligned_cols=56 Identities=73% Similarity=1.290 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH 56 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~ 56 (93)
+|+++.++.+|+.|+||+|.+|.++..+|+++++|||||||||+.++++..+.+.+
T Consensus 438 ltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~ 493 (1140)
T KOG0208|consen 438 LTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVE 493 (1140)
T ss_pred hhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEecc
Confidence 57899999999999999999999999999999999999999999999999998863
No 24
>KOG0202|consensus
Probab=99.45 E-value=6.7e-14 Score=109.83 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=52.5
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+|++++.|.+||+|++.++|...++|++|.+++||.|||||||+|+|.+.+++..
T Consensus 302 vT~tLALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~ 356 (972)
T KOG0202|consen 302 VTTTLALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIP 356 (972)
T ss_pred hhhhHHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEec
Confidence 5789999999999999999999999999999999999999999999999998765
No 25
>KOG0204|consensus
Probab=99.33 E-value=6.6e-13 Score=104.50 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=52.7
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVH 56 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~ 56 (93)
+|+++++++++|.+.+.|+|+.+++|++|+.++||.|||||||+++|.|++.+..+
T Consensus 405 VTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~~ 460 (1034)
T KOG0204|consen 405 VTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIGS 460 (1034)
T ss_pred HHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeecc
Confidence 47899999999999999999999999999999999999999999999999987653
No 26
>KOG0205|consensus
Probab=99.29 E-value=2.4e-12 Score=99.55 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=68.8
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEE--E--EeC--ChhhHHHHHHhhcCCCChH
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWG--V--VPV--HDCKFLAPVKRPSSLPPTE 74 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~--~--~~~--~~~~~~~~~~~~s~~p~~~ 74 (93)
+|+.++.|.-|++++|.++|...++|.++.++++|.|||||||.++++|.+ + +.. +.+......+.+|.....+
T Consensus 297 lsvTMAiGs~rLaqqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~D 376 (942)
T KOG0205|consen 297 LSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQD 376 (942)
T ss_pred eeehhhHHHHHHHhcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChh
Confidence 467899999999999999999999999999999999999999999999988 3 221 2334433334555666668
Q ss_pred HHHHHHHHhhhh
Q psy410 75 PLLAAMEKRCKV 86 (93)
Q Consensus 75 ~l~~ai~~~~~~ 86 (93)
+|..||+...+.
T Consensus 377 AID~A~v~~L~d 388 (942)
T KOG0205|consen 377 AIDAAIVGMLAD 388 (942)
T ss_pred hHHHHHHHhhcC
Confidence 888888877654
No 27
>KOG0209|consensus
Probab=99.20 E-value=2.7e-11 Score=95.60 Aligned_cols=55 Identities=38% Similarity=0.639 Sum_probs=51.1
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+|+|.-.++..++|.|++|..|-+|.-+|++|..|||||||||+..|.|.++-..
T Consensus 449 LSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~ 503 (1160)
T KOG0209|consen 449 LSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGL 503 (1160)
T ss_pred hhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccc
Confidence 4677788899999999999999999999999999999999999999999998764
No 28
>KOG0203|consensus
Probab=99.02 E-value=2.5e-10 Score=90.23 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=51.6
Q ss_pred CchhHHHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 1 MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 1 ~tia~~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
+|.++..-.+||+++++++|+.+++|++|...++|.|||||||+++|.|.+++..
T Consensus 336 vTv~LtltakrMa~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d 390 (1019)
T KOG0203|consen 336 VTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFD 390 (1019)
T ss_pred ehhhHHHHHHHHhhceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccC
Confidence 4677888999999999999999999999999999999999999999999998765
No 29
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.02 E-value=2.6e-10 Score=92.54 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=40.5
Q ss_pred HHHHHC----CeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 10 SRLQKN----NIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 10 ~~~~~~----gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
.+|.++ ++++|+.+..|.+|.++.||+|||||||+++|.+.++..
T Consensus 334 ~~m~~~~~~~~~~vr~~~~~E~LG~v~~I~sDKTGTLT~N~M~~~~~~i 382 (1057)
T TIGR01652 334 LQMYHEKTDTPASVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSI 382 (1057)
T ss_pred hhhhccccCCcceeecCCChHHhcCeeEEEEcCCCceeeeeEEEEEEEE
Confidence 557653 599999999999999999999999999999999999864
No 30
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=98.92 E-value=8.6e-10 Score=83.83 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=61.8
Q ss_pred HHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeCCh---hhHHHHHHhhcCCCChHHHHHHHHHh
Q psy410 7 YAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHD---CKFLAPVKRPSSLPPTEPLLAAMEKR 83 (93)
Q Consensus 7 ~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~~~---~~~~~~~~~~s~~p~~~~l~~ai~~~ 83 (93)
.|+.|+.+.|++-+++.++|.+|.+|+++.|||||+|.|+-.-.++++... +++.. .+..+....+.|-.++|+..
T Consensus 275 AGMdRv~~~NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~-aa~lsSl~DeTpEGrSIV~L 353 (681)
T COG2216 275 AGMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELAD-AAQLASLADETPEGRSIVEL 353 (681)
T ss_pred hhhhHhhhhceeecCcchhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHH-HHHHhhhccCCCCcccHHHH
Confidence 578999999999999999999999999999999999999999999998752 33332 23333344445566677776
Q ss_pred hhhh
Q psy410 84 CKVH 87 (93)
Q Consensus 84 ~~~~ 87 (93)
+++.
T Consensus 354 A~~~ 357 (681)
T COG2216 354 AKKL 357 (681)
T ss_pred HHHh
Confidence 6543
No 31
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.74 E-value=1.1e-08 Score=67.99 Aligned_cols=52 Identities=31% Similarity=0.441 Sum_probs=31.8
Q ss_pred ccEEEecCCCcCCCCCeEEEEEEeCChhhHHHHHHhhcCCCChHHHHHHHHHhhhh
Q psy410 31 INCVCFDKTGTLTEDGLDMWGVVPVHDCKFLAPVKRPSSLPPTEPLLAAMEKRCKV 86 (93)
Q Consensus 31 v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~s~~p~~~~l~~ai~~~~~~ 86 (93)
|++||||||||||++++.+ .+.....+...+.. .+..+.||+..++..+...
T Consensus 1 i~~i~fDktGTLt~~~~~v---~~~~~~~~~~~~~~-~~~~s~~p~~~~~~~~~~~ 52 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---APPSNEAALAIAAA-LEQGSEHPIGKAIVEFAKN 52 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---ESCSHHHHHHHHHH-HHCTSTSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCcccCeEEE---EeccHHHHHHHHHH-hhhcCCCcchhhhhhhhhh
Confidence 5899999999999999999 11333333332222 2223345566666665544
No 32
>PLN03190 aminophospholipid translocase; Provisional
Probab=98.62 E-value=4.2e-08 Score=80.74 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=35.6
Q ss_pred eEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 17 IYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 17 il~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
+.+|+.+..|.||.|+.||.|||||||+++|.+.++..
T Consensus 439 ~~vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i 476 (1178)
T PLN03190 439 FQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASI 476 (1178)
T ss_pred ceeccCcchhhhccceEEEEcCCCccccceEEEEEEEE
Confidence 67999999999999999999999999999999998754
No 33
>KOG0210|consensus
Probab=97.89 E-value=9.6e-06 Score=64.12 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=37.8
Q ss_pred CCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 15 NNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 15 ~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
.|.++|+...=|.+|++..+..|||||||+++|...+++..
T Consensus 391 pgtvvRSstIPEeLGRIsylLtDKTGTLTqNEM~~KKiHLG 431 (1051)
T KOG0210|consen 391 PGTVVRSSTIPEELGRISYLLTDKTGTLTQNEMEFKKIHLG 431 (1051)
T ss_pred CceeeecCCChHHhcceEEEEecCcCccccchheeeeeeee
Confidence 37899999999999999999999999999999999998764
No 34
>KOG0206|consensus
Probab=97.30 E-value=0.00015 Score=59.97 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=36.1
Q ss_pred HCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 14 KNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 14 ~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
.....+|..+--|.+|+++.|..|||||||++.|...+...
T Consensus 370 d~~~~~rtsnl~eeLGqv~yIfSDKTGTLT~N~M~F~kCsi 410 (1151)
T KOG0206|consen 370 DTPAQARTSNLNEELGQVEYIFSDKTGTLTQNSMEFKKCSI 410 (1151)
T ss_pred CCccccccCCchhhhcceeEEEEcCcCccccceeeeecccc
Confidence 34677888889999999999999999999999999887654
No 35
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=88.98 E-value=0.23 Score=32.18 Aligned_cols=13 Identities=54% Similarity=0.759 Sum_probs=12.2
Q ss_pred EEecCCCcCCCCC
Q psy410 34 VCFDKTGTLTEDG 46 (93)
Q Consensus 34 i~fDKTGTLT~~~ 46 (93)
+|||..||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999998
No 36
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=70.23 E-value=2.9 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.6
Q ss_pred hhhcCCccEEEecCCCcCCCCCeEEE
Q psy410 25 INVSGSINCVCFDKTGTLTEDGLDMW 50 (93)
Q Consensus 25 ~e~~~~v~~i~fDKTGTLT~~~~~v~ 50 (93)
.+++.+++.++||-=|+||.|++-..
T Consensus 2 ~~ra~~IkLli~DVDGvLTDG~ly~~ 27 (170)
T COG1778 2 IARAKNIKLLILDVDGVLTDGKLYYD 27 (170)
T ss_pred hhhhhhceEEEEeccceeecCeEEEc
Confidence 46778899999999999999998654
No 37
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=66.12 E-value=4.3 Score=26.83 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.4
Q ss_pred hhcCCccEEEecCCCcCCCCCeEEE
Q psy410 26 NVSGSINCVCFDKTGTLTEDGLDMW 50 (93)
Q Consensus 26 e~~~~v~~i~fDKTGTLT~~~~~v~ 50 (93)
|.+..++.++||==|+||.|.+.+.
T Consensus 2 ~~~~~i~~~v~d~dGv~tdg~~~~~ 26 (169)
T TIGR02726 2 EQAKNIKLVILDVDGVMTDGRIVIN 26 (169)
T ss_pred CccccCeEEEEeCceeeECCeEEEc
Confidence 5567799999999999999987664
No 38
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=62.01 E-value=6.1 Score=15.37 Aligned_cols=11 Identities=45% Similarity=0.564 Sum_probs=8.4
Q ss_pred CCCcCCCCCeE
Q psy410 38 KTGTLTEDGLD 48 (93)
Q Consensus 38 KTGTLT~~~~~ 48 (93)
|.||.|.|...
T Consensus 1 K~gTPTMGGi~ 11 (13)
T PF10555_consen 1 KSGTPTMGGIV 11 (13)
T ss_pred CCCCccceeEE
Confidence 67888888764
No 39
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=61.17 E-value=6 Score=26.21 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.0
Q ss_pred cCCccEEEecCCCcCCCCC
Q psy410 28 SGSINCVCFDKTGTLTEDG 46 (93)
Q Consensus 28 ~~~v~~i~fDKTGTLT~~~ 46 (93)
++.++.++||--|||+...
T Consensus 3 ~~~~~~iiFD~DGTL~d~~ 21 (226)
T PRK13222 3 FMDIRAVAFDLDGTLVDSA 21 (226)
T ss_pred CCcCcEEEEcCCcccccCH
Confidence 4678999999999999653
No 40
>KOG0285|consensus
Probab=59.33 E-value=5.5 Score=30.14 Aligned_cols=21 Identities=38% Similarity=0.786 Sum_probs=16.4
Q ss_pred CchhhhhcCCccEEEecCCCc
Q psy410 21 SPRTINVSGSINCVCFDKTGT 41 (93)
Q Consensus 21 ~~~~~e~~~~v~~i~fDKTGT 41 (93)
.|.++|.=+.|-+-||||||+
T Consensus 402 qpGSl~sEagI~as~fDktg~ 422 (460)
T KOG0285|consen 402 QPGSLESEAGIFASCFDKTGS 422 (460)
T ss_pred cCCccccccceeEEeecccCc
Confidence 455666667788899999995
No 41
>PLN02954 phosphoserine phosphatase
Probab=46.22 E-value=15 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.2
Q ss_pred chhhhhcCCccEEEecCCCcCCCCCe
Q psy410 22 PRTINVSGSINCVCFDKTGTLTEDGL 47 (93)
Q Consensus 22 ~~~~e~~~~v~~i~fDKTGTLT~~~~ 47 (93)
.+.+|....++.++||==|||+....
T Consensus 3 ~~~~~~~~~~k~viFDfDGTL~~~~~ 28 (224)
T PLN02954 3 KDVLELWRSADAVCFDVDSTVCVDEG 28 (224)
T ss_pred HHHHHHHccCCEEEEeCCCcccchHH
Confidence 46788899999999999999998643
No 42
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=40.49 E-value=21 Score=24.03 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=22.0
Q ss_pred hhcCCccEEEecCCCcCCCCCeEEEEE
Q psy410 26 NVSGSINCVCFDKTGTLTEDGLDMWGV 52 (93)
Q Consensus 26 e~~~~v~~i~fDKTGTLT~~~~~v~~~ 52 (93)
..+|-+++-.||+-|+|-+|...+.=.
T Consensus 110 ~~l~wvn~~LFD~~~~Lr~G~~~L~~W 136 (178)
T cd08399 110 QLLYYVNLLLIDHRFLLRTGEYVLHMW 136 (178)
T ss_pred ceEEEEEEEEEcCCCceecCCEEEEEe
Confidence 344668999999999999999887543
No 43
>PRK14681 hypothetical protein; Provisional
Probab=39.88 E-value=36 Score=22.49 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 6 IYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 6 ~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
..+...|.++|.-+-..+.--..|.+|.|+.|.-|+ +.+++|..
T Consensus 51 ~~Aa~~L~~~Gy~IL~rN~R~~~GEIDIIa~d~~~~-----LVFVEVKt 94 (158)
T PRK14681 51 QYAAAWLEEHGWTTLSRNWHCRYGELDIVALNPEYT-----IVFVEVKT 94 (158)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEcCCce-----EEEEEEEe
Confidence 346677888998887777777899999999986444 45666664
No 44
>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.
Probab=36.15 E-value=19 Score=20.85 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=16.0
Q ss_pred hhhhhcCCc--cEEEec-CCCcCC
Q psy410 23 RTINVSGSI--NCVCFD-KTGTLT 43 (93)
Q Consensus 23 ~~~e~~~~v--~~i~fD-KTGTLT 43 (93)
..-+.+|.+ ..++|| +||.+.
T Consensus 14 ~~G~~lG~v~~~Dl~iD~~~G~I~ 37 (76)
T TIGR02888 14 NDGERLGVIGNIDLEIDEEDGRIL 37 (76)
T ss_pred CCCcEeeccccceEEEECCCCEEE
Confidence 334778999 799999 899654
No 45
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=35.35 E-value=28 Score=23.14 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.2
Q ss_pred cCCccEEEecCCCcCCCC
Q psy410 28 SGSINCVCFDKTGTLTED 45 (93)
Q Consensus 28 ~~~v~~i~fDKTGTLT~~ 45 (93)
-..++.++|||-.|||.-
T Consensus 38 ~~Gik~li~DkDNTL~~~ 55 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPP 55 (168)
T ss_pred hcCceEEEEcCCCCCCCC
Confidence 357899999999999943
No 46
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=33.45 E-value=31 Score=22.61 Aligned_cols=27 Identities=22% Similarity=-0.015 Sum_probs=22.8
Q ss_pred hhcCCccEEEecCCCcCCCCCeEEEEE
Q psy410 26 NVSGSINCVCFDKTGTLTEDGLDMWGV 52 (93)
Q Consensus 26 e~~~~v~~i~fDKTGTLT~~~~~v~~~ 52 (93)
..+|.+++-.||+-|+|-+|...+.=.
T Consensus 94 ~~iG~~ni~LFd~~~~Lr~G~~~L~lW 120 (158)
T cd08398 94 CPLAWGNINLFDYTDTLVSGKMALNLW 120 (158)
T ss_pred EEEEEEEEEEECCCChhhCCCEEEEEE
Confidence 457889999999999999999877543
No 47
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=33.28 E-value=29 Score=21.07 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=12.0
Q ss_pred cEEEecCCCcCCCC
Q psy410 32 NCVCFDKTGTLTED 45 (93)
Q Consensus 32 ~~i~fDKTGTLT~~ 45 (93)
+.++||.=|||+.+
T Consensus 1 k~~~~D~dgtL~~~ 14 (132)
T TIGR01662 1 KGVVLDLDGTLTDD 14 (132)
T ss_pred CEEEEeCCCceecC
Confidence 46899999999965
No 48
>PRK14677 hypothetical protein; Provisional
Probab=33.17 E-value=52 Score=20.17 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 6 IYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 6 ~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
..+...|.++|.-+-..+.--..|.+|.|+.|. ++ +.+++|..
T Consensus 8 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDlIa~~~-~~-----lvFVEVK~ 50 (107)
T PRK14677 8 ELACKFLKKKGYKILERNYRTKYGEIDIVARDG-RE-----IVFVEVKS 50 (107)
T ss_pred HHHHHHHHHCCCEEEEEEecCCCceeeEEEEEC-CE-----EEEEEEec
Confidence 456777888988887777777889999999985 44 45666654
No 49
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=31.77 E-value=32 Score=22.52 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.8
Q ss_pred hhcCCccEEEecCCCcCCCCCeEEE
Q psy410 26 NVSGSINCVCFDKTGTLTEDGLDMW 50 (93)
Q Consensus 26 e~~~~v~~i~fDKTGTLT~~~~~v~ 50 (93)
..+|.++.=.||+-|+|.+|...+.
T Consensus 107 ~~lG~~~~~LFd~~~~L~~G~~~L~ 131 (171)
T cd04012 107 EELGWVSLPLFDFRGVLRQGSLLLG 131 (171)
T ss_pred eEEEEEeEeeEcchhhhccCCEEEE
Confidence 4578899999999999999998774
No 50
>PF05902 4_1_CTD: 4.1 protein C-terminal domain (CTD); InterPro: IPR008379 There is a unique sequence domain at the C terminus of all known 4.1 proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24 kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates [].; GO: 0003779 actin binding, 0005198 structural molecule activity, 0005856 cytoskeleton
Probab=30.04 E-value=41 Score=21.17 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhhhhhcCCcCC
Q psy410 73 TEPLLAAMEKRCKVHKNMTLT 93 (93)
Q Consensus 73 ~~~l~~ai~~~~~~~~~~~~~ 93 (93)
.++|+.||.++-..+++|++|
T Consensus 84 DqaLa~aI~eAk~q~Pdm~Vt 104 (114)
T PF05902_consen 84 DQALAQAIKEAKEQHPDMSVT 104 (114)
T ss_pred HHHHHHHHHHHHHhCCCceEE
Confidence 357889999988888999875
No 51
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=27.68 E-value=46 Score=22.39 Aligned_cols=20 Identities=35% Similarity=0.606 Sum_probs=16.2
Q ss_pred CccEEEecCCCcCCCCCeEE
Q psy410 30 SINCVCFDKTGTLTEDGLDM 49 (93)
Q Consensus 30 ~v~~i~fDKTGTLT~~~~~v 49 (93)
.++.++||+=|||.......
T Consensus 3 ~~~~iiFDlDGTL~Ds~~~~ 22 (220)
T COG0546 3 MIKAILFDLDGTLVDSAEDI 22 (220)
T ss_pred CCCEEEEeCCCccccChHHH
Confidence 46789999999999776543
No 52
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=27.15 E-value=76 Score=20.78 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.5
Q ss_pred hhcCCccEEEecCCCcCCCC
Q psy410 26 NVSGSINCVCFDKTGTLTED 45 (93)
Q Consensus 26 e~~~~v~~i~fDKTGTLT~~ 45 (93)
+....++.|+||==||||.+
T Consensus 16 ~~~~~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 16 AKAENIRLLICDVDGVFSDG 35 (183)
T ss_pred HHhhCceEEEEcCCeeeecC
Confidence 55567999999999999987
No 53
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=26.36 E-value=38 Score=21.60 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred hhcCCccEEEecCCCcCCCCCeEEE
Q psy410 26 NVSGSINCVCFDKTGTLTEDGLDMW 50 (93)
Q Consensus 26 e~~~~v~~i~fDKTGTLT~~~~~v~ 50 (93)
..+|.++.=.||.-|+|.+|...+.
T Consensus 95 ~~iG~~~~~lFd~~~~L~~G~~~l~ 119 (156)
T cd08380 95 VPLGWVNVPLFDYKGKLRQGMITLN 119 (156)
T ss_pred eEEEEEeEEeEcccCcEecCCEEEe
Confidence 4578899999999999999998774
No 54
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=26.12 E-value=48 Score=24.43 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=34.1
Q ss_pred HHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEeC
Q psy410 9 QSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPV 55 (93)
Q Consensus 9 ~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~~ 55 (93)
..|+.+.|+=+..--.+|.+.+-+.++|--|| +|.|.+ +.++...
T Consensus 252 ~~R~~~mGid~~~vl~ledlv~gd~viFaATG-vT~G~l-L~GV~~~ 296 (332)
T COG1494 252 RARCKAMGIDVNKVLSLEDLVRGDNVIFAATG-VTDGDL-LKGVRFK 296 (332)
T ss_pred HHHHHHhCCChhheeeHHHhcCCCceEEEecc-CcCcch-hhceeec
Confidence 46778888866666668999999999999999 788876 4444443
No 55
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=26.12 E-value=34 Score=21.22 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=11.3
Q ss_pred ccEEEecCCCcCCCCCe
Q psy410 31 INCVCFDKTGTLTEDGL 47 (93)
Q Consensus 31 v~~i~fDKTGTLT~~~~ 47 (93)
.=+|.||.+|.++...+
T Consensus 79 ~~tV~Fd~~G~V~~~gf 95 (109)
T PRK11251 79 TYFVSFDDTGHVDNKGF 95 (109)
T ss_pred EEEEEECCCCCEEechh
Confidence 34567888887765543
No 56
>PRK14673 hypothetical protein; Provisional
Probab=25.56 E-value=45 Score=21.53 Aligned_cols=44 Identities=23% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 6 IYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 6 ~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
..+...|.++|.-+-..+.--..|.+|.|+.|+-|+| .+++|..
T Consensus 34 ~~A~~~L~~~Gy~IL~rN~r~~~GEIDLIa~~~~~~l-----VFVEVKt 77 (137)
T PRK14673 34 DRALAFLQRAGLALVARNYRCRGGEIDLVMRERDGTL-----VFVEVRA 77 (137)
T ss_pred HHHHHHHHHCCCEEeEeEecCCCCccCHHHccCCcEE-----EEEEEEe
Confidence 3466778888888877777778999999999875554 5666654
No 57
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=25.17 E-value=48 Score=21.68 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=21.8
Q ss_pred hhcCCccEEEecCCCcCCCCCeEEEE
Q psy410 26 NVSGSINCVCFDKTGTLTEDGLDMWG 51 (93)
Q Consensus 26 e~~~~v~~i~fDKTGTLT~~~~~v~~ 51 (93)
..+|.++.-.||+-|+|-+|...+.=
T Consensus 95 ~~vg~~~~~lFd~~g~Lr~G~~~l~l 120 (159)
T cd08397 95 VPFGGTTLSLFNKDGTLRRGRQKLRV 120 (159)
T ss_pred eEEEEEEEeeECCCCcEecCCEEEEE
Confidence 34688899999999999999987753
No 58
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=24.49 E-value=45 Score=23.39 Aligned_cols=11 Identities=55% Similarity=0.981 Sum_probs=10.3
Q ss_pred cEEEecCCCcC
Q psy410 32 NCVCFDKTGTL 42 (93)
Q Consensus 32 ~~i~fDKTGTL 42 (93)
++|.|||-|+|
T Consensus 155 nviyf~k~gnl 165 (235)
T PF11359_consen 155 NVIYFDKDGNL 165 (235)
T ss_pred heEEEccCCCc
Confidence 68999999999
No 59
>PRK14678 hypothetical protein; Provisional
Probab=23.57 E-value=1.1e+02 Score=19.06 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 6 IYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 6 ~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
..+...|.++|.-+-..+.--..|.+|.|+.|. ++ +.+++|..
T Consensus 14 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~-~~-----lvFVEVKt 56 (120)
T PRK14678 14 QVAAAYLERCGYTIIARNWRCRAGEIDIVAREG-DQ-----LVFVEVRT 56 (120)
T ss_pred HHHHHHHHHCCCEEeeeeecCCCCCEeeeEEeC-CE-----EEEEEEEE
Confidence 356777888998888777777899999999984 33 45666654
No 60
>COG5468 Predicted secreted (periplasmic) protein [Function unknown]
Probab=23.41 E-value=87 Score=20.94 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=23.5
Q ss_pred CCccEEEec-CCC-cCCCCCeEEEEEEeCChhhHH
Q psy410 29 GSINCVCFD-KTG-TLTEDGLDMWGVVPVHDCKFL 61 (93)
Q Consensus 29 ~~v~~i~fD-KTG-TLT~~~~~v~~~~~~~~~~~~ 61 (93)
-..+.+..| |+| +++.|+-+|..-+...+++|.
T Consensus 107 mt~~y~Ltdak~G~~v~~Grr~vtas~D~p~QefA 141 (172)
T COG5468 107 MTADYVLTDAKDGAEVHKGRRSVTASFDRPRQEFA 141 (172)
T ss_pred EEeeEEEEecCCCCEeeecceeEEEEecCcccHHH
Confidence 345677788 999 899999888766655445553
No 61
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=22.91 E-value=58 Score=22.45 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=15.1
Q ss_pred CCccEEEecCCCcCCCCC
Q psy410 29 GSINCVCFDKTGTLTEDG 46 (93)
Q Consensus 29 ~~v~~i~fDKTGTLT~~~ 46 (93)
..++.|+||.=|||....
T Consensus 2 ~~~k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFG 19 (267)
T ss_pred CceEEEEEcCCCCeecCC
Confidence 357899999999999863
No 62
>PRK14683 hypothetical protein; Provisional
Probab=22.14 E-value=1.2e+02 Score=19.04 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 6 IYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 6 ~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
..+...|.++|.-+-..+.--..|.+|.|+-|. + .+.+++|..
T Consensus 21 ~~A~~~L~~~Gy~Il~rN~r~~~GEIDIIa~~~-~-----~lVFVEVKt 63 (122)
T PRK14683 21 VLIILFLKCKLYHIIKHRYRCPLGEIDIIAHKN-K-----QLVFIEVKT 63 (122)
T ss_pred HHHHHHHHHCCCEEEeeecCCCCCcEEEEEEeC-C-----EEEEEEEee
Confidence 456778888998888777777899999999874 3 345555553
No 63
>COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=21.92 E-value=1e+02 Score=19.24 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCeEeeCchhhhhcCCccEEEecCCCcCCCCCeEEEEEEe
Q psy410 6 IYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVP 54 (93)
Q Consensus 6 ~~~~~~~~~~gil~k~~~~~e~~~~v~~i~fDKTGTLT~~~~~v~~~~~ 54 (93)
..+...|.++|.-+-..+.-...|.+|.|.-| .||| ..++|..
T Consensus 10 ~~A~~~L~~~G~~il~rN~r~r~GEIDlIa~~-~~~i-----vFVEVK~ 52 (114)
T COG0792 10 DLAARFLESKGLRILARNWRCRYGEIDLIARD-GDTV-----VFVEVKY 52 (114)
T ss_pred HHHHHHHHHcCcchhhhhccCCCCceEEEEec-CCEE-----EEEEEEe
Confidence 35677788999988888899999999999988 5554 3455544
No 64
>KOG0983|consensus
Probab=21.16 E-value=1.1e+02 Score=22.77 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=33.8
Q ss_pred CchhHHHHHHHHH-HCCeEeeCchh----hhhcCCccEEEecCCCcCCCCC
Q psy410 1 MTVGRIYAQSRLQ-KNNIYCISPRT----INVSGSINCVCFDKTGTLTEDG 46 (93)
Q Consensus 1 ~tia~~~~~~~~~-~~gil~k~~~~----~e~~~~v~~i~fDKTGTLT~~~ 46 (93)
+++++..++..+. |+||+-|+-.- +..-|+++..-|.=.|-|++.+
T Consensus 196 ~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSk 246 (391)
T KOG0983|consen 196 MTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSK 246 (391)
T ss_pred hHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeeccc
Confidence 4678888888887 78898886543 4555778877787788777665
No 65
>KOG3085|consensus
Probab=20.89 E-value=60 Score=22.88 Aligned_cols=17 Identities=41% Similarity=0.470 Sum_probs=14.0
Q ss_pred cCCccEEEecCCCcCCC
Q psy410 28 SGSINCVCFDKTGTLTE 44 (93)
Q Consensus 28 ~~~v~~i~fDKTGTLT~ 44 (93)
+..++.+.||-+|||-.
T Consensus 4 ~~~iravtfD~~~tLl~ 20 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLA 20 (237)
T ss_pred ccceEEEEEeCCCceee
Confidence 34678999999999975
No 66
>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....
Probab=20.84 E-value=41 Score=18.57 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=19.9
Q ss_pred HHHHCCeEeeCchhhhhcCCccEEEecC-CCcCC
Q psy410 11 RLQKNNIYCISPRTINVSGSINCVCFDK-TGTLT 43 (93)
Q Consensus 11 ~~~~~gil~k~~~~~e~~~~v~~i~fDK-TGTLT 43 (93)
.+....++-+++ +.+|.+..++||- +|.++
T Consensus 8 ~l~g~~V~~~~G---~~iG~V~di~id~~~~~i~ 38 (79)
T PF05239_consen 8 ELIGKEVIDRDG---EKIGKVKDIVIDPKTGKIV 38 (79)
T ss_dssp HHTTSEEEETTS---CEEEEEEEEEEETTTTEEE
T ss_pred HccCCEEEcCCC---CEEEEEEEEEEeCCCCCEE
Confidence 344445555554 7889999999985 66443
No 67
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=20.74 E-value=70 Score=20.31 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=13.8
Q ss_pred ccEEEecCCCcCCCCCe
Q psy410 31 INCVCFDKTGTLTEDGL 47 (93)
Q Consensus 31 v~~i~fDKTGTLT~~~~ 47 (93)
++.++||.=|||..++.
T Consensus 1 ~~~~~~D~Dgtl~~~~~ 17 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKI 17 (154)
T ss_pred CeEEEEeCceeEEcCeE
Confidence 46789999999998643
Done!