RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy410
(93 letters)
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 34.9 bits (81), Expect = 0.001
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 29 GSINCVCFDKTGTLTE 44
GS + +C DKTGTLT+
Sbjct: 378 GSTSVICSDKTGTLTQ 393
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 34.9 bits (81), Expect = 0.002
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 29 GSINCVCFDKTGTLTE 44
GS + +C DKTGTLT+
Sbjct: 373 GSTSTICSDKTGTLTQ 388
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 34.2 bits (79), Expect = 0.003
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 29 GSINCVCFDKTGTLTED 45
++ +C DKTGTLT +
Sbjct: 321 AGMDVLCSDKTGTLTLN 337
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 34.2 bits (79), Expect = 0.003
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 29 GSINCVCFDKTGTLTED 45
+ +C DKTGTLT++
Sbjct: 370 AGVEILCSDKTGTLTKN 386
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 33.2 bits (77), Expect = 0.005
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 31 INCVCFDKTGTLTE 44
+ V FDKTGTLTE
Sbjct: 13 LQAVIFDKTGTLTE 26
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 33.2 bits (77), Expect = 0.005
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 31 INCVCFDKTGTLTE 44
I+ + F+KTGTLT
Sbjct: 28 IDTIIFEKTGTLTY 41
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 32.8 bits (76), Expect = 0.007
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 29 GSINCVCFDKTGTLTE 44
+ V FDKTGTLT+
Sbjct: 30 EKVTAVIFDKTGTLTK 45
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 32.5 bits (75), Expect = 0.010
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 29 GSINCVCFDKTGTLTE 44
+ V FDKTGTLT+
Sbjct: 402 EKVTAVIFDKTGTLTK 417
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 32.1 bits (74), Expect = 0.012
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 31 INCVCFDKTGTLTE 44
+N + DKTGTLTE
Sbjct: 420 VNTLVVDKTGTLTE 433
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 31.8 bits (73), Expect = 0.017
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 29 GSINCVCFDKTGTLTE 44
G + +C DKTGTLT
Sbjct: 344 GCTSVICSDKTGTLTT 359
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 31.7 bits (73), Expect = 0.021
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 31 INCVCFDKTGTLTE 44
+ V FDKTGTLT+
Sbjct: 326 VTAVIFDKTGTLTK 339
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.16
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 26/99 (26%)
Query: 9 QSRLQKNN--------IYCIS----PRTINVSG---SINCVCFDKTGTLTEDGLDMWGV- 52
Q + K N + IS + + VSG S+ + GLD +
Sbjct: 350 QDYVNKTNSHLPAGKQVE-ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 53 ----VPVHDCKFLAPVKRP--SSL--PPTEPLLAAMEKR 83
+FL PV P S L P ++ + + K
Sbjct: 409 FSERKLKFSNRFL-PVASPFHSHLLVPASDLINKDLVKN 446
Score = 26.6 bits (58), Expect = 1.6
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 35/95 (36%)
Query: 5 RIYAQ-----------SRLQKNNIYCISP----RTINVSGSI--NCV-CFDKTGTLTEDG 46
++ A L+ +Y I S + + G
Sbjct: 155 QLVAIFGGQGNTDDYFEELRD--LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 47 LDM--WGVVPVHDCKFLAPVKRPSSLPPTEPLLAA 79
L++ W ++ PS+ P + LL+
Sbjct: 213 LNILEW-------------LENPSNTPDKDYLLSI 234
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.27
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 8/26 (30%)
Query: 64 VKR-PSSL----PPTEPLL---AAME 81
+K+ +SL + P L A ME
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 28.0 bits (63), Expect = 0.43
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 12 LQKNNIYCISPRTINVSGSINCVCFDKTGTL---TEDGLDMW 50
+K+ +N + L T +GL M+
Sbjct: 114 EEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTPEGLIMF 155
Score = 24.2 bits (53), Expect = 9.9
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 5 RIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTL---TEDGL 47
I +++ KN ++ S S I + D L T + L
Sbjct: 239 LINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDL 284
>3ott_A Two-component system sensor histidine kinase; beta-propeller,
beta-sandwich, transcription; HET: TBR; 2.30A
{Bacteroides thetaiotaomicron}
Length = 758
Score = 27.3 bits (61), Expect = 0.74
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 15 NNIYCISPRT-------INVSGSINCVCFDKTGTL---TEDGL 47
++ P T + SI + D G L T++GL
Sbjct: 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGTDNGL 253
Score = 27.3 bits (61), Expect = 0.75
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 13/44 (29%)
Query: 17 IYCISPRTINV----------SGSINCVCFDKTGTL---TEDGL 47
I I+PRT V S N + D+ G L G+
Sbjct: 495 IDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGGV 538
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 25.2 bits (55), Expect = 3.3
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 15 NNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCKFLAPVK 65
+ +N+ I F ++ + L V+ + P+K
Sbjct: 135 MHAGLPKYVNVNL-TDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLK 184
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 25.1 bits (55), Expect = 3.9
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 28 SGSINCVCFDKTGTL----TEDG-LDMW 50
G+++ +C D+ + T G +D+W
Sbjct: 214 HGAVSSICIDEECCVLILGTTRGIIDIW 241
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 25.0 bits (55), Expect = 5.1
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 12 LQKNNIYCISPRTINVSGSINCVCFDKTGTL---TEDGL 47
+ + S +IN + G + T +GL
Sbjct: 522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGL 560
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 24.7 bits (53), Expect = 5.4
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 5 RIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMW 50
++Y R +++ + P + ++ D L +W
Sbjct: 148 KLYGLGR----DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 23.4 bits (51), Expect = 8.7
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 25 INVSGSINCVCFDKTG-TLTEDG 46
+N G C C K G L +D
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQDQ 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.427
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,381,968
Number of extensions: 68066
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 25
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)