RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy410
         (93 letters)



>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 217

 Score = 26.0 bits (56), Expect = 0.59
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 30 SINCVCFDKTGTLT-EDGLDMW 50
          S + VCFD   T+  E+G+D  
Sbjct: 9  SADAVCFDVDSTVIREEGIDEL 30


>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 380

 Score = 25.2 bits (54), Expect = 1.4
 Identities = 6/59 (10%), Positives = 16/59 (27%), Gaps = 6/59 (10%)

Query: 1  MTVGRIYAQSRLQKNNIYCISPRTINVSGSINCVCFDKTGTLTEDGLDMWGVVPVHDCK 59
          ++  R +  S L    +       + +   I    ++          D+   +   D  
Sbjct: 13 LSEERCFDVSALTVYELLM-DKCYLGLHSHI---DWETLTDNDIQ--DIRNRIFQKDKI 65


>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f
           complex, soluble domain {Mastigocladus laminosus [TaxId:
           83541]}
          Length = 134

 Score = 24.7 bits (53), Expect = 1.6
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)

Query: 31  INCVCFDKTGTLTEDGLDMWGVVPVHDCKFLAPVKRPSSLPPTEPL 76
           IN VC      +  +  +     P H  ++     +    P    L
Sbjct: 59  INAVCTHLGCVVPWNAAENKFKCPCHGSQY-DETGKVIRGPAPLSL 103


>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
          domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 168

 Score = 24.4 bits (52), Expect = 2.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 34 VCFDKTGTLTEDGLD 48
          +C DKTGTLT + LD
Sbjct: 5  ICSDKTGTLTTNQLD 19


>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 230

 Score = 23.8 bits (50), Expect = 4.2
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 31 INCVCFDKTGTLTED 45
          I  +  D  GT+T  
Sbjct: 2  IKAISIDIDGTITYP 16


>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1,  Mdp1
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 164

 Score = 22.9 bits (48), Expect = 7.1
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 33 CVCFDKTGTLTEDGLDMWGVVPVH 56
             FD   TL    +D     P H
Sbjct: 7  LAVFDLDYTLWPFWVDTHVDPPFH 30


>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal
          subdomain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 113

 Score = 22.8 bits (49), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 8  AQSRLQKNNIYCISPRTIN 26
            S+LQ NN+Y I+ R + 
Sbjct: 40 VSSKLQNNNVYTIAKRNVE 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 346,899
Number of extensions: 13795
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 11
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)