BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4101
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+GPKD LQ + IPV+HDL VG+NLQDH+ M L + +PV
Sbjct: 252 VLLCAGAIASPQILQRSGVGPKDLLQGLDIPVVHDLPGVGENLQDHLEMY-LQYACKEPV 310
Query: 72 SI 73
S+
Sbjct: 311 SL 312
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+GPKD LQ + I V+HDL VG+NLQDH+ M L + +PV
Sbjct: 252 VLLCAGAIASPQILQRSGVGPKDLLQRLDISVVHDLPGVGENLQDHLEMY-LQYACKEPV 310
Query: 72 SI 73
S+
Sbjct: 311 SL 312
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 2 GMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM 60
G L + ++++AG IG+P+++M+SG+GP HL++ GIPV+ DL VG+NLQDH G+
Sbjct: 237 GTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDHFGV 296
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G +HL++ IPV+H+L VG+NLQDH+ M + + KP+
Sbjct: 256 VLLCAGAIASPQILQRSGVGNPEHLEEFDIPVVHELPGVGENLQDHLEMY-IQYECKKPI 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/49 (61%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 11 SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHV 58
+ V+LSAG++GSPQ+L +SGIGPK L+ GI V HDL VG+NLQDH+
Sbjct: 249 TEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDHL 297
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+S+G I SPQ+L SG+GP+ L+ + IPV+HDL VG+NLQDH+ + L + +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+S+G I SPQ+L SG+GP+ L+ + IPV+HDL VG+NLQDH+ + L + +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA
PE=3 SV=1
Length = 565
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+S+G I SPQ+L SG+GP+ L+ + IPV+HDL VG+NLQDH+ + L + +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+S+G I SPQ+L SG+GP+ L+ + IPV+HDL VG+NLQDH+ + L + +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+S+G I SPQ+L SG+GP+ L+ + IPV+HDL VG+NLQDH+ + L + +PV
Sbjct: 256 VIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/55 (60%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 6 HRPQASN-VILSAGTIGSPQILMISGIGPKDHLQDMGIPVI-HDLRVGDNLQDHV 58
HR AS VILS G I SPQ+LM+SGIG D L+ +GIPV+ H VG NLQDH+
Sbjct: 284 HRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHL 338
>sp|Q5UPK7|YL128_MIMIV Putative GMC-type oxidoreductase L128 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L128 PE=3 SV=1
Length = 563
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDL-RVGDNLQDH 57
+ILSAG + +PQILM SG+GP DHL ++GIPV+ D+ VG +L DH
Sbjct: 311 IILSAGALRTPQILMQSGVGPADHLNELGIPVVSDMPDVGQHLDDH 356
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L G I SPQIL SG+GP + L + IPV+HDL VG NLQDH+ M L + +PV
Sbjct: 258 VLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMY-LQYACTQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L G I SPQIL SG+GP + L + IPV+HDL VG NLQDH+ M L + +PV
Sbjct: 258 VLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMY-LQYACTQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|Q88AE7|BETA_PSESM Choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=betA PE=3 SV=1
Length = 568
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L G I SPQIL SG+GP + L + IPV+HDL VG NLQDH+ M L + +PV
Sbjct: 258 VLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMY-LQYACTQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L G I SPQIL SG+G + L+++GIPV+H+L VG+NLQDH+ M + + +P+
Sbjct: 256 VLLCGGAIASPQILQRSGVGNPEWLKELGIPVVHELPGVGENLQDHLEMY-IQYECKEPI 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7)
GN=betA PE=3 SV=1
Length = 561
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V++ +G I SPQ+L SG+GP L+D+ IPV+HDL VG NLQDH+ + L + +PV
Sbjct: 256 VLVCSGAIASPQLLQRSGVGPAALLRDLDIPVVHDLPGVGANLQDHLELY-LQYACKQPV 314
Query: 72 SI 73
SI
Sbjct: 315 SI 316
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+ +G I SPQ+L SG+GP L+ + IPV+HDL VG+NLQDH+ + L + +PV
Sbjct: 256 VIVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1
Length = 561
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V++ +G I SPQ+L SG+GP L+D+ IPV+HDL VG NLQDH+ + L + +PV
Sbjct: 256 VLVCSGAIASPQLLQRSGVGPAALLRDLDIPVVHDLPGVGANLQDHLELY-LQYACKQPV 314
Query: 72 SI 73
SI
Sbjct: 315 SI 316
>sp|B7V5R3|BETA_PSEA8 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58)
GN=betA PE=3 SV=1
Length = 561
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V++ +G I SPQ+L SG+GP L+D+ IPV+HDL VG NLQDH+ + L + +PV
Sbjct: 256 VLVCSGAIASPQLLQRSGVGPAALLRDLDIPVVHDLPGVGANLQDHLELY-LQYACKQPV 314
Query: 72 SI 73
SI
Sbjct: 315 SI 316
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G + L+ IPV+HDL VG+NLQDH+ M L + +PV
Sbjct: 254 VLLCAGAIASPQILQRSGVGNAELLKQFDIPVVHDLPGVGENLQDHLEMY-LQYECKEPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G + L+ IPV+HDL VG+NLQDH+ M L + +PV
Sbjct: 254 VLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLEMY-LQYECKEPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
>sp|B5Y008|BETA_KLEP3 Choline dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betA
PE=3 SV=1
Length = 554
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G + L+ IPV+HDL VG+NLQDH+ M L + +PV
Sbjct: 254 VLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLEMY-LQYECKEPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+SA + SP++LM+SGIGP HLQDMGI V D VG NLQDH+ + KPV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDHMEFY-FQQVSTKPV 304
Query: 72 SI 73
S+
Sbjct: 305 SL 306
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V++ +G I SPQ+L SG+GP L+ + IPV+HDL VG+NLQDH+ + L + +PV
Sbjct: 256 VLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPV 314
Query: 72 SI 73
S+
Sbjct: 315 SL 316
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G + L + IP++HDL VG+NLQDH+ M L + +PV
Sbjct: 254 VLLCAGAIASPQILQRSGVGSAELLAEFDIPLVHDLPGVGENLQDHLEMY-LQYECKEPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G + L + IP++HDL VG+NLQDH+ M L + +PV
Sbjct: 254 VLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLEMY-LQYECKEPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G + L + IP++HDL VG+NLQDH+ M L + +PV
Sbjct: 254 VLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLEMY-LQYECKEPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 10 ASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVI-HDLRVGDNLQDHV 58
+ VILS G I SPQ+LM+SG+G D L+ +GIPV+ H VG NLQDH+
Sbjct: 294 SREVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHL 343
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+SA + SP++LM+SGIGP HLQ+MGI V D VG NLQDH+ + KPV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDHMEFY-FQQVSTKPV 304
Query: 72 SI 73
S+
Sbjct: 305 SL 306
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G L+ M I V+HDL VG+NLQDH+ M L + +PV
Sbjct: 258 VLLCAGAIASPQILQRSGVGESTFLKSMDIDVVHDLPGVGENLQDHLEMY-LQYKCKQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 11 SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPV-IHDLRVGDNLQDHV 58
S VI+SA + SP++LM+SGIGP HLQ+MGI V I VG NLQDH+
Sbjct: 244 SEVIVSASSFNSPKLLMLSGIGPGQHLQEMGIEVKIDRPGVGANLQDHM 292
>sp|B0V945|BETA_ACIBY Choline dehydrogenase OS=Acinetobacter baumannii (strain AYE)
GN=betA PE=3 SV=1
Length = 552
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G L+ M I V+HDL VG+NLQDH+ M L + +PV
Sbjct: 258 VLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHLEMY-LQYKCKQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|B0VST3|BETA_ACIBS Choline dehydrogenase OS=Acinetobacter baumannii (strain SDF)
GN=betA PE=3 SV=1
Length = 552
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G L+ M I V+HDL VG+NLQDH+ M L + +PV
Sbjct: 258 VLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHLEMY-LQYKCKQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|B2HV79|BETA_ACIBC Choline dehydrogenase OS=Acinetobacter baumannii (strain ACICU)
GN=betA PE=3 SV=1
Length = 552
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G L+ M I V+HDL VG+NLQDH+ M L + +PV
Sbjct: 258 VLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHLEMY-LQYKCKQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|B7I895|BETA_ACIB5 Choline dehydrogenase OS=Acinetobacter baumannii (strain AB0057)
GN=betA PE=3 SV=1
Length = 552
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G L+ M I V+HDL VG+NLQDH+ M L + +PV
Sbjct: 258 VLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHLEMY-LQYKCKQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|B7GYG5|BETA_ACIB3 Choline dehydrogenase OS=Acinetobacter baumannii (strain
AB307-0294) GN=betA PE=3 SV=1
Length = 552
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+G L+ M I V+HDL VG+NLQDH+ M L + +PV
Sbjct: 258 VLLCAGAIASPQILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHLEMY-LQYKCKQPV 316
Query: 72 SI 73
S+
Sbjct: 317 SL 318
>sp|Q02DZ0|BETA_PSEAB Choline dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=betA PE=3 SV=1
Length = 561
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V++ +G I SPQ+L SG+GP L+D+ IP +HDL VG NLQDH+ + L + +PV
Sbjct: 256 VLVCSGAIASPQLLQRSGVGPAALLRDLDIPAVHDLPGVGANLQDHLELY-LQYACKQPV 314
Query: 72 SI 73
SI
Sbjct: 315 SI 316
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 6 HRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGI-PVIHDLRVGDNLQDHV 58
H A VILS G I SPQ+L +SGIG +HL+ +GI P IH VG+N +DH+
Sbjct: 246 HTESAKEVILSGGAINSPQLLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHL 299
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L +G I SPQIL SG+GP L+D+ IPV+ DL VG NLQDH+ M + + +PV
Sbjct: 255 VLLCSGAIASPQILQRSGVGPGGWLRDLDIPVVLDLPGVGQNLQDHLEMY-MQYECKEPV 313
Query: 72 SI 73
S+
Sbjct: 314 SL 315
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 6 HRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGI-PVIHDLRVGDNLQDHV 58
H A VILS G I SPQ+L +SGIG +HL+ +GI P IH VG+N +DH+
Sbjct: 246 HTVNAKEVILSGGAINSPQLLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHL 299
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHV 58
V+LSAG + SP IL++SG+GPKD LQ + + +H+L VG NL +HV
Sbjct: 316 VVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHV 362
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L AG I SPQIL SG+GP L + I ++H+L VG+NLQDH+ M L + KPV
Sbjct: 254 VLLCAGAIASPQILQRSGVGPAALLNRLDIDLVHELPGVGENLQDHLEMY-LQYACKKPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 5 RHRPQAS-NVILSAGTIGSPQILMISGIGPKDHLQDMGIPVI-HDLRVGDNLQDHV 58
RH+ S VILS G I SPQ+LM+SG+G D L+ + IPV+ H VG NLQDH+
Sbjct: 285 RHKAYVSREVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHL 340
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+SA + SP++LM+SGIGP HL+DMGI V D VG NLQDH+ + KPV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDHMEFY-FQQVSTKPV 304
Query: 72 SI 73
S+
Sbjct: 305 SL 306
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+SA + SP++LM+SGIGP +HL++MGI V D VG NLQDH+ + KPV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGEHLKEMGIEVKADRPGVGANLQDHMEFY-FQQVSTKPV 304
Query: 72 SI 73
S+
Sbjct: 305 SL 306
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+SA + SP++LM+SGIGP HL DMGI V D VG NLQDH+ + KPV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGQHLNDMGIAVKADRPGVGANLQDHMEFY-FQQVSTKPV 304
Query: 72 SI 73
S+
Sbjct: 305 SL 306
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 2 GMLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGI-PVIHDLRVGDNLQDHVGM 60
G LR + VI SAG+IGS Q+L +SGIGPK L+ G+ PV H VG NLQDH+ +
Sbjct: 240 GELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVYHLPGVGQNLQDHLEV 299
Query: 61 AGLTFLVDKPVSI 73
+ KP+++
Sbjct: 300 Y-FQYHCQKPITL 311
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L G I SPQIL SGIGP + LQ + IP++ L VG+NLQDH+ M L + +PV
Sbjct: 254 VLLCGGAIASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYSCKQPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
V+L G I SPQIL SGIGP + LQ + IP++ L VG+NLQDH+ M L + +PV
Sbjct: 254 VLLCGGAIASPQILQRSGIGPAELLQRLDIPLVQALPGVGENLQDHLEMY-LQYSCKQPV 312
Query: 72 SI 73
S+
Sbjct: 313 SL 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,147,006
Number of Sequences: 539616
Number of extensions: 1061311
Number of successful extensions: 2746
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2497
Number of HSP's gapped (non-prelim): 164
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)