Query psy4101
Match_columns 82
No_of_seqs 159 out of 1025
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:00:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 99.9 1.9E-24 4.2E-29 174.6 4.8 72 3-75 299-372 (623)
2 PRK02106 choline dehydrogenase 99.8 3.6E-21 7.8E-26 151.3 6.5 64 7-71 248-312 (560)
3 TIGR01810 betA choline dehydro 99.8 7.9E-21 1.7E-25 148.4 6.2 65 6-71 239-305 (532)
4 PF00732 GMC_oxred_N: GMC oxid 99.8 1.2E-21 2.7E-26 140.9 -0.2 54 5-58 242-295 (296)
5 PLN02785 Protein HOTHEAD 99.8 1.8E-20 3.8E-25 150.1 5.7 60 10-70 278-339 (587)
6 COG2303 BetA Choline dehydroge 99.6 1.6E-15 3.4E-20 120.5 3.4 65 6-71 250-316 (542)
7 TIGR02462 pyranose_ox pyranose 99.1 1.9E-10 4.1E-15 92.4 6.4 64 4-70 262-326 (544)
8 PTZ00383 malate:quinone oxidor 75.2 4.9 0.00011 32.3 4.1 26 7-33 259-284 (497)
9 PF13738 Pyr_redox_3: Pyridine 73.0 2 4.3E-05 28.7 1.2 25 6-30 123-147 (203)
10 PRK08274 tricarballylate dehyd 62.3 11 0.00024 29.1 3.5 29 5-33 176-204 (466)
11 PF01266 DAO: FAD dependent ox 60.8 9.9 0.00021 26.9 2.8 25 7-32 189-213 (358)
12 PF00890 FAD_binding_2: FAD bi 56.3 15 0.00033 27.6 3.3 19 4-22 186-204 (417)
13 PRK13339 malate:quinone oxidor 39.5 46 0.001 26.9 3.8 26 7-33 233-258 (497)
14 TIGR03378 glycerol3P_GlpB glyc 39.2 28 0.00061 27.7 2.5 24 6-29 307-330 (419)
15 PRK12835 3-ketosteroid-delta-1 36.7 29 0.00064 28.2 2.3 23 5-27 258-282 (584)
16 PRK12834 putative FAD-binding 36.1 33 0.00071 27.4 2.5 22 5-26 211-233 (549)
17 TIGR01320 mal_quin_oxido malat 36.1 58 0.0012 25.9 3.8 26 7-33 226-251 (483)
18 PRK12837 3-ketosteroid-delta-1 35.7 40 0.00086 26.8 2.9 23 5-27 218-242 (513)
19 PF06039 Mqo: Malate:quinone o 35.5 80 0.0017 26.0 4.6 31 4-35 227-257 (488)
20 PRK07843 3-ketosteroid-delta-1 35.0 41 0.00089 27.1 2.9 20 5-24 252-272 (557)
21 PRK05257 malate:quinone oxidor 34.6 54 0.0012 26.3 3.5 25 7-32 232-256 (494)
22 COG0579 Predicted dehydrogenas 33.3 87 0.0019 25.1 4.4 26 8-34 198-223 (429)
23 TIGR01816 sdhA_forward succina 31.2 49 0.0011 26.7 2.8 18 5-22 165-182 (565)
24 PRK07121 hypothetical protein; 31.1 60 0.0013 25.4 3.2 18 5-22 222-240 (492)
25 PRK06452 sdhA succinate dehydr 30.9 52 0.0011 26.6 2.9 17 5-21 182-198 (566)
26 TIGR03377 glycerol3P_GlpA glyc 29.8 76 0.0017 25.0 3.6 25 6-31 175-199 (516)
27 PRK11728 hydroxyglutarate oxid 29.5 90 0.002 23.4 3.8 26 7-33 190-215 (393)
28 PRK06175 L-aspartate oxidase; 28.4 47 0.001 25.8 2.2 17 6-22 174-190 (433)
29 PRK05675 sdhA succinate dehydr 28.3 56 0.0012 26.5 2.6 18 5-22 173-190 (570)
30 PLN02815 L-aspartate oxidase 26.9 65 0.0014 26.5 2.8 17 5-21 206-222 (594)
31 PRK09078 sdhA succinate dehydr 26.5 64 0.0014 26.3 2.7 18 5-22 196-213 (598)
32 TIGR01813 flavo_cyto_c flavocy 24.6 74 0.0016 24.2 2.6 16 7-22 178-193 (439)
33 PF04298 Zn_peptidase_2: Putat 24.6 56 0.0012 24.2 1.9 34 37-70 47-80 (222)
34 PRK12844 3-ketosteroid-delta-1 24.6 84 0.0018 25.4 3.0 18 5-22 252-270 (557)
35 PRK06263 sdhA succinate dehydr 24.2 71 0.0015 25.5 2.5 18 5-22 181-198 (543)
36 PRK12845 3-ketosteroid-delta-1 24.0 85 0.0018 25.6 2.9 20 5-24 261-281 (564)
37 PRK06481 fumarate reductase fl 23.8 92 0.002 24.7 3.1 19 5-23 235-253 (506)
38 PRK06134 putative FAD-binding 23.5 99 0.0021 25.1 3.2 21 6-26 262-283 (581)
39 PRK07395 L-aspartate oxidase; 23.3 83 0.0018 25.5 2.8 16 6-21 182-197 (553)
40 TIGR03364 HpnW_proposed FAD de 22.8 64 0.0014 23.7 1.9 15 7-21 183-197 (365)
41 PRK07573 sdhA succinate dehydr 22.8 82 0.0018 26.0 2.7 17 6-22 217-233 (640)
42 PRK12843 putative FAD-binding 22.6 1.1E+02 0.0024 24.8 3.4 19 5-23 265-284 (578)
43 PRK08958 sdhA succinate dehydr 22.6 77 0.0017 25.8 2.5 18 5-22 190-207 (588)
44 PRK08641 sdhA succinate dehydr 22.4 86 0.0019 25.5 2.7 18 5-22 184-201 (589)
45 PLN00128 Succinate dehydrogena 22.3 88 0.0019 25.9 2.8 18 5-22 234-251 (635)
46 TIGR02352 thiamin_ThiO glycine 22.1 65 0.0014 22.9 1.8 15 7-21 179-193 (337)
47 PRK07512 L-aspartate oxidase; 21.8 83 0.0018 25.1 2.5 16 6-21 182-197 (513)
48 PRK08071 L-aspartate oxidase; 21.5 89 0.0019 24.9 2.6 17 6-22 175-191 (510)
49 PTZ00306 NADH-dependent fumara 21.3 83 0.0018 28.0 2.5 18 5-22 604-621 (1167)
50 TIGR02485 CobZ_N-term precorri 21.2 1.2E+02 0.0026 23.2 3.2 21 6-26 168-188 (432)
51 KOG0404|consensus 21.2 36 0.00078 26.2 0.3 35 6-43 109-143 (322)
52 PTZ00139 Succinate dehydrogena 21.1 87 0.0019 25.8 2.5 18 5-22 213-230 (617)
53 PRK07803 sdhA succinate dehydr 21.1 94 0.002 25.5 2.7 18 5-22 197-214 (626)
54 PRK12839 hypothetical protein; 20.5 88 0.0019 25.5 2.4 17 6-22 260-277 (572)
55 PRK09077 L-aspartate oxidase; 20.5 1E+02 0.0022 24.7 2.7 18 5-22 191-208 (536)
No 1
>KOG1238|consensus
Probab=99.90 E-value=1.9e-24 Score=174.58 Aligned_cols=72 Identities=54% Similarity=0.863 Sum_probs=63.2
Q ss_pred ceeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCccccc
Q psy4101 3 MLRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPVSIVQ 75 (82)
Q Consensus 3 ~~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~~~~~ 75 (82)
.+.++++| ||||||||||+||||||+|||||+++|+++|||++.|+| ||+|||||+..+.+++..+ +.+..+
T Consensus 299 ~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~-~~~~~~ 372 (623)
T KOG1238|consen 299 GKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTN-PVELSL 372 (623)
T ss_pred ceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCC-Cccccc
Confidence 46789999 999999999999999999999999999999999999999 9999999999954555443 555444
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=99.84 E-value=3.6e-21 Score=151.33 Aligned_cols=64 Identities=53% Similarity=0.950 Sum_probs=58.8
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~ 71 (82)
.+.|||||||||+++||+|||+|||||+++|+++||+++.|+| ||+|||||+.. .+.|+++++.
T Consensus 248 ~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~~ 312 (560)
T PRK02106 248 ARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQPV 312 (560)
T ss_pred EEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCCc
Confidence 3445999999999999999999999999999999999999999 99999999998 6888887654
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.83 E-value=7.9e-21 Score=148.44 Aligned_cols=65 Identities=46% Similarity=0.749 Sum_probs=59.1
Q ss_pred EEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101 6 HRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71 (82)
Q Consensus 6 ~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~ 71 (82)
.++.+ |||||||||++||+||++|||||+++|+++||+++.|+| ||+|||||+.+ .+.|+++++.
T Consensus 239 ~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~ 305 (532)
T TIGR01810 239 EHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPV 305 (532)
T ss_pred EEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCc
Confidence 34444 999999999999999999999999999999999999999 99999999998 6888887653
No 4
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.82 E-value=1.2e-21 Score=140.86 Aligned_cols=54 Identities=61% Similarity=1.003 Sum_probs=45.6
Q ss_pred eEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCCCccccccCc
Q psy4101 5 RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHV 58 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlpVG~nl~DH~ 58 (82)
.+.+.||+|||||||++||+|||+|||||.++|+++||+++.|+|||+||||||
T Consensus 242 ~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 242 RRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred eeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 345555999999999999999999999999999999999999999999999997
No 5
>PLN02785 Protein HOTHEAD
Probab=99.81 E-value=1.8e-20 Score=150.10 Aligned_cols=60 Identities=43% Similarity=0.705 Sum_probs=56.4
Q ss_pred e-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101 10 A-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP 70 (82)
Q Consensus 10 A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~ 70 (82)
+ +|||||||+++||+|||+|||||+++|+++|||++.|+| ||+|||||+.. .+.+..+.+
T Consensus 278 ~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~~~~~~ 339 (587)
T PLN02785 278 KGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN-SIFVPSKAP 339 (587)
T ss_pred cCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCccc-ceEEEeCCC
Confidence 5 899999999999999999999999999999999999999 99999999998 688877654
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.56 E-value=1.6e-15 Score=120.49 Aligned_cols=65 Identities=46% Similarity=0.807 Sum_probs=58.7
Q ss_pred EEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101 6 HRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71 (82)
Q Consensus 6 ~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~ 71 (82)
....+ +|||||||+|+||+|||+||||+.+.+..+|++++.++| ||+|||||... .+.+..+.+.
T Consensus 250 ~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~~~~ 316 (542)
T COG2303 250 ETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEATEPT 316 (542)
T ss_pred EEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheeccCcc
Confidence 34444 999999999999999999999999999999999999999 99999999998 6888876654
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.09 E-value=1.9e-10 Score=92.41 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=46.1
Q ss_pred eeEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101 4 LRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP 70 (82)
Q Consensus 4 ~~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~ 70 (82)
..++++|+.||||||+|+||+||++|+++.... .-|+..-...+ ||||||||+.. ...+.++++
T Consensus 262 ~~~~v~A~~vVLAagaIetpRLLL~S~~~~~~~--p~gl~Nss~~g~VGRnlmdh~~~-~~~~~~~~~ 326 (544)
T TIGR02462 262 DRFEIKADVYVLACGAVHNPQILVNSGFGQLGR--PDPTNPPPLLPSLGRYITEQSMT-FCQIVLSTE 326 (544)
T ss_pred cEEEEECCEEEEccCchhhHHHHHhCCCCCCcC--CCCcCCCCCCCCCCcchhcCCCc-cEEEEecch
Confidence 356799999999999999999999999985332 11221100125 99999999987 566666544
No 8
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=75.25 E-value=4.9 Score=32.30 Aligned_cols=26 Identities=27% Similarity=0.147 Sum_probs=22.0
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIGP 33 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig~ 33 (82)
+++|+.||+|||+. |..++..+|++.
T Consensus 259 ~i~A~~VVvaAG~~-S~~La~~~Gi~~ 284 (497)
T PTZ00383 259 EIRARFVVVSACGY-SLLFAQKMGYGL 284 (497)
T ss_pred EEEeCEEEECcChh-HHHHHHHhCCCC
Confidence 57889999999986 778888999864
No 9
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=73.03 E-value=2 Score=28.75 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=14.9
Q ss_pred EEEEecEEEEcCCCcchHHHHHHcC
Q psy4101 6 HRPQASNVILSAGTIGSPQILMISG 30 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP~lL~~SG 30 (82)
.+++|+.||+|.|....|+++..-|
T Consensus 123 ~~~~a~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 123 RTIRADRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp -EEEEEEEEE---SSCSB---S-TT
T ss_pred ceeeeeeEEEeeeccCCCCcccccc
Confidence 4677999999999999999887766
No 10
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=62.29 E-value=11 Score=29.09 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=22.1
Q ss_pred eEEEEecEEEEcCCCcchHHHHHHcCCCC
Q psy4101 5 RHRPQASNVILSAGTIGSPQILMISGIGP 33 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~sP~lL~~SGig~ 33 (82)
...++|+.||+|+|.+.++.-++.+-.++
T Consensus 176 ~~~i~a~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 176 AERIRAKAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred eEEEECCEEEECCCCCCCCHHHHHhhcCC
Confidence 35678899999999998877666654443
No 11
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=60.84 E-value=9.9 Score=26.92 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=18.6
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIG 32 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig 32 (82)
+++|+.||+|+|+ .|++++..++..
T Consensus 189 ~i~ad~vV~a~G~-~s~~l~~~~~~~ 213 (358)
T PF01266_consen 189 EIRADRVVLAAGA-WSPQLLPLLGLD 213 (358)
T ss_dssp EEEECEEEE--GG-GHHHHHHTTTTS
T ss_pred ccccceeEecccc-cceeeeeccccc
Confidence 4788999999997 688888888753
No 12
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=56.33 E-value=15 Score=27.57 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=13.1
Q ss_pred eeEEEEecEEEEcCCCcch
Q psy4101 4 LRHRPQASNVILSAGTIGS 22 (82)
Q Consensus 4 ~~~~v~A~eVILsaGa~~s 22 (82)
..++++|+.||||+|.+..
T Consensus 186 ~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 186 EFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EEEEEEESEEEE----BGG
T ss_pred eEEEEeeeEEEeccCcccc
Confidence 4578999999999999998
No 13
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=39.48 E-value=46 Score=26.90 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=21.0
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIGP 33 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig~ 33 (82)
+++|+.||+|||+- |-.++..+|+.+
T Consensus 233 ~i~Ad~VV~AAGaw-S~~La~~~Gi~~ 258 (497)
T PRK13339 233 EQVADYVFIGAGGG-AIPLLQKSGIPE 258 (497)
T ss_pred EEEcCEEEECCCcc-hHHHHHHcCCCc
Confidence 57889999999984 577888888754
No 14
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=39.16 E-value=28 Score=27.74 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=18.8
Q ss_pred EEEEecEEEEcCCCcchHHHHHHc
Q psy4101 6 HRPQASNVILSAGTIGSPQILMIS 29 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP~lL~~S 29 (82)
..+.|+.||||+|++-|..|+...
T Consensus 307 ~~l~AD~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 307 IPLRADHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred ceEECCEEEEccCCCcCHHHHhhc
Confidence 367888899999999777775543
No 15
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=36.67 E-value=29 Score=28.21 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=17.3
Q ss_pred eEEEEe-cEEEEcCCCcch-HHHHH
Q psy4101 5 RHRPQA-SNVILSAGTIGS-PQILM 27 (82)
Q Consensus 5 ~~~v~A-~eVILsaGa~~s-P~lL~ 27 (82)
.+.++| +.||||+|.+.. |.++.
T Consensus 258 ~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 258 TLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred EEEEEeceeEEEecCcccCCHHHHH
Confidence 467899 589999998875 54443
No 16
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=36.13 E-value=33 Score=27.44 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=16.4
Q ss_pred eEEEEecEEEEcCCCcch-HHHH
Q psy4101 5 RHRPQASNVILSAGTIGS-PQIL 26 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s-P~lL 26 (82)
..+++||-||||+|.+.. +.++
T Consensus 211 ~~~i~AkaVILATGGf~~n~em~ 233 (549)
T PRK12834 211 EFELRAQAVIVTSGGIGGNHELV 233 (549)
T ss_pred eEEEecCEEEEeCCCcccCHHHH
Confidence 357888999999998874 4343
No 17
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=36.07 E-value=58 Score=25.93 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=20.8
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIGP 33 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig~ 33 (82)
+++|+.||+|||+. +..++...|+.+
T Consensus 226 ~i~A~~VV~AAG~~-s~~La~~~Gi~~ 251 (483)
T TIGR01320 226 TLNTRFVFVGAGGG-ALPLLQKSGIPE 251 (483)
T ss_pred EEECCEEEECCCcc-hHHHHHHcCCCc
Confidence 57889999999985 566788888763
No 18
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=35.73 E-value=40 Score=26.78 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.3
Q ss_pred eEEEEe-cEEEEcCCCcc-hHHHHH
Q psy4101 5 RHRPQA-SNVILSAGTIG-SPQILM 27 (82)
Q Consensus 5 ~~~v~A-~eVILsaGa~~-sP~lL~ 27 (82)
.++++| |.||||+|.++ .+.++.
T Consensus 218 ~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 218 RRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred EEEEEeCceEEEeCCCccCCHHHHH
Confidence 467899 69999999985 444444
No 19
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=35.48 E-value=80 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=24.5
Q ss_pred eeEEEEecEEEEcCCCcchHHHHHHcCCCCCC
Q psy4101 4 LRHRPQASNVILSAGTIGSPQILMISGIGPKD 35 (82)
Q Consensus 4 ~~~~v~A~eVILsaGa~~sP~lL~~SGig~~~ 35 (82)
....++|+-|++.||+- +=.||+.|||....
T Consensus 227 ~~~~v~a~FVfvGAGG~-aL~LLqksgi~e~~ 257 (488)
T PF06039_consen 227 EKREVRAKFVFVGAGGG-ALPLLQKSGIPEGK 257 (488)
T ss_pred CeEEEECCEEEECCchH-hHHHHHHcCChhhc
Confidence 45789999999999985 55689999995433
No 20
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=34.96 E-value=41 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.7
Q ss_pred eEEEEe-cEEEEcCCCcchHH
Q psy4101 5 RHRPQA-SNVILSAGTIGSPQ 24 (82)
Q Consensus 5 ~~~v~A-~eVILsaGa~~sP~ 24 (82)
...++| +.||||+|.+.+-+
T Consensus 252 ~~~i~A~~~VIlAtGG~~~n~ 272 (557)
T PRK07843 252 PQLIRARRGVILASGGFEHNE 272 (557)
T ss_pred EEEEEeceeEEEccCCcCcCH
Confidence 467889 57999999888733
No 21
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=34.60 E-value=54 Score=26.25 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=20.3
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIG 32 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig 32 (82)
+++|+.||+|||+. +..++..+|+.
T Consensus 232 ~i~A~~VVvaAGg~-s~~L~~~~Gi~ 256 (494)
T PRK05257 232 TVRAKFVFIGAGGG-ALPLLQKSGIP 256 (494)
T ss_pred EEEcCEEEECCCcc-hHHHHHHcCCC
Confidence 57889999999985 56678888875
No 22
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=33.35 E-value=87 Score=25.15 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.4
Q ss_pred EEecEEEEcCCCcchHHHHHHcCCCCC
Q psy4101 8 PQASNVILSAGTIGSPQILMISGIGPK 34 (82)
Q Consensus 8 v~A~eVILsaGa~~sP~lL~~SGig~~ 34 (82)
++||.||.|||. .+-.|+..+|+.+.
T Consensus 198 ~~ak~Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 198 LEAKFVINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred EEeeEEEECCch-hHHHHHHHhCCCcc
Confidence 889999999996 57779999998874
No 23
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=31.18 E-value=49 Score=26.72 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.0
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
...++||.||||+|.+..
T Consensus 165 ~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 165 IHRFRAKAVVLATGGYGR 182 (565)
T ss_pred EEEEEeCeEEECCCCccc
Confidence 357888999999998864
No 24
>PRK07121 hypothetical protein; Validated
Probab=31.08 E-value=60 Score=25.38 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.2
Q ss_pred eEEEEe-cEEEEcCCCcch
Q psy4101 5 RHRPQA-SNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A-~eVILsaGa~~s 22 (82)
.+.++| +.||||+|.+..
T Consensus 222 ~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 222 TVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred EEEEEeCCEEEECCCCcCc
Confidence 457899 999999998764
No 25
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.86 E-value=52 Score=26.60 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.6
Q ss_pred eEEEEecEEEEcCCCcc
Q psy4101 5 RHRPQASNVILSAGTIG 21 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~ 21 (82)
.+.++||.||||+|.+.
T Consensus 182 ~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 182 PFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEEEEeCeEEECCCccc
Confidence 45788899999999887
No 26
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=29.81 E-value=76 Score=25.03 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEecEEEEcCCCcchHHHHHHcCC
Q psy4101 6 HRPQASNVILSAGTIGSPQILMISGI 31 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP~lL~~SGi 31 (82)
.+++|+.||.|+|+. +..++...|+
T Consensus 175 ~~i~a~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 175 ERIEAQVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred EEEEcCEEEECCCcc-hHHHHHhcCC
Confidence 468889999999976 6677766665
No 27
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=29.52 E-value=90 Score=23.39 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=20.6
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIGP 33 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig~ 33 (82)
+++|+.||+|+|+ .|+.++...|+.+
T Consensus 190 ~i~ad~vV~A~G~-~s~~l~~~~g~~~ 215 (393)
T PRK11728 190 EYEARTLINCAGL-MSDRLAKMAGLEP 215 (393)
T ss_pred EEEeCEEEECCCc-chHHHHHHhCCCC
Confidence 4778999999997 5788888777653
No 28
>PRK06175 L-aspartate oxidase; Provisional
Probab=28.39 E-value=47 Score=25.82 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.0
Q ss_pred EEEEecEEEEcCCCcch
Q psy4101 6 HRPQASNVILSAGTIGS 22 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~s 22 (82)
+.++|+.||||+|.+..
T Consensus 174 ~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 174 INIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEcCeEEEccCcccc
Confidence 46888999999998753
No 29
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.26 E-value=56 Score=26.49 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=15.1
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++||.||||+|.+..
T Consensus 173 ~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 173 TVYIKSKATVLATGGAGR 190 (570)
T ss_pred EEEEecCeEEECCCCccc
Confidence 357888999999998874
No 30
>PLN02815 L-aspartate oxidase
Probab=26.87 E-value=65 Score=26.51 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.2
Q ss_pred eEEEEecEEEEcCCCcc
Q psy4101 5 RHRPQASNVILSAGTIG 21 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~ 21 (82)
.+.++||.||||+|.+.
T Consensus 206 ~~~i~AkaVILATGG~g 222 (594)
T PLN02815 206 VVRFISKVTLLASGGAG 222 (594)
T ss_pred EEEEEeceEEEcCCcce
Confidence 35678899999999876
No 31
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.53 E-value=64 Score=26.32 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.1
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.+.||.||||+|.+..
T Consensus 196 ~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 196 LHRFRAHMVVLATGGYGR 213 (598)
T ss_pred EEEEEcCEEEECCCCCcc
Confidence 457888999999999875
No 32
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=24.60 E-value=74 Score=24.24 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.0
Q ss_pred EEEecEEEEcCCCcch
Q psy4101 7 RPQASNVILSAGTIGS 22 (82)
Q Consensus 7 ~v~A~eVILsaGa~~s 22 (82)
.++|+.||+|+|.+..
T Consensus 178 ~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 178 IKAAKAVVLATGGFGS 193 (439)
T ss_pred EEecceEEEecCCCCC
Confidence 4566999999998765
No 33
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=24.59 E-value=56 Score=24.16 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred cccCCCCeeeeCCCccccccCcCCceeEEEecCC
Q psy4101 37 LQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP 70 (82)
Q Consensus 37 l~~~gI~~~~dlpVG~nl~DH~~~~~~~~~~~~~ 70 (82)
|+++||.-+.-.+++.+|.||+....-..+.+++
T Consensus 47 L~~~gl~~V~Ve~~~G~LtDHYdP~~k~vrLS~~ 80 (222)
T PF04298_consen 47 LDRNGLSDVRVERVPGELTDHYDPRNKVVRLSED 80 (222)
T ss_pred HHHCCCCCeeEEEeCCCCCCCcCCCCCEEEeCCc
Confidence 3345554333334888999999986555555544
No 34
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.57 E-value=84 Score=25.36 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.1
Q ss_pred eEEEEe-cEEEEcCCCcch
Q psy4101 5 RHRPQA-SNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A-~eVILsaGa~~s 22 (82)
.+.++| +.||||+|.+..
T Consensus 252 ~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 252 EVLIRARRGVLLASGGFGH 270 (557)
T ss_pred EEEEEecceEEEecCCccC
Confidence 467889 789999998876
No 35
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.16 E-value=71 Score=25.51 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.8
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++||.||||+|.+..
T Consensus 181 ~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 181 IFPIYAKATILATGGAGQ 198 (543)
T ss_pred EEEEEcCcEEECCCCCCC
Confidence 356888999999998864
No 36
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.01 E-value=85 Score=25.55 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=15.9
Q ss_pred eEEEEe-cEEEEcCCCcchHH
Q psy4101 5 RHRPQA-SNVILSAGTIGSPQ 24 (82)
Q Consensus 5 ~~~v~A-~eVILsaGa~~sP~ 24 (82)
.+.++| |-||||+|.+..-.
T Consensus 261 ~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 261 EVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred EEEEEcCCEEEEecCCccccH
Confidence 467888 89999999888543
No 37
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=23.76 E-value=92 Score=24.69 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=15.1
Q ss_pred eEEEEecEEEEcCCCcchH
Q psy4101 5 RHRPQASNVILSAGTIGSP 23 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~sP 23 (82)
..+++|+.||+|+|.+...
T Consensus 235 ~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 235 TKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred EEEEecCeEEEeCCCcccC
Confidence 3568889999999977654
No 38
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=23.45 E-value=99 Score=25.06 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=16.4
Q ss_pred EEEEe-cEEEEcCCCcchHHHH
Q psy4101 6 HRPQA-SNVILSAGTIGSPQIL 26 (82)
Q Consensus 6 ~~v~A-~eVILsaGa~~sP~lL 26 (82)
++++| +.||||+|++..-.-+
T Consensus 262 ~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 262 QEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred EEEEeCCEEEEcCCCcccCHHH
Confidence 56889 9999999998764333
No 39
>PRK07395 L-aspartate oxidase; Provisional
Probab=23.27 E-value=83 Score=25.50 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=13.2
Q ss_pred EEEEecEEEEcCCCcc
Q psy4101 6 HRPQASNVILSAGTIG 21 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~ 21 (82)
+.++||.||||+|.+.
T Consensus 182 ~~i~AkaVILATGG~~ 197 (553)
T PRK07395 182 TWLRAGAVILATGGGG 197 (553)
T ss_pred EEEEcCEEEEcCCCCc
Confidence 4577899999999864
No 40
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=22.84 E-value=64 Score=23.67 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=12.1
Q ss_pred EEEecEEEEcCCCcc
Q psy4101 7 RPQASNVILSAGTIG 21 (82)
Q Consensus 7 ~v~A~eVILsaGa~~ 21 (82)
.++|+.||+|+|+..
T Consensus 183 ~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 183 DVHADQVFVCPGADF 197 (365)
T ss_pred cEEeCEEEECCCCCh
Confidence 357899999999853
No 41
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.80 E-value=82 Score=26.05 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.5
Q ss_pred EEEEecEEEEcCCCcch
Q psy4101 6 HRPQASNVILSAGTIGS 22 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~s 22 (82)
+.++|+.||||+|.+..
T Consensus 217 ~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 217 ERHTADAVVLATGGYGN 233 (640)
T ss_pred EEEECCEEEECCCCccc
Confidence 56788999999998875
No 42
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=22.58 E-value=1.1e+02 Score=24.75 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=15.5
Q ss_pred eEEEEe-cEEEEcCCCcchH
Q psy4101 5 RHRPQA-SNVILSAGTIGSP 23 (82)
Q Consensus 5 ~~~v~A-~eVILsaGa~~sP 23 (82)
.+.++| +.||||+|.+..-
T Consensus 265 ~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 265 RRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred EEEEEccceEEECCCCcccC
Confidence 457888 8999999988773
No 43
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.58 E-value=77 Score=25.85 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.9
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++||.||||+|.+..
T Consensus 190 ~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 190 VVYFKARATVLATGGAGR 207 (588)
T ss_pred EEEEEcCeEEECCCCccc
Confidence 356788999999998864
No 44
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.43 E-value=86 Score=25.53 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.6
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++|+.||||+|.+..
T Consensus 184 ~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 184 IESFPADAVIMATGGPGI 201 (589)
T ss_pred EEEEECCEEEECCCCCcC
Confidence 356778999999998774
No 45
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=22.29 E-value=88 Score=25.93 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.1
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++||.||||+|.+..
T Consensus 234 ~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 234 LHRFRAHSTILATGGYGR 251 (635)
T ss_pred EEEEEcCeEEECCCCCcc
Confidence 467788999999999874
No 46
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=22.12 E-value=65 Score=22.93 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=12.4
Q ss_pred EEEecEEEEcCCCcc
Q psy4101 7 RPQASNVILSAGTIG 21 (82)
Q Consensus 7 ~v~A~eVILsaGa~~ 21 (82)
+++|+.||+|+|+.-
T Consensus 179 ~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 179 DVQADQVVLAAGAWA 193 (337)
T ss_pred EEECCEEEEcCChhh
Confidence 577899999999753
No 47
>PRK07512 L-aspartate oxidase; Provisional
Probab=21.84 E-value=83 Score=25.09 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=13.6
Q ss_pred EEEEecEEEEcCCCcc
Q psy4101 6 HRPQASNVILSAGTIG 21 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~ 21 (82)
..++|+.||||+|.+.
T Consensus 182 ~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 182 VVLPARAVVLATGGIG 197 (513)
T ss_pred EEEECCEEEEcCCCCc
Confidence 4678899999999975
No 48
>PRK08071 L-aspartate oxidase; Provisional
Probab=21.48 E-value=89 Score=24.88 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=14.2
Q ss_pred EEEEecEEEEcCCCcch
Q psy4101 6 HRPQASNVILSAGTIGS 22 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~s 22 (82)
+.++|+.||||+|.+..
T Consensus 175 ~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 175 KRYYADYVVLASGGCGG 191 (510)
T ss_pred EEEEcCeEEEecCCCcc
Confidence 46788999999998764
No 49
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=21.26 E-value=83 Score=28.01 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.4
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++||.||||+|.+..
T Consensus 604 ~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 604 VMDLLADAVILATGGFSN 621 (1167)
T ss_pred EEEEEeceEEEecCCccc
Confidence 467888999999999886
No 50
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=21.24 E-value=1.2e+02 Score=23.20 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=15.9
Q ss_pred EEEEecEEEEcCCCcchHHHH
Q psy4101 6 HRPQASNVILSAGTIGSPQIL 26 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP~lL 26 (82)
.+++||.||||+|.+....=+
T Consensus 168 ~~i~ak~VIlAtGG~~~n~~~ 188 (432)
T TIGR02485 168 HRITTQALVLAAGGLGANRDW 188 (432)
T ss_pred EEEEcCEEEEcCCCcccCHHH
Confidence 467789999999988764433
No 51
>KOG0404|consensus
Probab=21.18 E-value=36 Score=26.23 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=25.6
Q ss_pred EEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCC
Q psy4101 6 HRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIP 43 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~ 43 (82)
..++|+.||+|.|| |++-|.+-|-|..+ .|..||.
T Consensus 109 ~~v~~~avI~atGA--sAkRl~~pg~ge~~-fWqrGiS 143 (322)
T KOG0404|consen 109 RPVTADAVILATGA--SAKRLHLPGEGEGE-FWQRGIS 143 (322)
T ss_pred CceeeeeEEEeccc--ceeeeecCCCCcch-HHhcccc
Confidence 45778999999997 56777776766543 6777773
No 52
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=21.12 E-value=87 Score=25.75 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=14.7
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++||.||||+|.+..
T Consensus 213 ~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 213 IHRFRAHYTVIATGGYGR 230 (617)
T ss_pred EEEEECCcEEEeCCCCcc
Confidence 357788999999998864
No 53
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.05 E-value=94 Score=25.55 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=14.4
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++|+.||||+|.+..
T Consensus 197 ~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 197 FVLFEAPAVVLATGGIGK 214 (626)
T ss_pred EEEEEcCeEEECCCcccC
Confidence 356788999999998653
No 54
>PRK12839 hypothetical protein; Provisional
Probab=20.51 E-value=88 Score=25.45 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.1
Q ss_pred EEEEe-cEEEEcCCCcch
Q psy4101 6 HRPQA-SNVILSAGTIGS 22 (82)
Q Consensus 6 ~~v~A-~eVILsaGa~~s 22 (82)
.++.+ |.||||+|.+..
T Consensus 260 ~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 260 VTVEATRGVVLATGGFPN 277 (572)
T ss_pred EEEEeCCEEEEcCCCccc
Confidence 45667 999999999886
No 55
>PRK09077 L-aspartate oxidase; Provisional
Probab=20.48 E-value=1e+02 Score=24.72 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.7
Q ss_pred eEEEEecEEEEcCCCcch
Q psy4101 5 RHRPQASNVILSAGTIGS 22 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s 22 (82)
.+.++|+.||||+|.+..
T Consensus 191 ~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 191 VETIRAKFVVLATGGASK 208 (536)
T ss_pred EEEEecCeEEECCCCCCC
Confidence 456788999999998763
Done!