Query psy4101
Match_columns 82
No_of_seqs 159 out of 1025
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:01:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qvp_A Glucose oxidase; oxidor 99.9 4.1E-24 1.4E-28 169.0 5.0 66 4-70 275-341 (583)
2 3fim_B ARYL-alcohol oxidase; A 99.9 2.3E-24 7.7E-29 169.6 2.8 68 4-72 258-327 (566)
3 3q9t_A Choline dehydrogenase a 99.9 3.8E-23 1.3E-27 163.0 2.9 67 4-71 252-320 (577)
4 1gpe_A Protein (glucose oxidas 99.8 1.3E-20 4.3E-25 147.8 4.5 66 4-70 279-345 (587)
5 3t37_A Probable dehydrogenase; 99.8 3E-20 1E-24 140.5 3.0 68 4-71 254-322 (526)
6 2jbv_A Choline oxidase; alcoho 99.7 4.6E-19 1.6E-23 137.6 3.3 65 5-70 256-322 (546)
7 1ju2_A HydroxynitrIle lyase; f 99.7 5E-19 1.7E-23 137.1 1.9 60 10-70 249-310 (536)
8 1kdg_A CDH, cellobiose dehydro 99.6 6.1E-17 2.1E-21 124.4 0.8 60 6-66 245-316 (546)
9 3pl8_A Pyranose 2-oxidase; sub 99.5 5.9E-15 2E-19 116.7 5.6 63 5-70 308-371 (623)
10 1n4w_A CHOD, cholesterol oxida 99.3 2.1E-12 7.2E-17 98.9 3.8 53 4-66 271-324 (504)
11 1coy_A Cholesterol oxidase; ox 99.0 2E-10 7E-15 88.1 3.0 46 5-60 277-324 (507)
12 4at0_A 3-ketosteroid-delta4-5a 67.0 5.9 0.0002 29.7 3.9 25 4-28 246-272 (510)
13 3dme_A Conserved exported prot 66.4 4.7 0.00016 27.6 3.0 26 6-32 194-220 (369)
14 3nyc_A D-arginine dehydrogenas 51.4 12 0.00042 25.7 3.1 25 7-32 195-219 (381)
15 3da1_A Glycerol-3-phosphate de 45.6 21 0.0007 27.4 3.8 27 5-32 216-242 (561)
16 1y56_B Sarcosine oxidase; dehy 42.6 19 0.00066 25.0 3.0 25 7-32 191-215 (382)
17 3axb_A Putative oxidoreductase 40.3 16 0.00054 26.3 2.3 22 9-31 242-263 (448)
18 2rgh_A Alpha-glycerophosphate 39.4 16 0.00054 28.1 2.3 25 6-31 235-259 (571)
19 3dje_A Fructosyl amine: oxygen 38.6 11 0.00037 27.0 1.2 20 7-27 207-226 (438)
20 3sqn_A Conserved domain protei 37.7 16 0.00054 27.9 2.0 19 11-29 400-418 (485)
21 2oln_A NIKD protein; flavoprot 34.9 26 0.0009 24.5 2.7 23 7-30 194-216 (397)
22 1ryi_A Glycine oxidase; flavop 33.2 43 0.0015 23.1 3.6 24 7-31 205-228 (382)
23 3c4n_A Uncharacterized protein 31.7 35 0.0012 24.4 3.0 25 7-32 222-247 (405)
24 2gag_B Heterotetrameric sarcos 31.0 31 0.0011 24.0 2.5 25 7-32 216-240 (405)
25 1d4d_A Flavocytochrome C fumar 30.5 50 0.0017 25.2 3.8 23 6-28 302-325 (572)
26 1qo8_A Flavocytochrome C3 fuma 29.3 44 0.0015 25.3 3.3 18 6-23 297-314 (566)
27 3ka7_A Oxidoreductase; structu 26.9 32 0.0011 24.2 2.0 21 7-27 238-258 (425)
28 2i0z_A NAD(FAD)-utilizing dehy 26.3 49 0.0017 24.1 3.0 17 7-23 177-193 (447)
29 2qcu_A Aerobic glycerol-3-phos 24.4 47 0.0016 24.6 2.6 21 6-27 195-215 (501)
30 1y0p_A Fumarate reductase flav 24.2 67 0.0023 24.2 3.5 22 5-26 301-323 (571)
31 3nrn_A Uncharacterized protein 23.9 44 0.0015 23.7 2.3 21 7-27 229-249 (421)
32 2wdq_A Succinate dehydrogenase 23.1 55 0.0019 25.2 2.8 17 6-22 191-207 (588)
33 2gf3_A MSOX, monomeric sarcosi 23.0 44 0.0015 23.0 2.1 23 7-30 191-213 (389)
34 1pj5_A N,N-dimethylglycine oxi 22.3 60 0.0021 25.8 3.0 24 7-31 193-216 (830)
35 1chu_A Protein (L-aspartate ox 22.1 66 0.0023 24.4 3.1 17 6-22 193-209 (540)
36 2h88_A Succinate dehydrogenase 21.9 59 0.002 25.5 2.8 17 6-22 202-218 (621)
37 3gyx_A Adenylylsulfate reducta 21.7 57 0.002 25.8 2.7 17 5-21 217-233 (662)
38 2ywl_A Thioredoxin reductase r 21.6 74 0.0025 19.5 2.8 23 7-31 96-118 (180)
39 3ps9_A TRNA 5-methylaminomethy 20.9 26 0.00089 27.1 0.6 22 7-29 459-480 (676)
40 2bs2_A Quinol-fumarate reducta 20.4 68 0.0023 25.3 2.9 17 6-22 205-221 (660)
No 1
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=99.89 E-value=4.1e-24 Score=168.97 Aligned_cols=66 Identities=39% Similarity=0.507 Sum_probs=61.6
Q ss_pred eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCCCccccccCcCCceeEEEecCC
Q psy4101 4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP 70 (82)
Q Consensus 4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlpVG~nl~DH~~~~~~~~~~~~~ 70 (82)
+.++++| ||||||||+|+||||||+|||||+++|+++||+++.|+|||+|||||+.+ .+.|+++.+
T Consensus 275 ~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLPVG~NLqDH~~~-~~~~~~~~~ 341 (583)
T 3qvp_A 275 NTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTA-TVRSRITSA 341 (583)
T ss_dssp CEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCTTCCBBCCEEE-EEEEEECGG
T ss_pred cEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCceeeCccccchhhCccc-eEEEEecCC
Confidence 4578999 89999999999999999999999999999999999999999999999998 688988653
No 2
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=99.89 E-value=2.3e-24 Score=169.64 Aligned_cols=68 Identities=37% Similarity=0.609 Sum_probs=63.2
Q ss_pred eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCcc
Q psy4101 4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPVS 72 (82)
Q Consensus 4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~~ 72 (82)
+.++++| ||||||||+|+||+|||+|||||+++|+++||++++|+| ||+|||||+.+ .+.|+.+.+.+
T Consensus 258 ~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH~~~-~~~~~~~~~~~ 327 (566)
T 3fim_B 258 PTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLL-PAAFFVNSNQT 327 (566)
T ss_dssp CCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEE-CCEEEESCSCS
T ss_pred eEEEEEeeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcCccc-eEEEEeCCCcc
Confidence 5688999 999999999999999999999999999999999999999 99999999998 68888876543
No 3
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=99.86 E-value=3.8e-23 Score=162.99 Aligned_cols=67 Identities=42% Similarity=0.617 Sum_probs=62.5
Q ss_pred eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101 4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71 (82)
Q Consensus 4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~ 71 (82)
+.++++| ||||||||+|+||+|||+|||||+++|+++||+++.|+| ||+|||||+.+ .+.|+++++.
T Consensus 252 ~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~DH~~~-~~~~~~~~~~ 320 (577)
T 3q9t_A 252 NELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGV-PFVLRVKDGF 320 (577)
T ss_dssp CEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBCCEEE-EEEEEECTTS
T ss_pred cEEEEEeeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhhhhhhcCcce-eEEEEeCCCC
Confidence 4578999 999999999999999999999999999999999999999 99999999998 6889987654
No 4
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=99.80 E-value=1.3e-20 Score=147.84 Aligned_cols=66 Identities=33% Similarity=0.420 Sum_probs=61.6
Q ss_pred eeEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCCCccccccCcCCceeEEEecCC
Q psy4101 4 LRHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKP 70 (82)
Q Consensus 4 ~~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlpVG~nl~DH~~~~~~~~~~~~~ 70 (82)
+.++++| |+||||||+++||+||++|||||+++|+++||+++.|+|||+|||||+.. .+.+.++++
T Consensus 279 ~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlPVG~nL~DH~~~-~~~~~~~~~ 345 (587)
T 1gpe_A 279 VNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTT-TVSSRASSA 345 (587)
T ss_dssp EEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCSBBCCEEE-EEEEEECGG
T ss_pred cEEEEEecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeCCCCcchhcCccc-ceEEEeCCC
Confidence 4578999 99999999999999999999999999999999999999999999999998 688888654
No 5
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=99.78 E-value=3e-20 Score=140.46 Aligned_cols=68 Identities=41% Similarity=0.643 Sum_probs=59.5
Q ss_pred eeEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCCc
Q psy4101 4 LRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71 (82)
Q Consensus 4 ~~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~~ 71 (82)
....++|||||||||+|+||+|||+|||||+++|+++||+++.|+| ||+|||||+......+..+++.
T Consensus 254 ~~~~~~a~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~~~ 322 (526)
T 3t37_A 254 GSAEVFADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPV 322 (526)
T ss_dssp EEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEEEEEEESSCC
T ss_pred ceEEEeecceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccccccccccccceeEEeccCCc
Confidence 3467778999999999999999999999999999999999999999 9999999997644555555543
No 6
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=99.74 E-value=4.6e-19 Score=137.62 Aligned_cols=65 Identities=46% Similarity=0.782 Sum_probs=60.4
Q ss_pred eEEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101 5 RHRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP 70 (82)
Q Consensus 5 ~~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~ 70 (82)
.++++| |+||||||+++||+||++|||||+++|+++||+++.|+| ||+|||||+.+ .+.|.++++
T Consensus 256 ~~~i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~-~~~~~~~~~ 322 (546)
T 2jbv_A 256 THRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEG-VVQFEAKQP 322 (546)
T ss_dssp EEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEC-CEEEEESSC
T ss_pred EEEEEeCccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhCccc-eEEEEecCC
Confidence 468899 699999999999999999999999999999999999999 99999999998 588887654
No 7
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=99.73 E-value=5e-19 Score=137.15 Aligned_cols=60 Identities=42% Similarity=0.725 Sum_probs=55.9
Q ss_pred e-cEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101 10 A-SNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP 70 (82)
Q Consensus 10 A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~ 70 (82)
| |+||||||+++||+||++|||||+++|+++||+++.|+| ||+|||||+.. .+.+.++++
T Consensus 249 a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~-~~~~~~~~~ 310 (536)
T 1ju2_A 249 SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRN-FINILPPNP 310 (536)
T ss_dssp EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEE-EEEECCSSC
T ss_pred cCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCcce-eEEEEeCCC
Confidence 6 999999999999999999999999999999999999999 99999999987 677777654
No 8
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=99.61 E-value=6.1e-17 Score=124.37 Aligned_cols=60 Identities=40% Similarity=0.597 Sum_probs=53.9
Q ss_pred EEEEe-cEEEEcCCCcchHHHHHHcCCCCCCccccC------CCCee-----eeCCCccccccCcCCceeEEE
Q psy4101 6 HRPQA-SNVILSAGTIGSPQILMISGIGPKDHLQDM------GIPVI-----HDLRVGDNLQDHVGMAGLTFL 66 (82)
Q Consensus 6 ~~v~A-~eVILsaGa~~sP~lL~~SGig~~~~l~~~------gI~~~-----~dlpVG~nl~DH~~~~~~~~~ 66 (82)
.++++ ++||||||+++||++|++|||||+++|+++ ||+++ .|+|||+|||||+.+ .+.|.
T Consensus 245 ~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlpVG~nL~DH~~~-~~~~~ 316 (546)
T 1kdg_A 245 IPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI-NLVFT 316 (546)
T ss_dssp EEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTBBCCCCE-EEEEE
T ss_pred EEEEeCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccccccCCcccCcccCcce-eEEEe
Confidence 35655 999999999999999999999999999999 59885 899999999999988 57776
No 9
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=99.53 E-value=5.9e-15 Score=116.66 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=58.2
Q ss_pred eEEEEecEEEEcCCCcchHHHHHHcCCCCCCccccCCCCeeeeCC-CccccccCcCCceeEEEecCC
Q psy4101 5 RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKP 70 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~sP~lL~~SGig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~~~~~~~~~~~ 70 (82)
.++++|++||+|+|++.||++|++|||||+.+++.+||++ |+| ||+|||||+.. .+.|.++++
T Consensus 308 ~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~--~l~~vG~nl~dh~~~-~~~~~~~~~ 371 (623)
T 3pl8_A 308 RFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE--LLPSLGSYITEQSLV-FCQTVMSTE 371 (623)
T ss_dssp EEEECEEEEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS--SCTTTTBSCBCCCEE-EEEEEECHH
T ss_pred EEEEECCEEEEcCCCcCCHHHHHhcCCCccccccccCCCC--CCcccccchhhCcCc-eEEEEECCc
Confidence 4578889999999999999999999999999999999999 999 99999999998 688888654
No 10
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=99.27 E-value=2.1e-12 Score=98.92 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=43.5
Q ss_pred eeEEEEecEEEEcCCCcchHHHHHHcC-CCCCCccccCCCCeeeeCCCccccccCcCCceeEEE
Q psy4101 4 LRHRPQASNVILSAGTIGSPQILMISG-IGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFL 66 (82)
Q Consensus 4 ~~~~v~A~eVILsaGa~~sP~lL~~SG-ig~~~~l~~~gI~~~~dlpVG~nl~DH~~~~~~~~~ 66 (82)
+.++++|++||||||+++||++|++|| || ||+++.| .||+|||||+.. .+.+.
T Consensus 271 ~~~~v~A~~VIlaaG~~~s~~lL~~Sg~ig--------~i~~~~~-~VG~nl~dh~~~-~~~~~ 324 (504)
T 1n4w_A 271 ATKEISCRYLFLGAGSLGSTELLVRARDTG--------TLPNLNS-EVGAGWGPNGNI-MTARA 324 (504)
T ss_dssp EEEEEEEEEEEECSHHHHHHHHHHHHHHTT--------SSTTCCT-TTTCCBBCTTCE-EEEEE
T ss_pred eeEEEeeCEEEEccCCCCCHHHHHhccccC--------CCCCCCh-hhccccccCCcc-eeeec
Confidence 356788999999999999999999999 98 6776532 399999999977 34443
No 11
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=98.97 E-value=2e-10 Score=88.09 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=38.6
Q ss_pred eEEEEecEEEEcCCCcchHHHHHHcC-CCCCCccccCCCCeeeeCC-CccccccCcCC
Q psy4101 5 RHRPQASNVILSAGTIGSPQILMISG-IGPKDHLQDMGIPVIHDLR-VGDNLQDHVGM 60 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~sP~lL~~SG-ig~~~~l~~~gI~~~~dlp-VG~nl~DH~~~ 60 (82)
.++++|++||||||+++||++|++|| ||. +| ...+ ||+||+||+..
T Consensus 277 ~~~~~A~~VIlaaGa~~sp~lL~~Sg~iG~--------lp--nl~d~VG~~l~~h~~~ 324 (507)
T 1coy_A 277 TKVVTADRVFFAAGSVGTSKLLVSMKAQGH--------LP--NLSSQVGEGWGNNGNI 324 (507)
T ss_dssp EEEEEEEEEEECSHHHHHHHHHHHHHHTTS--------ST--TSCTTTTCCBBCTTEE
T ss_pred cEEEEeCEEEEccCccCCHHHHHhcccCCC--------CC--ccChhhCCccccCCcc
Confidence 57888999999999999999999999 982 33 1234 99999999864
No 12
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=67.02 E-value=5.9 Score=29.68 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=19.0
Q ss_pred eeEEEEe-cEEEEcCCCcc-hHHHHHH
Q psy4101 4 LRHRPQA-SNVILSAGTIG-SPQILMI 28 (82)
Q Consensus 4 ~~~~v~A-~eVILsaGa~~-sP~lL~~ 28 (82)
..++++| |.||||+|.+. +|.++..
T Consensus 246 ~~~~i~A~k~VVlAtGG~~~n~~m~~~ 272 (510)
T 4at0_A 246 KEVAVRARRGVVLATGSFAYNDKMIEA 272 (510)
T ss_dssp EEEEEEEEEEEEECCCCCTTCHHHHHH
T ss_pred cEEEEEeCCeEEEeCCChhhCHHHHHH
Confidence 3457999 69999999997 5665544
No 13
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=66.43 E-value=4.7 Score=27.62 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=21.5
Q ss_pred EEEEecEEEEcCCCcchHHHHHHc-CCC
Q psy4101 6 HRPQASNVILSAGTIGSPQILMIS-GIG 32 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP~lL~~S-Gig 32 (82)
.+++|+.||+|+|+. |+.++... |+.
T Consensus 194 ~~~~a~~VV~A~G~~-s~~l~~~~~g~~ 220 (369)
T 3dme_A 194 MTLSCRVLINAAGLH-APGLARRIEGIP 220 (369)
T ss_dssp EEEEEEEEEECCGGG-HHHHHHTEETSC
T ss_pred eEEEeCEEEECCCcc-hHHHHHHhcCCC
Confidence 478889999999986 88888877 764
No 14
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=51.36 E-value=12 Score=25.73 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=19.7
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIG 32 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig 32 (82)
+++|+.||+|+|+. |+.++...|+.
T Consensus 195 ~i~a~~VV~A~G~~-s~~l~~~~g~~ 219 (381)
T 3nyc_A 195 SYRAAVLVNAAGAW-CDAIAGLAGVR 219 (381)
T ss_dssp EEEESEEEECCGGG-HHHHHHHHTCC
T ss_pred EEEcCEEEECCChh-HHHHHHHhCCC
Confidence 57889999999985 67777776764
No 15
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=45.65 E-value=21 Score=27.36 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=21.8
Q ss_pred eEEEEecEEEEcCCCcchHHHHHHcCCC
Q psy4101 5 RHRPQASNVILSAGTIGSPQILMISGIG 32 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~sP~lL~~SGig 32 (82)
..+++|+.||+|+|+. |+.++...|+.
T Consensus 216 ~~~i~A~~VV~AaG~~-s~~l~~~~g~~ 242 (561)
T 3da1_A 216 THTIYAKKVVNAAGPW-VDTLREKDRSK 242 (561)
T ss_dssp EEEEEEEEEEECCGGG-HHHHHHTTTCC
T ss_pred eEEEECCEEEECCCcc-hHHHHHhcCCC
Confidence 3578899999999975 77888877765
No 16
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=42.64 E-value=19 Score=25.00 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.2
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIG 32 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig 32 (82)
+++|+.||+|+|+. |+.++...|+.
T Consensus 191 ~i~a~~VV~A~G~~-s~~l~~~~g~~ 215 (382)
T 1y56_B 191 IIKTGIVVNATNAW-ANLINAMAGIK 215 (382)
T ss_dssp EEECSEEEECCGGG-HHHHHHHHTCC
T ss_pred EEECCEEEECcchh-HHHHHHHcCCC
Confidence 57889999999986 66677666654
No 17
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=40.26 E-value=16 Score=26.32 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=17.8
Q ss_pred EecEEEEcCCCcchHHHHHHcCC
Q psy4101 9 QASNVILSAGTIGSPQILMISGI 31 (82)
Q Consensus 9 ~A~eVILsaGa~~sP~lL~~SGi 31 (82)
+|+.||+|+|+. |++++...|+
T Consensus 242 ~Ad~VV~AtG~~-s~~l~~~~g~ 263 (448)
T 3axb_A 242 VGEKLVVAAGVW-SNRLLNPLGI 263 (448)
T ss_dssp EEEEEEECCGGG-HHHHHGGGTC
T ss_pred cCCEEEECCCcC-HHHHHHHcCC
Confidence 789999999986 7777766664
No 18
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=39.39 E-value=16 Score=28.06 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=19.9
Q ss_pred EEEEecEEEEcCCCcchHHHHHHcCC
Q psy4101 6 HRPQASNVILSAGTIGSPQILMISGI 31 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP~lL~~SGi 31 (82)
++++|+.||+|+|+. |+.++...|+
T Consensus 235 ~~i~A~~VV~AaG~w-s~~l~~~~g~ 259 (571)
T 2rgh_A 235 IEIKAKLVINTSGPW-VDKVRNLNFT 259 (571)
T ss_dssp EEEEBSCEEECCGGG-HHHHHTTCCS
T ss_pred EEEEcCEEEECCChh-HHHHHHhhcc
Confidence 468899999999987 7777766554
No 19
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=38.56 E-value=11 Score=27.02 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=15.8
Q ss_pred EEEecEEEEcCCCcchHHHHH
Q psy4101 7 RPQASNVILSAGTIGSPQILM 27 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~ 27 (82)
+++|+.||+|+|+. |++++.
T Consensus 207 ~i~Ad~VV~AtG~~-s~~l~~ 226 (438)
T 3dje_A 207 IWRAERTFLCAGAS-AGQFLD 226 (438)
T ss_dssp EEECSEEEECCGGG-GGGTSC
T ss_pred EEECCEEEECCCCC-hhhhcC
Confidence 67889999999987 555553
No 20
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=37.71 E-value=16 Score=27.87 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=16.9
Q ss_pred cEEEEcCCCcchHHHHHHc
Q psy4101 11 SNVILSAGTIGSPQILMIS 29 (82)
Q Consensus 11 ~eVILsaGa~~sP~lL~~S 29 (82)
+.||+|+|.+.|.++|..-
T Consensus 400 ~~~vVC~~GigtS~lL~~~ 418 (485)
T 3sqn_A 400 TAYFLFQGEPAWKAFLQQE 418 (485)
T ss_dssp EEEEECCSCHHHHHHHHHH
T ss_pred eEEEECCCchhHHHHHHHH
Confidence 7899999999999999863
No 21
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=34.86 E-value=26 Score=24.54 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=16.9
Q ss_pred EEEecEEEEcCCCcchHHHHHHcC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISG 30 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SG 30 (82)
+++|+.||+|+|+. ++.++...|
T Consensus 194 ~i~a~~VV~A~G~~-s~~l~~~~g 216 (397)
T 2oln_A 194 TYRAGKVVLACGPY-TNDLLEPLG 216 (397)
T ss_dssp EEEEEEEEECCGGG-HHHHHGGGT
T ss_pred EEEcCEEEEcCCcC-hHHHhhhcC
Confidence 57889999999985 555655444
No 22
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=33.18 E-value=43 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=18.4
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGI 31 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGi 31 (82)
+++|+.||+|+|+. |+.++...|+
T Consensus 205 ~~~a~~vV~A~G~~-s~~l~~~~~~ 228 (382)
T 1ryi_A 205 DVWANHVVVASGVW-SGMFFKQLGL 228 (382)
T ss_dssp EEEEEEEEECCGGG-THHHHHHTTC
T ss_pred eEEcCEEEECCChh-HHHHHHhcCC
Confidence 57889999999986 6667666554
No 23
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=31.69 E-value=35 Score=24.36 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=18.9
Q ss_pred EEEecEEEEcCCCcchHHHHH-HcCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILM-ISGIG 32 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~-~SGig 32 (82)
+++|+.||+|+|+. |+.++. ..|+.
T Consensus 222 ~i~a~~VV~A~G~~-s~~l~~~~~g~~ 247 (405)
T 3c4n_A 222 QIRAGVIIVAAGAA-GPALVEQGLGLH 247 (405)
T ss_dssp EEEEEEEEECCGGG-HHHHHHHHHCCC
T ss_pred EEECCEEEECCCcc-HHHHHHHhcCCC
Confidence 57889999999985 666766 55653
No 24
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=30.95 E-value=31 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=18.6
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGIG 32 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGig 32 (82)
+++|+.||+|+|+. |+.++...|+.
T Consensus 216 ~~~a~~vV~a~G~~-s~~l~~~~g~~ 240 (405)
T 2gag_B 216 TIHAGKVALAGAGH-SSVLAEMAGFE 240 (405)
T ss_dssp CEEEEEEEECCGGG-HHHHHHHHTCC
T ss_pred eEECCEEEECCchh-HHHHHHHcCCC
Confidence 46789999999985 55677666653
No 25
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=30.54 E-value=50 Score=25.18 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.3
Q ss_pred EEEEecEEEEcCCCcc-hHHHHHH
Q psy4101 6 HRPQASNVILSAGTIG-SPQILMI 28 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~-sP~lL~~ 28 (82)
.+++|+.||||+|.+. .+.++..
T Consensus 302 ~~i~A~~VVlAtGg~~~~~~~~~~ 325 (572)
T 1d4d_A 302 YVIKADAVVIAAGGFAKNNERVSK 325 (572)
T ss_dssp EEEECSEEEECCCCCTTCHHHHHH
T ss_pred EEEEcCEEEEeCCCCccCHHHHHH
Confidence 4688899999999886 4555543
No 26
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=29.27 E-value=44 Score=25.26 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.9
Q ss_pred EEEEecEEEEcCCCcchH
Q psy4101 6 HRPQASNVILSAGTIGSP 23 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP 23 (82)
.+++|+.||+|+|.+..-
T Consensus 297 ~~i~A~~VVlAtGg~s~~ 314 (566)
T 1qo8_A 297 YMIGAKSVVLATGGYGMN 314 (566)
T ss_dssp EEEEEEEEEECCCCCTTC
T ss_pred EEEEcCEEEEecCCcccC
Confidence 468889999999988753
No 27
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=26.92 E-value=32 Score=24.21 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=17.5
Q ss_pred EEEecEEEEcCCCcchHHHHH
Q psy4101 7 RPQASNVILSAGTIGSPQILM 27 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~ 27 (82)
++.|+.||+|+++..++++|-
T Consensus 238 ~~~ad~VV~a~~~~~~~~ll~ 258 (425)
T 3ka7_A 238 IHDADLVISNLGHAATAVLCS 258 (425)
T ss_dssp EEECSEEEECSCHHHHHHHTT
T ss_pred EEECCEEEECCCHHHHHHhcC
Confidence 577899999999988887654
No 28
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=26.33 E-value=49 Score=24.11 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.5
Q ss_pred EEEecEEEEcCCCcchH
Q psy4101 7 RPQASNVILSAGTIGSP 23 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP 23 (82)
+++|+.||+|+|+...|
T Consensus 177 ~i~Ad~VVlAtGg~s~~ 193 (447)
T 2i0z_A 177 VLETNHVVIAVGGKSVP 193 (447)
T ss_dssp EEECSCEEECCCCSSSG
T ss_pred EEECCEEEECCCCCcCC
Confidence 47889999999998766
No 29
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=24.45 E-value=47 Score=24.62 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.1
Q ss_pred EEEEecEEEEcCCCcchHHHHH
Q psy4101 6 HRPQASNVILSAGTIGSPQILM 27 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~sP~lL~ 27 (82)
++++|+.||+|+|+. |..++.
T Consensus 195 ~~i~A~~VV~AtG~~-s~~l~~ 215 (501)
T 2qcu_A 195 YSWQARGLVNATGPW-VKQFFD 215 (501)
T ss_dssp EEEEESCEEECCGGG-HHHHHH
T ss_pred EEEECCEEEECCChh-HHHHHH
Confidence 478899999999987 666665
No 30
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=24.19 E-value=67 Score=24.24 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=16.2
Q ss_pred eEEEEecEEEEcCCCcch-HHHH
Q psy4101 5 RHRPQASNVILSAGTIGS-PQIL 26 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~s-P~lL 26 (82)
..+++|+.||+|+|.+.. +.++
T Consensus 301 ~~~i~a~~VVlAtGg~~~n~~~~ 323 (571)
T 1y0p_A 301 YYWVKADAVILATGGFAKNNERV 323 (571)
T ss_dssp EEEEECSEEEECCCCCTTCHHHH
T ss_pred EEEEECCeEEEeCCCcccCHHHH
Confidence 346888889999998864 4443
No 31
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=23.90 E-value=44 Score=23.68 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=17.6
Q ss_pred EEEecEEEEcCCCcchHHHHH
Q psy4101 7 RPQASNVILSAGTIGSPQILM 27 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~ 27 (82)
++.|+.||+|+|+-.++++|-
T Consensus 229 ~~~ad~Vv~a~~~~~~~~ll~ 249 (421)
T 3nrn_A 229 EYSFDVAISNVGVRETVKLIG 249 (421)
T ss_dssp EEECSEEEECSCHHHHHHHHC
T ss_pred EEEeCEEEECCCHHHHHHhcC
Confidence 567899999999988888663
No 32
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=23.15 E-value=55 Score=25.22 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.3
Q ss_pred EEEEecEEEEcCCCcch
Q psy4101 6 HRPQASNVILSAGTIGS 22 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~s 22 (82)
++++|+.||+|+|.+..
T Consensus 191 ~~i~A~~VVlAtGg~~~ 207 (588)
T 2wdq_A 191 VYFKARATVLATGGAGR 207 (588)
T ss_dssp EEEEEEEEEECCCCCGG
T ss_pred EEEEcCEEEECCCCCcc
Confidence 46888999999998764
No 33
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=23.05 E-value=44 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=16.7
Q ss_pred EEEecEEEEcCCCcchHHHHHHcC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISG 30 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SG 30 (82)
+++|+.||+|+|+. ++.++-..|
T Consensus 191 ~~~a~~vV~A~G~~-~~~l~~~~g 213 (389)
T 2gf3_A 191 SYTADKLIVSMGAW-NSKLLSKLN 213 (389)
T ss_dssp EEEEEEEEECCGGG-HHHHGGGGT
T ss_pred EEEeCEEEEecCcc-HHHHhhhhc
Confidence 57889999999985 556554434
No 34
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=22.26 E-value=60 Score=25.81 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.9
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGI 31 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGi 31 (82)
+++|+.||+|+|+. |+.++...|+
T Consensus 193 ~i~Ad~VV~AaG~~-s~~l~~~~g~ 216 (830)
T 1pj5_A 193 VIPADIVVSCAGFW-GAKIGAMIGM 216 (830)
T ss_dssp EEECSEEEECCGGG-HHHHHHTTTC
T ss_pred EEECCEEEECCccc-hHHHHHHhCC
Confidence 57889999999986 5777766664
No 35
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=22.07 E-value=66 Score=24.43 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.2
Q ss_pred EEEEecEEEEcCCCcch
Q psy4101 6 HRPQASNVILSAGTIGS 22 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~s 22 (82)
++++|+.||+|+|.+..
T Consensus 193 ~~i~A~~VVlAtGg~~~ 209 (540)
T 1chu_A 193 ETCHAKAVVLATGGASK 209 (540)
T ss_dssp EEEECSEEEECCCCCGG
T ss_pred EEEEcCeEEECCCCccc
Confidence 47888999999998763
No 36
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=21.86 E-value=59 Score=25.47 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=14.5
Q ss_pred EEEEecEEEEcCCCcch
Q psy4101 6 HRPQASNVILSAGTIGS 22 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~s 22 (82)
+.++|+.||||+|.+..
T Consensus 202 ~~i~A~~VVlATGG~~~ 218 (621)
T 2h88_A 202 HRFRAKNTVIATGGYGR 218 (621)
T ss_dssp EEEEEEEEEECCCCCGG
T ss_pred EEEEcCeEEECCCcccc
Confidence 56888999999998864
No 37
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=21.69 E-value=57 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.2
Q ss_pred eEEEEecEEEEcCCCcc
Q psy4101 5 RHRPQASNVILSAGTIG 21 (82)
Q Consensus 5 ~~~v~A~eVILsaGa~~ 21 (82)
.+.++|+.||||+|.+.
T Consensus 217 ~~~i~Ak~VVLATGG~g 233 (662)
T 3gyx_A 217 VHIFKANAMVVACGGAV 233 (662)
T ss_dssp EEEEECSEEEECCCCBC
T ss_pred EEEEEeCEEEECCCccc
Confidence 35688899999999876
No 38
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=21.65 E-value=74 Score=19.52 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=16.9
Q ss_pred EEEecEEEEcCCCcchHHHHHHcCC
Q psy4101 7 RPQASNVILSAGTIGSPQILMISGI 31 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~SGi 31 (82)
++.++.||+|.|.. |.++...|+
T Consensus 96 ~i~ad~vI~A~G~~--~~~~~~~g~ 118 (180)
T 2ywl_A 96 VEKAERLLLCTHKD--PTLPSLLGL 118 (180)
T ss_dssp EEEEEEEEECCTTC--CHHHHHHTC
T ss_pred EEEECEEEECCCCC--CCccccCCC
Confidence 56789999999975 555555564
No 39
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=20.91 E-value=26 Score=27.14 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=16.2
Q ss_pred EEEecEEEEcCCCcchHHHHHHc
Q psy4101 7 RPQASNVILSAGTIGSPQILMIS 29 (82)
Q Consensus 7 ~v~A~eVILsaGa~~sP~lL~~S 29 (82)
+++|+.||+|+|+. |+.++...
T Consensus 459 ~i~Ad~VVlAtG~~-s~~l~~~~ 480 (676)
T 3ps9_A 459 QATHSVVVLANGHQ-ISRFSQTS 480 (676)
T ss_dssp EEEESEEEECCGGG-GGCSTTTT
T ss_pred EEECCEEEECCCcc-hhcccccc
Confidence 47889999999987 55554443
No 40
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=20.39 E-value=68 Score=25.34 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.3
Q ss_pred EEEEecEEEEcCCCcch
Q psy4101 6 HRPQASNVILSAGTIGS 22 (82)
Q Consensus 6 ~~v~A~eVILsaGa~~s 22 (82)
+.++|+.||||+|.+..
T Consensus 205 ~~i~A~~VVlATGG~~~ 221 (660)
T 2bs2_A 205 IAYVAKGTLIATGGYGR 221 (660)
T ss_dssp EEEECSEEEECCCCCGG
T ss_pred EEEEcCEEEEccCcchh
Confidence 46888999999998863
Done!