RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4101
(82 letters)
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 88.0 bits (217), Expect = 4e-23
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR-VGDNLQDHVGMAGLTFLVDKPV 71
VI+SAGTIG+PQ+L++SG+GP+ +L + IPV+ VG L V +
Sbjct: 253 VIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLDGDFRVTGINAL 312
Query: 72 SIVQNRL 78
+V
Sbjct: 313 RVVDGST 319
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 77.6 bits (190), Expect = 3e-19
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLR--VGDNLQDHVG 59
V+L+AG+ SP IL SGIG K L + + DL + + +G
Sbjct: 289 VLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSRELG 337
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 76.5 bits (187), Expect = 7e-19
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVG--DNLQDHVG 59
V+L+AG+ SP IL SGIG K L+ +GI + DL VG + +G
Sbjct: 283 VLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSMMPKEMG 331
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 54.3 bits (129), Expect = 6e-11
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 13 VILSAGTIGSPQILMISGIGPKDHLQDMGI-PVIHDLRVGDNLQDHVGMAGLTFLVDKPV 71
VILSAG G+ +IL SGIGP D +Q + P N ++ + T
Sbjct: 248 VILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMTTIGSSPQS 307
Query: 72 SIVQNRLQV 80
++V + ++V
Sbjct: 308 AVVDSNVKV 316
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 46.8 bits (110), Expect = 3e-08
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 5 RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMA 61
A V +AG++G+ ++L+ +P + +VG+ + A
Sbjct: 273 TKVVTADRVFFAAGSVGTSKLLVSMK-------AQGHLPNLSS-QVGEGWGVLLNKA 321
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 41.9 bits (97), Expect = 1e-06
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 5 RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMA 61
+ L AG++GS ++L+ + +P ++ VG +G A
Sbjct: 269 TKEISCRYLFLGAGSLGSTELLVRAR-------DTGTLPNLNS-EVGAGWGCVLGKA 317
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 29.6 bits (67), Expect = 0.007
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 28 ISGIGPK--DHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVD 68
+SGIGP D GI + DLR ++ +H GL + D
Sbjct: 12 VSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGD 54
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 26.9 bits (58), Expect = 0.24
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 5 RHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVI 45
R +A +L+AG + + Q+L+ SG G P +
Sbjct: 266 RFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPEL 306
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 24.6 bits (53), Expect = 1.5
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 26 LMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVD 68
L+ SGI K Q MGIP ++ D + G G
Sbjct: 417 LIGSGIKEKFIFQKMGIPFR-EMHSWDYSGPYHGFDGFAIFAR 458
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP),
thioester domain {Bacillus brevis [TaxId: 1393]}
Length = 76
Score = 23.6 bits (51), Expect = 2.0
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 24 QILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGM 60
++L +SGIG D+ +G + + V + +
Sbjct: 18 RVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQV 54
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
[TaxId: 5061]}
Length = 196
Score = 23.9 bits (51), Expect = 2.4
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 53 NLQDHVGMAGLTFLVDKPVSIVQN 76
NLQD A + + +
Sbjct: 1 NLQDQT-TATVRSRITSAGAGQGQ 23
>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga
maritima [TaxId: 2336]}
Length = 391
Score = 23.8 bits (50), Expect = 2.9
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 35 DHLQDMGIPVIHDLRVGDNLQDH 57
+L+++GI + + V ++ H
Sbjct: 30 SYLKELGIDFVWLMPVFSSISFH 52
>d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 382
Score = 23.9 bits (50), Expect = 3.4
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 28 ISGIGPK-DHLQDMGIPVIHDLRVGDNLQDH 57
+ GI D+L D+GI I+ + + +H
Sbjct: 52 LQGIIDHLDYLVDLGITGIYLTPIFRSPSNH 82
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 23.5 bits (49), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 28 ISGIGPK-DHLQDMGIPVIHDLRVGDNLQDHVG 59
+ GI K D+L+++GI VI V ++ D G
Sbjct: 30 LRGIISKLDYLKELGIDVIWLSPVYESPNDDNG 62
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 23.4 bits (49), Expect = 4.5
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 3 MLRHRPQASNVILSAGTIGSPQILMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAG 62
P+ + V + G +I+ P + +P+ + H G
Sbjct: 327 HGLSDPRNALVFVGYQPQGGLGAEIIARP-PAVRILGEEVPLRASVHTLGGFSGHAGQDE 385
Query: 63 LTFLVDKP 70
L +
Sbjct: 386 LLDWLQGE 393
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 196
Score = 23.2 bits (49), Expect = 4.9
Identities = 3/24 (12%), Positives = 7/24 (29%), Gaps = 1/24 (4%)
Query: 53 NLQDHVGMAGLTFLVDKPVSIVQN 76
N+QD ++ +
Sbjct: 1 NMQDQT-TTTVSSRASSAGAGQGQ 23
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea
[TaxId: 489]}
Length = 554
Score = 23.4 bits (49), Expect = 5.3
Identities = 3/12 (25%), Positives = 8/12 (66%)
Query: 35 DHLQDMGIPVIH 46
+ Q++G+ +H
Sbjct: 120 PYFQELGLTYLH 131
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 23.1 bits (48), Expect = 6.0
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 28 ISGIGPK-DHLQDMGIPVIH 46
I GI K D+L+ +GI I
Sbjct: 30 IRGIIEKLDYLKSLGIDAIW 49
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
substrate-binding domain {Fungus (Phanerochaete
chrysosporium) [TaxId: 5306]}
Length = 181
Score = 22.8 bits (48), Expect = 6.9
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 53 NLQDHVGMAGLTFLVDKPVSI 73
N QD+ + L F +
Sbjct: 1 NAQDNPSI-NLVFTHPSIDAY 20
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain
{Pseudomonas amyloderamosa [TaxId: 32043]}
Length = 475
Score = 22.7 bits (47), Expect = 7.7
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 28 ISGIGPK-DHLQDMGIPVIH 46
G G K +L +G+ +
Sbjct: 42 YYGAGLKASYLASLGVTAVE 61
>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli
[TaxId: 562]}
Length = 195
Score = 22.8 bits (48), Expect = 7.8
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 31 IGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDKPVS 72
+ D L GI V D G+ L D P+
Sbjct: 18 VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLV 59
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 22.8 bits (48), Expect = 8.1
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 26 LMISGIGPKDHLQDMGIPVIHDLRVGDNLQDHVGMAGLTFLVDK 69
+ +GI K +Q G+ L D + G G+ +
Sbjct: 459 MFFAGIKEKFVIQKGGVLSK-QLHSYDYNGPYAGFRGVVNFGHE 501
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.408
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,593
Number of extensions: 10726
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 24
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)