BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4102
(1049 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 173/347 (49%), Gaps = 33/347 (9%)
Query: 108 RLSENPDWKILLIEAG-GDENEI-SDIPSLA-GYLQLSELDWKYKTEPPMGDSAYCLAMV 164
RL+E+PD +L++EAG DEN + ++ P LA G + S DW Y T G + +A
Sbjct: 20 RLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGYNGRSIA-- 77
Query: 165 GDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL-GNPGWGYKDVLPYFKKSE---- 219
+PRG++LGGSS ++ M+ +RG+ D+D++ + G+ GW + ++ + +K+E
Sbjct: 78 -----YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVP 132
Query: 220 --DNRNEYLLRTP-YHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE---NRDINGERQT 273
DN N P H G +++ + +PL + +E E N D+
Sbjct: 133 PADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHPL 192
Query: 274 GFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSG-----PVPKAVG 328
G + ++ G R S+S A+LRP + R NL + + Q +L+ SG P + V
Sbjct: 193 GISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLV--NSGTTNGLPAFRCVE 250
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNI-PIIKNLSVGHNL 387
+ AKKE++ SAG++ +P LL +SGIG E L + I I+ N SVG NL
Sbjct: 251 YAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNL 310
Query: 388 QDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNER-GPLTSL 431
DH+ L F V+ TF +V L N R GPLT+L
Sbjct: 311 SDHLLLPA-AFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTAL 356
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 121/293 (41%), Gaps = 33/293 (11%)
Query: 656 ILVLSSGIGPEEHLQGLNI-PIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKK------- 707
IL+ SGIG E L + I I+ N SVG NL DH+ L F V+ TF
Sbjct: 279 ILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPA-AFFVNSNQTFDNIFRDSSE 337
Query: 708 ----------ERYQVLLCLSERXXXXXXXXXXNTLFPRYIR-LQSKNPLHYPLIEPNYFQ 756
R L L +++F + N H+ I N +
Sbjct: 338 FNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWF 397
Query: 757 H----RRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLI 812
H R D + + N S + I+L + NP PLI P Y DI T+I
Sbjct: 398 HPAIPRPDTGSFMS----VTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMI 453
Query: 813 EGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCK 872
+ ++ + A+ + RP + + D E +R TI+HP T
Sbjct: 454 QAVKSNLRFLSGQAWADFVIRPF-----DPRLRDPTDDAAIESYIRDNANTIFHPVGTAS 508
Query: 873 MGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
M P VVDP L+V GVDGLR++D SI+P + + P ++G++GAD+
Sbjct: 509 MSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADL 561
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 479 ILVLSSGIGPEEHLQGLNI-PIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQT 535
IL+ SGIG E L + I I+ N SVG NL DH+ L F V+ TF
Sbjct: 279 ILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPA-AFFVNSNQTFDNIFRDSSE 337
Query: 536 LSVALQYILNER-GPLTSL 553
+V L N R GPLT+L
Sbjct: 338 FNVDLDQWTNTRTGPLTAL 356
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 158/310 (50%), Gaps = 35/310 (11%)
Query: 108 RLSENPDWKILLIEAGGDENEISDIPSLAGY--LQLSELDWKYKTEPPMGDSAYCLAMVG 165
RLSE+PD ++LLIEAG +E DI + A + LQ DW Y+TE G + G
Sbjct: 35 RLSEDPDSRVLLIEAG-EEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAGTA-------G 86
Query: 166 DRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQW-ERLGNPGWGYKDVLPYFKKSEDNRNE 224
+W RG+++GGSS L+AM Y+RG+ +D+ W + G+ WG+ ++LP F+ ED+
Sbjct: 87 RAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH--- 143
Query: 225 YLLRTPYHSKGGYLTVQESPWH------SPLAAAFVKAGEELGYENRD-INGERQTGFMI 277
P G + P H SPLA AF++AG LG + N G
Sbjct: 144 -----PLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIGVTP 198
Query: 278 AQGTIRRGSRCSTSKAFL-RPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDG 335
IR G R + + A+L + +R RKNL I ++ RL + + + +E++ R G
Sbjct: 199 NSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN----QVRSLEVVGRQG 254
Query: 336 RKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLG 394
+ +I+ AGA+ SP LLM SGIGP + L + + ++ +G NLQDH+
Sbjct: 255 SAEVF--ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGA 312
Query: 395 GLTFIVDGPV 404
G + PV
Sbjct: 313 GNLYAARKPV 322
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 111/283 (39%), Gaps = 62/283 (21%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
L++ SGIGP + L + + ++ +G NLQDH+ G + PV + ++ +
Sbjct: 275 LLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMA 334
Query: 716 LSERXXXXXXXXXXNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVS 775
Y+R S P I + G +A VS
Sbjct: 335 --------------------YMRADSFTAAGQPEI--------------VVGCGVAPIVS 360
Query: 776 AS----AAFKKY--------------IRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRI 817
S AA Y +R+ +I+P Y Q RD E +
Sbjct: 361 ESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEA 420
Query: 818 AFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPT 877
+ + + R LL P A E+ D++ + T +HP TC+MG
Sbjct: 421 SRTIGHRDELAGWRERELLPGTPNSAA-EM--DDF----IARSVITHHHPCGTCRMG--K 471
Query: 878 DPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGE 920
DP+AVVD LR+ +D L V+DASIMP + +G +A + I E
Sbjct: 472 DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAE 514
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 69/170 (40%), Gaps = 34/170 (20%)
Query: 841 GCAMFELFSDEY---WECSLRHFTFTIYHPTSTCKM---GPPTDPEAVVDPRLRVYGVDG 894
GC + + S+ + S F I HPTS + GP ++DP G D
Sbjct: 352 GCGVAPIVSESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDR 411
Query: 895 ---LRVIDASIM------------PIIVSGNPNAPTIMIGEKGADMTSRYTIR------P 933
R ++AS ++ G PN+ M D +R I
Sbjct: 412 ERFRRALEASRTIGHRDELAGWRERELLPGTPNSAAEM-----DDFIARSVITHHHPCGT 466
Query: 934 ALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGE 983
MG D +AVVD LR+ +D L V+DASIMP + +G +A + I E
Sbjct: 467 CRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAE 514
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPV 526
L++ SGIGP + L + + ++ +G NLQDH+ G + PV
Sbjct: 275 LLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPV 322
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 150/315 (47%), Gaps = 29/315 (9%)
Query: 89 RAYDFXXXXXXXXXXXXXNRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSE--LDW 146
R +D+ RLSE+P + L+EAG D+ + ++ L +++L E DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 147 KYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGNPG 205
Y EP +++ R KV+GG S NA I + D D+WE + G G
Sbjct: 72 DYPIEPQENGNSFMRHA--------RAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATG 123
Query: 206 WGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYENR 265
W + P +K+ E N + P+H G + + P P A + A E+ G
Sbjct: 124 WNAEAAWPLYKRLETNEDAGP-DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRA 182
Query: 266 DINGERQTGFMIAQGT----IRR---GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFD 318
N TG + G I R G+R S+S +++ PI ++N + +A +L+FD
Sbjct: 183 KFN----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD 238
Query: 319 KSGPVPKAVGIEILRD--GRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIP 376
+ G++I+ G H + A+ E++ S GAI++P+LLM+SGIGP HL I
Sbjct: 239 ADR---RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE 295
Query: 377 I-IKNLSVGHNLQDH 390
+ + + VG +LQDH
Sbjct: 296 VLVDSPGVGEHLQDH 310
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 170/388 (43%), Gaps = 45/388 (11%)
Query: 574 PDVQFHFAPSSVNSDGGEQI-RKILGLRDRIFNTLYKPLINAETWTILP------LLLRP 626
P +F+ + VN QI R+ G R + P++ E +T+L L+
Sbjct: 180 PRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDA 239
Query: 627 LSTGNGIRIV---FENLDKVLVIRRFSCPSCHI----LVLSSGIGPEEHLQGLNIPI-IK 678
G+ IV F + ++ + I L++ SGIGP HL I + +
Sbjct: 240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVD 299
Query: 679 NLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERXXXXXXXXXXNTLFPRYIR 738
+ VG +LQDH +G V F E Q ++ S + R
Sbjct: 300 SPGVGEHLQDHP---------EGVVQF--EAKQPMVAESTQWWEIGIFTPTEDGLDRPDL 348
Query: 739 LQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIE 798
+ +HY + + R T G + NV+ A + +RL+S++ P+++
Sbjct: 349 M-----MHYGSVPFDMNTLRHGYPTTENGFSLTPNVT-HARSRGTVRLRSRDFRDKPMVD 402
Query: 799 PNYFQ--HRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECS 856
P YF D+ ++ GIR A ++A A ++ R L PG E +DE +
Sbjct: 403 PRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPGV---EAQTDEELQDY 456
Query: 857 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 916
+R T+YHP T +MG D + +DP LRV GV GLRV DAS+MP V+ NPN +
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 917 MIGEKGADMTSRYTIRPALMGPATDLEA 944
MIGE+ AD+ IR A G T +A
Sbjct: 517 MIGERCADL-----IRSARAGETTTADA 539
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 877 TDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI--MIGEKGADM------TSR 928
TDPE D R+ V G+ R I A +G +P + E+ D T
Sbjct: 407 TDPEGH-DMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNTVY 465
Query: 929 YTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
+ + MG D + +DP LRV GV GLRV DAS+MP V+ NPN +MIGE+ AD+
Sbjct: 466 HPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADL 525
Query: 989 KQS 991
+S
Sbjct: 526 IRS 528
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 29/315 (9%)
Query: 89 RAYDFXXXXXXXXXXXXXNRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSE--LDW 146
R +D+ RLSE+P + L+EAG D+ + ++ L +++L E DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 147 KYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGNPG 205
Y EP +++ R KV+GG S N+ I + D D+WE + G G
Sbjct: 72 DYPIEPQENGNSFMRHA--------RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATG 123
Query: 206 WGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYENR 265
W + P +K+ E N + P+H G + + P P A + A E+ G
Sbjct: 124 WNAEAAWPLYKRLETNEDAGP-DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRA 182
Query: 266 DINGERQTGFMIAQGT----IRR---GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFD 318
N TG + G I R G+R S+S +++ PI ++N + +A +L+FD
Sbjct: 183 KFN----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD 238
Query: 319 KSGPVPKAVGIEILRD--GRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIP 376
+ G++I+ G H + A+ E++ S GAI++P+LLM+SGIGP HL I
Sbjct: 239 ADR---RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE 295
Query: 377 I-IKNLSVGHNLQDH 390
+ + + VG +LQDH
Sbjct: 296 VLVDSPGVGEHLQDH 310
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 169/388 (43%), Gaps = 45/388 (11%)
Query: 574 PDVQFHFAPSSVNSDGGEQI-RKILGLRDRIFNTLYKPLINAETWTILP------LLLRP 626
P +F+ + VN QI R+ G R + P++ E +T+L L+
Sbjct: 180 PRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDA 239
Query: 627 LSTGNGIRIV---FENLDKVLVIRRFSCPSCHI----LVLSSGIGPEEHLQGLNIPI-IK 678
G+ IV F + ++ + I L++ SGIGP HL I + +
Sbjct: 240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVD 299
Query: 679 NLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERXXXXXXXXXXNTLFPRYIR 738
+ VG +LQDH +G V F E Q ++ S + R
Sbjct: 300 SPGVGEHLQDHP---------EGVVQF--EAKQPMVAESTQWWEIGIFTPTEDGLDRPDL 348
Query: 739 LQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIE 798
+ +HY + + R T G + NV+ A + +RL+S++ P+++
Sbjct: 349 M-----MHYGSVPFDMNTLRHGYPTTENGFSLTPNVT-HARSRGTVRLRSRDFRDKPMVD 402
Query: 799 PNYFQ--HRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECS 856
P YF D+ ++ GIR A ++A A ++ R L PG E +DE +
Sbjct: 403 PRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPGV---EAQTDEELQDY 456
Query: 857 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 916
+R T YHP T +MG D + +DP LRV GV GLRV DAS+MP V+ NPN +
Sbjct: 457 IRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 917 MIGEKGADMTSRYTIRPALMGPATDLEA 944
MIGE+ AD+ IR A G T +A
Sbjct: 517 MIGERCADL-----IRSARAGETTTADA 539
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 877 TDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI--MIGEKGADM------TSR 928
TDPE D R+ V G+ R I A +G +P + E+ D T+
Sbjct: 407 TDPEGH-DMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNTAY 465
Query: 929 YTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
+ + MG D + +DP LRV GV GLRV DAS+MP V+ NPN +MIGE+ AD+
Sbjct: 466 HPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADL 525
Query: 989 KQS 991
+S
Sbjct: 526 IRS 528
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 29/315 (9%)
Query: 89 RAYDFXXXXXXXXXXXXXNRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSE--LDW 146
R +D+ RLSE+P + L+EAG D+ + ++ L +++L E DW
Sbjct: 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71
Query: 147 KYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGNPG 205
Y EP +++ R KV+GG S N+ I + D D+WE + G G
Sbjct: 72 DYPIEPQENGNSFMRHA--------RAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATG 123
Query: 206 WGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYENR 265
W + P +K+ E N + P+H G + + P P A + A E+ G
Sbjct: 124 WNAEAAWPLYKRLETNEDAGP-DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRA 182
Query: 266 DINGERQTGFMIAQGT----IRR---GSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFD 318
N TG + G I R G+R S+S +++ PI ++N + +A +L+FD
Sbjct: 183 KFN----TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD 238
Query: 319 KSGPVPKAVGIEILRD--GRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIP 376
+ G++I+ G H + A+ E++ S GAI++P+LLM+SGIGP HL I
Sbjct: 239 ADR---RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIE 295
Query: 377 I-IKNLSVGHNLQDH 390
+ + + VG +LQDH
Sbjct: 296 VLVDSPGVGEHLQDH 310
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 111/388 (28%), Positives = 170/388 (43%), Gaps = 45/388 (11%)
Query: 574 PDVQFHFAPSSVNSDGGEQI-RKILGLRDRIFNTLYKPLINAETWTILP------LLLRP 626
P +F+ + VN QI R+ G R + P++ E +T+L L+
Sbjct: 180 PRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDA 239
Query: 627 LSTGNGIRIV---FENLDKVLVIRRFSCPSCHI----LVLSSGIGPEEHLQGLNIPI-IK 678
G+ IV F + ++ + I L++ SGIGP HL I + +
Sbjct: 240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVD 299
Query: 679 NLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERXXXXXXXXXXNTLFPRYIR 738
+ VG +LQDH +G V F E Q ++ S + R
Sbjct: 300 SPGVGEHLQDHP---------EGVVQF--EAKQPMVAESTQWWEIGIFTPTEDGLDRPDL 348
Query: 739 LQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIE 798
+ +HY + + R T G + NV+ A + +RL+S++ P+++
Sbjct: 349 M-----MHYGSVPFDMNTLRHGYPTTENGFSLTPNVT-HARSRGTVRLRSRDFRDKPMVD 402
Query: 799 PNYFQ--HRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECS 856
P YF D+ ++ GIR A ++A A ++ R L PG E +DE +
Sbjct: 403 PRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPGV---EAQTDEELQDY 456
Query: 857 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 916
+R T+YHP T +MG D + +DP LRV GV GLRV DAS+MP V+ NPN +
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 917 MIGEKGADMTSRYTIRPALMGPATDLEA 944
MIGE+ AD+ IR A G T +A
Sbjct: 517 MIGERCADL-----IRSARAGETTTADA 539
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 877 TDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI--MIGEKGADM------TSR 928
TDPE D R+ V G+ R I A +G +P + E+ D T
Sbjct: 407 TDPEGH-DMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNTVY 465
Query: 929 YTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
+ + MG D + +DP LRV GV GLRV DAS+MP V+ NPN +MIGE+ AD+
Sbjct: 466 HPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADL 525
Query: 989 KQS 991
+S
Sbjct: 526 IRS 528
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 158/329 (48%), Gaps = 33/329 (10%)
Query: 91 YDFXXXXXXXXXXXXXNRLSENPDWKILLIEAG-GDENEISDI--PSLAGYLQLSELDWK 147
+DF RL+ENP+ +L++EAG G+ +I +I PS A L+ S+ DW
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 148 YKTEPPMGDSAYCLAMVGDRCNWP--RGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPG 205
YKT D +R P RGK LGGSS LN +V G+K +DQWE G
Sbjct: 67 YKTTMVRRDDY-------ERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKE 119
Query: 206 WGYKDVLPYFKKSEDNRNEYLLRTPYHSKGG----------YLTVQESPWHSPLAAAFVK 255
W + ++PY +KS ++ L +P K G L + +P+ L A+
Sbjct: 120 WTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKS 179
Query: 256 AGEELGYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRL 315
G+ L EN I G TI RG R S +FL ++ + N+ I E + RL
Sbjct: 180 MGQPL-IEN--IYDGEMDGLTHCCDTIYRGQR---SGSFLF-VKNKPNITIVPEVHSKRL 232
Query: 316 LFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHL--QGL 373
+ +++ K V + + G + A +E+I S G +P+LLM+SGIGP L G+
Sbjct: 233 IINEADRTCKGVTV-VTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGI 291
Query: 374 NIPIIKNLSVGHNLQDHVGLGGLTFIVDG 402
N I+ + VG NL DH G+ + + DG
Sbjct: 292 NT-IVDSRHVGQNLMDHPGVPFVLRVKDG 319
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 140/332 (42%), Gaps = 46/332 (13%)
Query: 628 STGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHL--QGLNIPIIKNLSVGHN 685
+ GN + F + + +L F P L++ SGIGP L G+N I+ + VG N
Sbjct: 249 AAGNELNF-FADREVILSQGVFETPK---LLMLSGIGPTRELSRHGINT-IVDSRHVGQN 303
Query: 686 LQDHVGLGGLTFIVDG----PVTFKK--ERYQVLLCLSERXXXXXXXXXXNTL-FPR--- 735
L DH G+ + + DG V + +R V+ ++ + FPR
Sbjct: 304 LMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDK 363
Query: 736 -------YIRLQSKN-------PLHYPLIEPNY-------FQHRRDIETLIEGIRIAFNV 774
Y + ++ N PL P E ++ FQ + + + ++
Sbjct: 364 YLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDL 423
Query: 775 SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNV-SASAAFQKYNSR 833
+ + L S +P P I N+F + DI + EGIR ++++ F+
Sbjct: 424 VRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVES 483
Query: 834 PLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVD 893
MP L SD+ ++ T +HPT T ++ D + VVDP+L+V+G+
Sbjct: 484 EYPWEMP------LDSDKEMHRAVLDRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIK 536
Query: 894 GLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
LRV DAS++PII +GEK ADM
Sbjct: 537 KLRVADASVIPIIPDCRIQNSVYAVGEKCADM 568
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 943 EAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
+ VVDP+L+V+G+ LRV DAS++PII +GEK ADM
Sbjct: 523 QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADM 568
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 460 FENLDKVLVIRRFSCPSCHILVLSSGIGPEEHL--QGLNIPIIKNLSVGHNLQDHVGLGG 517
F + + +L F P L++ SGIGP L G+N I+ + VG NL DH G+
Sbjct: 257 FADREVILSQGVFETPK---LLMLSGIGPTRELSRHGINT-IVDSRHVGQNLMDHPGVPF 312
Query: 518 LTFIVDG 524
+ + DG
Sbjct: 313 VLRVKDG 319
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 32/305 (10%)
Query: 108 RLSENPDWKILLIEAGGDENE----ISDIPSLAGYLQLSELDWKYKTEPPMGDSAYCLAM 163
RL+ENP+ +L+IE+G E++ I D+ + G + S +D Y+T ++ L
Sbjct: 37 RLTENPNISVLVIESGSYESDRGPIIEDLNAY-GDIFGSSVDHAYETVELATNNQTALIR 95
Query: 164 VGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL-GNPGWGYKDVLPYFKKSEDNR 222
G+ LGGS+++N + R +K D WE + GN GW + +V Y ++E R
Sbjct: 96 SGNG--------LGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERAR 147
Query: 223 N--------EYLLRTPYHSKGGYLTVQESPW-----HSPLAAAFVKAGEELGY-ENRDIN 268
+ H G TV P +SP+ A + A E+ G +D
Sbjct: 148 APNAKQIAAGHYFNASCHGVNG--TVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFG 205
Query: 269 GERQTGFMIAQGTIRRGS-RCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAV 327
G + T+ R ++ +L P R NL + ++L ++G P+AV
Sbjct: 206 CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAV 265
Query: 328 GIEI-LRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLSVGHN 386
G+E G H + AK E++ +AG+ SP +L SGIG + L+ L I + +L VG N
Sbjct: 266 GVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLN 325
Query: 387 LQDHV 391
LQD
Sbjct: 326 LQDQT 330
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 17/261 (6%)
Query: 661 SGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERX 720
SGIG + L+ L I + +L VG NLQD + I + + +
Sbjct: 301 SGIGMKSILEPLGIDTVVDLPVGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGD 360
Query: 721 XXXXXXXXXNTLFPRYIRLQ-SKNPLHYPLIEPNYFQHRRD--IETLIEGIRIAFNVSAS 777
NT ++ ++ H +++ RD + + + + +
Sbjct: 361 YSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAGV 420
Query: 778 AAF---------KKYIRLQSKNP-LHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAF 827
A+F + Y+ + K+P LH+ +P YF + D+ ++A N+S S A
Sbjct: 421 ASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAM 480
Query: 828 QKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRL 887
Q Y + + PG + W + + YH TC M P + VVD
Sbjct: 481 QTYFAGETI---PGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSM-MPKEMGGVVDNAA 536
Query: 888 RVYGVDGLRVIDASIMPIIVS 908
RVYGV GLRVID SI P +S
Sbjct: 537 RVYGVQGLRVIDGSIPPTQMS 557
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 929 YTIRPALMGPAT------DLEAVVDPRLRVYGVDGLRVIDASIMPIIVS 971
Y RP G T ++ VVD RVYGV GLRVID SI P +S
Sbjct: 509 YHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMS 557
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 84 TKTLLRAYDFXXXXXXXXXXXXXNRLSENPDWKILLIEAG---GDENEISDIPSLAGYLQ 140
+K + YD+ +L+ENP K+L+IE G ++ I + P+ G +
Sbjct: 18 SKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIF 77
Query: 141 LSELDWKYKTEPPMGDSAYCLAMVGDRCNWPR-GKVLGGSSVLNAMIYVRGNKNDYDQWE 199
+ +D Y T P ++ +R N + GK LGGS+++N + R +K D WE
Sbjct: 78 GTTVDQNYLTVP----------LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWE 127
Query: 200 RL-GNPGWGYKDVLPYFKKSEDNRN--------EYLLRTPYHSKGGYLTVQE------SP 244
++ G GW + ++ Y KK+E R + H G TVQ P
Sbjct: 128 KVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNG--TVQSGARDNGQP 185
Query: 245 WHSPLAAAFVKAGEELGY--ENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRK 302
W SP+ A + LG + + G + MI R ++A+L P R
Sbjct: 186 W-SPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRS 244
Query: 303 NLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHI-IRAKKEIISSAGAINSPQLLMV 361
NL I ++LF ++ P+AVG+ + + + AK E++ +AG+ SP +L
Sbjct: 245 NLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEY 304
Query: 362 SGIGPEEHLQGLNIPIIKNLSVGHNLQDHV 391
SGIG + L N+ + +L VG N+QD
Sbjct: 305 SGIGLKSVLDQANVTQLLDLPVGINMQDQT 334
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 108/265 (40%), Gaps = 25/265 (9%)
Query: 661 SGIGPEEHLQGLNIPIIKNLSVGHNLQDH-------------VGLGGLTFIVDGPVTFKK 707
SGIG + L N+ + +L VG N+QD G G F + TF
Sbjct: 305 SGIGLKSVLDQANVTQLLDLPVGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTETFGD 364
Query: 708 ERYQVLLCLSERXXXXXXXXXXNTLFPRY--IRLQSKNPLHYPLIEPNYFQHRRDIETLI 765
Q L+ + F +++Q +N ++ L E F ++
Sbjct: 365 YAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAF---AELFMDT 421
Query: 766 EGIRIAFNVSASAAFKK-YIRLQSKNPLHYPLI-EPNYFQHRRDIETLIEGIRIAFNVSA 823
EG +I F++ F + + + S +P + +P +F + D+ ++A ++++
Sbjct: 422 EG-KINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTS 480
Query: 824 SAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVV 883
A ++Y + L PG + + + W + +H S+C M + VV
Sbjct: 481 QGAMKEYFAGETL---PGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSM-MSRELGGVV 536
Query: 884 DPRLRVYGVDGLRVIDASIMPIIVS 908
D +VYG GLRVID SI P VS
Sbjct: 537 DATAKVYGTQGLRVIDGSIPPTQVS 561
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVS 971
+L VVD +VYG GLRVID SI P VS
Sbjct: 531 ELGGVVDATAKVYGTQGLRVIDGSIPPTQVS 561
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 40/237 (16%)
Query: 165 GDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYD----QWERLGNPGWGYKDVLPYFKKSED 220
GD + RG+VLGG+S++NA +Y R N + +W+ + ++ D
Sbjct: 92 GDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWD------------MDLVNQTYD 139
Query: 221 NRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAG--EELGYENRDINGERQTGFMIA 278
+ ++ P + W S AF++AG + G+ G R TG
Sbjct: 140 WVEDTIVYKP----------DKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFD 189
Query: 279 QGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GR 336
R S +K P LR +H ++E +++F + A+G+ I +D G
Sbjct: 190 NNGTRHASDELLNKG--DPNNLRVAVHASVE----KIIFSSNSSGVTAIGV-IYKDSNGT 242
Query: 337 KH--IIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPII-KNLSVGHNLQDH 390
H +R + E+I SAG I SPQLL++SG+GPE +L LNIP++ + VG L D+
Sbjct: 243 PHQAFVRGEGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 299
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 41/273 (15%)
Query: 657 LVLSSGIGPEEHLQGLNIPII-KNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
L+L SG+GPE +L LNIP++ + VG L D+ FI P + +L
Sbjct: 266 LLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP----RNFINILPPNPIEPSTVTVLG 321
Query: 716 LSERXXXXXXXXXXNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVS 775
++ ++ P NP YPL + + + I N
Sbjct: 322 ITSNFYQCSFSSLPFSIPPFAFF---PNPT-YPLPNSTFAHFVNKVPGPLSYGSITLNSD 377
Query: 776 ASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPL 835
+ +R+ P ++ NY+ + D+ + G++ + +S A + Y L
Sbjct: 378 SD------VRVA-------PNVKFNYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDL 424
Query: 836 LTPMPGCAMFELF---------SDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
PG F++ D +E R + +H C +G V+D
Sbjct: 425 ----PGIDGFDILGIPLPENQTDDAAFETFCREAVASYWHYHGGCLVG------EVLDGD 474
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 919
RV G++ LRV+D S P + +P +M+G
Sbjct: 475 FRVTGINALRVVDGSTFPYSPASHPQGFYLMLG 507
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 945 VVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 982
V+D RV G++ LRV+D S P + +P +M+G
Sbjct: 470 VLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLG 507
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 480 LVLSSGIGPEEHLQGLNIPII-KNLSVGHNLQDH 512
L+L SG+GPE +L LNIP++ + VG L D+
Sbjct: 266 LLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 299
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 31/225 (13%)
Query: 172 RGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPY 231
RG+VLGG+S++NA +Y R N + Y W V ++ ED ++ P
Sbjct: 99 RGRVLGGTSIINAGVYARANTSIYSA----SGVDWDMDLVNQTYEWVEDT----IVYKP- 149
Query: 232 HSKGGYLTVQESPWHSPLAAAFVKAGEELGYENRDINGERQTGFMIAQGTI-RRGSRCST 290
W S AF++AG + N + + + G I T +G+R +
Sbjct: 150 ---------NSQSWQSVTKTAFLEAGV---HPNHGFSLDHEEGTRITGSTFDNKGTRHAA 197
Query: 291 SKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKH--IIRAKKEI 346
+ + NL + + +++F + P A G+ I RD G H +R+K E+
Sbjct: 198 DELLNK--GNSNNLRVGVHASVEKIIFSNA-PGLTATGV-IYRDSNGTPHQAFVRSKGEV 253
Query: 347 ISSAGAINSPQLLMVSGIGPEEHLQGLNIPII-KNLSVGHNLQDH 390
I SAG I +PQLL++SG+GPE +L LNIP++ + VG L D+
Sbjct: 254 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 298
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 103/274 (37%), Gaps = 43/274 (15%)
Query: 657 LVLSSGIGPEEHLQGLNIPII-KNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
L+L SG+GPE +L LNIP++ + VG L D+ FI P + +L
Sbjct: 265 LLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP----RNFINILPPNPIEPTIVTVLG 320
Query: 716 LSERXXXXXXXXXXNTLFPRYIRLQSKNPLHYPLIEPN-YFQHRRDIETLIEGIRIAFNV 774
+S T P S PL PN F H A V
Sbjct: 321 ISNDFYQCSFSSLPFTTPPFGFFPSSSYPL------PNSTFAH------------FASKV 362
Query: 775 SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRP 834
+ ++ S N P ++ NY+ + D+ + G++ + ++ A + Y
Sbjct: 363 AGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVED 422
Query: 835 LLTPMPGCAMFELF---------SDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDP 885
L PG F + D +E R + +H C +G V+D
Sbjct: 423 L----PGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDG 472
Query: 886 RLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 919
RV G++ LRV+D S P + +P +M+G
Sbjct: 473 DFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 945 VVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 982
V+D RV G++ LRV+D S P + +P +M+G
Sbjct: 469 VLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 480 LVLSSGIGPEEHLQGLNIPII-KNLSVGHNLQDH 512
L+L SG+GPE +L LNIP++ + VG L D+
Sbjct: 265 LLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 298
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 31/225 (13%)
Query: 172 RGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPY 231
RG+VLGG+S++NA +Y R N + Y W V ++ ED ++ P
Sbjct: 99 RGRVLGGTSIINAGVYARANTSIYSA----SGVDWDMDLVNQTYEWVEDT----IVYKP- 149
Query: 232 HSKGGYLTVQESPWHSPLAAAFVKAGEELGYENRDINGERQTGFMIAQGTI-RRGSRCST 290
W S AF++AG + N + + + G I T +G+R +
Sbjct: 150 ---------NSQSWQSVTKTAFLEAGV---HPNHGFSLDHEEGTRITGSTFDNKGTRHAA 197
Query: 291 SKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKH--IIRAKKEI 346
+ + NL + + +++F + P A G+ I RD G H +R+K E+
Sbjct: 198 DELLNK--GNSNNLRVGVHASVEKIIFSNA-PGLTATGV-IYRDSNGTPHQAFVRSKGEV 253
Query: 347 ISSAGAINSPQLLMVSGIGPEEHLQGLNIPII-KNLSVGHNLQDH 390
I SAG I +PQLL++SG+GPE +L LNIP++ + VG L D+
Sbjct: 254 IVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 298
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 103/274 (37%), Gaps = 43/274 (15%)
Query: 657 LVLSSGIGPEEHLQGLNIPII-KNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
L+L SG+GPE +L LNIP++ + VG L D+ FI P + +L
Sbjct: 265 LLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP----RNFINILPPNPIEPTIVTVLG 320
Query: 716 LSERXXXXXXXXXXNTLFPRYIRLQSKNPLHYPLIEPN-YFQHRRDIETLIEGIRIAFNV 774
+S T P S PL PN F H A V
Sbjct: 321 ISNDFYQCSFSSLPFTTPPFGFFPSSSYPL------PNSTFAH------------FASKV 362
Query: 775 SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRP 834
+ ++ S N P ++ NY+ + D+ + G++ + ++ A + Y
Sbjct: 363 AGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVED 422
Query: 835 LLTPMPGCAMFELF---------SDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDP 885
L PG F + D +E R + +H C +G V+D
Sbjct: 423 L----PGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVG------KVLDG 472
Query: 886 RLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 919
RV G++ LRV+D S P + +P +M+G
Sbjct: 473 DFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 945 VVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 982
V+D RV G++ LRV+D S P + +P +M+G
Sbjct: 469 VLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLG 506
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 480 LVLSSGIGPEEHLQGLNIPII-KNLSVGHNLQDH 512
L+L SG+GPE +L LNIP++ + VG L D+
Sbjct: 265 LLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 298
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 923 ADMTSRYTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 982
A M S + + +G ++ AVVD ++V+G + L ++DA I+P + +GNP +
Sbjct: 469 ATMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAA 527
Query: 983 EKGA 986
E+ A
Sbjct: 528 EQAA 531
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 866 HPTSTCKMGPPTDPE-AVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGA 923
H S+ +G + P+ AVVD ++V+G + L ++DA I+P + +GNP + E+ A
Sbjct: 475 HWVSSTTIG--SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAA 531
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
Query: 340 IRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNI-PIIK----------NLSVGHNLQ 388
+ K +I SAGA + ++L SGIGP + +Q + P NL VG N Q
Sbjct: 242 VTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQ 301
Query: 389 DHVGLGGLTFIVDGPVTFKKERYQTL------SVALQYILNERG 426
D+ + + P E + + + A QY+ N+ G
Sbjct: 302 DNP---SINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSG 342
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 923 ADMTSRYTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 982
A M S + + +G ++ AVVD ++V+G + L ++DA I+P + +GNP +
Sbjct: 474 ATMNSNHWVSSTTIG-SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAA 532
Query: 983 EKGA 986
E+ A
Sbjct: 533 EQAA 536
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 866 HPTSTCKMGPPTDPE-AVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGA 923
H S+ +G + P+ AVVD ++V+G + L ++DA I+P + +GNP + E+ A
Sbjct: 480 HWVSSTTIG--SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAA 536
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
Query: 340 IRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNI-PIIK----------NLSVGHNLQ 388
+ K +I SAGA + ++L SGIGP + +Q + P NL VG N Q
Sbjct: 247 VTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQ 306
Query: 389 DHVGLGGLTFIVDGPVTFKKERYQTL------SVALQYILNERG 426
D+ + + P E + + + A QY+ N+ G
Sbjct: 307 DNP---SINLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSG 347
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIR 341
RLR I T LR K+ PV G E LRDG +H +R
Sbjct: 14 RLRHQESIEGATATLRCELSKAAPVEWRKGRESLRDGDRHSLR 56
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 865 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEK 921
YHP C +G TD RV G L V D S++P V NP + E+
Sbjct: 439 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAER 489
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 865 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEK 921
YHP C +G TD RV G L V D S++P V NP + E+
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAER 491
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 865 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEK 921
YHP C +G TD RV G L V D S++P V NP + E+
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAER 491
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 865 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEK 921
YHP C +G TD RV G L V D S++P V +P + E+
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVDPFVTITALAER 491
>pdb|4HT4|A Chain A, Molecular Basis Of Vancomycin Resistance Transfer In
Staphylococcus Aureus
Length = 195
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 973 NPNAPTIMIGEKGADMKQSYLDQEEEGDPGSEQINLKEEDAENRTQWRNGVKKPSKLPAM 1032
NP+A ++ +G D K + + + +G+ N KE+ E R +W N K +
Sbjct: 128 NPHA-HLLCTLRGLD-KNNEFEPKRKGNDYIRDWNTKEKHNEWRKRWENVQNKHLEKNGF 185
Query: 1033 SIKISADS 1040
S+++SADS
Sbjct: 186 SVRVSADS 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,991,217
Number of Sequences: 62578
Number of extensions: 1400216
Number of successful extensions: 2866
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2748
Number of HSP's gapped (non-prelim): 80
length of query: 1049
length of database: 14,973,337
effective HSP length: 109
effective length of query: 940
effective length of database: 8,152,335
effective search space: 7663194900
effective search space used: 7663194900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)