BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4102
(1049 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 327 bits (838), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 189/415 (45%), Positives = 253/415 (60%), Gaps = 30/415 (7%)
Query: 44 PTNTKTDKVTAAMLGILPVVMAALTVLRYNNMDPESRPTNTKTLLRA-----YDFIVIGA 98
PT T +A ML M L V + D E + R+ YDFIVIG
Sbjct: 18 PTLASTCGGSAFML-----FMGLLEVFIRSQCDLEDPCGRASSRFRSEPDYEYDFIVIGG 72
Query: 99 GSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSELDWKYKTEP-PMGDS 157
GSAG+VVA+RLSE P WK+LLIEAGGDE + IPS+ S++D++Y TEP PM
Sbjct: 73 GSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNTEPEPMA-- 130
Query: 158 AYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYKDVLPYFKK 217
CL+ + RC WPRGKVLGG+SVLN M+YVRGN+ DYD W GNPGW Y DVLP+FKK
Sbjct: 131 --CLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKK 188
Query: 218 SEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYENRDINGERQTGFMI 277
SEDN + + T YH+KGG L V + P++ PL+ A +KAGEELG+ D+NG+ TGFMI
Sbjct: 189 SEDNLDLDEVGTEYHAKGGLLPVGKFPYNPPLSYAILKAGEELGFSVHDLNGQNSTGFMI 248
Query: 278 AQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GR 336
AQ T R G R S+++AFLRP R+R NLHI + T A ++L +G+E+ G
Sbjct: 249 AQMTARNGIRYSSARAFLRPARMRNNLHILLNTTATKILIHPH--TKNVLGVEVSDQFGS 306
Query: 337 KHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGG 395
I KKE++ SAGA+NSP +L++SG+GP++ LQ +N+ + NL VG NL +HV
Sbjct: 307 TRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYFT 366
Query: 396 LTFIVD---GPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPS 447
FI D P+ + + A++Y+L G ++ G + A + T+YA S
Sbjct: 367 NFFIDDADTAPLNW--------ATAMEYLLFRDGLMSGTGISDVTAKLATRYADS 413
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 150/298 (50%), Gaps = 12/298 (4%)
Query: 640 LDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFI 698
+ K +V+ + S HIL+LS G+GP++ LQ +N+ + NL VG NL +HV FI
Sbjct: 312 VKKEVVLSAGAVNSPHILLLS-GVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYFTNFFI 370
Query: 699 VDG---PVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLH-----YPLI 750
D P+ + + LL + S T L RY + L Y
Sbjct: 371 DDADTAPLNWATA-MEYLLFRDGLMSGTGISDVTAKLATRYADSPERPDLQLYFGGYLAS 429
Query: 751 EPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIET 810
Q + I+I F + + +I L+S +PL P I NY H +D++T
Sbjct: 430 CARTGQVGELLSNNSRSIQI-FPAVLNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKT 488
Query: 811 LIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTST 870
L+EGI+ +S + ++Y R T + GC SD YWEC++R T H +
Sbjct: 489 LVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGS 548
Query: 871 CKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSR 928
CKMGP DP AVV+ LRV+G+ GLRV+D SIMP + SGN +AP +MI EKGA + R
Sbjct: 549 CKMGPSHDPMAVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKR 606
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGA 986
MGP+ D AVV+ LRV+G+ GLRV+D SIMP + SGN +AP +MI EKGA
Sbjct: 551 MGPSHDPMAVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGA 601
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 27/172 (15%)
Query: 463 LDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFI 521
+ K +V+ + S HIL+LS G+GP++ LQ +N+ + NL VG NL +HV FI
Sbjct: 312 VKKEVVLSAGAVNSPHILLLS-GVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYFTNFFI 370
Query: 522 VD---GPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQF 578
D P+ + + A++Y+L G ++ G + A + T+YA S + PD+Q
Sbjct: 371 DDADTAPLNW--------ATAMEYLLFRDGLMSGTGISDVTAKLATRYADS-PERPDLQL 421
Query: 579 HFAPSSVNSDGGEQIRKILGLRDRIFNTLYKPLINAETWTILPLLLRPLSTG 630
+F + Q+ ++L N+ + I P +L P S G
Sbjct: 422 YFGGYLASCARTGQVGELLS-------------NNSRSIQIFPAVLNPRSRG 460
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 324 bits (830), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 184/412 (44%), Positives = 251/412 (60%), Gaps = 28/412 (6%)
Query: 44 PTNTKTDKVTAAMLGILPVVMAALTVLRYNNMDPESRPTNTKTLLRA-----YDFIVIGA 98
PT T +A ML M L V + D E T R+ YDFIVIG
Sbjct: 18 PTLASTCGGSAFML-----FMGLLEVFIRSQCDLEDPCGRASTRFRSEPDYEYDFIVIGG 72
Query: 99 GSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSELDWKYKTEPPMGDSA 158
GSAG+VVA+RLSE P WK+LLIEAGGDE + IPS+ S++D++Y TEP +
Sbjct: 73 GSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNTEP---ERM 129
Query: 159 YCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYKDVLPYFKKS 218
CL+ + RC WPRGKVLGG+SV+N M+Y+RGN+ DYD W GNPGW Y+DVLP+FKKS
Sbjct: 130 ACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKS 189
Query: 219 EDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYENRDINGERQTGFMIA 278
EDN + T YH+KGG L V + P++ PL+ A +KAGEE+G+ +D+NG+ TGFMIA
Sbjct: 190 EDNLELDAVGTEYHAKGGLLPVGKFPYNPPLSYALLKAGEEMGFSVQDLNGQNSTGFMIA 249
Query: 279 QGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GRK 337
Q T R G R S+++AFLRP R+R NLHI + T ++L VG+E+ G
Sbjct: 250 QMTARNGIRYSSARAFLRPARMRNNLHILLNTTVTKVLIHPG--TKNVVGVEVSDQFGSM 307
Query: 338 HIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGL 396
I KKE+I S GA+NSPQ+L++SG+GP+E LQ +N+ + +L VG NL +HV
Sbjct: 308 RKILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYFTN 367
Query: 397 TFIVD---GPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYA 445
FI D P+ + + A++Y+L G ++ G + A + T++A
Sbjct: 368 FFIDDADTAPLNW--------ATAMEYLLFRDGLMSGTGISDVTAKMATRWA 411
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/328 (33%), Positives = 162/328 (49%), Gaps = 20/328 (6%)
Query: 618 TILPLLLRPLS---TGNGIRIVFENLDKVLVIRRF-----SCPSCHILVLSSGIGPEEHL 669
T+ +L+ P + G + F ++ K+LV + + S IL+LS G+GP+E L
Sbjct: 282 TVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLS-GVGPKEDL 340
Query: 670 QGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDG---PVTFKKERYQVLLCLSERTDDSTY 725
Q +N+ + +L VG NL +HV FI D P+ + + LL +
Sbjct: 341 QKVNVRPVHHLPGVGKNLHNHVAYFTNFFIDDADTAPLNWATA-MEYLLFRDGLMSGTGI 399
Query: 726 STYTNTLFPRYIRLQSKNPLH-----YPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAF 780
S T + R+ + L Y Q + I+I F +
Sbjct: 400 SDVTAKMATRWADRPNLPDLQLYFGGYLASCARTGQVGELLSNNSRAIQI-FPAVLNPKS 458
Query: 781 KKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMP 840
+ YI L+S +PL P I NY RD++TL+EGI+ A +S ++ ++Y R T +
Sbjct: 459 RGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVK 518
Query: 841 GCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDA 900
GC SD YWEC++R T H +CKMGP DP AVV+ LRV+GV GLRV+D
Sbjct: 519 GCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVMDT 578
Query: 901 SIMPIIVSGNPNAPTIMIGEKGADMTSR 928
SIMP + +GN +AP +MI EKGA + R
Sbjct: 579 SIMPKVTAGNTHAPAVMIAEKGAYLLKR 606
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGA 986
MGP+ D AVV+ LRV+GV GLRV+D SIMP + +GN +AP +MI EKGA
Sbjct: 551 MGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGA 601
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 37/206 (17%)
Query: 439 FVNTKYAPSETHQGSNGIRIV-----FENLDKVLVIRRF-----SCPSCHILVLSSGIGP 488
+NT H G+ + V F ++ K+LV + + S IL+LS G+GP
Sbjct: 278 LLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLS-GVGP 336
Query: 489 EEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVD---GPVTFKKERYQTLSVALQYIL 544
+E LQ +N+ + +L VG NL +HV FI D P+ + + A++Y+L
Sbjct: 337 KEDLQKVNVRPVHHLPGVGKNLHNHVAYFTNFFIDDADTAPLNW--------ATAMEYLL 388
Query: 545 NERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIF 604
G ++ G + A + T++A + PD+Q +F + Q+ ++L R
Sbjct: 389 FRDGLMSGTGISDVTAKMATRWADR-PNLPDLQLYFGGYLASCARTGQVGELLSNNSRAI 447
Query: 605 NTLYKPLINAETWTILPLLLRPLSTG 630
I P +L P S G
Sbjct: 448 Q-------------IFPAVLNPKSRG 460
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/312 (41%), Positives = 183/312 (58%), Gaps = 25/312 (8%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD---------ENEISDIPSLAGYLQL 141
Y FIV+GAGSAG V+ANRL+E+P+ ++LL+EAG + +I +L L
Sbjct: 46 YTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLCD 105
Query: 142 SELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL 201
+ +W Y TE G + G WPRG+V GGSS LNAM+Y+RG+ DY++W R
Sbjct: 106 DKYNWYYHTEAQPG-------LDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQ 158
Query: 202 GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELG 261
G GW Y LPYF+K++ + L Y G L V + PL AF++A + G
Sbjct: 159 GAEGWDYAHCLPYFRKAQKHE---LGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAG 215
Query: 262 YE-NRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
Y D+NG +Q GF TI +G R ST+ A+LRP R NL ++T R+LF+ +
Sbjct: 216 YPFTEDMNGFQQEGFGWMDMTIHQGKRWSTASAYLRPALSRPNLRAEVQTLVSRVLFEGT 275
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+AVG+E ++DG+ H +E+I S GAINSPQLLM+SG+G + L+ L IP++ +
Sbjct: 276 ----RAVGVEYIKDGQSHKAYVSREVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCH 331
Query: 381 L-SVGHNLQDHV 391
L VG NLQDH+
Sbjct: 332 LPGVGQNLQDHL 343
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 159/332 (47%), Gaps = 21/332 (6%)
Query: 606 TLYKPLINAETWTILPLLLRPLSTGNGIRIVFENLD-KVLVIRRFSCPSCHI----LVLS 660
L +P + AE T++ +L + G+ + + K V R I L++
Sbjct: 253 ALSRPNLRAEVQTLVSRVLFEGTRAVGVEYIKDGQSHKAYVSREVILSGGAINSPQLLML 312
Query: 661 SGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQV------L 713
SG+G + L+ L IP++ +L VG NLQDH+ + + P+T + + L
Sbjct: 313 SGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEIY-IQHACTQPITLHSAQKPLRKVCIGL 371
Query: 714 LCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFN 773
L T D + F R + + + H R T E ++
Sbjct: 372 EWLWRFTGDGATAHLETGGFIRSRPGVPHPDIQFHFLPSQVIDHGRK-PTQQEAYQVHVG 430
Query: 774 VSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSR 833
+ A +++L+S NP +P+I PNY D+E + +++ + A AF + +
Sbjct: 431 -TMRATSVGWLKLRSTNPQDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGK 489
Query: 834 PLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVD 893
L PG + SD+ + +R + YHP+ TCKMG P+DP AVVD + RV GV+
Sbjct: 490 EL---QPGS---HVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVE 543
Query: 894 GLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
LRVIDASIMP +VSGN NAPTIMI EK AD+
Sbjct: 544 NLRVIDASIMPSVVSGNLNAPTIMIAEKAADV 575
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 41/53 (77%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MG +D AVVD + RV GV+ LRVIDASIMP +VSGN NAPTIMI EK AD+
Sbjct: 523 MGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLNAPTIMIAEKAADV 575
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKER--YQTL 536
L++ SG+G + L+ L IP++ +L VG NLQDH+ + + P+T + + +
Sbjct: 309 LLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEIY-IQHACTQPITLHSAQKPLRKV 367
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ L+++ G + +E F+ ++ G PD+QFHF PS V G
Sbjct: 368 CIGLEWLWRFTGD-GATAHLETGGFIRSR---PGVPHPDIQFHFLPSQVIDHG 416
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 188/312 (60%), Gaps = 25/312 (8%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD---------ENEISDIPSLAGYLQL 141
Y F+V+GAGSAG V+A+RL+E+P+ ++LL+EAG + +I +L L
Sbjct: 43 YTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLCD 102
Query: 142 SELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL 201
+ +W Y TEP G + L WPRG+V GGSS LNAM+Y+RG+ DY++W R
Sbjct: 103 DKYNWYYHTEPQPGMDSRVL-------YWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRE 155
Query: 202 GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELG 261
G GW Y LPYF+K++ R+E L Y G L V + PL AF++A + G
Sbjct: 156 GAEGWDYAHCLPYFRKAQ--RHE-LGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAG 212
Query: 262 YE-NRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
Y D+NG +Q GF T+ +G R ST+ A+L P+ R NL ++T R+LF+ +
Sbjct: 213 YPFTEDMNGFQQEGFGWMDMTVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFEGT 272
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+AVG+E ++DG++H +E+I S GAINSPQLLM+SG+G + L+ L+IP++ +
Sbjct: 273 ----RAVGVEYIKDGQRHKAYVSREVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCH 328
Query: 381 L-SVGHNLQDHV 391
L VG NLQDH+
Sbjct: 329 LPGVGQNLQDHL 340
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 29/335 (8%)
Query: 607 LYKPLINAETWTILPLLLRPLSTGNGIRIVFE-NLDKVLVIRRFSCPSCHI----LVLSS 661
L +P + AE T++ +L + G+ + + K V R I L++ S
Sbjct: 251 LSRPNLRAEVQTLVSRVLFEGTRAVGVEYIKDGQRHKAYVSREVILSGGAINSPQLLMLS 310
Query: 662 GIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF---KKERYQVLLCL- 716
G+G + L+ L+IP++ +L VG NLQDH+ + + P+T +K +V + L
Sbjct: 311 GVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVY-VQQACTQPITLHSAQKPLRKVCIGLE 369
Query: 717 ---SERTDDSTYSTYTNTLFPRYIRLQSKNP---LHYPLIEPNYFQHRRDIETLIEGIRI 770
S D +T T +IR + P + + + H R T E ++
Sbjct: 370 WLWSYTGDGATAHLETGG----FIRSRPGVPHPDIQFHFLPSQVIDHGRK-PTQQEAYQV 424
Query: 771 AFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKY 830
+ A +++L+S NP +P+I PNY D+E + +R++ + A A +
Sbjct: 425 HVG-TMRATSVGWLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPF 483
Query: 831 NSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVY 890
+ L PG + SD+ + +R + YHP+ TCKMG +DP AVVD + +V
Sbjct: 484 RGKEL---QPGS---HVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVI 537
Query: 891 GVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
GV+ LRV+DASIMP +VSGN NAPT+MI EK AD+
Sbjct: 538 GVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADI 572
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMKQSYLDQ 995
MG ++D AVVD + +V GV+ LRV+DASIMP +VSGN NAPT+MI EK AD+ + +
Sbjct: 520 MGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADIIKGHPAL 579
Query: 996 EEEGDP 1001
E++ P
Sbjct: 580 EDKNVP 585
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKER--YQTL 536
L++ SG+G + L+ L+IP++ +L VG NLQDH+ + + P+T + + +
Sbjct: 306 LLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVY-VQQACTQPITLHSAQKPLRKV 364
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ L+++ + G + +E F+ ++ G PD+QFHF PS V G
Sbjct: 365 CIGLEWLWSYTGD-GATAHLETGGFIRSR---PGVPHPDIQFHFLPSQVIDHG 413
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 201/364 (55%), Gaps = 37/364 (10%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGYLQLSELDWKYKT 150
D++V+G GSAGAVVA+RLS +P ++ +EAG D+N +P+ L SE+DW Y T
Sbjct: 6 DYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDWDYLT 65
Query: 151 EP-PMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
EP P D G WPRGKVLGGSS +NAM++VRG +DYD+W P W Y
Sbjct: 66 EPQPELD--------GREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYA 117
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGG---------YLTVQESPWHSPLAAAFVKAGEEL 260
DVL YF++ E+ + +H G +++ Q SP + AA++ A E
Sbjct: 118 DVLGYFRRIEN------VTAAWHFVSGDDSGVTGPLHISRQRSP--RSVTAAWLAAAREC 169
Query: 261 GYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
G+ N R GF T RRG+R ST+ A+L+P RKNL + A R++ D
Sbjct: 170 GFAAARPNSPRPEGFCETVVTQRRGARFSTADAYLKPAMRRKNLRVLTGATATRVVIDGD 229
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+AVG+E DG+ I+ A++E++ AGA+NSPQLLM+SGIG +HL +I + +
Sbjct: 230 ----RAVGVEYQSDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDIDTVYH 285
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAF 439
VG NL DH+ + L F V+ F E+ L + Y+L RG LTS G E F
Sbjct: 286 APEVGCNLLDHL-VTVLGFDVEKDSLFAAEKPGQL---ISYLLRRRGMLTSNVG-EAYGF 340
Query: 440 VNTK 443
V ++
Sbjct: 341 VRSR 344
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 21/298 (7%)
Query: 634 RIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGL 692
RIV+ + VL + P L++ SGIG +HL +I + + VG NL DH+ +
Sbjct: 243 RIVYARREVVLCAGAVNSPQ---LLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHL-V 298
Query: 693 GGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEP 752
L F V+ F E+ L+ R T+ + Y ++S+ L P +E
Sbjct: 299 TVLGFDVEKDSLFAAEKPGQLISYLLRR----RGMLTSNVGEAYGFVRSRPELKLPDLEL 354
Query: 753 NYFQHRRDIETLI--EGIRIAFN-VSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIE 809
+ E L+ G + F + + + I L+S +P P+IEP Y ++
Sbjct: 355 IFAPAPFYDEALVPPAGHGVVFGPILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVD 414
Query: 810 --TLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHP 867
++ G+RI ++ Q R LL + + E +L + T+YHP
Sbjct: 415 RAAMMAGLRICARIA-----QARPLRDLLGSIARPRNSTELDEATLELALATCSHTLYHP 469
Query: 868 TSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
TC+MG +D +VVDP+LRV GVDGLRV DAS+MP V G+ +AP+++IGEK AD+
Sbjct: 470 MGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADL 525
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 940 TDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMKQS 991
+D +VVDP+LRV GVDGLRV DAS+MP V G+ +AP+++IGEK AD+ +S
Sbjct: 477 SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIRS 528
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 201/364 (55%), Gaps = 37/364 (10%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGYLQLSELDWKYKT 150
D++V+G GSAGAVVA+RLS +P ++ +EAG D+N +P+ L SE+DW Y T
Sbjct: 6 DYVVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDWDYLT 65
Query: 151 EP-PMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
EP P D G WPRGKVLGGSS +NAM++VRG +DYD+W P W Y
Sbjct: 66 EPQPELD--------GREIYWPRGKVLGGSSSMNAMMWVRGFASDYDEWAARAGPRWSYA 117
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGG---------YLTVQESPWHSPLAAAFVKAGEEL 260
DVL YF++ E+ + +H G +++ Q SP + AA++ A E
Sbjct: 118 DVLGYFRRIEN------VTAAWHFVSGDDSGVTGPLHISRQRSP--RSVTAAWLAAAREC 169
Query: 261 GYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
G+ N R GF T RRG+R ST+ A+L+P RKNL + A R++ D
Sbjct: 170 GFAAARPNSPRPEGFCETVVTQRRGARFSTADAYLKPAMRRKNLRVLTGATATRVVIDGD 229
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+AVG+E DG+ I+ A++E++ AGA+NSPQLLM+SGIG +HL +I + +
Sbjct: 230 ----RAVGVEYQSDGQTRIVYARREVVLCAGAVNSPQLLMLSGIGDRDHLAEHDIDTVYH 285
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAF 439
VG NL DH+ + L F V+ F E+ L + Y+L RG LTS G E F
Sbjct: 286 APEVGCNLLDHL-VTVLGFDVEKDSLFAAEKPGQL---ISYLLRRRGMLTSNVG-EAYGF 340
Query: 440 VNTK 443
V ++
Sbjct: 341 VRSR 344
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 21/298 (7%)
Query: 634 RIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGL 692
RIV+ + VL + P L++ SGIG +HL +I + + VG NL DH+ +
Sbjct: 243 RIVYARREVVLCAGAVNSPQ---LLMLSGIGDRDHLAEHDIDTVYHAPEVGCNLLDHL-V 298
Query: 693 GGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEP 752
L F V+ F E+ L+ R T+ + Y ++S+ L P +E
Sbjct: 299 TVLGFDVEKDSLFAAEKPGQLISYLLRR----RGMLTSNVGEAYGFVRSRPELKLPDLEL 354
Query: 753 NYFQHRRDIETLI--EGIRIAFN-VSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIE 809
+ E L+ G + F + + + I L+S +P P+IEP Y ++
Sbjct: 355 IFAPAPFYDEALVPPAGHGVVFGPILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVD 414
Query: 810 --TLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHP 867
++ G+RI ++ Q R LL + + E +L + T+YHP
Sbjct: 415 RAAMMAGLRICARIA-----QARPLRDLLGSIARPRNSTELDEATLELALATCSHTLYHP 469
Query: 868 TSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
TC+MG +D +VVDP+LRV GVDGLRV DAS+MP V G+ +AP+++IGEK AD+
Sbjct: 470 MGTCRMG--SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADL 525
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 940 TDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMKQS 991
+D +VVDP+LRV GVDGLRV DAS+MP V G+ +AP+++IGEK AD+ +S
Sbjct: 477 SDEASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIRS 528
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 219 bits (557), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 180/312 (57%), Gaps = 25/312 (8%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE---------NEISDIPSLAGYLQL 141
Y ++V+GAGSAG V+A RL+E+P ++LL+EAG + +I +L L
Sbjct: 41 YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCD 100
Query: 142 SELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL 201
+W Y TE G + G WPRG+V GGSS LNAM+YVRG+ DY++W+R
Sbjct: 101 DRYNWCYHTEVQRG-------LDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQ 153
Query: 202 GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELG 261
G GW Y LPYF+K++ + L + Y G L V + PL AF++A ++ G
Sbjct: 154 GARGWDYAHCLPYFRKAQGHE---LGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAG 210
Query: 262 YE-NRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
Y D+NG +Q GF TI G R S + A+L P R NL ET R+LF+ +
Sbjct: 211 YPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGT 270
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+AVG+E +++G+ H A KE+I S GAINSPQLLM+SGIG + L+ L IP++ +
Sbjct: 271 ----RAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCH 326
Query: 381 L-SVGHNLQDHV 391
L VG NLQDH+
Sbjct: 327 LPGVGQNLQDHL 338
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 143/276 (51%), Gaps = 16/276 (5%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF---KKERYQV 712
L++ SGIG + L+ L IP++ +L VG NLQDH+ + + P+T +K +V
Sbjct: 304 LLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIY-IQQACTRPITLHSAQKPLRKV 362
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP---LHYPLIEPNYFQHRRDIETLIEGIR 769
+ L + + +IR Q P + + + H R + T E +
Sbjct: 363 CIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGR-VPTQQEAYQ 421
Query: 770 IAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQK 829
+ + +++L+S NP +P+I+PNY DIE +++ + A A
Sbjct: 422 VHVGPMRGTSVG-WLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAP 480
Query: 830 YNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRV 889
+ + L PG + SD+ + +R + YHP+ TCKMG P+DP AVVDP+ RV
Sbjct: 481 FRGKEL---QPGS---HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRV 534
Query: 890 YGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
GV+ LRV+DASIMP +VSGN NAPTIMI EK AD+
Sbjct: 535 LGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADI 570
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 42/53 (79%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MG +D AVVDP+ RV GV+ LRV+DASIMP +VSGN NAPTIMI EK AD+
Sbjct: 518 MGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADI 570
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKER--YQTL 536
L++ SGIG + L+ L IP++ +L VG NLQDH+ + + P+T + + +
Sbjct: 304 LLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIY-IQQACTRPITLHSAQKPLRKV 362
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ L+++ G + +E F+ ++ G PD+QFHF PS V G
Sbjct: 363 CIGLEWLWKFTGE-GATAHLETGGFIRSQ---PGVPHPDIQFHFLPSQVIDHG 411
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 181/304 (59%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ ++++E GG D +P+ LA + ++ +W Y
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP + R PRGKV+GGSS +N M+YVRG+ D+D+WE LG GW Y
Sbjct: 64 SEPEPN-------LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPY+K+ E + + G L VQ P +PL AF++AG++ G+E D N
Sbjct: 117 DVLPYYKRMEHSHGG---EEGWRGTDGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + + T RG R S + A+LRP R N+ + + A +++ + +A G
Sbjct: 174 GSKQEGFGLMEQTTWRGRRWSAASAYLRPALKRPNVEL-VRCFARKIVIENG----RATG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI R GR ++RA +E+I SA + NSP+LLM+SGIGP HLQ + I + + VG NL
Sbjct: 229 VEIERGGRTEVVRANREVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHM 292
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 141/310 (45%), Gaps = 29/310 (9%)
Query: 627 LSTGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHN 685
+ G +V N + ++ F+ P L++ SGIGP HLQ + I + + VG N
Sbjct: 231 IERGGRTEVVRANREVIVSASSFNSPK---LLMLSGIGPAAHLQEMGIDVKADRPGVGQN 287
Query: 686 LQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQ 740
LQDH + F T Y L + + + + L F L+
Sbjct: 288 LQDH-----MEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFLR 342
Query: 741 SKNPLHYPLIEPNY------FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHY 794
S + P I+ ++ + + ++ + + +N+S S + + L+S +P
Sbjct: 343 SAPGVKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKS---RGDVTLRSSDPKAD 399
Query: 795 PLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWE 854
P+I NY H D E +R+ + AF Y P + P ++ +DE +
Sbjct: 400 PVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRG-PEIQPGE-----KVRTDEEID 453
Query: 855 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAP 914
LR + YHP TCKMG DP AVVDP RV GVDGLRV D+SI P I GN NAP
Sbjct: 454 AFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAP 513
Query: 915 TIMIGEKGAD 924
+IM GEK AD
Sbjct: 514 SIMTGEKAAD 523
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 36/52 (69%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GVDGLRV D+SI P I GN NAP+IM GEK AD
Sbjct: 472 MGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKAAD 523
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 458 IVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLG 516
+V N + ++ F+ P L++ SGIGP HLQ + I + + VG NLQDH+
Sbjct: 239 VVRANREVIVSASSFNSPK---LLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDHMEFY 295
Query: 517 GLTFIVDGPVTFKKER---YQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDW 573
+ PV+ +Q ++ A Q++ +RG L E AF+ + AP G
Sbjct: 296 -FQQVSTKPVSLYSWLPWFWQGVAGA-QWLFFKRG-LGISNQFESCAFLRS--AP-GVKQ 349
Query: 574 PDVQFHFAPSSVNSDG 589
PD+Q+HF P +++ DG
Sbjct: 350 PDIQYHFLPVAISYDG 365
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 181/304 (59%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE +++IEAGG D +P+ LA + + +W Y
Sbjct: 4 DFVIIGSGSAGSALAYRLSEGGKNSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP + R PRGKV+GGSS +N M+YVRG+ D+++WE LG GW Y
Sbjct: 64 SEPEAN-------LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E + + G L VQ + +PL AFV+AG++ G+E D N
Sbjct: 117 DVLPYFKRMEHSHGG---EEGWRGTDGPLHVQRGGFTNPLFQAFVEAGKQAGFETTEDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + + TI G R S + A+L+P R N+ I A R++ + +A G
Sbjct: 174 GSKQEGFGLMEQTIFGGRRWSAANAYLKPALKRDNVKIVYGL-AQRIVIEDG----RATG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI R+GR +++A +E+I SA + NSP+LLM+SGIGP +HLQ + I + + VG NL
Sbjct: 229 VEIERNGRIEVVKANREVIVSASSFNSPKLLMLSGIGPGQHLQDMGIAVKADRPGVGANL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHM 292
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 140/304 (46%), Gaps = 29/304 (9%)
Query: 633 IRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVG 691
I +V N + ++ F+ P L++ SGIGP +HLQ + I + + VG NLQDH
Sbjct: 237 IEVVKANREVIVSASSFNSPK---LLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDH-- 291
Query: 692 LGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQSKNPLH 746
+ F T Y L + + + L F L+S L
Sbjct: 292 ---MEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSRGGLGASNQFEACAFLRSAPGLK 348
Query: 747 YPLIEPNY------FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPN 800
P I+ ++ + + ++ + + +N+S S + + L+S +P P++ N
Sbjct: 349 QPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKS---RGSVSLRSADPKADPVLRFN 405
Query: 801 YFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHF 860
Y H D E +R+ + +AF Y P + P G SDE + LR
Sbjct: 406 YMSHAEDWEKFRHCVRLTREIFGQSAFHDYRG-PEIQPGEGVQ-----SDEEIDAFLREH 459
Query: 861 TFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGE 920
+ YHP TC+MG DP AVVDP+ RV G+DGLRV D+SI P + GN N P+IM GE
Sbjct: 460 LESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTYGNLNGPSIMTGE 519
Query: 921 KGAD 924
K AD
Sbjct: 520 KAAD 523
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 36/52 (69%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP+ RV G+DGLRV D+SI P + GN N P+IM GEK AD
Sbjct: 472 MGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTYGNLNGPSIMTGEKAAD 523
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 456 IRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVG 514
I +V N + ++ F+ P L++ SGIGP +HLQ + I + + VG NLQDH
Sbjct: 237 IEVVKANREVIVSASSFNSPK---LLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDH-- 291
Query: 515 LGGLTFIVDGPVTFKKERYQTL-----SVALQYILNERGPLTSLGGVEGLAFVNTKYAPS 569
+ F T Y L VA L RG L + E AF+ + AP
Sbjct: 292 ---MEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSRGGLGASNQFEACAFLRS--AP- 345
Query: 570 GGDWPDVQFHFAPSSVNSDG 589
G PD+Q+HF P +++ DG
Sbjct: 346 GLKQPDIQYHFLPVAISYDG 365
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 125/306 (40%), Positives = 184/306 (60%), Gaps = 19/306 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ +++IE GG D + +PS L+ L +S DW +
Sbjct: 5 DFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIGPLIQMPSALSIPLNMSLYDWGFA 64
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP LA PRGKV+GGSS +N M+YVRG+ D+D W G GWG+
Sbjct: 65 SEPEPHLGGRVLAT-------PRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFA 117
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ EDN + GG L VQ +PL AFV+AG + G+E D N
Sbjct: 118 DVLPYFKRMEDNDGG---EDGWRGHGGPLHVQRGSRKNPLYGAFVEAGRQAGFELTDDYN 174
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + TI G R S + A+L+P RKN+ + ++ A R++ + +A+G
Sbjct: 175 GSKQEGFGPMEQTISGGRRWSAASAYLKPALKRKNVSL-VKGFARRVIIENQ----RAIG 229
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI + +++A++E+I +A +INSP++LM+SGIGP EHL+ I ++ + VG NL
Sbjct: 230 VEIEAHKQIQVVKARREVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADRPGVGRNL 289
Query: 388 QDHVGL 393
QDH+ L
Sbjct: 290 QDHMEL 295
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 172/391 (43%), Gaps = 54/391 (13%)
Query: 598 GLRDRIFNTLYKPLINAETWTILPLLLRP--------LSTGNGIRIVFENLDKV------ 643
G + F + + + W+ L+P L G R++ EN +
Sbjct: 175 GSKQEGFGPMEQTISGGRRWSAASAYLKPALKRKNVSLVKGFARRVIIENQRAIGVEIEA 234
Query: 644 ------------LVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHV 690
+++ S S IL+LS GIGP EHL+ I ++ + VG NLQDH+
Sbjct: 235 HKQIQVVKARREVIVAASSINSPKILMLS-GIGPAEHLRENGIAVVADRPGVGRNLQDHM 293
Query: 691 GLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQSKNPL 745
L + P+T VL S+ + + + + L F ++S+ +
Sbjct: 294 ELY-IQQESTKPITLNS----VLNPFSKALIGAQWLFFKSGLGATNHFEAAAFVRSRAGV 348
Query: 746 HYPLIEPNYFQH--RRDIETLIEGIRIAFNVS-ASAAFKKYIRLQSKNPLHYPLIEPNYF 802
YP I+ ++ R D + + +V + + + L+S +P P+I NY
Sbjct: 349 DYPDIQYHFIPAAVRYDGKAAAKSHGFQAHVGPMRSKSRGSVTLRSPDPKAKPVIRFNYM 408
Query: 803 QHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTF 862
H D IR+ + +AF + + + PG + SD+ + +R
Sbjct: 409 SHPDDWTEFRHCIRLTREIFGQSAFDAFRGQEI---SPGS---HVQSDDDLDVFIRDHAE 462
Query: 863 TIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 922
+ YHP TCKMG D +VVDP RV GVDGLRV D+SI P + +GN NAP+IM GEK
Sbjct: 463 SAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEKA 522
Query: 923 AD-MTSRYTIRPALMGPATDLEAVVDPRLRV 952
+D + R + P ++ E ++PR +V
Sbjct: 523 SDHILGRTPLAP------SNQEPWINPRWQV 547
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG A D+ +VVDP RV GVDGLRV D+SI P + +GN NAP+IM GEK +D
Sbjct: 473 MGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEKASD 524
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 465 KVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVD 523
+ +++ S S IL+LS GIGP EHL+ I ++ + VG NLQDH+ L +
Sbjct: 245 REVIVAASSINSPKILMLS-GIGPAEHLRENGIAVVADRPGVGRNLQDHMELY-IQQEST 302
Query: 524 GPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFA 581
P+T + + Q++ + G L + E AFV ++ +G D+PD+Q+HF
Sbjct: 303 KPITLNSVLNPFSKALIGAQWLFFKSG-LGATNHFEAAAFVRSR---AGVDYPDIQYHFI 358
Query: 582 PSSVNSDG 589
P++V DG
Sbjct: 359 PAAVRYDG 366
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/304 (41%), Positives = 183/304 (60%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ +L+IEAGG D +P+ LA + + +W Y
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP + R PRGKV+GGSS +N M+YVRG+ D+++WE LG GW Y
Sbjct: 64 SEPEPN-------LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E + + G L VQ + +PL AFV+AG++ G+E D N
Sbjct: 117 DVLPYFKRMEHSHGG---EEGWRGTDGPLHVQRGGFTNPLFRAFVEAGKQAGFETTEDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + + TI G R S + A+L+P RKN+ I + A R++ + +A G
Sbjct: 174 GSKQEGFGLMEQTIFSGRRWSAANAYLKPALKRKNVEI-IYGFAQRIVIEDG----RATG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI R G+ +++A +E+I SA + NSP+LLM+SGIGP EHL+ + I + + VG NL
Sbjct: 229 VEIERGGKIEVVKANREVIVSASSFNSPKLLMLSGIGPGEHLKEMGIEVKADRPGVGANL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHM 292
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 142/310 (45%), Gaps = 29/310 (9%)
Query: 627 LSTGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHN 685
+ G I +V N + ++ F+ P L++ SGIGP EHL+ + I + + VG N
Sbjct: 231 IERGGKIEVVKANREVIVSASSFNSPK---LLMLSGIGPGEHLKEMGIEVKADRPGVGAN 287
Query: 686 LQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQ 740
LQDH + F T Y L + + + L F L+
Sbjct: 288 LQDH-----MEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLR 342
Query: 741 SKNPLHYPLIEPNY------FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHY 794
S L P I+ ++ + + ++ + + +N+S S + + L+S +P
Sbjct: 343 SAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKS---RGSVTLRSPDPKAD 399
Query: 795 PLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWE 854
P++ NY H D E +R+ + AAF Y + PG + + SDE +
Sbjct: 400 PVLRFNYMSHAEDWEKFRHCVRLTRELFGQAAFDDYRGAEI---QPGES---VQSDEEID 453
Query: 855 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAP 914
LR + YHP TCKMG DP AVVDP+ RV GV+ LRV D+SI P + GN N P
Sbjct: 454 AFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYGNLNGP 513
Query: 915 TIMIGEKGAD 924
+IM GEK AD
Sbjct: 514 SIMTGEKAAD 523
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 35/52 (67%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP+ RV GV+ LRV D+SI P + GN N P+IM GEK AD
Sbjct: 472 MGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYGNLNGPSIMTGEKAAD 523
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 14/188 (7%)
Query: 406 FKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSETHQGSNGIRIVFENLDK 465
F R+ + L+ L + G + + + + E +G I +V N +
Sbjct: 188 FSGRRWSAANAYLKPALKRKNVEIIYGFAQRIVIEDGRATGVEIERGGK-IEVVKANREV 246
Query: 466 VLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDG 524
++ F+ P L++ SGIGP EHL+ + I + + VG NLQDH+ +
Sbjct: 247 IVSASSFNSPK---LLMLSGIGPGEHLKEMGIEVKADRPGVGANLQDHMEFY-FQQVSTK 302
Query: 525 PVTFKKER---YQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFA 581
PV+ +Q ++ A Q++L+ +G L + E AF+ + AP G PD+Q+HF
Sbjct: 303 PVSLYSWLPWFWQGVAGA-QWLLS-KGGLGASNQFEACAFLRS--AP-GLKQPDIQYHFL 357
Query: 582 PSSVNSDG 589
P +++ DG
Sbjct: 358 PVAISYDG 365
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 213 bits (541), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 122/304 (40%), Positives = 183/304 (60%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
D+I+IG+GSAG+ +A+RLSE+ ++++E GG D +P+ LA + ++ +W Y
Sbjct: 4 DYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP + R PRGKV+GGSS +N M+YVRG+ D+D+WE+LG GW Y
Sbjct: 64 SEPEP-------HLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E + + G L VQ P +PL AFV+AG++ G+E D N
Sbjct: 117 DVLPYFKRMEHSHGG---EDGWRGTDGPLHVQRGPVKNPLFHAFVEAGKQAGFEMTDDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + + T RG R S + A+L+P R N+ + + A +++ + +A G
Sbjct: 174 GSKQEGFGLMEQTTWRGRRWSAASAYLKPALKRPNVQL-IRCFARKIVIENG----RATG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPI-IKNLSVGHNL 387
+EI R GR +++A +E+I SA + NSP+LLM+SGIGP HL+ L I + + VG NL
Sbjct: 229 VEIERGGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHM 292
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/310 (31%), Positives = 144/310 (46%), Gaps = 29/310 (9%)
Query: 627 LSTGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPI-IKNLSVGHN 685
+ G I +V N + ++ F+ P L++ SGIGP HL+ L I + + VG N
Sbjct: 231 IERGGRIEVVKANREVIVSASSFNSPK---LLMLSGIGPAAHLKDLGIDVKVDRPGVGQN 287
Query: 686 LQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQ 740
LQDH+ I PV+ Y L + + + + + L F L+
Sbjct: 288 LQDHMEFY-FQQISTKPVSL----YSWLPWFWQGVAGAQWLFFKSGLGISNQFEACAFLR 342
Query: 741 SKNPLHYPLIEPNY------FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHY 794
S + P I+ ++ + + T + + +N+S S + + L++ +P
Sbjct: 343 SAPGVKQPDIQYHFLPVAIRYDGKAAANTHGFQVHVGYNLSKS---RGSVTLRASDPKAD 399
Query: 795 PLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWE 854
P+I NY H D E +R+ + AF +Y P + P + +DE +
Sbjct: 400 PVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDQYRG-PEIQPGE-----RVQTDEEID 453
Query: 855 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAP 914
LR + YHP TCKMG DP AVVDP RV GVDGLRV D+SI P + GN NAP
Sbjct: 454 AFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAP 513
Query: 915 TIMIGEKGAD 924
+IM GEK AD
Sbjct: 514 SIMTGEKAAD 523
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 36/52 (69%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GVDGLRV D+SI P + GN NAP+IM GEK AD
Sbjct: 472 MGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSIMTGEKAAD 523
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 456 IRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPI-IKNLSVGHNLQDHVG 514
I +V N + ++ F+ P L++ SGIGP HL+ L I + + VG NLQDH+
Sbjct: 237 IEVVKANREVIVSASSFNSPK---LLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHME 293
Query: 515 LGGLTFIVDGPVTFKKER---YQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGG 571
I PV+ +Q ++ A Q++ + G L E AF+ + AP G
Sbjct: 294 FY-FQQISTKPVSLYSWLPWFWQGVAGA-QWLFFKSG-LGISNQFEACAFLRS--AP-GV 347
Query: 572 DWPDVQFHFAPSSVNSDG 589
PD+Q+HF P ++ DG
Sbjct: 348 KQPDIQYHFLPVAIRYDG 365
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 181/304 (59%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ +L+IEAGG D +P+ LA + + +W Y
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP + R PRGKV+GGSS +N M+YVRG+ D+++WE LG GW Y
Sbjct: 64 SEPEPN-------LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E + + G L VQ + +PL AF++AG++ G+E D N
Sbjct: 117 DVLPYFKRMEHSHGG---EEGWRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTEDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + + TI G R S + A+L+P R N+ I A R++ + +A G
Sbjct: 174 GSKQEGFGLMEQTIFAGRRWSAANAYLKPALKRDNVGIVYGL-ARRIVIENG----RATG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI R GR +++A +E+I SA + NSP+LLM+SGIGP +HL+ + I + + VG NL
Sbjct: 229 VEIERGGRTEVVKANREVIVSASSFNSPKLLMLSGIGPAKHLKEMGIEVKADRPGVGANL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHM 292
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 152/351 (43%), Gaps = 41/351 (11%)
Query: 598 GLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNG------------IRIVFENLDKVLV 645
G R N KP + + I+ L R + NG +V N + ++
Sbjct: 190 GRRWSAANAYLKPALKRDNVGIVYGLARRIVIENGRATGVEIERGGRTEVVKANREVIVS 249
Query: 646 IRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVT 704
F+ P L++ SGIGP +HL+ + I + + VG NLQDH + F T
Sbjct: 250 ASSFNSPK---LLMLSGIGPAKHLKEMGIEVKADRPGVGANLQDH-----MEFYFQQVST 301
Query: 705 FKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQSKNPLHYPLIEPNY----- 754
Y L + + + L F L+S L P I+ ++
Sbjct: 302 KPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLRSAPGLKQPDIQYHFLPVAI 361
Query: 755 -FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIE 813
+ + ++ + + +N+S S + + L+S +P P++ NY H D E
Sbjct: 362 SYDGKAAAKSHGFQVHVGYNLSKS---RGSVTLRSPDPKADPVLRFNYMSHPEDWEKFRH 418
Query: 814 GIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKM 873
+R+ + AF Y P + P G SDE + LR + YHP TCKM
Sbjct: 419 CVRLTREIFGQKAFDAYRG-PEIQPGEGVQ-----SDEQIDSFLREHLESAYHPCGTCKM 472
Query: 874 GPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
G DP AVVDP+ RV GVDGLRV D+SI P + GN N P+IM GEK AD
Sbjct: 473 GAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAAD 523
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 36/52 (69%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP+ RV GVDGLRV D+SI P + GN N P+IM GEK AD
Sbjct: 472 MGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAAD 523
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 458 IVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLG 516
+V N + ++ F+ P L++ SGIGP +HL+ + I + + VG NLQDH
Sbjct: 239 VVKANREVIVSASSFNSPK---LLMLSGIGPAKHLKEMGIEVKADRPGVGANLQDH---- 291
Query: 517 GLTFIVDGPVTFKKERYQTL-----SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGG 571
+ F T Y L VA L +G L + E AF+ + AP G
Sbjct: 292 -MEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLRS--AP-GL 347
Query: 572 DWPDVQFHFAPSSVNSDG 589
PD+Q+HF P +++ DG
Sbjct: 348 KQPDIQYHFLPVAISYDG 365
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/304 (39%), Positives = 181/304 (59%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ ++++E GG D +P+ LA + ++ +W Y
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWGYL 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP + R PRGKV+GGSS +N M+YVRG+ D+++WE LG GW Y
Sbjct: 64 SEPEPN-------LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPY+K+ E + + G L VQ P +PL AF++AG+E G+E D N
Sbjct: 117 DVLPYYKRMEHSHGG---EEGWRGTDGPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + + T RG R S + A+LRP R N+ + + A +++ + +A G
Sbjct: 174 GSKQEGFGLMEQTTWRGRRWSAASAYLRPALKRPNVEL-IRCFARKIVIENG----RATG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPI-IKNLSVGHNL 387
+EI R GR +++A +E+I SA + NSP+LLM+SGIGP HL+ + I + + VG NL
Sbjct: 229 VEIERGGRIEVVKANREVIVSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHM 292
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 142/310 (45%), Gaps = 29/310 (9%)
Query: 627 LSTGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPI-IKNLSVGHN 685
+ G I +V N + ++ F+ P L++ SGIGP HL+ + I + + VG N
Sbjct: 231 IERGGRIEVVKANREVIVSASSFNSPK---LLMLSGIGPAAHLKEMGIDVKVDRPGVGQN 287
Query: 686 LQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQ 740
LQDH + F T Y L + + + + L F L+
Sbjct: 288 LQDH-----MEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFLR 342
Query: 741 SKNPLHYPLIEPNY------FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHY 794
S + P I+ ++ + + ++ + + +N+S S + + L+S +P
Sbjct: 343 SAPGVKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKS---RGNVSLRSSDPKAD 399
Query: 795 PLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWE 854
P+I NY H D E +R+ + AF Y P + P ++ +DE +
Sbjct: 400 PVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRG-PEIQPGE-----KVQTDEEID 453
Query: 855 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAP 914
LR + YHP TCKMG DP AVVDP RV GVDGLRV D+SI P I GN NAP
Sbjct: 454 GFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAP 513
Query: 915 TIMIGEKGAD 924
+IM GEK AD
Sbjct: 514 SIMTGEKSAD 523
Score = 66.6 bits (161), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 36/52 (69%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GVDGLRV D+SI P I GN NAP+IM GEK AD
Sbjct: 472 MGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGEKSAD 523
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 456 IRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPI-IKNLSVGHNLQDHVG 514
I +V N + ++ F+ P L++ SGIGP HL+ + I + + VG NLQDH+
Sbjct: 237 IEVVKANREVIVSASSFNSPK---LLMLSGIGPAAHLKEMGIDVKVDRPGVGQNLQDHME 293
Query: 515 LGGLTFIVDGPVTFKKER---YQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGG 571
+ PV+ +Q ++ A Q++ +RG L E AF+ + AP G
Sbjct: 294 FY-FQQVSTKPVSLYSWLPWFWQGVAGA-QWLFFKRG-LGISNQFESCAFLRS--AP-GV 347
Query: 572 DWPDVQFHFAPSSVNSDG 589
PD+Q+HF P +++ DG
Sbjct: 348 KQPDIQYHFLPVAISYDG 365
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 209 bits (533), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 180/304 (59%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ +L+IEAGG D +P+ LA + + +W Y
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP + R PRGKV+GGSS +N M+YVRG+ D+++WE LG GW Y
Sbjct: 64 SEPEPN-------LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYENR-DIN 268
DVLPYFK+ E + + G L VQ + +PL AF++AG++ G+E D N
Sbjct: 117 DVLPYFKRMEHSHGG---EEGWRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFETTDDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + + TI G R S + A+L+P RKN + M R + + G +A G
Sbjct: 174 GSKQEGFGLMEQTIFSGRRWSAANAYLKPALKRKN--VGMVYGLARKIVIEDG---RATG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI R G+ +++A +E+I SA + NSP+LLM+SGIGP +HL + I + + VG NL
Sbjct: 229 VEIERGGKVEVVKATREVIVSASSFNSPKLLMLSGIGPGQHLNDMGIAVKADRPGVGANL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHM 292
Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 139/310 (44%), Gaps = 29/310 (9%)
Query: 627 LSTGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHN 685
+ G + +V + ++ F+ P L++ SGIGP +HL + I + + VG N
Sbjct: 231 IERGGKVEVVKATREVIVSASSFNSPK---LLMLSGIGPGQHLNDMGIAVKADRPGVGAN 287
Query: 686 LQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQ 740
LQDH + F T Y L + + + L F L+
Sbjct: 288 LQDH-----MEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLR 342
Query: 741 SKNPLHYPLIEPNY------FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHY 794
S L P I+ ++ + + ++ + + +N+S S + + L+S +P
Sbjct: 343 SAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKS---RGSVTLRSPDPKAE 399
Query: 795 PLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWE 854
P++ NY H D E +R+ + AF Y P + P G SDE +
Sbjct: 400 PVLRFNYMSHPEDWEKFRHCVRLTREIFGQTAFDAYRG-PEIQPGEGVQ-----SDEQID 453
Query: 855 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAP 914
LR + YHP TCKMG DP AVVDP+ RV GVDGLRV D+SI P + GN N P
Sbjct: 454 AFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGP 513
Query: 915 TIMIGEKGAD 924
+IM GEK AD
Sbjct: 514 SIMTGEKAAD 523
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 36/52 (69%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP+ RV GVDGLRV D+SI P + GN N P+IM GEK AD
Sbjct: 472 MGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTGEKAAD 523
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 406 FKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSETHQGSNGIRIVFENLDK 465
F R+ + L+ L + G + + + E +G + +V +
Sbjct: 188 FSGRRWSAANAYLKPALKRKNVGMVYGLARKIVIEDGRATGVEIERGGK-VEVVKATREV 246
Query: 466 VLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDG 524
++ F+ P L++ SGIGP +HL + I + + VG NLQDH + F
Sbjct: 247 IVSASSFNSPK---LLMLSGIGPGQHLNDMGIAVKADRPGVGANLQDH-----MEFYFQQ 298
Query: 525 PVTFKKERYQTL-----SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFH 579
T Y L VA L +G L + E AF+ + AP G PD+Q+H
Sbjct: 299 VSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLRS--AP-GLKQPDIQYH 355
Query: 580 FAPSSVNSDG 589
F P +++ DG
Sbjct: 356 FLPVAISYDG 365
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 209 bits (532), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 183/305 (60%), Gaps = 21/305 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
D++++G+GSAG+ +A RLSE+ + +++IEAGG D +P+ LA + + +W Y
Sbjct: 4 DYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWGYL 63
Query: 150 TEP-PMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGY 208
+EP P D+ R PRGKV+GGSS +N ++YVRG+ D+++WE LG GW Y
Sbjct: 64 SEPEPNLDNR--------RITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAY 115
Query: 209 KDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDI 267
DVLPYFK+ E + + G L VQ P +PL AF++AG + G+E D
Sbjct: 116 ADVLPYFKRMEHSHGG---EEGWRGTDGPLHVQRGPVSNPLFHAFIQAGAQAGFELTDDY 172
Query: 268 NGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAV 327
NG +Q GF + + TI G R S + A+L+P R N+ + + A +++ + +AV
Sbjct: 173 NGSKQEGFGLMEQTIHNGRRWSAANAYLKPALKRGNVTL-VNGFARKVIIENG----RAV 227
Query: 328 GIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHN 386
G+EI R GR ++A +E+I SA + NSP+LLM+SGIGP HL+ + I + + VG N
Sbjct: 228 GVEIERRGRVETVKANREVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGAN 287
Query: 387 LQDHV 391
LQDH+
Sbjct: 288 LQDHM 292
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 158/379 (41%), Gaps = 46/379 (12%)
Query: 598 GLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNG------------IRIVFENLDKVLV 645
G R N KP + T++ R + NG + V N + ++
Sbjct: 190 GRRWSAANAYLKPALKRGNVTLVNGFARKVIIENGRAVGVEIERRGRVETVKANREVIVS 249
Query: 646 IRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVT 704
F+ P L++ SGIGP HL+ + I + + VG NLQDH + F T
Sbjct: 250 ASSFNSPK---LLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDH-----MEFYFQQVST 301
Query: 705 FKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQSKNPLHYPLIEPNY----- 754
Y L + + + L F L+S L P I+ ++
Sbjct: 302 KPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLRSAPGLKQPDIQYHFLPVAI 361
Query: 755 -FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIE 813
+ + ++ + +N+S S + + L+S +P P+I NY H D E
Sbjct: 362 SYDGKAAAKSHGFQAHVGYNLSKS---RGNVTLRSADPHDDPVIRFNYMSHPEDWEKFRH 418
Query: 814 GIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKM 873
+R+ + AF + P + P + +DE + LR + YHP TC+M
Sbjct: 419 CVRLTREIFGQKAFDDFRG-PEIQPGE-----NIETDEQIDAFLREHLESAYHPCGTCRM 472
Query: 874 GPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRYTIRP 933
G DP AVVDP RV GV+GLRV D+SI P + GN N P+IM GEK AD T
Sbjct: 473 GDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSIMTGEKAADHILGKTPL- 531
Query: 934 ALMGPATDLEAVVDPRLRV 952
P ++ E V+PR V
Sbjct: 532 ----PRSNQEPWVNPRAAV 546
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 35/52 (67%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GV+GLRV D+SI P + GN N P+IM GEK AD
Sbjct: 472 MGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSIMTGEKAAD 523
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 456 IRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVG 514
+ V N + ++ F+ P L++ SGIGP HL+ + I + + VG NLQDH
Sbjct: 237 VETVKANREVIVSASSFNSPK---LLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDH-- 291
Query: 515 LGGLTFIVDGPVTFKKERYQTL-----SVALQYILNERGPLTSLGGVEGLAFVNTKYAPS 569
+ F T Y L VA L +G L + E AF+ + AP
Sbjct: 292 ---MEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFLRS--AP- 345
Query: 570 GGDWPDVQFHFAPSSVNSDG 589
G PD+Q+HF P +++ DG
Sbjct: 346 GLKQPDIQYHFLPVAISYDG 365
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 204/371 (54%), Gaps = 36/371 (9%)
Query: 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEIS-DIPSLAGYLQLSE-L 144
+ + YD+I++GAGSAG V+A+RLSE+ D +LL+EAGG + I +P+ Y SE
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKY 60
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNP 204
W+++T+ + G R + PRGKVLGGSS +N M+YVRG+ D+D+WE G
Sbjct: 61 AWQFETDAEAD-------LDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAK 113
Query: 205 GWGYKDVLPYFKKSE---DNRNEYL-----LRTPYHSKGGYLTVQESPWHSPLAAAFVKA 256
GW Y+ LPYF+++E D +EY L T G +T+ +PL AF+ A
Sbjct: 114 GWNYQACLPYFRRAENWIDGEDEYRGGDGPLST---CAGNKMTL------NPLYRAFIDA 164
Query: 257 GEELGY-ENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRL 315
G+E GY E D NG +Q GF T++ G R STS A+L + R N + R+
Sbjct: 165 GKEAGYPETSDYNGYQQEGFGPMHMTVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRI 224
Query: 316 LFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNI 375
L ++ +AVG+E G AK E+ISSAG+I S QLL +SGIGP+ L+ +
Sbjct: 225 LLEEK----RAVGVEFELAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGV 280
Query: 376 PIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTLSVALQYILNERGPLTSLG 432
+ +L VG NLQDH+ + + P+T K + + + ++IL +G L +
Sbjct: 281 TPVHHLPGVGQNLQDHLEV-YFQYHCQKPITLNGKLDWFSKGLIGAEWILTRKG-LGATN 338
Query: 433 GVEGLAFVNTK 443
E AF+ ++
Sbjct: 339 HFESCAFIRSR 349
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 131/275 (47%), Gaps = 14/275 (5%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQVL 713
L+ SGIGP+ L+ + + +L VG NLQDH+ + + P+T K + +
Sbjct: 263 LLQLSGIGPKTVLEKAGVTPVHHLPGVGQNLQDHLEVY-FQYHCQKPITLNGKLDWFSKG 321
Query: 714 LCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYF--QHRRDIETLIEGIRIA 771
L +E TN F ++S+ L +P I+ ++ R D + +G
Sbjct: 322 LIGAEWILTRKGLGATNH-FESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQ 380
Query: 772 FNVSASA-AFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKY 830
+V + + + + S NP P I+ NY RD + + IR+ + A A ++
Sbjct: 381 VHVGPNKPESRGRVEIVSANPSDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEF 440
Query: 831 NSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVY 890
+ PG + + W ++ + YHP+ +CKMG DP AV+D RV
Sbjct: 441 RGEEI---QPGINVATDAEIDQW---VKENVESAYHPSCSCKMGADDDPMAVLDEECRVR 494
Query: 891 GVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
G+ LRV+D+S+ P I +GN NAPTIM+ E+ AD+
Sbjct: 495 GITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADL 529
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MG D AV+D RV G+ LRV+D+S+ P I +GN NAPTIM+ E+ AD+
Sbjct: 477 MGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADL 529
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTL 536
L+ SGIGP+ L+ + + +L VG NLQDH+ + + P+T K + +
Sbjct: 263 LLQLSGIGPKTVLEKAGVTPVHHLPGVGQNLQDHLEVY-FQYHCQKPITLNGKLDWFSKG 321
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ ++IL +G L + E AF+ ++ +G WP++Q+HF P+++ DG
Sbjct: 322 LIGAEWILTRKG-LGATNHFESCAFIRSR---AGLKWPNIQYHFLPAAMRYDG 370
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 204/371 (54%), Gaps = 36/371 (9%)
Query: 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEIS-DIPSLAGYLQLSE-L 144
+ + YD+I++GAGSAG V+A+RLSE+ D +LL+EAGG + I +P+ Y SE
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKY 60
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNP 204
W+++T+ + G R + PRGKVLGGSS +N M+YVRG+ D+D+WE G
Sbjct: 61 AWQFETDAEAD-------LDGRRLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAK 113
Query: 205 GWGYKDVLPYFKKSE---DNRNEYL-----LRTPYHSKGGYLTVQESPWHSPLAAAFVKA 256
GW Y+ LPYF+++E D +EY L T G +T+ +PL AF+ A
Sbjct: 114 GWNYQACLPYFRRAENWIDGEDEYRGGDGPLST---CAGNKMTL------NPLYRAFIDA 164
Query: 257 GEELGY-ENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRL 315
G+E GY E D NG +Q GF T++ G R STS A+L + R N + R+
Sbjct: 165 GKEAGYPETSDYNGYQQEGFGPMHMTVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRI 224
Query: 316 LFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNI 375
L ++ +AVG+E G AK E+ISSAG+I S QLL +SGIGP+ L+ +
Sbjct: 225 LLEEK----RAVGVEFELAGELRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGV 280
Query: 376 PIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTLSVALQYILNERGPLTSLG 432
+ +L VG NLQDH+ + + P+T K + + + ++IL +G L +
Sbjct: 281 TPVYHLPGVGQNLQDHLEV-YFQYHCQKPITLNGKLDWFSKGLIGTEWILTRKG-LGATN 338
Query: 433 GVEGLAFVNTK 443
E AF+ ++
Sbjct: 339 HFESCAFIRSR 349
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 132/275 (48%), Gaps = 14/275 (5%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQVL 713
L+ SGIGP+ L+ + + +L VG NLQDH+ + + P+T K + +
Sbjct: 263 LLQLSGIGPKTVLEKAGVTPVYHLPGVGQNLQDHLEVY-FQYHCQKPITLNGKLDWFSKG 321
Query: 714 LCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYF--QHRRDIETLIEGIRIA 771
L +E TN F ++S+ L +P I+ ++ R D + +G
Sbjct: 322 LIGTEWILTRKGLGATNH-FESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQ 380
Query: 772 FNVSASA-AFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKY 830
+V + + + + S NPL P I+ NY RD + + IR+ + A A ++
Sbjct: 381 VHVGPNKPESRGRVEIVSANPLDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEF 440
Query: 831 NSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVY 890
+ PG + + W ++ + YHP+ +CKMG DP AV+D RV
Sbjct: 441 RGEEI---QPGINVATDAEIDQW---VKENVESAYHPSCSCKMGADDDPMAVLDEECRVR 494
Query: 891 GVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
G+ LRV+D+S+ P I +GN NAPTIM+ E+ AD+
Sbjct: 495 GITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADL 529
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MG D AV+D RV G+ LRV+D+S+ P I +GN NAPTIM+ E+ AD+
Sbjct: 477 MGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMVAERAADL 529
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTL 536
L+ SGIGP+ L+ + + +L VG NLQDH+ + + P+T K + +
Sbjct: 263 LLQLSGIGPKTVLEKAGVTPVYHLPGVGQNLQDHLEVY-FQYHCQKPITLNGKLDWFSKG 321
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ ++IL +G L + E AF+ ++ +G WP++Q+HF P+++ DG
Sbjct: 322 LIGTEWILTRKG-LGATNHFESCAFIRSR---AGLKWPNIQYHFLPAAMRYDG 370
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 197/358 (55%), Gaps = 21/358 (5%)
Query: 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPSLAGYLQLSELD 145
+ +D+IV+G GSAG V+A RLSENP ++ LIEAG D + + +P +
Sbjct: 1 MTSGFDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMTTGPHT 60
Query: 146 WKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPG 205
W TEP + + V +G++LGG S +NA ++ RG+ +D+D+W G G
Sbjct: 61 WDLLTEPQKHANNRQIPYV-------QGRILGGGSSINAEVFTRGHPSDFDRWAAEGADG 113
Query: 206 WGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-N 264
W ++DV YF +SE N + +H G L V +P + AFV++ +E+G N
Sbjct: 114 WSFRDVQKYFIRSEGNA---VFSGTWHGTNGPLGVSNLAEPNPTSRAFVQSCQEMGLPYN 170
Query: 265 RDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVP 324
D NG Q G I Q TIR RCST+ +LRP RKNL + L+++F+ +
Sbjct: 171 PDFNGASQEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVFNGT---- 226
Query: 325 KAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SV 383
+A G++ + +G + A +EI+ +AGAI +P+L+M+SG+GP HL+ IP++++L V
Sbjct: 227 RATGVQYIANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPGV 286
Query: 384 GHNLQDHVGLGGLTFIVDGPVTFKKER--YQTLSVALQYILNERGPLTSLGGVEGLAF 439
G NLQDH G+ + + +F K R + L L+Y + GP+ S VEG AF
Sbjct: 287 GENLQDHFGV-DIVAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVAS-NVVEGGAF 342
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 62/299 (20%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
L++ SG+GP HL+ IP++++L VG NLQDH G+
Sbjct: 260 LMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDHFGVD---------------------I 298
Query: 716 LSERTDDSTYSTYTNTLFPRYIRLQ----SKNPLHYPLIEPNYFQHRRDIETLIEGIRIA 771
++E D ++ Y + + L+ P+ ++E F + D + + ++
Sbjct: 299 VAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVASNVVEGGAFWYS-DPSSGVPDLQFH 357
Query: 772 FNVSASAAF-----------------------KKYIRLQSKNPLHYPLIEPNYFQHRRDI 808
F A A + +RL+S +P P+++PN+ D+
Sbjct: 358 FLAEAGAEAGVTSVPKGASGITLNSYVLRPKSRGTVRLRSADPRVNPMVDPNFLGDPADL 417
Query: 809 ETLIEGIRIAFNVSASAAFQKYNSRPLL--TPMPGCAMFELFSDEYWECSLRHFTFTIYH 866
ET EG+R+++ + + + +K+ + P M+ ++ E+ S YH
Sbjct: 418 ETSAEGVRLSYEMFSQPSLEKHIRKTCFFSGKQPTMQMYRDYAREHGRTS--------YH 469
Query: 867 PTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
PT TCKMG D +VVDPRL+V+G++G+R+ D+S+MP ++ N NA TIMI E+ AD
Sbjct: 470 PTCTCKMG--RDDMSVVDPRLKVHGLEGIRICDSSVMPSLLGSNTNAATIMISERAADF 526
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMKQ 990
D +VVDPRL+V+G++G+R+ D+S+MP ++ N NA TIMI E+ AD Q
Sbjct: 479 DDMSVVDPRLKVHGLEGIRICDSSVMPSLLGSNTNAATIMISERAADFIQ 528
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 8/104 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKER--YQTL 536
L++ SG+GP HL+ IP++++L VG NLQDH G+ + + +F K R + L
Sbjct: 260 LMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDHFGV-DIVAELKTDESFDKYRKLHWML 318
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHF 580
L+Y + GP+ S VEG AF + PS G PD+QFHF
Sbjct: 319 WAGLEYTMFRSGPVAS-NVVEGGAFWYSD--PSSG-VPDLQFHF 358
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 197/366 (53%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+PD +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYFKK+E + YH G ++V S P +PL A V AG + GY
Sbjct: 117 ENWTYLDCLPYFKKAE---TRDVGPNDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L + R NL I A R+LFD
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKARPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IP++ +
Sbjct: 234 ----RASGVTYLRGSERATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKALDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 136/278 (48%), Gaps = 24/278 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ K Q
Sbjct: 267 LLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
+Y R L P C +D+ + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRYRGREL-NPGADCK-----TDKELDAFVRARAETAFHPSCSCKMG--YDDMAVVDEE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 493 GRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 198/366 (54%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+PD +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYFKK+E + YH G ++V S P +PL A V AG + GY
Sbjct: 117 ENWTYLDCLPYFKKAE---TRDVGPNDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L ++R NL I A R+LFD
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKVRPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IP++ +
Sbjct: 234 ----RASGVTYLRGSERATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 24/278 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ K Q
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
+Y R L P C SD+ + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRYRGREL-NPGADCK-----SDKELDAFVRARAETAFHPSCSCKMG--YDDMAVVDEE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 493 GRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 198/366 (54%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+PD +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYFKK+E + YH G ++V S P +PL A V AG + GY
Sbjct: 117 ENWTYLDCLPYFKKAE---TRDVGPNDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L ++R NL I A R+LFD
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKVRPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IP++ +
Sbjct: 234 ----RASGVTYLRGSERATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 24/278 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ K Q
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
+Y R L P C SD+ + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRYRGREL-NPGADCK-----SDKELDAFVRARAETAFHPSCSCKMG--YDDMAVVDEE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 493 GRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 198/366 (54%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+PD +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYFKK+E + YH G ++V S P +PL A V AG + GY
Sbjct: 117 ENWTYLDCLPYFKKAE---TRDVGPNDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L ++R NL I A R+LFD
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKVRPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IP++ +
Sbjct: 234 ----RASGVTYLRGSERATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 24/278 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ K Q
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
+Y R L P C SD+ + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRYRGREL-NPGADCK-----SDKELDAFVRARAETAFHPSCSCKMG--YDDMAVVDEE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 493 GRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 203 bits (516), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 198/366 (54%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+PD +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYFKK+E + YH G ++V S P +PL A V AG + GY
Sbjct: 117 ENWTYLDCLPYFKKAE---TRDVGPNDYHGGNGPVSVTTSKPGVNPLFEAMVDAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L ++R NL I A R+LFD
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKVRPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IP++ +
Sbjct: 234 ----RASGVTYLRGSERATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 131/292 (44%), Gaps = 52/292 (17%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLG---------------------- 693
L+ SG+GP L+ L+IP++ +L VG NLQDH+ +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 694 -GLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEP 752
GL ++++G ++ + R DD + P I N IE
Sbjct: 327 IGLEWMLNGTGLGASNHFEAGGFIRTR-DDDLWPNIQYHFLPVAINYNGSN-----AIEM 380
Query: 753 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLI 812
+ FQ A S + + ++L+S++P +P I NY D
Sbjct: 381 HGFQ--------------AHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFR 426
Query: 813 EGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCK 872
+ IR + A +Y R L P C SD+ + +R T +HP+ +CK
Sbjct: 427 DAIRATREIMRQPALDRYRGREL-NPGADCK-----SDKELDAFVRARAETAFHPSCSCK 480
Query: 873 MGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
MG D AVVD RV+G++GLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 481 MG--YDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G++GLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTL 536
L+ SG+GP L+ L+IP++ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDLWPNIQYHFLPVAINYNGSNAI 378
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 203 bits (516), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 175/309 (56%), Gaps = 19/309 (6%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGYLQLSE-LDWKY 148
YD+I++GAGSAG V+ANRLS +P ++ L+EAG D N + +P L S+ L+W +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 149 KTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGY 208
+T P + L WPRGK LGGSS +NAM+Y+RG++ DY WE+ G WG+
Sbjct: 62 QTAPQQHLNERSLF-------WPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGW 114
Query: 209 KDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDI 267
K FKK E N+ ++ YH G L V + +PL+ +FV+AG E N D
Sbjct: 115 KRAFALFKKLE--HNQRFDKSNYHGTDGELAVSDLKDLNPLSKSFVQAGMEAKISFNGDF 172
Query: 268 NGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAV 327
NG Q G Q T + G R S+++AFL + R NL I E A ++LF+ KAV
Sbjct: 173 NGAHQEGVGFYQVTQKHGQRWSSARAFLHDVIDRPNLDIITEAHATKVLFEDR----KAV 228
Query: 328 GIEILRDGRKHIIRAKK--EIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVG 384
G+ ++ ++ E+I S GA+N+PQLLM+SG+G L+ I ++ +L VG
Sbjct: 229 GVSYIQKNMHQQVKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVG 288
Query: 385 HNLQDHVGL 393
NLQDH+ +
Sbjct: 289 KNLQDHLDI 297
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 39/290 (13%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLG-------------GLTFIVDGP 702
L++ SG+G L+ I ++ +L VG NLQDH+ + +FI G
Sbjct: 261 LLMLSGVGAAAELKEHGIALVHDLPEVGKNLQDHLDITLMCAANSRTPIGVAFSFIPRGL 320
Query: 703 VTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYFQ-HRRDI 761
V + + +R T + + F + + + L + + P Y + H R I
Sbjct: 321 VG-------LFSYIFKRKGFLTSNVAESGGFVKSSPERDRPNLQFHFL-PTYLKDHGRKI 372
Query: 762 ETLIEGIRIAFNVSASAAFKKY---IRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIA 818
+ + + K I L+S NP+ PLI+PNY DI+T+I GI+I
Sbjct: 373 -----AVGYGYTLHICDLLPKSRGRIGLKSANPMDDPLIDPNYLSDPEDIKTMIAGIKIG 427
Query: 819 FNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTD 878
+ + + K+ R ++ PG A + SD+ +R TIYHP TC+MG D
Sbjct: 428 RAIFDAPSMAKHFKREIV---PGPA---VTSDDEIVADIRSRAETIYHPVGTCRMG--KD 479
Query: 879 PEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSR 928
P +VVDP L+V G+ +RV+DASIMP +V+GN NAPTIMI E A++ R
Sbjct: 480 PASVVDPCLQVRGLRNIRVVDASIMPNLVAGNTNAPTIMIAENAAEIIVR 529
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 37/48 (77%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
D +VVDP L+V G+ +RV+DASIMP +V+GN NAPTIMI E A++
Sbjct: 479 DPASVVDPCLQVRGLRNIRVVDASIMPNLVAGNTNAPTIMIAENAAEI 526
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 29/124 (23%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLG-------------GLTFIVDGP 525
L++ SG+G L+ I ++ +L VG NLQDH+ + +FI G
Sbjct: 261 LLMLSGVGAAAELKEHGIALVHDLPEVGKNLQDHLDITLMCAANSRTPIGVAFSFIPRGL 320
Query: 526 VTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSV 585
V YI +G LTS E FV K +P D P++QFHF P+ +
Sbjct: 321 VGL-----------FSYIFKRKGFLTS-NVAESGGFV--KSSPER-DRPNLQFHFLPTYL 365
Query: 586 NSDG 589
G
Sbjct: 366 KDHG 369
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 202 bits (515), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 179/304 (58%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPS-LAGYLQLSELDWKYK 149
DF++IG+GSAG+ +A+RLSE+ ++++E GG D +P+ LA + + +W Y
Sbjct: 4 DFVIIGSGSAGSAMASRLSEDGKHTVIVLEFGGSDVGPFIQMPAALAWPMSMDRYNWGYL 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP + R PRGKV+GGSS +N M+YVRG+ D+++WE LG GW Y
Sbjct: 64 SEPEP-------QLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E + + G L V+ +PL AF++AG++ G+E D N
Sbjct: 117 DVLPYFKRMEHSHGG---EEGWRGTDGPLHVRRGDARNPLFHAFIEAGKQAGFEATEDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
G +Q GF + + T G R S + A+L+P R N+ + + A +++ + +A G
Sbjct: 174 GGKQEGFGLMEQTTWMGRRWSAATAYLKPALKRPNVEL-IRCFARKVVIENG----RATG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPI-IKNLSVGHNL 387
+EI R G+ I++A E+I SA + NSP+LLM+SGIGP +HLQ + I + I VG NL
Sbjct: 229 VEIERGGKIEIVKANSEVIVSASSFNSPKLLMLSGIGPGQHLQEMGIEVKIDRPGVGANL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHM 292
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 142/310 (45%), Gaps = 29/310 (9%)
Query: 627 LSTGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPI-IKNLSVGHN 685
+ G I IV N + ++ F+ P L++ SGIGP +HLQ + I + I VG N
Sbjct: 231 IERGGKIEIVKANSEVIVSASSFNSPK---LLMLSGIGPGQHLQEMGIEVKIDRPGVGAN 287
Query: 686 LQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTY-----TNTLFPRYIRLQ 740
LQDH + F Y L + + + + T+ F L+
Sbjct: 288 LQDH-----MEFYFQQTSLKPVSLYSWLPWYMQGIVGAQWMFFKSGLGTSNQFEACAFLR 342
Query: 741 SKNPLHYPLIEPNY------FQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHY 794
S + P I+ ++ + + ++ + +N+S S + + L+S +P
Sbjct: 343 SAPGVKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSKS---RGAVTLRSSDPKAD 399
Query: 795 PLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWE 854
P+I NY H D E +R+ + AF Y P + P P ++ +D+ +
Sbjct: 400 PVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDYRG-PEIQPGP-----DVQTDDQID 453
Query: 855 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAP 914
LR + YHP TCKMG DP AVVDP RV GV+GLRV D+SI P + GN N P
Sbjct: 454 AFLREHLESAYHPCGTCKMGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGNLNGP 513
Query: 915 TIMIGEKGAD 924
+IM GEK AD
Sbjct: 514 SIMTGEKAAD 523
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 35/52 (67%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GV+GLRV D+SI P + GN N P+IM GEK AD
Sbjct: 472 MGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGNLNGPSIMTGEKAAD 523
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 456 IRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPI-IKNLSVGHNLQDHVG 514
I IV N + ++ F+ P L++ SGIGP +HLQ + I + I VG NLQDH+
Sbjct: 237 IEIVKANSEVIVSASSFNSPK---LLMLSGIGPGQHLQEMGIEVKIDRPGVGANLQDHME 293
Query: 515 LGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGD 572
+ PV+ Y V Q++ + G L + E AF+ + AP G
Sbjct: 294 FYFQQTSLK-PVSLYSWLPWYMQGIVGAQWMFFKSG-LGTSNQFEACAFLRS--AP-GVK 348
Query: 573 WPDVQFHFAPSSVNSDG 589
PD+Q+HF P +++ DG
Sbjct: 349 QPDIQYHFLPVAISYDG 365
>sp|A9AMZ9|BETA_BURM1 Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=betA PE=3 SV=1
Length = 566
Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 198/366 (54%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+P+ +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHQGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYFKK+E + YH G ++V S P +PL A V+AG + GY
Sbjct: 117 ENWTYLDCLPYFKKAE---TRDIGPNDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L + R NL I A R+LFD
Sbjct: 174 PRTEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKTRPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IPI+ +
Sbjct: 234 ----RASGVTYLRGNERATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 138/278 (49%), Gaps = 24/278 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP L+ L+IPI+ +L VG NLQDH+ + + + PV+ K Q
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
+Y R L PG +L SD+ + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRYRGREL---NPGA---DLKSDKELDAFVRARAETAFHPSCSCKMG--YDDMAVVDNE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G++GLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 493 GRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G++GLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDNEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP L+ L+IPI+ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 203/371 (54%), Gaps = 36/371 (9%)
Query: 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEIS-DIPSLAGY-LQLSEL 144
+ + YD+I++GAGSAG V+A+RLSE+ ++LL+EAGG + I +P+ Y + +
Sbjct: 1 MQQHYDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMPTALSYPMNTEKY 60
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNP 204
W+++T G + G + + PRGKVLGGSS +N M+YVRG+ D+D+WE G
Sbjct: 61 AWQFETVAEEG-------LDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAK 113
Query: 205 GWGYKDVLPYFKKSED---NRNEYLLRTPYHSKGGYLTVQESPWH----SPLAAAFVKAG 257
GW Y+ LPYF+K+E +EY +GG V + +PL AF++AG
Sbjct: 114 GWNYQACLPYFRKAETWTGGADEY--------RGGSGPVGTCNGNDMKLNPLYQAFIEAG 165
Query: 258 EELGY-ENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLL 316
++ GY E +D NG +Q GF T+ +G R STS A+L + R N + A R+L
Sbjct: 166 KDAGYPETQDYNGYQQEGFGPMHMTVDKGVRASTSNAYLSRAKKRSNFTLMKGVTAHRIL 225
Query: 317 FDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIP 376
+ KAVGIE + G A KE++SSAG+I S QLL +SGIGP+ L I
Sbjct: 226 LEGK----KAVGIEFEQSGEIKQCFANKEVVSSAGSIGSVQLLQLSGIGPKTVLDKAGIE 281
Query: 377 IIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKERYQTLSVAL---QYILNERGPLTSLG 432
+ L VG NLQDH+ + + P+T + +S L ++IL +G L +
Sbjct: 282 VKHTLEGVGKNLQDHLEV-YFQYHCKQPITLNS-KLGLISKGLIGTEWILTRKG-LGATN 338
Query: 433 GVEGLAFVNTK 443
E AF+ ++
Sbjct: 339 HFESCAFIRSR 349
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 138/302 (45%), Gaps = 23/302 (7%)
Query: 633 IRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVG 691
I+ F N K +V S S +L LS GIGP+ L I + L VG NLQDH+
Sbjct: 242 IKQCFAN--KEVVSSAGSIGSVQLLQLS-GIGPKTVLDKAGIEVKHTLEGVGKNLQDHLE 298
Query: 692 LGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQSKNPLH 746
+ + P+T + L +S+ + + L F ++S+ L
Sbjct: 299 VY-FQYHCKQPITLNSK----LGLISKGLIGTEWILTRKGLGATNHFESCAFIRSREGLK 353
Query: 747 YPLIEPNYF--QHRRDIETLIEGIRIAFNVSASA-AFKKYIRLQSKNPLHYPLIEPNYFQ 803
P I+ ++ R D +G +V + + + + S NP P IE NY
Sbjct: 354 SPNIQFHFLPAAMRYDGRAAFDGHGFQVHVGPNKPESRGSVEVVSANPNDKPKIEFNYIS 413
Query: 804 HRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFT 863
+D + + IR+ + A + + PG + SDE ++ +
Sbjct: 414 TEQDKQDWRDCIRLTREILNQPAMDAFRGEEI---QPG---LNITSDEAIGEWVKQNVES 467
Query: 864 IYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGA 923
YHP+ +CKMG DP AV++ +V G++GLRV+D+SI P I +GN NAPTIM+ E+ A
Sbjct: 468 AYHPSCSCKMGSNDDPMAVLNEACQVRGIEGLRVVDSSIFPTIPNGNLNAPTIMVAERAA 527
Query: 924 DM 925
DM
Sbjct: 528 DM 529
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 38/53 (71%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MG D AV++ +V G++GLRV+D+SI P I +GN NAPTIM+ E+ ADM
Sbjct: 477 MGSNDDPMAVLNEACQVRGIEGLRVVDSSIFPTIPNGNLNAPTIMVAERAADM 529
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 453 SNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNLS-VGHNLQD 511
S I+ F N K +V S S +L LS GIGP+ L I + L VG NLQD
Sbjct: 239 SGEIKQCFAN--KEVVSSAGSIGSVQLLQLS-GIGPKTVLDKAGIEVKHTLEGVGKNLQD 295
Query: 512 HVGLGGLTFIVDGPVTFKKERYQTLSVAL---QYILNERGPLTSLGGVEGLAFVNTKYAP 568
H+ + + P+T + +S L ++IL +G L + E AF+ ++
Sbjct: 296 HLEVY-FQYHCKQPITLNS-KLGLISKGLIGTEWILTRKG-LGATNHFESCAFIRSR--- 349
Query: 569 SGGDWPDVQFHFAPSSVNSDG 589
G P++QFHF P+++ DG
Sbjct: 350 EGLKSPNIQFHFLPAAMRYDG 370
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/358 (36%), Positives = 200/358 (55%), Gaps = 23/358 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGY-LQLSELDWKYK 149
DF++IG+GSAG+ +A RLSEN + +++IE G D + +P+ + + + DW +
Sbjct: 4 DFVIIGSGSAGSAMAYRLSENGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFS 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP L PRGKVLGGSS +N M+YVRG+ D+D W + G GW Y
Sbjct: 64 SEPEPHIGGRSLVT-------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E+++ + + G L VQ +PL AFV+AG + G+E D N
Sbjct: 117 DVLPYFKRMENSQGG---QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
GE+Q GF + TI G R S + A+L+P R N+ + ++ A +++ + +AVG
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI IRA++E+I +A +INSP+LLM+SGIGP HL+ I ++ + VG NL
Sbjct: 229 VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNL 288
Query: 388 QDHVGLGGLTFIVDGPVTFKKE--RYQTLSVALQYILNERGPLTSLGGVEGLAFVNTK 443
QDH+ + + P+T E + + ++++L + G + E AFV +K
Sbjct: 289 QDHLEV-YIQQECTQPITLYSELNLFSKARIGVEWLLFKTGD-GATNHFESAAFVRSK 344
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 176/411 (42%), Gaps = 51/411 (12%)
Query: 551 TSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKP 610
S GG EG N G + FH + + G E G + F + +
Sbjct: 127 NSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQT 186
Query: 611 LINAETWT-----ILPLLLRP---LSTGNGIRIVFENLDKV------------------L 644
+ N W+ + P L RP L G +IV E V +
Sbjct: 187 IHNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGKRAVGVEIEAGRTFSTIRARREV 246
Query: 645 VIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPV 703
+I S S +L+LS GIGP HL+ I ++ + VG NLQDH+ + + P+
Sbjct: 247 IIAASSINSPKLLMLS-GIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQPI 304
Query: 704 T-------FKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYF- 755
T F K R V L +T D + + + F R SK + YP I+ ++
Sbjct: 305 TLYSELNLFSKARIGVEWLLF-KTGDGATNHFESAAFVR-----SKAGVEYPDIQYHFLP 358
Query: 756 -QHRRDIETLIEGIRIAFNVS-ASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIE 813
R D + + +V + + + L+S NP P+I+ NY H D
Sbjct: 359 VAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRH 418
Query: 814 GIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKM 873
+R+ + AAF Y + PG + +D+ + +R + +HP TCKM
Sbjct: 419 CVRLTREIFGQAAFDPYRGAEI---QPGA---HVQTDDEIDNFIREHVESAFHPCGTCKM 472
Query: 874 GPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
G DP AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 473 GAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 37/52 (71%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTL 536
L++ SGIGP HL+ I ++ + VG NLQDH+ + + P+T E +
Sbjct: 258 LLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEV-YIQQECTQPITLYSELNLFSKA 316
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ ++++L + G + E AFV +K +G ++PD+Q+HF P ++ DG
Sbjct: 317 RIGVEWLLFKTGD-GATNHFESAAFVRSK---AGVEYPDIQYHFLPVAIRYDG 365
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 198/366 (54%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+P+ +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHQGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYF+K+E + YH G ++V S P +PL A V+AG + GY
Sbjct: 117 ERWTYLDCLPYFRKAE---TRDVGPNDYHGGDGPVSVTTSKPGANPLFEAMVEAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L + R NL I A R+LFD
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKTRPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IPI+ +
Sbjct: 234 ----RASGVAYLRGSERATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 136/278 (48%), Gaps = 24/278 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP L+ L+IPI+ +L VG NLQDH+ + + + PV+ K Q
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
+Y R L P C SD+ + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRYRGREL-NPGADCR-----SDKELDTFVRARAETAFHPSCSCKMG--YDDMAVVDDE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 493 GRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDDEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP L+ L+IPI+ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|Q0B711|BETA_BURCM Choline dehydrogenase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=betA PE=3 SV=1
Length = 566
Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 197/366 (53%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+P+ +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYFKK+E + YH G ++V S P +PL A V AG + GY
Sbjct: 117 ENWTYLDCLPYFKKAE---TRDVGPNDYHGGNGPVSVTTSKPGANPLFEAMVDAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L + R NL I A R+LFD
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKGRPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IPI+ +
Sbjct: 234 ----RASGVTYLRGSERASAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 24/278 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP L+ L+IPI+ +L VG NLQDH+ + + + PV+ K Q
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
+Y R L P C SD+ + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRYRGREL-NPGADCK-----SDKELDTFVRARAETAFHPSCSCKMG--YDDMAVVDEE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G++GLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 493 GRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G++GLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP L+ L+IPI+ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 200 bits (508), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 175/304 (57%), Gaps = 19/304 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGY-LQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ + +++IE G D + +P+ + + + DW +
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFS 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
TEP L PRGKVLGGSS +N M+YVRG+ DYD W G GW Y
Sbjct: 64 TEPEPHIGGRSLVT-------PRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E++ + + G L +Q +PL AFV+AG E G+E D N
Sbjct: 117 DVLPYFKRMENSSGG---QEGWRGTNGPLYIQRGKRDNPLFHAFVEAGHEAGFEVTEDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
GE+Q GF + TI G R S + A+L+P R N+ + ++ A +++ + +AVG
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGLARKIVLEGK----RAVG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI IRA++E+I +A +INSP+LLM+SGIGP L+ I ++ + VG NL
Sbjct: 229 VEIEAGRSFSTIRARREVIIAASSINSPKLLMLSGIGPAAQLKEHGIEVVADRPGVGQNL 288
Query: 388 QDHV 391
QDH+
Sbjct: 289 QDHL 292
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 122/443 (27%), Positives = 183/443 (41%), Gaps = 64/443 (14%)
Query: 551 TSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKP 610
S GG EG N G + FH + + G E G + F + +
Sbjct: 127 NSSGGQEGWRGTNGPLYIQRGKRDNPLFHAFVEAGHEAGFEVTEDYNGEKQEGFGPMEQT 186
Query: 611 LINAETWT-----ILPLLLRP---LSTGNGIRIVFENLDKV------------------L 644
+ N W+ + P L RP L G +IV E V +
Sbjct: 187 IHNGRRWSAANAYLKPALKRPNVKLVKGLARKIVLEGKRAVGVEIEAGRSFSTIRARREV 246
Query: 645 VIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPV 703
+I S S +L+LS GIGP L+ I ++ + VG NLQDH L +
Sbjct: 247 IIAASSINSPKLLMLS-GIGPAAQLKEHGIEVVADRPGVGQNLQDH-----LEVYIQQEC 300
Query: 704 TFKKERYQVLLCLSE----------RTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPN 753
T Y L S+ +T D + + + F L+SK + YP I+ +
Sbjct: 301 TQPITLYSKLNLFSKAKIGAEWLFFKTGDGATNHFESAAF-----LRSKAGVEYPDIQYH 355
Query: 754 YF--QHRRDIETLIEGIRIAFNVS-ASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIET 810
+ R D + + +V + + + L+S NP P+I+ NY H D
Sbjct: 356 FLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWAD 415
Query: 811 LIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTST 870
+R+ + AAF Y + PG + SD+ + ++ + +HP T
Sbjct: 416 FRHCVRLTREIFGQAAFNPYRGAEI---QPGA---HVQSDDEIDNFIKEHVESAFHPCGT 469
Query: 871 CKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD-MTSRY 929
CKMG DP AVVD RV GV+GLRV D+SI P I +GN N P+IM+GEK +D + R
Sbjct: 470 CKMGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHILGRT 529
Query: 930 TIRPALMGPATDLEAVVDPRLRV 952
+ +D E ++PR +V
Sbjct: 530 PL------ARSDQEPWINPRWQV 546
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 36/52 (69%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVD RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 472 MGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 196/366 (53%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R +D+I+ GAGSAG V+A RL+E+PD +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REFDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYF+K+E + YH G ++V S P +PL A V+AG + GY
Sbjct: 117 EDWTYLDCLPYFRKAE---TRDVGPNDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ RG R ST++ +L R R NL I A R+LF
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDQARARPNLEIVTHALADRILFSGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ L + A++E++ +GAI SPQLL SG+GP E L+ L+IP++ +
Sbjct: 234 ----RATGVTFLHGSARVTAHARREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + F PV+ + + + L +++N G L + E
Sbjct: 290 LPGVGRNLQDHLEM-YIQFECKEPVSLYPALKWWNQPKIGLDWMINGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 133/292 (45%), Gaps = 52/292 (17%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLG---------------------- 693
L+ SG+GP E L+ L+IP++ +L VG NLQDH+ +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 694 -GLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEP 752
GL ++++G ++ + R DD + P I N IE
Sbjct: 327 IGLDWMINGTGLGASNHFEAGGFIRTR-DDDLWPNIQYHFLPVAINYNGSN-----AIEM 380
Query: 753 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLI 812
+ FQ A S + + ++L+S++P +P I NY D
Sbjct: 381 HGFQ--------------AHVGSMRSPSRGRVKLKSRDPNAHPSILFNYMAEALDWREFR 426
Query: 813 EGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCK 872
+ IR + A ++ R L PG +L SD + +R T +HP+ +CK
Sbjct: 427 DAIRATREIMHQPALDRFRGREL---NPGA---DLKSDNELDAFVRARAETAFHPSCSCK 480
Query: 873 MGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
MG D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 481 MG--YDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP E L+ L+IP++ +L VG NLQDH+ + + F PV+ + +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMY-IQFECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L +++N G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLDWMINGTG-LGASNHFEAGGFIRTR---DDDLWPNIQYHFLPVAINYNGSNAI 378
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 199 bits (506), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 200/358 (55%), Gaps = 23/358 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGY-LQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ + +++IE G D + +P+ + + + DW +
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFS 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP L PRGKVLGGSS +N M+YVRG+ D+D W + G GW Y
Sbjct: 64 SEPEPHIGGRSLVT-------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E+++ + + G L VQ +PL AFV+AG + G+E D N
Sbjct: 117 DVLPYFKRMENSQGG---QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVADDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
GE+Q GF + TI G R S + A+L+P R N+ + ++ A +++ + +AVG
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI IRA++E+I +A +INSP+LLM+SGIGP HL+ I ++ + VG NL
Sbjct: 229 VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNL 288
Query: 388 QDHVGLGGLTFIVDGPVTFKKE--RYQTLSVALQYILNERGPLTSLGGVEGLAFVNTK 443
QDH+ + + P+T E + + ++++L + G + E AFV +K
Sbjct: 289 QDHLEV-YIQQECTQPITLYSELNLFSKARIGVEWLLFKTGD-GATNHFESAAFVRSK 344
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 176/411 (42%), Gaps = 51/411 (12%)
Query: 551 TSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKP 610
S GG EG N G + FH + + G E G + F + +
Sbjct: 127 NSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVADDYNGEKQEGFGPMEQT 186
Query: 611 LINAETWT-----ILPLLLRP---LSTGNGIRIVFENLDKV------------------L 644
+ N W+ + P L RP L G +IV E V +
Sbjct: 187 IHNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGKRAVGVEIEAGRTFSTIRARREV 246
Query: 645 VIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPV 703
+I S S +L+LS GIGP HL+ I ++ + VG NLQDH+ + + P+
Sbjct: 247 IIAASSINSPKLLMLS-GIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQPI 304
Query: 704 T-------FKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYF- 755
T F K R V L +T D + + + F R SK + YP I+ ++
Sbjct: 305 TLYSELNLFSKARIGVEWLLF-KTGDGATNHFESAAFVR-----SKAGVEYPDIQYHFLP 358
Query: 756 -QHRRDIETLIEGIRIAFNVS-ASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIE 813
R D + + +V + + + L+S NP P+I+ NY H D
Sbjct: 359 VAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRH 418
Query: 814 GIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKM 873
+R+ + AAF Y + PG + +D+ + +R + +HP TCKM
Sbjct: 419 CVRLTREIFGQAAFDPYRGAEI---QPGA---HVQTDDEIDNFIREHVESAFHPCGTCKM 472
Query: 874 GPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
G DP AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 473 GAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 37/52 (71%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTL 536
L++ SGIGP HL+ I ++ + VG NLQDH+ + + P+T E +
Sbjct: 258 LLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEV-YIQQECTQPITLYSELNLFSKA 316
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ ++++L + G + E AFV +K +G ++PD+Q+HF P ++ DG
Sbjct: 317 RIGVEWLLFKTGD-GATNHFESAAFVRSK---AGVEYPDIQYHFLPVAIRYDG 365
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 199 bits (506), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 197/366 (53%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R YD+I+ GAGSAG V+A RL+E+P+ +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYFKK+E + YH G ++V S P +PL A V AG + GY
Sbjct: 117 ENWTYLDCLPYFKKAE---TRDVGPNDYHGGDGPVSVTTSKPGVNPLFEAMVDAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L + R NL I A R+LFD
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKGRPNLEIVTHALADRILFDGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ LR + A++E++ +GAI SPQLL SG+GP L+ L+IPI+ +
Sbjct: 234 ----RASGVTYLRGSERANAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + + PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGQNLQDHLEM-YIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 136/278 (48%), Gaps = 24/278 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP L+ L+IPI+ +L VG NLQDH+ + + + PV+ K Q
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
+Y R L P C SD+ + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRYRGREL-NPGADCK-----SDKELDTFVRSRAETAFHPSCSCKMG--YDDMAVVDEE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G++GLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 493 GRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G++GLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP L+ L+IPI+ +L VG NLQDH+ + + + PV+ + +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMY-IQYECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 200/358 (55%), Gaps = 23/358 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGY-LQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ + +++IE G D + +P+ + + + DW +
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFS 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP L PRGKVLGGSS +N M+YVRG+ D+D W + G GW Y
Sbjct: 64 SEPEPHIGGRSLVT-------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E+++ + + G L VQ +PL AFV+AG + G+E D N
Sbjct: 117 DVLPYFKRMENSQGG---QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
GE+Q GF + TI G R S + A+L+P R N+ + ++ A +++ + +AVG
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI IRA++E+I +A +INSP+LLM+SGIGP HL+ I ++ + VG NL
Sbjct: 229 VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNL 288
Query: 388 QDHVGLGGLTFIVDGPVTF--KKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTK 443
QDH+ + + P+T K + + ++++L + G + E AFV +K
Sbjct: 289 QDHLEV-YIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGD-GATNHFESAAFVRSK 344
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 176/411 (42%), Gaps = 51/411 (12%)
Query: 551 TSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKP 610
S GG EG N G + FH + + G E G + F + +
Sbjct: 127 NSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQT 186
Query: 611 LINAETWT-----ILPLLLRP---LSTGNGIRIVFENLDKV------------------L 644
+ N W+ + P L RP L G +IV E V +
Sbjct: 187 IHNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGKRAVGVEIEAGRTFSTIRARREV 246
Query: 645 VIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPV 703
+I S S +L+LS GIGP HL+ I ++ + VG NLQDH+ + + P+
Sbjct: 247 IIAASSINSPKLLMLS-GIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQPI 304
Query: 704 T-------FKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYF- 755
T F K R V L +T D + + + F R SK + YP I+ ++
Sbjct: 305 TLYSKLNLFSKARIGVEWLLF-KTGDGATNHFESAAFVR-----SKAGVEYPDIQYHFLP 358
Query: 756 -QHRRDIETLIEGIRIAFNVS-ASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIE 813
R D + + +V + + + L+S NP P+I+ NY H D
Sbjct: 359 VAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRH 418
Query: 814 GIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKM 873
+R+ + AAF Y + PG + +D+ + +R + +HP TCKM
Sbjct: 419 CVRLTREIFGQAAFDPYRGAEI---QPGA---HVQTDDEIDNFIREHVESAFHPCGTCKM 472
Query: 874 GPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
G DP AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 473 GAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 37/52 (71%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTL 536
L++ SGIGP HL+ I ++ + VG NLQDH+ + + P+T K +
Sbjct: 258 LLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEV-YIQQECTQPITLYSKLNLFSKA 316
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ ++++L + G + E AFV +K +G ++PD+Q+HF P ++ DG
Sbjct: 317 RIGVEWLLFKTGD-GATNHFESAAFVRSK---AGVEYPDIQYHFLPVAIRYDG 365
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 200/358 (55%), Gaps = 23/358 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGY-LQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ + +++IE G D + +P+ + + + DW +
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFS 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP L PRGKVLGGSS +N M+YVRG+ D+D W + G GW Y
Sbjct: 64 SEPEPHIGGRSLVT-------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E+++ + + G L VQ +PL AFV+AG + G+E D N
Sbjct: 117 DVLPYFKRMENSQGG---QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
GE+Q GF + TI G R S + A+L+P R N+ + ++ A +++ + +AVG
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI IRA++E+I +A +INSP+LLM+SGIGP HL+ I ++ + VG NL
Sbjct: 229 VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNL 288
Query: 388 QDHVGLGGLTFIVDGPVTF--KKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTK 443
QDH+ + + P+T K + + ++++L + G + E AFV +K
Sbjct: 289 QDHLEV-YIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGD-GATNHFESAAFVRSK 344
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 176/411 (42%), Gaps = 51/411 (12%)
Query: 551 TSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKP 610
S GG EG N G + FH + + G E G + F + +
Sbjct: 127 NSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQT 186
Query: 611 LINAETWT-----ILPLLLRP---LSTGNGIRIVFENLDKV------------------L 644
+ N W+ + P L RP L G +IV E V +
Sbjct: 187 IHNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGKRAVGVEIEAGRTFSTIRARREV 246
Query: 645 VIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPV 703
+I S S +L+LS GIGP HL+ I ++ + VG NLQDH+ + + P+
Sbjct: 247 IIAASSINSPKLLMLS-GIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQPI 304
Query: 704 T-------FKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYF- 755
T F K R V L +T D + + + F R SK + YP I+ ++
Sbjct: 305 TLYSKLNLFSKARIGVEWLLF-KTGDGATNHFESAAFVR-----SKAGVEYPDIQYHFLP 358
Query: 756 -QHRRDIETLIEGIRIAFNVS-ASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIE 813
R D + + +V + + + L+S NP P+I+ NY H D
Sbjct: 359 VAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRH 418
Query: 814 GIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKM 873
+R+ + AAF Y + PG + +D+ + +R + +HP TCKM
Sbjct: 419 CVRLTREIFGQAAFDPYRGAEI---QPGA---HVQTDDEIDNFIREHVESAFHPCGTCKM 472
Query: 874 GPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
G DP AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 473 GAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 37/52 (71%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +D
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASD 523
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTL 536
L++ SGIGP HL+ I ++ + VG NLQDH+ + + P+T K +
Sbjct: 258 LLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEV-YIQQECTQPITLYSKLNLFSKA 316
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ ++++L + G + E AFV +K +G ++PD+Q+HF P ++ DG
Sbjct: 317 RIGVEWLLFKTGD-GATNHFESAAFVRSK---AGVEYPDIQYHFLPVAIRYDG 365
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 190/351 (54%), Gaps = 37/351 (10%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGYLQLSE-LDWKY 148
YD+I++GAGSAG V+ANRLS +P ++ L+EAG D N + +P L S+ L+W +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 149 KTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGY 208
+T P + G WPRGK LGGSS +NAM+Y+RG+++DY WE+ WG+
Sbjct: 62 QTAPQQN-------LNGRSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGW 114
Query: 209 KDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDI 267
L FK+ E N+ ++ +H G L V + + +PL+ AFV+AG E N D
Sbjct: 115 YRALELFKRLECNQR--FDKSEHHGVDGELAVSDLKYINPLSKAFVQAGMEANINFNGDF 172
Query: 268 NGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAV 327
NGE Q G Q T + G R S+++AFL + R NL I + A ++LF+ KAV
Sbjct: 173 NGEYQDGVGFYQVTQKNGQRWSSARAFLHGVLSRPNLDIITDAHASKILFEDR----KAV 228
Query: 328 GIEILRDGRKHIIRAKK--EIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVG 384
G+ ++ H ++ E++ S GA+ +P LLM+SG+G L+ + ++ +L VG
Sbjct: 229 GVSYIKKNMHHQVKTTSGGEVLLSLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEVG 288
Query: 385 HNLQDHVGLG-------------GLTFIVDG-----PVTFKKERYQTLSVA 417
NLQDH+ + L+FI G FK+E + T +VA
Sbjct: 289 KNLQDHLDITLMCAANSREPIGVALSFIPRGVSGLFSYVFKREGFLTSNVA 339
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 144/295 (48%), Gaps = 46/295 (15%)
Query: 655 HILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLG-------------GLTFIVD 700
H+L+LS G+G L+ + ++ +L VG NLQDH+ + L+FI
Sbjct: 260 HLLMLS-GVGAAAELKEHGVSLVHDLPEVGKNLQDHLDITLMCAANSREPIGVALSFIPR 318
Query: 701 G-----PVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYF 755
G FK+E + T + + F + + + L + + P Y
Sbjct: 319 GVSGLFSYVFKREGFL------------TSNVAESGGFVKSSPDRDRPNLQFHFL-PTYL 365
Query: 756 Q-HRRDIETLIEGIRIAFNVSASA-AFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIE 813
+ H R I G ++ + I L+S NPL PLI+PNY DI+T+I
Sbjct: 366 KDHGRKIAG---GYGYTLHICDLLPKSRGRIGLKSANPLQPPLIDPNYLSDHEDIKTMIA 422
Query: 814 GIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKM 873
GI+I + + + K+ ++ PG A+ DE E +R TIYHP TC+M
Sbjct: 423 GIKIGRAILQAPSMAKHFKHEVV---PGQAVKT--DDEIIE-DIRRRAETIYHPVGTCRM 476
Query: 874 GPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSR 928
G DP +VVDP L++ G+ +RV+DASIMP +V+GN NAPTIMI E A++ R
Sbjct: 477 G--KDPASVVDPCLKIRGLANIRVVDASIMPHLVAGNTNAPTIMIAENAAEIIMR 529
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMKQSYLDQE 996
D +VVDP L++ G+ +RV+DASIMP +V+GN NAPTIMI E A++ LD E
Sbjct: 479 DPASVVDPCLKIRGLANIRVVDASIMPHLVAGNTNAPTIMIAENAAEIIMRNLDVE 534
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 478 HILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQTL 536
H+L+LS G+G L+ + ++ +L VG NLQDH+ D + + +
Sbjct: 260 HLLMLS-GVGAAAELKEHGVSLVHDLPEVGKNLQDHL---------DITLMCAANSREPI 309
Query: 537 SVALQYI-LNERGPLTSLGGVEGLAFVNTKYAPSGG--------DWPDVQFHFAPSSVNS 587
VAL +I G + + EG F+ + A SGG D P++QFHF P+ +
Sbjct: 310 GVALSFIPRGVSGLFSYVFKREG--FLTSNVAESGGFVKSSPDRDRPNLQFHFLPTYLKD 367
Query: 588 DGGEQIRKILG 598
G RKI G
Sbjct: 368 HG----RKIAG 374
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 128/358 (35%), Positives = 200/358 (55%), Gaps = 23/358 (6%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG-GDENEISDIPSLAGY-LQLSELDWKYK 149
DF++IG+GSAG+ +A RLSE+ + +++IE G D + +P+ + + + DW +
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWGFS 63
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYK 209
+EP L PRGKVLGGSS +N M+YVRG+ D+D W + G GW Y
Sbjct: 64 SEPEPHIRGRSLVT-------PRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYA 116
Query: 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGYE-NRDIN 268
DVLPYFK+ E+++ + + G L VQ +PL AFV+AG + G+E D N
Sbjct: 117 DVLPYFKRMENSQGG---QEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYN 173
Query: 269 GERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVG 328
GE+Q GF + TI G R S + A+L+P R N+ + ++ A +++ + +AVG
Sbjct: 174 GEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKL-VKGFARKIVLEGK----RAVG 228
Query: 329 IEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-SVGHNL 387
+EI IRA++E+I +A +INSP+LLM+SGIGP HL+ I ++ + VG NL
Sbjct: 229 VEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQNL 288
Query: 388 QDHVGLGGLTFIVDGPVTF--KKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTK 443
QDH+ + + P+T K + + ++++L + G + E AFV +K
Sbjct: 289 QDHLEV-YIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGD-GATNHFESAAFVRSK 344
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 175/410 (42%), Gaps = 51/410 (12%)
Query: 551 TSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKP 610
S GG EG N G + FH + + G E G + F + +
Sbjct: 127 NSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDDYNGEKQEGFGPMEQT 186
Query: 611 LINAETWT-----ILPLLLRP---LSTGNGIRIVFENLDKV------------------L 644
+ N W+ + P L RP L G +IV E V +
Sbjct: 187 IHNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGKRAVGVEIEAGRTFSTIRARREV 246
Query: 645 VIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPV 703
+I S S +L+LS GIGP HL+ I ++ + VG NLQDH+ + + P+
Sbjct: 247 IIAASSINSPKLLMLS-GIGPAAHLKEHGIDLVADRPGVGQNLQDHLEVY-IQQECTQPI 304
Query: 704 T-------FKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYF- 755
T F K R V L +T D + + + F R SK + YP I+ ++
Sbjct: 305 TLYSKLNLFSKARIGVEWLLF-KTGDGATNHFESAAFVR-----SKAGVEYPDIQYHFLP 358
Query: 756 -QHRRDIETLIEGIRIAFNVS-ASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIE 813
R D + + +V + + + L+S NP P+I+ NY H D
Sbjct: 359 VAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRH 418
Query: 814 GIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKM 873
+R+ + AAF Y + PG + +D+ + +R + +HP TCKM
Sbjct: 419 CVRLTREIFGQAAFDPYRGAEI---QPGA---HVQTDDEIDNFIREHVESAFHPCGTCKM 472
Query: 874 GPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGA 923
G DP AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +
Sbjct: 473 GAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKAS 522
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 36/51 (70%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGA 986
MG D AVVDP RV GV+GLRV D+SI P I +GN N P+IM+GEK +
Sbjct: 472 MGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKAS 522
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTL 536
L++ SGIGP HL+ I ++ + VG NLQDH+ + + P+T K +
Sbjct: 258 LLMLSGIGPAAHLKEHGIDLVADRPGVGQNLQDHLEV-YIQQECTQPITLYSKLNLFSKA 316
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ ++++L + G + E AFV +K +G ++PD+Q+HF P ++ DG
Sbjct: 317 RIGVEWLLFKTGD-GATNHFESAAFVRSK---AGVEYPDIQYHFLPVAIRYDG 365
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 196/366 (53%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R +D+I+ GAGSAG V+A RL+E+P +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYF+K+E + YH G ++V S P +PL A V+AG + GY
Sbjct: 117 EDWAYLDCLPYFRKAE---TRDVGPNDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ RG R ST++ +L R R NL I A R+LF
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDQARARPNLEIVTHALADRILFSGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ L + A++E++ +GAI SPQLL SG+GP E L+ L+IP++ +
Sbjct: 234 ----RATGVTFLHGSARVTAHARREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + F PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGRNLQDHLEM-YIQFECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 140/282 (49%), Gaps = 22/282 (7%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP E L+ L+IP++ +L VG NLQDH+ + + F PV+ K Q
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMY-IQFECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY IE + G
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-NGSNAIE--MHG 382
Query: 768 IRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAF 827
+ S + + ++L+S++P +P I NY D + IR + A
Sbjct: 383 FQAHVGSMRSPSCGR-VKLKSRDPHAHPSILFNYMAEALDWREFRDAIRATREIMRQPAL 441
Query: 828 QKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRL 887
++ R L PG +L SD + +R T +HP+ +CKMG D AVVD
Sbjct: 442 DRFRGREL---NPGA---DLKSDNELDTFVRARAETAFHPSCSCKMG--YDDMAVVDNEG 493
Query: 888 RVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRY 929
RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD ++
Sbjct: 494 RVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRIRKH 535
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP E L+ L+IP++ +L VG NLQDH+ + + F PV+ + +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMY-IQFECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 196/366 (53%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R +D+I+ GAGSAG V+A RL+E+P +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W G
Sbjct: 64 NWAYETDPEP-------HMNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYF+K+E + YH G ++V S P +PL A V+AG + GY
Sbjct: 117 EDWAYLDCLPYFRKAE---TRDVGPNDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ RG R ST++ +L R R NL I A R+LF
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDQARARPNLEIVTHALADRILFSGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ L + A++E++ +GAI SPQLL SG+GP E L+ L+IP++ +
Sbjct: 234 ----RATGVTFLHGSARVTAHARREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + F PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGRNLQDHLEM-YIQFECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 24/283 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP E L+ L+IP++ +L VG NLQDH+ + + F PV+ K Q
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMY-IQFECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLKSRDPHAHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
++ R L PG +L SD + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRFRGREL---NPGA---DLKSDNELDTFVRARAETAFHPSCSCKMG--YDDMAVVDNE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRY 929
RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD ++
Sbjct: 493 GRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRIRKH 535
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP E L+ L+IP++ +L VG NLQDH+ + + F PV+ + +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMY-IQFECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 196 bits (499), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 182/317 (57%), Gaps = 23/317 (7%)
Query: 86 TLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQL 141
T R YD+I+IGAGSAG V+A RL+E+PD ++LL+EAGG + + +P+ Y LQ
Sbjct: 2 TQAREYDYIIIGAGSAGNVLATRLTEDPDVQVLLLEAGGPDYRFDFRTQMPAALAYPLQG 61
Query: 142 SELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL 201
+W ++T+P Y M R RGK LGGSS++N M Y+RGN DYD W ++
Sbjct: 62 KRYNWAFETDP----EPY---MNNRRMECGRGKGLGGSSLINGMCYLRGNALDYDNWAKI 114
Query: 202 -GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQE-SPWHSPLAAAFVKAGEE 259
G W Y LPYFK++E + YH G ++V ++ L AF++AG E
Sbjct: 115 PGLEDWNYLQCLPYFKRAETRD---IGPNDYHGGDGPVSVATPKEGNNELYGAFIRAGIE 171
Query: 260 LGY-ENRDINGERQTGFM-IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLF 317
GY D+NG +Q GF + + T G R ST++ +L + R NL I ET A +
Sbjct: 172 AGYPATEDVNGYQQEGFGPMDRTTTPNGRRASTARGYLDIAKQRPNLTI--ETHATTDVI 229
Query: 318 DKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPI 377
+ G +AVG+ R G+ +RA++E++ AGAI SPQ+L SG+G EHL+ +IP+
Sbjct: 230 EFEGK--RAVGVSYERKGQAQRVRARREVLLCAGAIASPQILQRSGVGNPEHLEEFDIPV 287
Query: 378 IKNL-SVGHNLQDHVGL 393
+ L VG NLQDH+ +
Sbjct: 288 VHELPGVGENLQDHLEM 304
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 138/277 (49%), Gaps = 20/277 (7%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
++ SG+G EHL+ +IP++ L VG NLQDH+ + + + P++ Y L
Sbjct: 268 ILQRSGVGNPEHLEEFDIPVVHELPGVGENLQDHLEMY-IQYECKKPISL----YPALKW 322
Query: 716 LSERTDDSTYSTY-----TNTLFPRYIRLQSKNPLHYPLIEPNYF--QHRRDIETLIEGI 768
++ + + + + F +++ + +P ++ ++ + ++ ++
Sbjct: 323 YNQPKIGAEWLFFGKGIGASNQFEAAGFIRTNDQEEWPNLQYHFLPIAISYNGKSAVQAH 382
Query: 769 RIAFNVSASAAFKK-YIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAF 827
+V + + + IRL S++P P I NY H +D + + IRI +
Sbjct: 383 GFQAHVGSMRSMSRGRIRLTSRDPKAAPSILFNYMSHDKDWQEFRDAIRITREIIEQPTM 442
Query: 828 QKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRL 887
+Y R + +P P SD + +R T YHP +CKMG D AVVD
Sbjct: 443 DEYRGREI-SPGPNVQ-----SDAELDEFVRQHAETAYHPAGSCKMGSADDAMAVVDGAG 496
Query: 888 RVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
RV+G++GLRVIDASIMP+I +GN NAPTIMI EK AD
Sbjct: 497 RVHGLEGLRVIDASIMPVIATGNLNAPTIMIAEKMAD 533
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 41/52 (78%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG A D AVVD RV+G++GLRVIDASIMP+I +GN NAPTIMI EK AD
Sbjct: 482 MGSADDAMAVVDGAGRVHGLEGLRVIDASIMPVIATGNLNAPTIMIAEKMAD 533
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
++ SG+G EHL+ +IP++ L VG NLQDH+ + + + P++ + Y
Sbjct: 268 ILQRSGVGNPEHLEEFDIPVVHELPGVGENLQDHLEMY-IQYECKKPISLYPALKWYNQP 326
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIR 594
+ +++ +G + + E F+ T +WP++Q+HF P +++ +G ++
Sbjct: 327 KIGAEWLFFGKG-IGASNQFEAAGFIRTN---DQEEWPNLQYHFLPIAISYNGKSAVQ 380
>sp|Q63KK7|BETA_BURPS Choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243)
GN=betA PE=3 SV=1
Length = 565
Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 195/366 (53%), Gaps = 27/366 (7%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPSLAGY-LQLSEL 144
R +D+I+ GAGSAG V+A RL+E+P +LL+EAGG + + +P+ Y LQ
Sbjct: 4 REFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRY 63
Query: 145 DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE-RLGN 203
+W Y+T+P M R RGK LGGSS++N M Y+RGN DYD W
Sbjct: 64 NWAYETDPEP-------HMNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKAL 116
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQES-PWHSPLAAAFVKAGEELGY 262
W Y D LPYF+K+E + YH G ++V S P +PL A V+AG + GY
Sbjct: 117 EDWAYLDCLPYFRKAE---TRDVGPNDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGY 173
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ RG R ST++ +L R R NL I A R+LF
Sbjct: 174 PRTDDLNGYQQEGFGPMDRTVTPRGRRASTARGYLDQARARPNLEIVTHALADRILFSGK 233
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+A G+ L + A++E++ +GAI SPQLL SG+GP E L+ L+IP++ +
Sbjct: 234 ----RATGVTFLHGSARVTAHARREVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLD 289
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTLSVALQYILNERGPLTSLGGVEGL 437
L VG NLQDH+ + + F PV+ + + + L+++LN G L + E
Sbjct: 290 LPGVGRNLQDHLEM-YIQFECKEPVSLYPALKWWNQPKIGLEWMLNGTG-LGASNHFEAG 347
Query: 438 AFVNTK 443
F+ T+
Sbjct: 348 GFIRTR 353
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 24/283 (8%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFK---KERYQV 712
L+ SG+GP E L+ L+IP++ +L VG NLQDH+ + + F PV+ K Q
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMY-IQFECKEPVSLYPALKWWNQP 325
Query: 713 LLCLSERTDDSTYSTYTNTLFPRYIRLQSKNP-----LHYPLIEPNYFQHRRDIETLIEG 767
+ L + + + +IR + +P H+ + NY + IE
Sbjct: 326 KIGLEWMLNGTGLGASNHFEAGGFIRTRDDDPWPNIQYHFLPVAINY-----NGSNAIEM 380
Query: 768 IRIAFNV-SASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAA 826
+V S + + ++L+S++P +P I NY D + IR + A
Sbjct: 381 HGFQAHVGSMRSPSRGRVKLKSRDPHAHPSILFNYMAEALDWREFRDAIRATREIMRQPA 440
Query: 827 FQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPR 886
++ R L PG +L SD + +R T +HP+ +CKMG D AVVD
Sbjct: 441 LDRFRGREL---NPGA---DLKSDNELDTFVRARAETAFHPSCSCKMG--YDDMAVVDNE 492
Query: 887 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRY 929
RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD ++
Sbjct: 493 GRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRIRQH 535
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD RV+G+DGLRV+DASIMPII +GN NAPTIMI EK AD
Sbjct: 484 DDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIAD 530
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKK--ERYQTL 536
L+ SG+GP E L+ L+IP++ +L VG NLQDH+ + + F PV+ + +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMY-IQFECKEPVSLYPALKWWNQP 325
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQI 593
+ L+++LN G L + E F+ T+ WP++Q+HF P ++N +G I
Sbjct: 326 KIGLEWMLNGTG-LGASNHFEAGGFIRTR---DDDPWPNIQYHFLPVAINYNGSNAI 378
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 191/365 (52%), Gaps = 24/365 (6%)
Query: 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE---NEISDIPSLAGYLQLSE 143
+ +YD+I+IG GSAG+V+ RLSE+ +L++EAG + + + +P+ Y ++
Sbjct: 1 MKESYDYIIIGGGSAGSVLGGRLSEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNK 60
Query: 144 L-DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWER-L 201
L DW Y+T P M G + RGKVLGGSS +N MIY RGN DY++W +
Sbjct: 61 LYDWIYETTPEP-------HMDGRKVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPE 113
Query: 202 GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELG 261
G W Y LPYFK+ E PY G + ++ P +PL AF AG E G
Sbjct: 114 GMESWDYAHCLPYFKRLETTFGS-KKGDPYRGHHGPIKLRRGPADNPLFQAFFDAGVEAG 172
Query: 262 YENR-DINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
Y D+NG RQ GF + G R S S+A+L P RKNL + +L F+ +
Sbjct: 173 YNKTPDVNGFRQEGFGPFDSQVHNGRRVSASRAYLHPAMKRKNLEVQTRAFVTKLNFEGN 232
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNI-PIIK 379
K G+ ++G++H A KE+I S GAINSPQLL +SGIG EHL+ L I P I
Sbjct: 233 ----KVTGVTFKKNGKEHTESA-KEVILSGGAINSPQLLQLSGIGDSEHLRSLGIEPRIH 287
Query: 380 NLSVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTLSVALQYILNERGPLTSLGGVEGL 437
VG N +DH+ + + PV+ + + + + LQ+IL +G S EG
Sbjct: 288 LPGVGENFEDHLEV-YVQHACKQPVSMQPSLNKLKMPFIGLQWILGRKGAAAS-NHFEGG 345
Query: 438 AFVNT 442
FV +
Sbjct: 346 GFVRS 350
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 134/284 (47%), Gaps = 31/284 (10%)
Query: 657 LVLSSGIGPEEHLQGLNI-PIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFK------KER 709
L+ SGIG EHL+ L I P I VG N +DH+ + + PV+ + K
Sbjct: 265 LLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHLEVY-VQHACKQPVSMQPSLNKLKMP 323
Query: 710 YQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIR 769
+ L + R + + + F R S + + YP N H I +G +
Sbjct: 324 FIGLQWILGRKGAAASNHFEGGGFVR-----SNDDVDYP----NLMFHFLPIAVRYDGTK 374
Query: 770 I----AFNVSASAAF---KKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVS 822
+ V + + +++++SK+P P NY D +E I++A N+
Sbjct: 375 APAAHGYQVHVGPMYSNSRGHLKIKSKDPFEKPEFVFNYLSTEEDKREWVEAIKVARNIL 434
Query: 823 ASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAV 882
A +N + +P P E+ +DE ++ T HP+ +C+MGP +D +V
Sbjct: 435 KQKALDPFNGGEI-SPGP-----EVQTDEEIIEWVKRDGETALHPSCSCRMGPASDEMSV 488
Query: 883 VDPR-LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
VDP +V+G++ LRV+DAS+MP +GN ++P +M+ E+ +D+
Sbjct: 489 VDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAERASDI 532
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 936 MGPATDLEAVVDPR-LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MGPA+D +VVDP +V+G++ LRV+DAS+MP +GN ++P +M+ E+ +D+
Sbjct: 479 MGPASDEMSVVDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAERASDI 532
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNI-PIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTL 536
L+ SGIG EHL+ L I P I VG N +DH+ + + PV+ + + +
Sbjct: 265 LLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHLEVY-VQHACKQPVSMQPSLNKLKMP 323
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ LQ+IL +G S EG FV + D+P++ FHF P +V DG
Sbjct: 324 FIGLQWILGRKGAAAS-NHFEGGGFVRSN---DDVDYPNLMFHFLPIAVRYDG 372
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 199/364 (54%), Gaps = 30/364 (8%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEIS-DIPSLAGYLQLSE-LDWKY 148
YD+I++GAGSAG V+A+RLS + + ILL+EAGG + I +P+ Y SE W++
Sbjct: 5 YDYIIVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMPTALSYPMNSEKYAWQF 64
Query: 149 KTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGY 208
+T+P G + L C PRG+VLGGSS +N M+YVRG+ DYD+W G GW Y
Sbjct: 65 ETQPEAGLDSRSL-----HC--PRGRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSY 117
Query: 209 KDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWH----SPLAAAFVKAGEELGY-E 263
++ LPYF+++E + +GG V + +PL AF+ AG++ GY +
Sbjct: 118 QECLPYFRRAES-----WIHGEDTYRGGDGPVGTCNGNDMELNPLYQAFIDAGQQAGYPK 172
Query: 264 NRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPV 323
D NG +Q GF T+ +G R STS A+LR R NL + ++L
Sbjct: 173 TDDYNGYQQEGFGPMHMTVDKGIRASTSNAYLRRAMKRSNLTVRKGVVTRKVLIKNK--- 229
Query: 324 PKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL-S 382
+A+G+EI G+ + A E++ SAG++ SPQLL +SGIGP+ L+ I + +L
Sbjct: 230 -QAIGVEIEVGGKVQSVYANTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPG 288
Query: 383 VGHNLQDHVGLGGLTFIVDGPVTFKKERYQTLSVAL---QYILNERGPLTSLGGVEGLAF 439
VG NLQDH+ + + P+T + +S L ++IL + G L + E AF
Sbjct: 289 VGENLQDHLEV-YFQYACHQPITLNS-KLGLISKGLIGTRWILQKDG-LGATNHFESCAF 345
Query: 440 VNTK 443
+ ++
Sbjct: 346 IRSR 349
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 144/307 (46%), Gaps = 23/307 (7%)
Query: 627 LSTGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHN 685
+ G ++ V+ N + +L P L+ SGIGP+ L+ I + +L VG N
Sbjct: 236 IEVGGKVQSVYANTEVLLSAGSVGSPQ---LLQLSGIGPKAVLEQAGIAVKHDLPGVGEN 292
Query: 686 LQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTL-----FPRYIRLQ 740
LQDH+ + + P+T + L +S+ + + + L F ++
Sbjct: 293 LQDHLEVY-FQYACHQPITLNSK----LGLISKGLIGTRWILQKDGLGATNHFESCAFIR 347
Query: 741 SKNPLHYPLIEPNYF--QHRRDIETLIEGIRIAFNVSASA-AFKKYIRLQSKNPLHYPLI 797
S+ L +P I+ ++ R D + +G +V + + I + S +P P I
Sbjct: 348 SRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPQSRGRIWITSADPHQKPNI 407
Query: 798 EPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSL 857
E NY +D + + IR+ + A A Y + PG ++ SDE + +
Sbjct: 408 EFNYISTEQDKQDWRDCIRLTREILAQPAMDDYRGEEI---QPGA---DITSDEAMDAWV 461
Query: 858 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 917
R + YHP+ TCKMG DP V++ +V G+D LRVID+S+ P I +GN NAPTIM
Sbjct: 462 RQNVESAYHPSCTCKMGSDNDPMTVLNKDCQVRGIDSLRVIDSSVFPTIPNGNLNAPTIM 521
Query: 918 IGEKGAD 924
+ EK AD
Sbjct: 522 VAEKAAD 528
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG D V++ +V G+D LRVID+S+ P I +GN NAPTIM+ EK AD
Sbjct: 477 MGSDNDPMTVLNKDCQVRGIDSLRVIDSSVFPTIPNGNLNAPTIMVAEKAAD 528
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 456 IRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVG 514
++ V+ N + +L P L+ SGIGP+ L+ I + +L VG NLQDH+
Sbjct: 242 VQSVYANTEVLLSAGSVGSPQ---LLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDHLE 298
Query: 515 LGGLTFIVDGPVTFKKERYQTLSVAL---QYILNERGPLTSLGGVEGLAFVNTKYAPSGG 571
+ + P+T + +S L ++IL + G L + E AF+ ++ +G
Sbjct: 299 VY-FQYACHQPITLNS-KLGLISKGLIGTRWILQKDG-LGATNHFESCAFIRSR---AGL 352
Query: 572 DWPDVQFHFAPSSVNSDG 589
WP++Q+HF P+++ DG
Sbjct: 353 KWPNIQYHFLPAAMRYDG 370
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 192/365 (52%), Gaps = 24/365 (6%)
Query: 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE---NEISDIPSLAGYLQLSE 143
+ ++YD+I+IG GSAG+V+ +R+SE+ +L++EAG + + + +P+ Y ++
Sbjct: 1 MKQSYDYIIIGGGSAGSVLGSRISEDVSNNVLVLEAGRSDYPWDLLIQMPAALMYPAGNK 60
Query: 144 L-DWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWER-L 201
L DW Y+T P M G + RGKVLGGSS +N MIY RGN DY++W +
Sbjct: 61 LYDWIYETTPEP-------HMDGRKVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPE 113
Query: 202 GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELG 261
G W Y LPYFK+ E + G + ++ P +PL AF AG E G
Sbjct: 114 GMDSWDYAHCLPYFKRLEKTFGA-TKDDQFRGHHGPIKLRRGPADNPLFQAFFDAGVEAG 172
Query: 262 YENR-DINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
Y D+NG RQ GF + G R S S+A+L P RKNL + +L F+ +
Sbjct: 173 YNKTPDVNGFRQEGFGPFDSQVHNGRRVSASRAYLHPAMKRKNLEVQTRAFVTKLNFEGN 232
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNI-PIIK 379
K G+ ++GR+H + A KE+I S GAINSPQLL +SGIG EHL+ L I P I
Sbjct: 233 ----KVTGVTFKKNGREHTVNA-KEVILSGGAINSPQLLQLSGIGDSEHLRSLGIEPRIH 287
Query: 380 NLSVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTLSVALQYILNERGPLTSLGGVEGL 437
VG N +DH+ + + PV+ + + + + LQ+I +G S EG
Sbjct: 288 LPGVGENFEDHLEV-YVQHACKEPVSMQPSLNKLKMPFIGLQWIFGRKGAAAS-NHFEGG 345
Query: 438 AFVNT 442
FV +
Sbjct: 346 GFVRS 350
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 133/284 (46%), Gaps = 31/284 (10%)
Query: 657 LVLSSGIGPEEHLQGLNI-PIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFK------KER 709
L+ SGIG EHL+ L I P I VG N +DH+ + + PV+ + K
Sbjct: 265 LLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHLEVY-VQHACKEPVSMQPSLNKLKMP 323
Query: 710 YQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIR 769
+ L + R + + + F R S + YP N H I +G +
Sbjct: 324 FIGLQWIFGRKGAAASNHFEGGGFVR-----SNEDVDYP----NLMFHFLPIAVRYDGTK 374
Query: 770 I----AFNVSASAAF---KKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVS 822
+ V + + +++++SK+P P NY D +E I++A N+
Sbjct: 375 APAAHGYQVHVGPMYSNSRGHLKIKSKDPFVKPDFVFNYLSTEEDKREWVEAIKVARNIL 434
Query: 823 ASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAV 882
A YN + +P P E+ +DE ++ T HP+ +C+MGP +D +V
Sbjct: 435 GQKALDPYNGGEI-SPGP-----EVQTDEEIIEWVKRDGETALHPSCSCRMGPASDEMSV 488
Query: 883 VDPR-LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
VDP +V+G++ LRV+DAS+MP +GN ++P +M+ EK AD+
Sbjct: 489 VDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAEKAADI 532
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 936 MGPATDLEAVVDPR-LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MGPA+D +VVDP +V+G++ LRV+DAS+MP +GN ++P +M+ EK AD+
Sbjct: 479 MGPASDEMSVVDPETFKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAEKAADI 532
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Query: 480 LVLSSGIGPEEHLQGLNI-PIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTL 536
L+ SGIG EHL+ L I P I VG N +DH+ + + PV+ + + +
Sbjct: 265 LLQLSGIGDSEHLRSLGIEPRIHLPGVGENFEDHLEVY-VQHACKEPVSMQPSLNKLKMP 323
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDG 589
+ LQ+I +G S EG FV + D+P++ FHF P +V DG
Sbjct: 324 FIGLQWIFGRKGAAAS-NHFEGGGFVRSN---EDVDYPNLMFHFLPIAVRYDG 372
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 184/325 (56%), Gaps = 24/325 (7%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPS-LAGYLQLSELDW 146
YD+I+IGAGSAG V+A RL+E D +LL+EAGG + + + +P+ LA LQ +W
Sbjct: 3 YDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNW 62
Query: 147 KYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL-GNPG 205
Y+T+P M R RGK LGGSS++N M Y+RGN D+D W + G
Sbjct: 63 AYETDPEP-------HMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWATMPGLED 115
Query: 206 WGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPW-HSPLAAAFVKAGEELGY-E 263
W Y D LPYF+K+E + YH G ++V ++ L A V+AG + GY
Sbjct: 116 WSYLDCLPYFRKAE---TRDVGSNDYHGATGPVSVATPKMGNNELFHAMVEAGVQAGYPR 172
Query: 264 NRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGP 322
D+NG +Q GF T+ +G R ST++ +L + RKNL I ++LF+
Sbjct: 173 TDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKGRKNLTIVTHALTDKILFEGK-- 230
Query: 323 VPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNL- 381
+AVG+ + ++A++E++ AGAI SPQ+L SG+GP++ LQGL+IP++ +L
Sbjct: 231 --RAVGVAYFKGESPQTVQARREVLLCAGAIASPQILQRSGVGPKDLLQGLDIPVVHDLP 288
Query: 382 SVGHNLQDHVGLGGLTFIVDGPVTF 406
VG NLQDH+ + L + PV+
Sbjct: 289 GVGENLQDHLEM-YLQYACKEPVSL 312
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 148/294 (50%), Gaps = 48/294 (16%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
++ SG+GP++ LQGL+IP++ +L VG NLQDH+ + L + PV+ Y L
Sbjct: 264 ILQRSGVGPKDLLQGLDIPVVHDLPGVGENLQDHLEMY-LQYACKEPVSL----YPALQW 318
Query: 716 LSERTDDSTY-----STYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRI 770
++ + + + F ++S++ +P I+ ++ + +
Sbjct: 319 FNQPKIGAEWLFSGTGIGASNQFEAGGFIRSRDEFAWPNIQYHF-------------LPV 365
Query: 771 AFNVSASAAFKKY----------------IRLQSKNPLHYPLIEPNYFQHRRDIETLIEG 814
A N + S A K++ ++++SK+ +P I NY +D + +
Sbjct: 366 AINYNGSNAVKEHGFQAHVGSMRSLSRGRVQVRSKDAREHPSILFNYMSTEQDWQEFRDA 425
Query: 815 IRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMG 874
IRI + A A KY R + PG E+ +DE + +R T +HP+ +CKMG
Sbjct: 426 IRITREIMAQPALDKYRGREI---SPG---LEVQTDEELDEFIRTHAETAFHPSCSCKMG 479
Query: 875 PPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSR 928
D AVVD + RV+G++GLRV+DASIMP I++GN NA TIMI EK AD R
Sbjct: 480 --EDEMAVVDGQGRVHGMEGLRVVDASIMPQIITGNLNATTIMIAEKIADRIRR 531
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D AVVD + RV+G++GLRV+DASIMP I++GN NA TIMI EK AD
Sbjct: 481 DEMAVVDGQGRVHGMEGLRVVDASIMPQIITGNLNATTIMIAEKIAD 527
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 67/119 (56%), Gaps = 8/119 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTL 536
++ SG+GP++ LQGL+IP++ +L VG NLQDH+ + L + PV+ + +
Sbjct: 264 ILQRSGVGPKDLLQGLDIPVVHDLPGVGENLQDHLEMY-LQYACKEPVSLYPALQWFNQP 322
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRK 595
+ +++ + G + + E F+ ++ + WP++Q+HF P ++N +G +++
Sbjct: 323 KIGAEWLFSGTG-IGASNQFEAGGFIRSRDEFA---WPNIQYHFLPVAINYNGSNAVKE 377
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 182/327 (55%), Gaps = 28/327 (8%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPS-LAGYLQLSELDW 146
YD+I+IGAGSAG V+A RL+E D +LL+EAGG + + + +P+ LA LQ +W
Sbjct: 3 YDYIIIGAGSAGNVLAARLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNW 62
Query: 147 KYKT--EPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL-GN 203
Y+T EP M D R RGK LGGSS++N M Y+RGN D+D W + G
Sbjct: 63 AYETDPEPHMNDR---------RMECGRGKGLGGSSLINGMCYIRGNAMDFDHWATMSGL 113
Query: 204 PGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPW-HSPLAAAFVKAGEELGY 262
W Y D LPYF+K+E + YH G ++V ++ L A V+AG + GY
Sbjct: 114 EDWSYLDCLPYFRKAE---TRDVGANDYHGASGPVSVTTPKMGNNELFHAMVEAGVQAGY 170
Query: 263 -ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D+NG +Q GF T+ +G R ST++ +L + RKNL I R+LFD
Sbjct: 171 PRTDDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKSRKNLTIVTHALTDRILFDGK 230
Query: 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKN 380
+AVG+ + +A++E++ AGAI SPQ+L SG+GP++ LQ L+I ++ +
Sbjct: 231 ----RAVGVAYFKGESAQTAKARREVLLCAGAIASPQILQRSGVGPKDLLQRLDISVVHD 286
Query: 381 L-SVGHNLQDHVGLGGLTFIVDGPVTF 406
L VG NLQDH+ + L + PV+
Sbjct: 287 LPGVGENLQDHLEM-YLQYACKEPVSL 312
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 48/294 (16%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
++ SG+GP++ LQ L+I ++ +L VG NLQDH+ + L + PV+ Y L
Sbjct: 264 ILQRSGVGPKDLLQRLDISVVHDLPGVGENLQDHLEMY-LQYACKEPVSL----YPALQW 318
Query: 716 LSERTDDSTY-----STYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRI 770
++ + + + F ++S++ +P I+ ++ + +
Sbjct: 319 FNQPKIGAEWLFNGTGIGASNQFEAGGFIRSRDEFTWPNIQYHF-------------LPV 365
Query: 771 AFNVSASAAFKKY----------------IRLQSKNPLHYPLIEPNYFQHRRDIETLIEG 814
A N + S A K++ ++++SK+ +P I NY +D + +
Sbjct: 366 AINYNGSNAVKEHGFQAHVGSMRSLSRGRVQVRSKDAREHPSILFNYMSTEQDWQEFRDA 425
Query: 815 IRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMG 874
IRI + A A KY R + PG A + +DE + +R T +HP+ +CKMG
Sbjct: 426 IRITREIMAQPALDKYRGREI---SPGLA---VQTDEELDEFIRTHAETAFHPSCSCKMG 479
Query: 875 PPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSR 928
D +VVD + V+G++GLRV+DASIMP I++GN NA TIMI EK AD R
Sbjct: 480 --EDDMSVVDGQGCVHGMEGLRVVDASIMPQIITGNLNATTIMIAEKIADRIRR 531
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 37/47 (78%)
Query: 941 DLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D +VVD + V+G++GLRV+DASIMP I++GN NA TIMI EK AD
Sbjct: 481 DDMSVVDGQGCVHGMEGLRVVDASIMPQIITGNLNATTIMIAEKIAD 527
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF--KKERYQTL 536
++ SG+GP++ LQ L+I ++ +L VG NLQDH+ + L + PV+ + +
Sbjct: 264 ILQRSGVGPKDLLQRLDISVVHDLPGVGENLQDHLEMY-LQYACKEPVSLYPALQWFNQP 322
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRK 595
+ +++ N G + + E F+ ++ + WP++Q+HF P ++N +G +++
Sbjct: 323 KIGAEWLFNGTG-IGASNQFEAGGFIRSRDEFT---WPNIQYHFLPVAINYNGSNAVKE 377
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 203/371 (54%), Gaps = 31/371 (8%)
Query: 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPS-LAGYLQLS 142
+ + +D+I++GAGSAG +A RL+E+ +LL+EAGG + + +P+ LA LQ
Sbjct: 1 MSKEFDYIIVGAGSAGNTLATRLTEDASVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60
Query: 143 ELDWKYKTEP-PMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL 201
+W Y+T+P P M G R RGK LGGSS++N M Y+RGN D+D W L
Sbjct: 61 RYNWAYETDPEPF--------MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAEL 112
Query: 202 -GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQE-SPWHSPLAAAFVKAGEE 259
G W Y D LPYF+K+E + YH G ++V ++PL A V+AG +
Sbjct: 113 PGLEDWTYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQ 169
Query: 260 LGY-ENRDINGERQTGFM-IAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLF 317
GY D+NG +Q GF + + ++G R ST++ +L + R NL I + R+LF
Sbjct: 170 AGYPRTEDLNGYQQEGFGPMDRSVTKKGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLF 229
Query: 318 DKSGPVPKAVGIEIL-RDGRKHI-IRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNI 375
D +AVG+ L D + + RA+KE+I S+GAI SPQLL SG+GP L+ L+I
Sbjct: 230 DGK----RAVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDI 285
Query: 376 PIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTLSVALQYILNERGPLTSLG 432
P++ +L VG NLQDH+ L L + PV+ + ++ +++ N G + +
Sbjct: 286 PVVHDLPGVGENLQDHLEL-YLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTG-IGASN 343
Query: 433 GVEGLAFVNTK 443
E F+ T+
Sbjct: 344 QFEAGGFIRTR 354
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 142/290 (48%), Gaps = 48/290 (16%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
L+ SG+GP L+ L+IP++ +L VG NLQDH+ L L + PV+ Y LL
Sbjct: 268 LLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPVSL----YPSLLW 322
Query: 716 LSERTDDSTY-----STYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRI 770
++ + + + F ++++ +P I+ ++ + +
Sbjct: 323 WNQPAIGAEWLFNGTGIGASNQFEAGGFIRTRPEFKWPNIQYHF-------------LPV 369
Query: 771 AFNVSASAAFKKY----------------IRLQSKNPLHYPLIEPNYFQHRRDIETLIEG 814
A N + S K++ I+ +SK+P +P I NY +D + +G
Sbjct: 370 AINYNGSNGVKEHGFQAHMGSMRSPARGRIQAKSKDPRQHPSILFNYMSTEQDWQEFRDG 429
Query: 815 IRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMG 874
IR+ + A A + R + PG + +DE + +R T +HP+ +CKMG
Sbjct: 430 IRLTREIMAQPALDAFRGREI---SPGA---HVQTDEELDKFIREHAETAFHPSCSCKMG 483
Query: 875 PPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
TD AVVD RV+G+ GLRV+DASIMP+I++GN NA TIMI EK +D
Sbjct: 484 --TDDMAVVDGEGRVHGMQGLRVVDASIMPLIITGNLNATTIMIAEKISD 531
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 939 ATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
TD AVVD RV+G+ GLRV+DASIMP+I++GN NA TIMI EK +D
Sbjct: 483 GTDDMAVVDGEGRVHGMQGLRVVDASIMPLIITGNLNATTIMIAEKISD 531
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTL 536
L+ SG+GP L+ L+IP++ +L VG NLQDH+ L L + PV+ +
Sbjct: 268 LLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPVSLYPSLLWWNQP 326
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRK 595
++ +++ N G + + E F+ T+ WP++Q+HF P ++N +G +++
Sbjct: 327 AIGAEWLFNGTG-IGASNQFEAGGFIRTR---PEFKWPNIQYHFLPVAINYNGSNGVKE 381
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 200/370 (54%), Gaps = 29/370 (7%)
Query: 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI---SDIPS-LAGYLQLS 142
+ + YD+I++GAGSAG +A RL+E+ +LL+EAGG + + +P+ LA LQ
Sbjct: 1 MAQEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60
Query: 143 ELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL- 201
+W Y+T+P M G R RGK LGGSS++N M Y+RGN DYD W +L
Sbjct: 61 RYNWAYETDPEP-------HMNGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLP 113
Query: 202 GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQE-SPWHSPLAAAFVKAGEEL 260
G W Y D LPYF+K+E + YH G ++V ++PL A V+AG +
Sbjct: 114 GLEDWTYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQA 170
Query: 261 GY-ENRDINGERQTGFMIAQGTIR-RGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFD 318
GY D+NG +Q GF T+ +G R ST++ +L + R L I ++LF+
Sbjct: 171 GYPRTEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDTAKKRSTLTIVTHALTDKILFE 230
Query: 319 KSGPVPKAVGIEILRDGRKHII--RAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIP 376
+AVG+ L+ + + RA+KE+I S+GAI SPQLL SG+GP L+ L+IP
Sbjct: 231 GK----RAVGVSYLQGSTEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIP 286
Query: 377 IIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTLSVALQYILNERGPLTSLGG 433
++ +L VG NLQDH+ L L + PV+ + ++ +++ N G + +
Sbjct: 287 VVHDLPGVGENLQDHLEL-YLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTG-IGASNQ 344
Query: 434 VEGLAFVNTK 443
E F+ T+
Sbjct: 345 FEAGGFIRTR 354
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 144/290 (49%), Gaps = 48/290 (16%)
Query: 657 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLC 715
L+ SG+GP L+ L+IP++ +L VG NLQDH+ L L + PV+ Y LL
Sbjct: 268 LLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPVSL----YPSLLW 322
Query: 716 LSERTDDSTY-----STYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRI 770
++ + + + F ++++ +P I+ ++ + +
Sbjct: 323 WNQPAIGAEWLFNGTGIGASNQFEAGGFIRTREEFEWPNIQYHF-------------LPV 369
Query: 771 AFNVSASAAFKKY----------------IRLQSKNPLHYPLIEPNYFQHRRDIETLIEG 814
A N + S K++ ++L+SK+P +P I NY +D + +G
Sbjct: 370 AINYNGSNGVKEHGFQAHMGSMRSPSRGRVQLKSKDPRQHPSILFNYMATEQDWQEFRDG 429
Query: 815 IRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMG 874
IR+ + A + R + PG E+ +DE + +R T +HP+ +CKMG
Sbjct: 430 IRLTREIMQQPALDPFRGREI---SPG---IEVQTDEQLDKFVREHAETAFHPSCSCKMG 483
Query: 875 PPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
TD AVVD + RV+G+ GLRV+DASIMPII +GN NAPTIM+ EK AD
Sbjct: 484 --TDDMAVVDGQGRVHGMQGLRVVDASIMPIITTGNLNAPTIMMAEKIAD 531
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 939 ATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
TD AVVD + RV+G+ GLRV+DASIMPII +GN NAPTIM+ EK AD
Sbjct: 483 GTDDMAVVDGQGRVHGMQGLRVVDASIMPIITTGNLNAPTIMMAEKIAD 531
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 480 LVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKE--RYQTL 536
L+ SG+GP L+ L+IP++ +L VG NLQDH+ L L + PV+ +
Sbjct: 268 LLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELY-LQYACTQPVSLYPSLLWWNQP 326
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRK 595
++ +++ N G + + E F+ T+ +WP++Q+HF P ++N +G +++
Sbjct: 327 AIGAEWLFNGTG-IGASNQFEAGGFIRTR---EEFEWPNIQYHFLPVAINYNGSNGVKE 381
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,119,944
Number of Sequences: 539616
Number of extensions: 18795244
Number of successful extensions: 45326
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 43512
Number of HSP's gapped (non-prelim): 832
length of query: 1049
length of database: 191,569,459
effective HSP length: 128
effective length of query: 921
effective length of database: 122,498,611
effective search space: 112821220731
effective search space used: 112821220731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)