Query psy4102
Match_columns 1049
No_of_seqs 572 out of 3570
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 17:02:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 2E-102 5E-107 893.6 47.7 566 87-999 54-622 (623)
2 TIGR01810 betA choline dehydro 100.0 7.7E-74 1.7E-78 691.2 46.6 296 92-402 1-303 (532)
3 PRK02106 choline dehydrogenase 100.0 9.1E-73 2E-77 685.4 47.3 300 88-402 3-310 (560)
4 COG2303 BetA Choline dehydroge 100.0 1.4E-65 3E-70 613.6 37.7 302 88-402 5-314 (542)
5 PLN02785 Protein HOTHEAD 100.0 1.5E-64 3.2E-69 607.7 40.9 274 88-401 53-337 (587)
6 PF00732 GMC_oxred_N: GMC oxid 100.0 4.7E-48 1E-52 433.8 12.4 289 91-391 1-295 (296)
7 TIGR02462 pyranose_ox pyranose 100.0 3E-36 6.6E-41 355.3 36.0 272 91-401 1-324 (544)
8 KOG1238|consensus 99.9 2.2E-26 4.7E-31 266.4 8.2 237 599-898 250-504 (623)
9 PF05199 GMC_oxred_C: GMC oxid 99.9 3.4E-24 7.4E-29 213.8 10.0 142 779-985 2-144 (144)
10 PF00732 GMC_oxred_N: GMC oxid 99.6 1.1E-16 2.4E-21 179.8 4.9 91 599-690 190-295 (296)
11 PLN02785 Protein HOTHEAD 99.6 3.6E-16 7.9E-21 189.1 9.0 309 610-993 228-580 (587)
12 TIGR01810 betA choline dehydro 99.6 5.3E-16 1.2E-20 188.0 9.4 313 599-992 191-529 (532)
13 PRK02106 choline dehydrogenase 99.6 8.9E-16 1.9E-20 187.2 9.1 315 599-993 198-535 (560)
14 PRK12835 3-ketosteroid-delta-1 99.5 1.8E-13 4E-18 166.6 17.5 65 293-360 217-282 (584)
15 PRK12845 3-ketosteroid-delta-1 99.5 2.4E-13 5.2E-18 164.5 16.2 63 294-360 222-284 (564)
16 PRK07121 hypothetical protein; 99.5 7.7E-13 1.7E-17 159.1 18.7 67 292-361 180-246 (492)
17 PRK06481 fumarate reductase fl 99.5 6.7E-13 1.5E-17 159.7 17.5 62 294-360 195-257 (506)
18 PRK12844 3-ketosteroid-delta-1 99.4 8.2E-13 1.8E-17 160.4 15.2 64 293-360 212-275 (557)
19 PRK12837 3-ketosteroid-delta-1 99.4 1.5E-12 3.3E-17 156.9 16.9 63 294-360 179-241 (513)
20 PF00890 FAD_binding_2: FAD bi 99.4 6.5E-13 1.4E-17 156.7 11.8 62 293-360 145-208 (417)
21 COG2303 BetA Choline dehydroge 99.4 4.4E-13 9.5E-18 161.5 8.3 308 598-991 199-535 (542)
22 PRK08274 tricarballylate dehyd 99.4 3.3E-12 7.1E-17 152.8 14.3 68 293-365 135-203 (466)
23 PRK06452 sdhA succinate dehydr 99.3 1.4E-11 3E-16 150.0 17.2 55 295-354 142-198 (566)
24 PLN00128 Succinate dehydrogena 99.3 1.1E-11 2.5E-16 151.8 15.6 58 294-355 192-251 (635)
25 PRK06175 L-aspartate oxidase; 99.3 2.9E-11 6.4E-16 142.5 18.4 53 298-355 138-190 (433)
26 PRK08958 sdhA succinate dehydr 99.3 3E-11 6.5E-16 147.5 18.8 59 293-355 147-207 (588)
27 PRK07804 L-aspartate oxidase; 99.3 2.3E-11 5E-16 147.4 17.1 59 293-355 148-211 (541)
28 PRK12843 putative FAD-binding 99.3 1.8E-11 3.9E-16 149.5 16.2 64 293-360 225-288 (578)
29 PRK09078 sdhA succinate dehydr 99.3 2.4E-11 5.3E-16 148.7 16.5 58 294-355 154-213 (598)
30 PTZ00139 Succinate dehydrogena 99.3 2.4E-11 5.3E-16 148.9 15.8 59 293-355 170-230 (617)
31 PRK07843 3-ketosteroid-delta-1 99.3 3.4E-11 7.3E-16 146.5 16.8 65 294-362 213-277 (557)
32 PLN02815 L-aspartate oxidase 99.3 3.1E-11 6.6E-16 146.7 16.2 53 300-355 167-223 (594)
33 PRK07573 sdhA succinate dehydr 99.3 3E-11 6.5E-16 148.6 15.9 54 297-355 178-233 (640)
34 PRK07395 L-aspartate oxidase; 99.3 2.5E-11 5.4E-16 146.9 14.4 53 300-355 146-198 (553)
35 PRK12834 putative FAD-binding 99.3 5.6E-11 1.2E-15 144.7 17.5 36 88-124 2-37 (549)
36 TIGR01813 flavo_cyto_c flavocy 99.3 5.2E-11 1.1E-15 141.4 16.7 65 291-359 132-197 (439)
37 PRK06263 sdhA succinate dehydr 99.3 3.8E-11 8.3E-16 145.9 14.5 58 294-355 139-198 (543)
38 PRK05945 sdhA succinate dehydr 99.3 1E-10 2.2E-15 143.0 18.0 58 293-355 139-198 (575)
39 PTZ00306 NADH-dependent fumara 99.3 7.5E-11 1.6E-15 154.2 17.8 55 302-357 560-623 (1167)
40 PRK12839 hypothetical protein; 99.2 7E-11 1.5E-15 143.7 15.8 63 294-359 219-281 (572)
41 PRK08626 fumarate reductase fl 99.2 9.7E-11 2.1E-15 144.4 16.3 56 295-355 164-221 (657)
42 PRK12842 putative succinate de 99.2 7.9E-11 1.7E-15 144.0 15.4 63 295-361 220-282 (574)
43 PRK07057 sdhA succinate dehydr 99.2 1.1E-10 2.3E-15 142.9 16.3 58 294-355 153-212 (591)
44 PRK08641 sdhA succinate dehydr 99.2 2.2E-10 4.7E-15 140.1 18.1 49 303-355 151-201 (589)
45 PRK06134 putative FAD-binding 99.2 2.1E-10 4.6E-15 140.2 17.9 63 294-360 222-284 (581)
46 TIGR01176 fum_red_Fp fumarate 99.2 1.3E-10 2.8E-15 141.6 15.7 51 300-355 144-196 (580)
47 PRK09231 fumarate reductase fl 99.2 1.6E-10 3.4E-15 141.1 15.8 51 300-355 145-197 (582)
48 PRK08205 sdhA succinate dehydr 99.2 2.9E-10 6.3E-15 139.1 16.6 63 292-355 143-207 (583)
49 TIGR00551 nadB L-aspartate oxi 99.2 2.2E-10 4.7E-15 137.5 15.1 57 294-355 133-190 (488)
50 PRK08275 putative oxidoreducta 99.2 5.5E-10 1.2E-14 136.0 18.6 60 292-355 140-201 (554)
51 PRK09077 L-aspartate oxidase; 99.2 2.5E-10 5.3E-15 138.4 15.3 57 298-355 148-208 (536)
52 PRK07803 sdhA succinate dehydr 99.2 2E-10 4.4E-15 141.3 14.3 47 304-355 166-214 (626)
53 TIGR01812 sdhA_frdA_Gneg succi 99.2 4.3E-10 9.3E-15 137.7 17.0 57 294-355 134-192 (566)
54 PRK06069 sdhA succinate dehydr 99.2 4.8E-10 1E-14 137.2 16.9 51 300-355 149-201 (577)
55 PRK07512 L-aspartate oxidase; 99.1 3.8E-10 8.1E-15 136.0 15.1 56 295-355 142-198 (513)
56 PRK11101 glpA sn-glycerol-3-ph 99.1 5E-10 1.1E-14 135.9 16.2 62 297-364 157-220 (546)
57 PRK08071 L-aspartate oxidase; 99.1 3.7E-10 8E-15 136.0 14.8 49 302-355 142-191 (510)
58 TIGR01811 sdhA_Bsu succinate d 99.1 3.4E-10 7.3E-15 138.5 14.5 51 301-355 145-197 (603)
59 PRK06854 adenylylsulfate reduc 99.1 9.6E-10 2.1E-14 134.9 18.0 55 295-354 138-195 (608)
60 PF01266 DAO: FAD dependent ox 99.1 1.8E-10 3.8E-15 132.4 9.4 64 291-364 149-212 (358)
61 PRK13800 putative oxidoreducta 99.0 4.9E-09 1.1E-13 134.4 19.3 50 301-355 155-206 (897)
62 TIGR02061 aprA adenosine phosp 99.0 8.1E-09 1.8E-13 125.8 19.3 55 298-354 135-191 (614)
63 PF03486 HI0933_like: HI0933-l 99.0 7.5E-10 1.6E-14 128.4 8.4 113 251-382 80-192 (409)
64 COG2081 Predicted flavoprotein 99.0 2.2E-09 4.9E-14 119.2 11.4 91 250-358 81-171 (408)
65 PRK08401 L-aspartate oxidase; 98.9 1.2E-08 2.7E-13 121.7 17.1 55 291-355 122-176 (466)
66 COG1053 SdhA Succinate dehydro 98.9 6E-09 1.3E-13 125.1 12.9 97 253-354 97-202 (562)
67 COG0579 Predicted dehydrogenas 98.9 1E-08 2.3E-13 117.8 13.6 120 236-366 90-222 (429)
68 TIGR01373 soxB sarcosine oxida 98.9 7.8E-09 1.7E-13 121.6 12.9 61 295-364 189-249 (407)
69 PRK04176 ribulose-1,5-biphosph 98.9 9.8E-09 2.1E-13 112.3 12.6 58 293-354 108-173 (257)
70 TIGR03329 Phn_aa_oxid putative 98.9 4E-09 8.8E-14 125.9 10.4 37 88-124 22-59 (460)
71 TIGR02485 CobZ_N-term precorri 98.9 9.7E-09 2.1E-13 121.7 13.1 64 292-360 126-189 (432)
72 PRK12409 D-amino acid dehydrog 98.9 1.1E-08 2.3E-13 120.6 13.3 34 91-125 2-35 (410)
73 PLN02661 Putative thiazole syn 98.9 9.9E-09 2.2E-13 114.8 11.8 36 89-124 91-126 (357)
74 TIGR00292 thiazole biosynthesi 98.9 1.4E-08 3.1E-13 110.7 11.8 35 89-124 20-54 (254)
75 PTZ00383 malate:quinone oxidor 98.8 1.9E-08 4.2E-13 119.7 12.9 61 295-365 217-283 (497)
76 PRK00711 D-amino acid dehydrog 98.8 2.5E-08 5.4E-13 117.7 13.5 60 294-363 206-265 (416)
77 PRK11728 hydroxyglutarate oxid 98.8 3.7E-08 8E-13 115.4 14.3 61 294-365 154-214 (393)
78 TIGR01377 soxA_mon sarcosine o 98.8 5.1E-08 1.1E-12 113.5 14.9 34 91-125 1-34 (380)
79 PLN02464 glycerol-3-phosphate 98.8 4.6E-08 9.9E-13 120.4 15.1 65 295-363 238-304 (627)
80 TIGR01320 mal_quin_oxido malat 98.8 3.6E-08 7.8E-13 117.7 13.7 65 295-365 184-250 (483)
81 PF01946 Thi4: Thi4 family; PD 98.8 2E-08 4.3E-13 103.3 9.0 35 89-124 16-50 (230)
82 COG0029 NadB Aspartate oxidase 98.8 7E-08 1.5E-12 109.8 13.9 100 251-354 90-196 (518)
83 PRK05257 malate:quinone oxidor 98.8 7.9E-08 1.7E-12 114.9 14.9 38 88-125 3-41 (494)
84 PRK13339 malate:quinone oxidor 98.7 2.4E-07 5.1E-12 110.1 17.3 60 300-365 196-257 (497)
85 COG1635 THI4 Ribulose 1,5-bisp 98.7 9.3E-08 2E-12 97.5 10.8 34 90-124 30-63 (262)
86 PF12831 FAD_oxidored: FAD dep 98.7 1.1E-08 2.4E-13 120.8 4.6 63 294-364 95-157 (428)
87 PRK13369 glycerol-3-phosphate 98.7 1.5E-07 3.3E-12 113.5 14.5 57 297-360 163-220 (502)
88 TIGR03364 HpnW_proposed FAD de 98.7 8.7E-08 1.9E-12 111.1 11.7 33 91-124 1-33 (365)
89 COG3573 Predicted oxidoreducta 98.7 9.8E-08 2.1E-12 102.1 10.3 64 294-362 158-236 (552)
90 PRK12266 glpD glycerol-3-phosp 98.7 3.1E-07 6.7E-12 110.8 16.1 39 87-126 3-41 (508)
91 COG0578 GlpA Glycerol-3-phosph 98.6 3.6E-07 7.8E-12 107.3 15.5 64 297-367 172-237 (532)
92 PRK13977 myosin-cross-reactive 98.6 3.6E-07 7.8E-12 108.4 15.4 60 295-354 232-293 (576)
93 PRK11259 solA N-methyltryptoph 98.6 1.6E-07 3.5E-12 109.3 12.5 34 90-124 3-36 (376)
94 KOG2404|consensus 98.6 1.1E-07 2.4E-12 101.4 9.4 48 303-355 159-207 (477)
95 PRK10157 putative oxidoreducta 98.6 8.8E-08 1.9E-12 113.2 9.4 64 290-364 109-172 (428)
96 PTZ00363 rab-GDP dissociation 98.6 5.5E-07 1.2E-11 105.8 14.4 42 87-129 1-42 (443)
97 PRK05192 tRNA uridine 5-carbox 98.5 2.5E-07 5.4E-12 110.8 10.5 35 89-124 3-37 (618)
98 PRK10015 oxidoreductase; Provi 98.5 2.8E-07 6E-12 108.9 9.8 36 89-125 4-39 (429)
99 KOG2415|consensus 98.5 3.7E-07 8.1E-12 100.5 9.2 82 287-372 181-276 (621)
100 COG0644 FixC Dehydrogenases (f 98.5 6.6E-07 1.4E-11 104.8 10.9 38 89-127 2-39 (396)
101 PF06039 Mqo: Malate:quinone o 98.4 4.8E-06 1E-10 95.0 16.9 66 295-365 188-254 (488)
102 PF01134 GIDA: Glucose inhibit 98.4 5.8E-07 1.3E-11 102.4 8.8 52 294-354 100-152 (392)
103 KOG2820|consensus 98.4 1.7E-06 3.7E-11 93.6 11.5 61 295-362 159-219 (399)
104 COG0665 DadA Glycine/D-amino a 98.4 2.4E-06 5.2E-11 99.7 14.0 37 88-125 2-38 (387)
105 PRK05675 sdhA succinate dehydr 98.4 2E-06 4.4E-11 105.1 13.7 58 294-355 131-190 (570)
106 PRK01747 mnmC bifunctional tRN 98.4 1.1E-06 2.4E-11 109.7 10.7 34 90-124 260-293 (662)
107 KOG0042|consensus 98.3 7.5E-07 1.6E-11 101.4 7.2 58 299-361 234-293 (680)
108 TIGR00275 flavoprotein, HI0933 98.3 2.3E-06 4.9E-11 100.3 11.6 58 290-357 106-163 (400)
109 COG1233 Phytoene dehydrogenase 98.3 6E-06 1.3E-10 99.2 13.9 38 90-128 3-40 (487)
110 PF13738 Pyr_redox_3: Pyridine 98.3 2.9E-06 6.3E-11 89.5 9.5 64 291-363 84-147 (203)
111 KOG1298|consensus 98.3 2.6E-06 5.6E-11 93.4 8.9 52 298-355 157-209 (509)
112 PRK07364 2-octaprenyl-6-methox 98.2 1.2E-05 2.6E-10 94.9 14.6 38 87-125 15-52 (415)
113 TIGR02730 carot_isom carotene 98.2 1.6E-05 3.5E-10 95.9 15.6 60 293-360 233-292 (493)
114 PLN02172 flavin-containing mon 98.2 1.1E-05 2.4E-10 95.8 13.7 69 290-364 112-183 (461)
115 PRK07208 hypothetical protein; 98.2 4.8E-05 1E-09 91.6 19.2 40 88-128 2-41 (479)
116 PRK06185 hypothetical protein; 98.2 1.7E-05 3.6E-10 93.5 14.9 66 293-365 112-178 (407)
117 TIGR01816 sdhA_forward succina 98.2 1.2E-05 2.5E-10 98.5 13.7 60 291-355 121-182 (565)
118 TIGR02734 crtI_fam phytoene de 98.1 2.2E-05 4.8E-10 95.1 14.2 60 293-360 223-282 (502)
119 TIGR02733 desat_CrtD C-3',4' d 98.1 3.8E-05 8.2E-10 92.8 14.9 61 294-359 237-299 (492)
120 PRK06467 dihydrolipoamide dehy 98.1 1.8E-05 3.8E-10 94.9 11.8 36 88-124 2-37 (471)
121 COG3380 Predicted NAD/FAD-depe 98.1 2.4E-05 5.2E-10 82.6 11.1 32 92-124 3-34 (331)
122 PLN02985 squalene monooxygenas 98.1 5.1E-05 1.1E-09 91.6 15.4 36 88-124 41-76 (514)
123 KOG2844|consensus 98.1 2.7E-05 5.8E-10 91.0 12.2 61 294-364 192-252 (856)
124 PRK05329 anaerobic glycerol-3- 98.0 1.2E-05 2.7E-10 93.9 9.4 60 293-358 263-322 (422)
125 PF01494 FAD_binding_3: FAD bi 98.0 1E-05 2.2E-10 92.8 8.4 35 90-125 1-35 (356)
126 PRK08243 4-hydroxybenzoate 3-m 98.0 4.5E-05 9.6E-10 89.4 13.8 34 90-124 2-35 (392)
127 COG2509 Uncharacterized FAD-de 98.0 8E-05 1.7E-09 84.4 14.8 78 295-382 179-259 (486)
128 TIGR02032 GG-red-SF geranylger 98.0 3.7E-05 8E-10 85.9 12.2 34 91-125 1-34 (295)
129 TIGR00136 gidA glucose-inhibit 98.0 2.6E-05 5.7E-10 93.6 11.5 33 91-124 1-33 (617)
130 TIGR01424 gluta_reduc_2 glutat 98.0 2.7E-05 5.9E-10 92.8 11.4 33 90-123 2-34 (446)
131 PRK05976 dihydrolipoamide dehy 98.0 3.5E-05 7.6E-10 92.6 12.4 36 88-124 2-37 (472)
132 PRK07045 putative monooxygenas 98.0 5.8E-05 1.3E-09 88.3 14.0 36 89-125 4-39 (388)
133 PRK08244 hypothetical protein; 98.0 9.3E-05 2E-09 89.4 15.9 35 90-125 2-36 (493)
134 PRK06416 dihydrolipoamide dehy 98.0 3.8E-05 8.3E-10 92.0 12.1 35 89-124 3-37 (462)
135 PRK05249 soluble pyridine nucl 98.0 3.9E-05 8.6E-10 91.9 11.8 35 89-124 4-38 (461)
136 COG1249 Lpd Pyruvate/2-oxoglut 98.0 7.6E-05 1.6E-09 87.7 13.7 36 88-124 2-37 (454)
137 TIGR02023 BchP-ChlP geranylger 97.9 6.6E-05 1.4E-09 87.8 13.2 32 91-123 1-32 (388)
138 PRK06184 hypothetical protein; 97.9 0.00011 2.5E-09 88.9 15.7 34 90-124 3-36 (502)
139 PRK07233 hypothetical protein; 97.9 6.1E-05 1.3E-09 89.3 12.9 36 92-128 1-36 (434)
140 COG0445 GidA Flavin-dependent 97.9 1.4E-05 3.1E-10 92.1 6.7 35 89-124 3-37 (621)
141 KOG4254|consensus 97.9 4.6E-05 1E-09 85.6 10.1 62 293-362 268-329 (561)
142 TIGR02731 phytoene_desat phyto 97.9 6.9E-05 1.5E-09 89.6 12.6 36 92-128 1-36 (453)
143 TIGR03378 glycerol3P_GlpB glyc 97.9 6.5E-05 1.4E-09 86.9 11.6 62 295-362 269-330 (419)
144 PRK06126 hypothetical protein; 97.9 0.00022 4.7E-09 87.4 16.4 36 88-124 5-40 (545)
145 PRK06847 hypothetical protein; 97.9 0.00019 4.1E-09 83.5 15.2 35 89-124 3-37 (375)
146 PRK11445 putative oxidoreducta 97.8 0.00027 5.8E-09 81.6 15.3 32 91-124 2-33 (351)
147 PRK06183 mhpA 3-(3-hydroxyphen 97.8 0.00026 5.6E-09 86.5 15.9 36 88-124 8-43 (538)
148 TIGR02360 pbenz_hydroxyl 4-hyd 97.8 0.00024 5.2E-09 83.1 14.5 34 90-124 2-35 (390)
149 PLN02507 glutathione reductase 97.8 7.9E-05 1.7E-09 89.9 10.7 34 88-122 23-56 (499)
150 COG0654 UbiH 2-polyprenyl-6-me 97.8 0.00018 3.9E-09 84.1 13.4 33 90-123 2-34 (387)
151 PRK07333 2-octaprenyl-6-methox 97.8 0.00039 8.5E-09 81.7 16.1 35 90-124 1-36 (403)
152 TIGR03377 glycerol3P_GlpA glyc 97.8 8.4E-05 1.8E-09 90.3 10.1 62 297-364 136-199 (516)
153 PRK07190 hypothetical protein; 97.7 0.00026 5.6E-09 85.1 13.9 35 89-124 4-38 (487)
154 PRK06617 2-octaprenyl-6-methox 97.7 0.00042 9E-09 80.7 14.8 33 91-124 2-34 (374)
155 PRK06834 hypothetical protein; 97.7 0.00043 9.3E-09 83.3 15.1 34 90-124 3-36 (488)
156 TIGR01988 Ubi-OHases Ubiquinon 97.7 0.00016 3.4E-09 84.3 11.2 33 92-125 1-33 (385)
157 PRK07538 hypothetical protein; 97.7 0.00036 7.9E-09 82.3 13.2 32 92-124 2-33 (413)
158 TIGR02462 pyranose_ox pyranose 97.6 0.00011 2.3E-09 88.4 8.0 64 929-993 480-543 (544)
159 PF13450 NAD_binding_8: NAD(P) 97.6 6E-05 1.3E-09 64.6 4.3 32 95-127 1-32 (68)
160 KOG2665|consensus 97.6 0.0003 6.5E-09 75.7 10.3 211 88-364 46-266 (453)
161 PRK08132 FAD-dependent oxidore 97.6 0.0007 1.5E-08 83.0 15.2 36 88-124 21-56 (547)
162 COG2072 TrkA Predicted flavopr 97.6 0.00027 5.9E-09 83.7 11.1 37 88-125 6-43 (443)
163 TIGR02732 zeta_caro_desat caro 97.6 0.00029 6.2E-09 84.5 11.0 62 297-359 227-289 (474)
164 PF05199 GMC_oxred_C: GMC oxid 97.5 2.4E-05 5.1E-10 77.8 0.7 51 870-921 93-143 (144)
165 PF04820 Trp_halogenase: Trypt 97.5 0.00026 5.7E-09 84.2 9.1 56 289-352 154-209 (454)
166 PLN02487 zeta-carotene desatur 97.5 0.0021 4.5E-08 78.2 16.6 62 297-359 303-365 (569)
167 PLN00093 geranylgeranyl diphos 97.5 0.0001 2.2E-09 87.5 5.4 36 88-124 37-72 (450)
168 PLN02612 phytoene desaturase 97.5 0.0011 2.4E-08 81.2 14.4 38 89-127 92-129 (567)
169 PF00743 FMO-like: Flavin-bind 97.4 0.00029 6.3E-09 85.1 8.1 34 92-126 3-36 (531)
170 KOG2852|consensus 97.4 0.00016 3.4E-09 76.9 4.9 63 295-364 154-217 (380)
171 TIGR02352 thiamin_ThiO glycine 97.4 0.00081 1.8E-08 76.8 11.2 56 294-359 142-197 (337)
172 COG0562 Glf UDP-galactopyranos 97.4 0.00018 3.9E-09 78.0 5.0 38 90-128 1-38 (374)
173 KOG2853|consensus 97.4 0.0019 4.1E-08 70.3 12.6 38 88-125 84-124 (509)
174 PRK06116 glutathione reductase 97.4 0.00017 3.6E-09 86.2 4.9 36 88-124 2-37 (450)
175 PRK15317 alkyl hydroperoxide r 97.3 0.0014 3.1E-08 79.6 12.6 34 88-122 209-242 (517)
176 PRK07845 flavoprotein disulfid 97.3 0.0012 2.6E-08 79.1 11.3 32 92-124 3-34 (466)
177 TIGR01421 gluta_reduc_1 glutat 97.3 0.00021 4.5E-09 85.2 4.5 35 89-124 1-35 (450)
178 PRK08010 pyridine nucleotide-d 97.3 0.00023 5E-09 84.8 4.8 36 89-125 2-37 (441)
179 KOG2311|consensus 97.3 0.00032 6.9E-09 79.3 5.5 78 300-391 136-218 (679)
180 PRK08020 ubiF 2-octaprenyl-3-m 97.3 0.00024 5.2E-09 83.2 4.8 36 88-124 3-38 (391)
181 PRK06370 mercuric reductase; V 97.3 0.00025 5.4E-09 85.0 5.0 37 87-124 2-38 (463)
182 PRK08773 2-octaprenyl-3-methyl 97.2 0.00029 6.3E-09 82.5 5.2 36 88-124 4-39 (392)
183 PRK06115 dihydrolipoamide dehy 97.2 0.00022 4.8E-09 85.5 4.2 34 90-124 3-36 (466)
184 PTZ00058 glutathione reductase 97.2 0.00024 5.2E-09 86.3 4.4 35 88-123 46-80 (561)
185 TIGR02028 ChlP geranylgeranyl 97.2 0.00026 5.6E-09 83.1 4.4 33 91-124 1-33 (398)
186 PTZ00367 squalene epoxidase; P 97.2 0.00061 1.3E-08 82.9 7.5 36 88-124 31-66 (567)
187 PRK07608 ubiquinone biosynthes 97.2 0.00031 6.8E-09 82.0 4.9 36 89-125 4-39 (388)
188 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.00036 7.8E-09 80.4 5.2 36 91-127 2-37 (377)
189 PRK07494 2-octaprenyl-6-methox 97.2 0.00037 8.1E-09 81.5 5.1 35 89-124 6-40 (388)
190 PRK08013 oxidoreductase; Provi 97.2 0.00035 7.6E-09 82.1 4.9 35 90-125 3-37 (400)
191 PRK09126 hypothetical protein; 97.2 0.00033 7.1E-09 82.1 4.5 35 90-125 3-37 (392)
192 PRK07251 pyridine nucleotide-d 97.2 0.00035 7.7E-09 83.1 4.9 34 90-124 3-36 (438)
193 PLN02463 lycopene beta cyclase 97.1 0.00045 9.7E-09 81.8 5.3 36 88-124 26-61 (447)
194 PRK05714 2-octaprenyl-3-methyl 97.1 0.00041 8.9E-09 81.6 4.9 34 90-124 2-35 (405)
195 PF13434 K_oxygenase: L-lysine 97.1 0.00082 1.8E-08 76.8 7.0 35 90-124 2-36 (341)
196 KOG1399|consensus 97.1 0.0028 6.2E-08 74.4 11.4 34 91-125 7-40 (448)
197 PLN02546 glutathione reductase 97.1 0.00038 8.1E-09 84.7 4.2 34 88-122 77-110 (558)
198 PRK07818 dihydrolipoamide dehy 97.1 0.00048 1E-08 82.6 4.9 35 89-124 3-37 (466)
199 KOG0029|consensus 97.1 0.00053 1.1E-08 81.8 4.9 40 88-128 13-52 (501)
200 TIGR03143 AhpF_homolog putativ 97.1 0.0005 1.1E-08 84.1 4.9 36 88-124 2-37 (555)
201 PRK08849 2-octaprenyl-3-methyl 97.1 0.00052 1.1E-08 80.2 4.8 34 90-124 3-36 (384)
202 PRK09897 hypothetical protein; 97.0 0.0079 1.7E-07 72.6 14.7 35 91-125 2-37 (534)
203 TIGR01350 lipoamide_DH dihydro 97.0 0.00057 1.2E-08 81.9 5.1 33 90-123 1-33 (461)
204 PLN02697 lycopene epsilon cycl 97.0 0.00053 1.2E-08 82.5 4.6 35 88-123 106-140 (529)
205 PRK06327 dihydrolipoamide dehy 97.0 0.00057 1.2E-08 82.2 4.6 35 88-123 2-36 (475)
206 PF05834 Lycopene_cycl: Lycope 97.0 0.00061 1.3E-08 79.2 4.7 33 92-125 1-35 (374)
207 TIGR01423 trypano_reduc trypan 97.0 0.0005 1.1E-08 82.6 4.0 35 89-123 2-36 (486)
208 TIGR01790 carotene-cycl lycope 97.0 0.0006 1.3E-08 79.7 4.6 32 92-124 1-32 (388)
209 TIGR02053 MerA mercuric reduct 97.0 0.00061 1.3E-08 81.7 4.6 33 91-124 1-33 (463)
210 PRK14694 putative mercuric red 97.0 0.00065 1.4E-08 81.6 4.8 36 88-124 4-39 (468)
211 TIGR01292 TRX_reduct thioredox 97.0 0.00065 1.4E-08 76.1 4.4 33 91-124 1-33 (300)
212 TIGR01989 COQ6 Ubiquinone bios 97.0 0.00071 1.5E-08 80.5 5.0 33 91-124 1-37 (437)
213 COG0492 TrxB Thioredoxin reduc 97.0 0.00066 1.4E-08 76.0 4.2 35 89-124 2-37 (305)
214 PRK06292 dihydrolipoamide dehy 96.9 0.00072 1.6E-08 81.0 4.8 34 89-123 2-35 (460)
215 PRK08850 2-octaprenyl-6-methox 96.9 0.00079 1.7E-08 79.3 4.8 33 90-123 4-36 (405)
216 PTZ00052 thioredoxin reductase 96.9 0.00076 1.6E-08 81.5 4.7 34 89-123 4-37 (499)
217 PRK13748 putative mercuric red 96.9 0.00082 1.8E-08 82.7 4.9 35 89-124 97-131 (561)
218 TIGR01984 UbiH 2-polyprenyl-6- 96.9 0.00088 1.9E-08 78.1 4.8 33 92-125 1-34 (382)
219 PRK06996 hypothetical protein; 96.9 0.001 2.2E-08 78.1 5.1 37 88-124 9-48 (398)
220 TIGR01789 lycopene_cycl lycope 96.8 0.00096 2.1E-08 77.4 4.5 33 92-124 1-34 (370)
221 PLN02268 probable polyamine ox 96.8 0.0011 2.4E-08 78.8 5.0 36 92-128 2-37 (435)
222 PTZ00153 lipoamide dehydrogena 96.8 0.0011 2.4E-08 81.8 4.6 34 89-123 115-148 (659)
223 PLN02576 protoporphyrinogen ox 96.8 0.0014 3.1E-08 79.2 5.4 41 88-128 10-50 (496)
224 PF06100 Strep_67kDa_ant: Stre 96.7 0.14 3E-06 60.0 20.9 56 298-353 216-273 (500)
225 PRK11883 protoporphyrinogen ox 96.7 0.0013 2.8E-08 78.5 4.6 36 92-128 2-39 (451)
226 PRK05732 2-octaprenyl-6-methox 96.7 0.0016 3.4E-08 76.3 4.7 35 89-123 2-38 (395)
227 PRK08163 salicylate hydroxylas 96.7 0.0016 3.5E-08 76.3 4.8 35 89-124 3-37 (396)
228 COG1231 Monoamine oxidase [Ami 96.7 0.002 4.4E-08 73.7 5.1 40 88-128 5-44 (450)
229 TIGR00562 proto_IX_ox protopor 96.7 0.0019 4E-08 77.5 5.2 38 91-128 3-43 (462)
230 PRK07236 hypothetical protein; 96.6 0.0017 3.7E-08 75.9 4.7 34 90-124 6-39 (386)
231 PRK07588 hypothetical protein; 96.6 0.0016 3.4E-08 76.3 4.3 32 92-124 2-33 (391)
232 PRK14727 putative mercuric red 96.6 0.0016 3.4E-08 78.5 4.3 35 89-124 15-49 (479)
233 PRK06753 hypothetical protein; 96.6 0.0018 3.9E-08 75.3 4.4 33 92-125 2-34 (373)
234 PF07992 Pyr_redox_2: Pyridine 96.5 0.0024 5.1E-08 67.0 4.6 32 92-124 1-32 (201)
235 PRK08294 phenol 2-monooxygenas 96.5 0.0023 5E-08 79.4 5.0 38 87-124 29-66 (634)
236 PLN02676 polyamine oxidase 96.5 0.0055 1.2E-07 73.7 8.0 39 89-128 25-64 (487)
237 PRK10262 thioredoxin reductase 96.5 0.0023 5E-08 72.8 4.5 36 88-124 4-39 (321)
238 TIGR01438 TGR thioredoxin and 96.5 0.0024 5.1E-08 76.9 4.5 34 90-124 2-35 (484)
239 PRK05335 tRNA (uracil-5-)-meth 96.4 0.0029 6.2E-08 73.3 4.3 34 91-125 3-36 (436)
240 PLN02568 polyamine oxidase 96.4 0.0037 8.1E-08 75.9 5.4 40 89-128 4-47 (539)
241 COG3349 Uncharacterized conser 96.4 0.0031 6.7E-08 73.6 4.4 35 93-128 3-37 (485)
242 PRK13512 coenzyme A disulfide 96.4 0.024 5.1E-07 67.5 12.0 33 92-124 3-36 (438)
243 COG3075 GlpB Anaerobic glycero 96.3 0.0037 7.9E-08 68.1 4.2 35 90-125 2-36 (421)
244 PRK05868 hypothetical protein; 96.2 0.0042 9.1E-08 72.2 4.7 33 92-125 3-35 (372)
245 COG1252 Ndh NADH dehydrogenase 96.2 0.043 9.2E-07 63.5 12.7 36 92-127 5-41 (405)
246 TIGR01372 soxA sarcosine oxida 96.2 0.0057 1.2E-07 79.9 6.3 63 297-365 359-422 (985)
247 PRK07846 mycothione reductase; 96.2 0.0039 8.5E-08 74.4 4.1 32 90-124 1-32 (451)
248 PRK12416 protoporphyrinogen ox 96.2 0.0043 9.3E-08 74.4 4.5 37 92-128 3-44 (463)
249 COG2907 Predicted NAD/FAD-bind 96.2 0.016 3.4E-07 63.8 8.1 37 90-128 8-44 (447)
250 TIGR03140 AhpF alkyl hydropero 96.1 0.0046 1E-07 75.1 4.5 34 88-122 210-243 (515)
251 KOG1335|consensus 96.1 0.0053 1.1E-07 68.2 4.3 35 89-124 38-72 (506)
252 TIGR03452 mycothione_red mycot 96.1 0.0045 9.7E-08 73.9 4.1 32 90-124 2-33 (452)
253 PF13454 NAD_binding_9: FAD-NA 96.1 0.13 2.7E-06 52.0 13.9 31 94-124 1-35 (156)
254 KOG4716|consensus 96.1 0.005 1.1E-07 67.1 3.8 36 88-124 17-52 (503)
255 PLN02927 antheraxanthin epoxid 96.1 0.0059 1.3E-07 75.1 4.9 36 88-124 79-114 (668)
256 COG3634 AhpF Alkyl hydroperoxi 96.1 0.027 5.9E-07 61.8 9.2 58 300-362 401-460 (520)
257 TIGR03315 Se_ygfK putative sel 96.0 0.0069 1.5E-07 77.6 5.3 38 89-127 536-573 (1012)
258 TIGR00137 gid_trmFO tRNA:m(5)U 95.9 0.007 1.5E-07 70.6 4.4 34 91-125 1-34 (433)
259 TIGR03197 MnmC_Cterm tRNA U-34 95.9 0.027 5.8E-07 65.7 9.2 54 295-359 141-194 (381)
260 KOG2614|consensus 95.9 0.008 1.7E-07 68.0 4.4 33 91-124 3-35 (420)
261 COG1148 HdrA Heterodisulfide r 95.8 0.0089 1.9E-07 68.3 4.6 36 91-127 125-160 (622)
262 KOG0405|consensus 95.8 0.0091 2E-07 65.5 4.4 36 88-124 18-53 (478)
263 PRK06475 salicylate hydroxylas 95.8 0.008 1.7E-07 70.6 4.4 32 92-124 4-35 (400)
264 KOG0685|consensus 95.8 0.0095 2.1E-07 68.4 4.6 40 89-128 20-59 (498)
265 PF00996 GDI: GDP dissociation 95.8 0.0087 1.9E-07 70.0 4.4 41 87-128 1-41 (438)
266 PRK12831 putative oxidoreducta 95.8 0.011 2.4E-07 70.8 5.3 37 89-126 139-175 (464)
267 PRK06912 acoL dihydrolipoamide 95.7 0.0087 1.9E-07 71.7 4.4 32 92-124 2-33 (458)
268 COG1232 HemY Protoporphyrinoge 95.7 0.0094 2E-07 69.8 4.4 35 93-128 3-39 (444)
269 KOG2960|consensus 95.6 0.0037 7.9E-08 63.7 0.4 35 90-124 76-111 (328)
270 TIGR03219 salicylate_mono sali 95.5 0.013 2.8E-07 69.2 4.8 34 92-125 2-35 (414)
271 PLN02529 lysine-specific histo 95.5 0.014 3.1E-07 72.7 5.0 39 89-128 159-197 (738)
272 PF00070 Pyr_redox: Pyridine n 95.5 0.021 4.7E-07 50.4 4.8 32 93-125 2-33 (80)
273 PLN02328 lysine-specific histo 95.4 0.016 3.4E-07 72.7 5.1 39 89-128 237-275 (808)
274 PRK12810 gltD glutamate syntha 95.4 0.017 3.8E-07 69.3 5.2 38 89-127 142-179 (471)
275 TIGR01316 gltA glutamate synth 95.4 0.018 3.8E-07 68.8 5.2 37 89-126 132-168 (449)
276 KOG2403|consensus 95.1 0.034 7.3E-07 64.8 6.1 36 88-124 53-88 (642)
277 TIGR02053 MerA mercuric reduct 95.1 0.084 1.8E-06 63.3 10.0 32 92-124 168-199 (463)
278 TIGR01350 lipoamide_DH dihydro 95.1 0.1 2.2E-06 62.6 10.5 33 91-124 171-203 (461)
279 PRK09853 putative selenate red 95.1 0.022 4.7E-07 72.9 4.8 38 89-127 538-575 (1019)
280 PRK12779 putative bifunctional 95.0 0.021 4.6E-07 73.7 4.8 37 90-127 306-342 (944)
281 PRK07818 dihydrolipoamide dehy 95.0 0.11 2.5E-06 62.3 10.7 61 298-364 222-285 (466)
282 PRK12769 putative oxidoreducta 95.0 0.027 5.8E-07 70.6 5.3 38 89-127 326-363 (654)
283 PRK11749 dihydropyrimidine deh 95.0 0.026 5.6E-07 67.6 4.9 36 89-125 139-174 (457)
284 PRK12775 putative trifunctiona 94.9 0.025 5.4E-07 73.7 5.0 37 90-127 430-466 (1006)
285 PRK12778 putative bifunctional 94.8 0.03 6.5E-07 71.3 5.4 36 89-125 430-465 (752)
286 KOG3855|consensus 94.8 0.027 6E-07 63.4 4.3 37 89-125 35-74 (481)
287 PLN02852 ferredoxin-NADP+ redu 94.8 0.038 8.2E-07 66.1 5.8 37 90-126 26-63 (491)
288 PRK08255 salicylyl-CoA 5-hydro 94.7 0.027 5.8E-07 71.7 4.4 33 92-124 2-35 (765)
289 PRK05976 dihydrolipoamide dehy 94.5 0.15 3.2E-06 61.4 9.8 52 299-355 231-282 (472)
290 PLN03000 amine oxidase 94.4 0.043 9.3E-07 69.0 5.1 39 89-128 183-221 (881)
291 PRK06416 dihydrolipoamide dehy 94.3 0.22 4.8E-06 59.7 11.0 55 298-358 222-276 (462)
292 PRK06370 mercuric reductase; V 94.3 0.22 4.7E-06 59.8 10.8 32 92-124 173-204 (463)
293 PRK12814 putative NADPH-depend 94.2 0.049 1.1E-06 68.0 5.2 37 89-126 192-228 (652)
294 PRK15317 alkyl hydroperoxide r 94.2 0.41 8.8E-06 58.3 12.8 57 301-362 399-457 (517)
295 PRK06567 putative bifunctional 94.1 0.063 1.4E-06 68.0 5.8 35 89-124 382-416 (1028)
296 PLN02976 amine oxidase 94.1 0.052 1.1E-06 70.7 5.0 39 89-128 692-730 (1713)
297 PRK12770 putative glutamate sy 94.0 0.066 1.4E-06 61.8 5.4 36 90-126 18-53 (352)
298 PRK09564 coenzyme A disulfide 93.9 0.37 8E-06 57.4 11.7 56 299-364 201-256 (444)
299 TIGR01318 gltD_gamma_fam gluta 93.9 0.061 1.3E-06 64.5 4.9 37 89-126 140-176 (467)
300 PRK06912 acoL dihydrolipoamide 93.8 0.39 8.5E-06 57.5 11.7 49 299-355 221-269 (458)
301 PRK04965 NADH:flavorubredoxin 93.8 0.61 1.3E-05 54.3 13.0 58 299-365 193-250 (377)
302 TIGR03140 AhpF alkyl hydropero 93.8 0.59 1.3E-05 56.9 13.2 56 301-361 400-457 (515)
303 TIGR01316 gltA glutamate synth 93.7 0.59 1.3E-05 55.8 12.7 32 92-124 274-305 (449)
304 PTZ00188 adrenodoxin reductase 93.7 0.071 1.5E-06 63.0 4.7 37 91-127 40-76 (506)
305 TIGR01317 GOGAT_sm_gam glutama 93.6 0.073 1.6E-06 64.1 4.8 35 90-125 143-177 (485)
306 PRK06115 dihydrolipoamide dehy 93.5 0.33 7.2E-06 58.3 10.3 53 299-357 225-279 (466)
307 PRK14989 nitrite reductase sub 93.4 0.52 1.1E-05 60.5 12.2 60 298-364 196-255 (847)
308 PRK12809 putative oxidoreducta 93.3 0.08 1.7E-06 66.1 4.8 37 90-127 310-346 (639)
309 KOG1276|consensus 93.1 0.11 2.4E-06 59.1 4.8 39 90-128 11-50 (491)
310 PRK12771 putative glutamate sy 92.9 0.11 2.3E-06 64.1 4.9 37 90-127 137-173 (564)
311 TIGR02374 nitri_red_nirB nitri 92.7 0.71 1.5E-05 59.1 12.0 57 299-364 192-248 (785)
312 TIGR03385 CoA_CoA_reduc CoA-di 92.6 0.8 1.7E-05 54.3 11.5 32 92-124 139-170 (427)
313 KOG1439|consensus 92.5 0.08 1.7E-06 59.7 2.7 41 87-128 1-41 (440)
314 PRK06327 dihydrolipoamide dehy 92.3 0.57 1.2E-05 56.4 10.1 53 299-357 234-287 (475)
315 TIGR01292 TRX_reduct thioredox 92.3 1.4 3.1E-05 49.0 12.7 55 302-362 190-246 (300)
316 PRK12831 putative oxidoreducta 92.2 1.2 2.6E-05 53.4 12.5 32 92-124 283-314 (464)
317 PRK13984 putative oxidoreducta 92.2 0.16 3.6E-06 63.0 5.3 37 89-126 282-318 (604)
318 TIGR03862 flavo_PP4765 unchara 92.2 0.43 9.4E-06 55.1 8.3 112 250-382 56-167 (376)
319 PTZ00058 glutathione reductase 92.0 0.54 1.2E-05 57.6 9.2 60 298-364 287-346 (561)
320 PRK09754 phenylpropionate diox 91.7 0.19 4.1E-06 59.0 4.8 36 91-126 4-40 (396)
321 PRK09564 coenzyme A disulfide 91.6 0.16 3.4E-06 60.6 4.1 33 92-124 2-35 (444)
322 PRK10262 thioredoxin reductase 91.6 2.1 4.6E-05 48.5 13.1 59 300-364 196-257 (321)
323 COG5044 MRS6 RAB proteins gera 90.8 0.31 6.8E-06 54.5 4.9 37 90-127 6-42 (434)
324 KOG2755|consensus 90.7 0.17 3.8E-06 53.8 2.7 33 93-125 2-35 (334)
325 PTZ00318 NADH dehydrogenase-li 90.5 0.29 6.3E-06 58.0 4.8 37 89-126 9-45 (424)
326 KOG4405|consensus 90.1 0.32 7E-06 54.8 4.4 40 87-127 5-44 (547)
327 TIGR01438 TGR thioredoxin and 90.0 1.1 2.5E-05 53.9 9.4 57 297-359 228-284 (484)
328 TIGR01423 trypano_reduc trypan 90.0 1.5 3.2E-05 53.0 10.3 55 297-359 239-293 (486)
329 TIGR03169 Nterm_to_SelD pyridi 89.6 0.36 7.9E-06 55.8 4.7 34 92-125 1-36 (364)
330 PRK04965 NADH:flavorubredoxin 89.0 0.42 9.2E-06 55.6 4.6 34 91-124 3-37 (377)
331 COG1206 Gid NAD(FAD)-utilizing 89.0 0.3 6.6E-06 53.7 3.0 32 92-124 5-36 (439)
332 KOG1800|consensus 88.8 0.52 1.1E-05 53.0 4.7 37 91-127 21-58 (468)
333 COG0493 GltD NADPH-dependent g 88.1 0.49 1.1E-05 56.1 4.3 36 91-127 124-159 (457)
334 PRK11749 dihydropyrimidine deh 87.9 3.8 8.2E-05 49.1 11.8 32 92-124 275-307 (457)
335 KOG3851|consensus 87.8 0.45 9.8E-06 52.1 3.4 37 88-124 37-74 (446)
336 TIGR01372 soxA sarcosine oxida 86.9 6.9 0.00015 51.6 14.2 32 92-124 319-351 (985)
337 PF02558 ApbA: Ketopantoate re 85.8 0.83 1.8E-05 45.5 4.0 31 93-124 1-31 (151)
338 COG0446 HcaD Uncharacterized N 85.1 0.89 1.9E-05 53.1 4.4 35 91-126 137-171 (415)
339 COG0569 TrkA K+ transport syst 84.1 1.1 2.3E-05 48.2 4.0 32 92-124 2-33 (225)
340 PF01210 NAD_Gly3P_dh_N: NAD-d 83.3 1.3 2.9E-05 44.6 4.1 31 93-124 2-32 (157)
341 PRK09754 phenylpropionate diox 81.9 1.5 3.2E-05 51.5 4.5 32 92-124 146-177 (396)
342 PF13434 K_oxygenase: L-lysine 81.3 3.1 6.7E-05 47.7 6.6 36 89-124 189-225 (341)
343 PF02737 3HCDH_N: 3-hydroxyacy 79.7 2.1 4.7E-05 44.2 4.2 31 93-124 2-32 (180)
344 PRK07251 pyridine nucleotide-d 79.1 2 4.4E-05 51.1 4.4 32 92-124 159-190 (438)
345 COG3486 IucD Lysine/ornithine 79.0 2.5 5.3E-05 48.4 4.6 37 88-124 3-39 (436)
346 KOG0399|consensus 78.8 2.1 4.6E-05 54.1 4.3 37 90-127 1785-1821(2142)
347 KOG0404|consensus 78.4 1.9 4.1E-05 45.1 3.2 32 91-123 9-40 (322)
348 PRK05708 2-dehydropantoate 2-r 78.1 2.2 4.8E-05 48.1 4.1 32 92-124 4-35 (305)
349 COG4529 Uncharacterized protei 77.9 2.7 5.9E-05 49.2 4.7 37 91-127 2-40 (474)
350 PF13738 Pyr_redox_3: Pyridine 77.7 2.7 5.8E-05 43.9 4.4 33 91-124 168-200 (203)
351 COG1252 Ndh NADH dehydrogenase 77.4 1.6 3.5E-05 50.7 2.8 54 298-363 218-271 (405)
352 PRK14989 nitrite reductase sub 77.4 2.6 5.6E-05 54.3 4.8 35 92-126 5-42 (847)
353 PRK07846 mycothione reductase; 77.1 2.6 5.5E-05 50.5 4.5 32 92-124 168-199 (451)
354 TIGR02374 nitri_red_nirB nitri 77.1 2.4 5.2E-05 54.4 4.4 34 93-126 1-36 (785)
355 PRK06467 dihydrolipoamide dehy 77.1 2.4 5.3E-05 51.0 4.3 32 92-124 176-207 (471)
356 PRK06249 2-dehydropantoate 2-r 76.2 2.9 6.3E-05 47.3 4.4 32 92-124 7-38 (313)
357 TIGR01421 gluta_reduc_1 glutat 76.1 2.7 5.8E-05 50.2 4.3 32 92-124 168-199 (450)
358 PF02254 TrkA_N: TrkA-N domain 75.7 3.6 7.8E-05 38.8 4.2 31 93-124 1-31 (116)
359 PRK01438 murD UDP-N-acetylmura 75.6 3 6.4E-05 50.3 4.5 32 92-124 18-49 (480)
360 PF01593 Amino_oxidase: Flavin 74.9 2.4 5.3E-05 49.4 3.5 28 100-128 1-28 (450)
361 PRK13512 coenzyme A disulfide 74.2 3.3 7.1E-05 49.3 4.3 32 92-124 150-181 (438)
362 PRK05249 soluble pyridine nucl 73.2 3.6 7.9E-05 49.3 4.4 32 92-124 177-208 (461)
363 COG1249 Lpd Pyruvate/2-oxoglut 73.1 4.5 9.8E-05 48.1 5.0 34 92-126 175-208 (454)
364 PF03721 UDPG_MGDP_dh_N: UDP-g 73.1 3.8 8.2E-05 42.6 3.9 31 93-124 3-33 (185)
365 PRK02705 murD UDP-N-acetylmura 73.0 3.6 7.9E-05 49.2 4.4 31 93-124 3-33 (459)
366 PRK12921 2-dehydropantoate 2-r 72.7 3.6 7.9E-05 46.2 4.0 29 93-122 3-31 (305)
367 PRK06129 3-hydroxyacyl-CoA deh 72.6 3.7 8E-05 46.4 4.0 32 92-124 4-35 (308)
368 PF13241 NAD_binding_7: Putati 72.2 3.9 8.4E-05 38.0 3.4 32 91-123 8-39 (103)
369 PRK06522 2-dehydropantoate 2-r 71.9 4.1 9E-05 45.6 4.3 30 93-123 3-32 (304)
370 TIGR03452 mycothione_red mycot 71.7 4.2 9E-05 48.7 4.4 32 92-124 171-202 (452)
371 PRK06292 dihydrolipoamide dehy 71.5 4.2 9E-05 48.7 4.4 32 92-124 171-202 (460)
372 PRK06718 precorrin-2 dehydroge 71.4 4.9 0.00011 42.4 4.3 31 91-122 11-41 (202)
373 PRK14106 murD UDP-N-acetylmura 70.8 4.5 9.8E-05 48.3 4.5 32 92-124 7-38 (450)
374 TIGR01424 gluta_reduc_2 glutat 70.5 4.5 9.8E-05 48.3 4.4 32 92-124 168-199 (446)
375 PRK06719 precorrin-2 dehydroge 70.3 5.6 0.00012 40.2 4.3 30 91-121 14-43 (157)
376 TIGR03143 AhpF_homolog putativ 69.5 4.9 0.00011 49.5 4.4 32 92-124 145-176 (555)
377 PF01488 Shikimate_DH: Shikima 69.5 5.7 0.00012 38.9 4.1 33 91-124 13-46 (135)
378 PTZ00153 lipoamide dehydrogena 69.3 5 0.00011 50.1 4.5 33 92-125 314-346 (659)
379 PLN02507 glutathione reductase 68.7 5.2 0.00011 48.5 4.4 32 92-124 205-236 (499)
380 PRK08293 3-hydroxybutyryl-CoA 68.6 5.5 0.00012 44.5 4.3 32 92-124 5-36 (287)
381 PRK07845 flavoprotein disulfid 68.4 5.5 0.00012 47.8 4.5 32 92-124 179-210 (466)
382 PRK06116 glutathione reductase 68.1 5.5 0.00012 47.6 4.4 32 92-124 169-200 (450)
383 PRK09260 3-hydroxybutyryl-CoA 67.4 5.7 0.00012 44.4 4.1 31 93-124 4-34 (288)
384 PLN02546 glutathione reductase 66.5 6.1 0.00013 48.5 4.4 32 92-124 254-285 (558)
385 PRK08010 pyridine nucleotide-d 66.1 6.6 0.00014 46.8 4.5 32 92-124 160-191 (441)
386 PRK07066 3-hydroxybutyryl-CoA 66.0 6.7 0.00015 44.5 4.3 31 93-124 10-40 (321)
387 PTZ00318 NADH dehydrogenase-li 66.0 6.5 0.00014 46.6 4.4 33 92-124 175-220 (424)
388 TIGR01470 cysG_Nterm siroheme 65.9 7.2 0.00016 41.2 4.2 31 92-123 11-41 (205)
389 TIGR02354 thiF_fam2 thiamine b 65.6 7.3 0.00016 41.0 4.2 34 90-124 21-55 (200)
390 PRK13748 putative mercuric red 65.6 6.4 0.00014 48.5 4.4 32 92-124 272-303 (561)
391 PRK04148 hypothetical protein; 65.5 5.5 0.00012 38.9 2.9 31 92-124 19-49 (134)
392 PRK07819 3-hydroxybutyryl-CoA 65.4 6.3 0.00014 44.0 3.9 32 92-124 7-38 (286)
393 PRK15116 sulfur acceptor prote 64.7 7.4 0.00016 42.8 4.2 34 90-124 30-64 (268)
394 PRK14620 NAD(P)H-dependent gly 64.6 7.1 0.00015 44.4 4.2 31 93-124 3-33 (326)
395 PRK08229 2-dehydropantoate 2-r 64.1 7.1 0.00015 44.7 4.1 32 92-124 4-35 (341)
396 COG1748 LYS9 Saccharopine dehy 63.9 7.6 0.00016 45.0 4.2 33 92-124 3-35 (389)
397 PRK07688 thiamine/molybdopteri 63.8 7.8 0.00017 44.4 4.3 34 90-124 24-58 (339)
398 PRK14727 putative mercuric red 63.8 7.3 0.00016 47.0 4.3 31 92-123 190-220 (479)
399 PRK14694 putative mercuric red 63.6 7.5 0.00016 46.7 4.4 32 92-124 180-211 (468)
400 PRK07530 3-hydroxybutyryl-CoA 63.3 7.9 0.00017 43.3 4.2 32 92-124 6-37 (292)
401 PRK12475 thiamine/molybdopteri 63.3 8 0.00017 44.3 4.3 34 90-124 24-58 (338)
402 PRK12770 putative glutamate sy 62.9 7.5 0.00016 44.7 4.1 32 92-124 174-206 (352)
403 PRK06035 3-hydroxyacyl-CoA deh 62.5 8.4 0.00018 43.1 4.2 32 92-124 5-36 (291)
404 COG1893 ApbA Ketopantoate redu 61.8 8.6 0.00019 43.4 4.1 31 93-124 3-33 (307)
405 cd01075 NAD_bind_Leu_Phe_Val_D 61.7 9.8 0.00021 40.1 4.3 32 92-124 30-61 (200)
406 cd05311 NAD_bind_2_malic_enz N 61.5 19 0.00042 38.6 6.6 32 92-124 27-61 (226)
407 COG0281 SfcA Malic enzyme [Ene 61.5 19 0.00041 41.6 6.7 35 89-124 198-235 (432)
408 KOG3923|consensus 61.3 8.6 0.00019 42.3 3.7 35 90-124 3-43 (342)
409 TIGR00518 alaDH alanine dehydr 60.9 9.1 0.0002 44.4 4.2 33 91-124 168-200 (370)
410 PRK14618 NAD(P)H-dependent gly 59.9 9.8 0.00021 43.3 4.3 32 92-124 6-37 (328)
411 PRK12548 shikimate 5-dehydroge 59.7 9.6 0.00021 42.6 4.0 32 92-124 128-160 (289)
412 PTZ00052 thioredoxin reductase 59.6 9 0.0002 46.4 4.1 31 92-123 184-214 (499)
413 cd01080 NAD_bind_m-THF_DH_Cycl 58.5 14 0.0003 37.8 4.6 33 90-123 44-77 (168)
414 PRK05808 3-hydroxybutyryl-CoA 58.2 10 0.00023 42.1 4.0 32 92-124 5-36 (282)
415 cd01487 E1_ThiF_like E1_ThiF_l 57.7 12 0.00027 38.3 4.1 31 93-124 2-33 (174)
416 PRK02472 murD UDP-N-acetylmura 57.3 11 0.00024 45.0 4.2 32 92-124 7-38 (447)
417 cd00401 AdoHcyase S-adenosyl-L 57.3 12 0.00026 44.0 4.3 32 92-124 204-235 (413)
418 KOG2495|consensus 57.2 5.6 0.00012 45.8 1.6 34 91-124 219-265 (491)
419 cd05191 NAD_bind_amino_acid_DH 56.7 17 0.00037 32.4 4.4 31 92-122 25-55 (86)
420 PRK00094 gpsA NAD(P)H-dependen 56.4 11 0.00025 42.6 4.0 32 92-124 3-34 (325)
421 PRK06130 3-hydroxybutyryl-CoA 56.4 12 0.00027 42.1 4.3 32 92-124 6-37 (311)
422 COG2072 TrkA Predicted flavopr 56.2 11 0.00024 44.8 4.1 33 92-125 177-209 (443)
423 cd01483 E1_enzyme_family Super 56.2 15 0.00033 36.1 4.4 31 93-124 2-33 (143)
424 PF01262 AlaDh_PNT_C: Alanine 55.4 15 0.00032 37.5 4.2 33 91-124 21-53 (168)
425 TIGR03736 PRTRC_ThiF PRTRC sys 55.1 16 0.00034 39.7 4.5 36 89-124 10-55 (244)
426 PF00899 ThiF: ThiF family; I 54.8 14 0.00031 36.0 3.9 32 92-124 4-36 (135)
427 PLN02545 3-hydroxybutyryl-CoA 54.8 14 0.0003 41.4 4.3 31 93-124 7-37 (295)
428 TIGR01763 MalateDH_bact malate 54.8 14 0.0003 41.8 4.2 30 93-123 4-34 (305)
429 PRK12549 shikimate 5-dehydroge 54.8 14 0.00031 41.1 4.4 33 91-124 128-161 (284)
430 PLN02172 flavin-containing mon 54.2 11 0.00025 45.0 3.7 32 92-124 206-237 (461)
431 PRK12810 gltD glutamate syntha 53.4 30 0.00064 41.7 7.1 62 298-364 338-411 (471)
432 PRK08328 hypothetical protein; 52.6 17 0.00037 39.2 4.3 35 90-124 27-61 (231)
433 PLN02520 bifunctional 3-dehydr 52.6 15 0.00032 44.9 4.3 31 92-123 381-411 (529)
434 cd05292 LDH_2 A subgroup of L- 51.7 16 0.00036 41.2 4.3 32 92-124 2-35 (308)
435 PF10518 TAT_signal: TAT (twin 51.3 2.4 5.2E-05 28.8 -1.5 19 40-59 2-20 (26)
436 TIGR02356 adenyl_thiF thiazole 51.0 19 0.00042 37.9 4.4 34 90-124 21-55 (202)
437 KOG2018|consensus 50.9 16 0.00035 40.2 3.7 31 93-123 77-107 (430)
438 TIGR02853 spore_dpaA dipicolin 50.6 17 0.00037 40.6 4.1 33 91-124 152-184 (287)
439 COG0686 Ald Alanine dehydrogen 50.6 14 0.0003 41.0 3.2 34 90-124 168-201 (371)
440 TIGR03026 NDP-sugDHase nucleot 50.4 16 0.00034 43.1 4.0 32 92-124 2-33 (411)
441 TIGR01915 npdG NADPH-dependent 50.3 19 0.00041 38.4 4.2 31 93-124 3-34 (219)
442 cd05291 HicDH_like L-2-hydroxy 50.2 18 0.00039 40.8 4.3 31 93-124 3-35 (306)
443 TIGR02279 PaaC-3OHAcCoADH 3-hy 50.1 17 0.00037 44.0 4.2 32 92-124 7-38 (503)
444 TIGR02355 moeB molybdopterin s 50.0 22 0.00047 38.6 4.7 35 90-124 24-58 (240)
445 PRK08017 oxidoreductase; Provi 50.0 19 0.0004 38.9 4.3 31 93-124 5-36 (256)
446 PRK14619 NAD(P)H-dependent gly 49.6 18 0.00039 40.9 4.1 32 92-124 6-37 (308)
447 TIGR00936 ahcY adenosylhomocys 49.5 19 0.00042 42.1 4.4 32 92-124 197-228 (406)
448 COG3075 GlpB Anaerobic glycero 49.5 19 0.00041 40.2 4.0 57 295-357 264-320 (421)
449 PRK14027 quinate/shikimate deh 49.3 20 0.00043 39.9 4.4 33 92-124 129-161 (283)
450 PRK12550 shikimate 5-dehydroge 48.9 21 0.00045 39.6 4.4 33 92-124 124-156 (272)
451 TIGR01318 gltD_gamma_fam gluta 48.9 37 0.00081 40.8 6.9 62 299-364 330-409 (467)
452 COG1004 Ugd Predicted UDP-gluc 48.6 18 0.0004 41.5 3.9 32 92-124 2-33 (414)
453 PLN02353 probable UDP-glucose 48.3 19 0.00042 43.1 4.3 33 92-124 3-36 (473)
454 PRK11064 wecC UDP-N-acetyl-D-m 47.8 19 0.00041 42.5 4.1 32 92-124 5-36 (415)
455 PRK11730 fadB multifunctional 47.7 18 0.00039 45.9 4.2 32 92-124 315-346 (715)
456 TIGR00507 aroE shikimate 5-deh 47.7 21 0.00045 39.5 4.2 32 92-124 119-150 (270)
457 cd05312 NAD_bind_1_malic_enz N 47.7 45 0.00097 36.9 6.6 35 90-124 25-69 (279)
458 PRK09496 trkA potassium transp 47.3 19 0.00042 42.9 4.2 32 92-124 2-33 (453)
459 PRK05690 molybdopterin biosynt 47.0 24 0.00053 38.4 4.5 36 89-124 31-66 (245)
460 TIGR02437 FadB fatty oxidation 46.9 19 0.00041 45.6 4.2 32 92-124 315-346 (714)
461 PRK00258 aroE shikimate 5-dehy 46.6 22 0.00047 39.5 4.2 32 92-124 125-157 (278)
462 cd01078 NAD_bind_H4MPT_DH NADP 46.2 25 0.00054 36.6 4.3 32 91-123 29-61 (194)
463 PRK05476 S-adenosyl-L-homocyst 46.2 23 0.00051 41.7 4.4 32 92-124 214-245 (425)
464 PF03949 Malic_M: Malic enzyme 46.1 34 0.00074 37.3 5.3 35 90-124 25-69 (255)
465 PF03807 F420_oxidored: NADP o 46.1 25 0.00053 31.8 3.8 31 93-124 2-36 (96)
466 TIGR01809 Shik-DH-AROM shikima 46.0 23 0.0005 39.4 4.3 34 91-124 126-159 (282)
467 PRK08644 thiamine biosynthesis 45.8 26 0.00056 37.3 4.4 34 90-124 28-62 (212)
468 cd00757 ThiF_MoeB_HesA_family 45.5 25 0.00055 37.7 4.3 34 90-124 21-55 (228)
469 PRK10669 putative cation:proto 45.5 21 0.00045 44.0 4.1 33 91-124 418-450 (558)
470 PRK08268 3-hydroxy-acyl-CoA de 45.4 22 0.00048 43.1 4.3 31 93-124 10-40 (507)
471 PRK06153 hypothetical protein; 45.4 23 0.00049 41.0 4.0 35 90-124 176-210 (393)
472 PF00670 AdoHcyase_NAD: S-aden 45.4 22 0.00048 35.9 3.5 32 92-124 25-56 (162)
473 PRK05562 precorrin-2 dehydroge 45.3 26 0.00057 37.5 4.3 31 90-121 25-55 (223)
474 TIGR01317 GOGAT_sm_gam glutama 45.3 23 0.00051 42.7 4.5 33 92-124 285-317 (485)
475 PRK04308 murD UDP-N-acetylmura 44.7 25 0.00053 42.0 4.5 32 92-124 7-38 (445)
476 COG3634 AhpF Alkyl hydroperoxi 44.6 17 0.00037 40.8 2.7 34 91-125 355-388 (520)
477 PRK06505 enoyl-(acyl carrier p 44.6 25 0.00054 38.7 4.3 31 92-123 9-42 (271)
478 cd01490 Ube1_repeat2 Ubiquitin 44.6 23 0.00051 41.7 4.1 31 93-124 2-38 (435)
479 PRK07531 bifunctional 3-hydrox 44.3 23 0.00051 42.8 4.2 32 92-124 6-37 (495)
480 cd01484 E1-2_like Ubiquitin ac 44.2 27 0.00058 37.8 4.2 32 93-124 2-33 (234)
481 PRK07417 arogenate dehydrogena 44.1 23 0.0005 39.3 3.9 31 93-124 3-33 (279)
482 PRK07326 short chain dehydroge 43.9 25 0.00054 37.5 4.0 32 92-124 8-40 (237)
483 PRK12778 putative bifunctional 43.9 22 0.00047 45.5 4.1 32 92-124 572-604 (752)
484 TIGR01381 E1_like_apg7 E1-like 43.8 26 0.00056 43.2 4.3 35 90-124 338-372 (664)
485 PRK06223 malate dehydrogenase; 43.8 26 0.00057 39.4 4.3 32 92-124 4-36 (307)
486 cd01339 LDH-like_MDH L-lactate 43.6 23 0.00049 39.8 3.8 31 93-124 1-32 (300)
487 PRK06057 short chain dehydroge 43.4 27 0.00058 37.8 4.2 32 92-124 9-41 (255)
488 PRK07831 short chain dehydroge 43.3 26 0.00056 38.2 4.1 32 92-124 19-52 (262)
489 PRK07774 short chain dehydroge 43.2 27 0.00059 37.5 4.2 32 92-124 8-40 (250)
490 PLN02494 adenosylhomocysteinas 42.9 29 0.00062 41.3 4.5 32 92-124 256-287 (477)
491 PF13478 XdhC_C: XdhC Rossmann 42.9 26 0.00056 34.4 3.5 32 93-125 1-32 (136)
492 cd00762 NAD_bind_malic_enz NAD 42.6 44 0.00095 36.4 5.5 33 91-124 26-69 (254)
493 PRK08306 dipicolinate synthase 42.4 28 0.00062 39.0 4.3 33 91-124 153-185 (296)
494 TIGR02441 fa_ox_alpha_mit fatt 42.4 24 0.00052 44.9 4.1 32 92-124 337-368 (737)
495 PRK12769 putative oxidoreducta 42.4 48 0.001 41.7 6.7 63 298-364 515-595 (654)
496 cd01486 Apg7 Apg7 is an E1-lik 42.4 31 0.00067 38.6 4.4 32 93-124 2-33 (307)
497 PTZ00082 L-lactate dehydrogena 42.3 31 0.00068 39.2 4.6 34 91-125 7-41 (321)
498 KOG1336|consensus 42.2 28 0.00061 40.9 4.2 56 299-361 265-320 (478)
499 PRK12749 quinate/shikimate deh 42.0 30 0.00066 38.6 4.4 33 92-124 126-158 (288)
500 COG1250 FadB 3-hydroxyacyl-CoA 41.8 26 0.00055 39.4 3.7 31 93-124 6-36 (307)
No 1
>KOG1238|consensus
Probab=100.00 E-value=2.3e-102 Score=893.56 Aligned_cols=566 Identities=52% Similarity=0.878 Sum_probs=495.2
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCCCCcccchhhccccCcCCCCCccCCCCCCcchhhccCCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSELDWKYKTEPPMGDSAYCLAMVGD 166 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 166 (1049)
...+|||||||||+|||++|.||+|+|.+||||||||+.+....++|.....++.+.++|.|.++|+ ..+|.++.++
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps---~~ac~~m~~~ 130 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPS---QHACLAMSED 130 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccC---hhhhhhhcCC
Confidence 5678999999999999999999999999999999999988777888877888889999999999999 8899999999
Q ss_pred ccccCCcceecCcHHHHhhhhhcCChhhhHHHHhcCCCCCCccChHHHHHHHhhcccCcccCCCCCCCCCcccccCCCCC
Q psy4102 167 RCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWH 246 (1049)
Q Consensus 167 ~~~~~~G~~lGGsS~in~~~~~r~~~~d~d~w~~~G~~~Ws~~~l~py~~k~E~~~~~~~~~~~~~g~~G~l~v~~~~~~ 246 (1049)
.|.|+|||++||+|.+|+|+|.|+++.|||.|++.|+++|+|+++++||+|+|....+.....++|+..|++.+....+.
T Consensus 131 ~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~ 210 (623)
T KOG1238|consen 131 RCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYP 210 (623)
T ss_pred ceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceecccccc
Confidence 99999999999999999999999999999999999999999999999999999998877777789999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccCCCCccchhHHchHHhhh-cCCcEEecCceEEEEEeccCCCCCe
Q psy4102 247 SPLAAAFVKAGEELGYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRL-RKNLHIAMETQALRLLFDKSGPVPK 325 (1049)
Q Consensus 247 ~~~~~~~~~a~~~~G~~~~d~~~~~~~G~~~~~~~~~~g~r~s~~~~~L~~~~~-~~nl~I~~~t~V~~Il~d~~~~~~r 325 (1049)
.+....+.++..++|....|+|+..+.|+...+.+.++|.|+++..+|+.++.. |+|+++..++.|++|++|.. +.+
T Consensus 211 ~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~--~~~ 288 (623)
T KOG1238|consen 211 NNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPA--GKR 288 (623)
T ss_pred CchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCC--Cce
Confidence 999999999999999888999999999999999999999999999999999877 89999999999999999952 459
Q ss_pred EEEEEEEeC-CeEEEEEcCeEEEEcCCCcchHHHHHhCCCCCccccccCCCCccccCc-cccccccccCCCcEEEEEcCc
Q psy4102 326 AVGIEILRD-GRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGP 403 (1049)
Q Consensus 326 v~GV~~~~~-g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~~~gI~v~~dlp-VG~nl~DH~~~~~~~~~~~~~ 403 (1049)
+.||++.++ |+.++++|+||||||||||+||||||+|||||++||+++||||++|+| ||+|||||+..+.+.+..+ +
T Consensus 289 a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~-~ 367 (623)
T KOG1238|consen 289 AKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTN-P 367 (623)
T ss_pred EEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCC-C
Confidence 999999988 799999999999999999999999999999999999999999999999 9999999999853333222 2
Q ss_pred ccccccchhhhHHHHHHhhccCCCcccCCcccccccccccCCCCcccCCCCCccceeccchhhhhhhccCCCcceEEEEe
Q psy4102 404 VTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSETHQGSNGIRIVFENLDKVLVIRRFSCPSCHILVLS 483 (1049)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1049)
.+..
T Consensus 368 ~~~~---------------------------------------------------------------------------- 371 (623)
T KOG1238|consen 368 VELS---------------------------------------------------------------------------- 371 (623)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1100
Q ss_pred cCCCCccccccCccccccccccCcccccccccCcceeeecCCccchhhhhhhHHHHHHHHHhCCCCCccCCcceEEEEEE
Q psy4102 484 SGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVN 563 (1049)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 563 (1049)
..+........+|+..++||+.+.+ ++.++|.+
T Consensus 372 ----------------------------------------------~~~~~~~~~~~~yl~~~~G~~~~~~-~e~~~f~~ 404 (623)
T KOG1238|consen 372 ----------------------------------------------LIRLVGITTVGQYLEGGSGPLASPG-VETLGFIN 404 (623)
T ss_pred ----------------------------------------------ccccccchHHHHHHHcCCCCcccCc-ceeeEEec
Confidence 0111234456799999999999776 89999999
Q ss_pred cCCCCCCCCCCCEEEEeecccccCCCchhhhhhcCccHHHHhhhcccCCCCCceEEEEEeecCCCeeeEEEEEEcCeeEE
Q psy4102 564 TKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNGIRIVFENLDKV 643 (1049)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~y~~p~~~r~nl~v~~il~~~~sratGV~~~~~~~~ke 643 (1049)
+.+++.+.++||+++++.+..+.++....++...+ +.+++.+.+..++..+.|+..++
T Consensus 405 t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~i~~~~l------------------- 462 (623)
T KOG1238|consen 405 TVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALG---EIYQALFGELTNSDSFVIFPKLL------------------- 462 (623)
T ss_pred cccccCcCCCCCeeEEeccccccccchhhhhhhcc---hHHHHhhhhhhcCceeEEeehhc-------------------
Confidence 99999899999999999988887765554443333 33333333222211122211111
Q ss_pred EEEeeccccchHHHHHhcCCCCHHHHhhCCCCccccCCcccccccccccceeEEEEcCccccchhhHHHHhhccccCCCC
Q psy4102 644 LVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDS 723 (1049)
Q Consensus 644 VilsaGai~SPqILlL~SGIGP~~~L~~~GIpvv~DLPVG~NLqDH~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 723 (1049)
T Consensus 463 -------------------------------------------------------------------------------- 462 (623)
T KOG1238|consen 463 -------------------------------------------------------------------------------- 462 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhccCCCCCCCCCcccccccccccHHHHHhhhhhhhccccccceEEEEEecCCCCCCCCccccCCCC
Q psy4102 724 TYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQ 803 (1049)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~l~S~~p~~~P~i~~~~l~ 803 (1049)
-+.++|++.|+|+||.++|.|++||++
T Consensus 463 -----------------------------------------------------~P~SrG~l~L~s~nP~~~P~I~~NY~~ 489 (623)
T KOG1238|consen 463 -----------------------------------------------------RPKSRGRLKLRSTNPRDNPLITPNYFT 489 (623)
T ss_pred -----------------------------------------------------CCCccceEEecCCCCCcCceeccCcCC
Confidence 245678999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhhcChhhhhccCCCCCCCCCCCcccccccHHHHHhhhcccceeEeeccCCCCCCCCCCCCCcc
Q psy4102 804 HRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVV 883 (1049)
Q Consensus 804 ~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~pg~~~~~~~s~~~~~~~~~~~s~~~~H~~st~~m~p~~d~~~vv 883 (1049)
++.|++.+++|++.+.++.++.+|+.+.......+.++|......++++|+|++|..+.+.+|+.
T Consensus 490 ~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~--------------- 554 (623)
T KOG1238|consen 490 HPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYS--------------- 554 (623)
T ss_pred CHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccC---------------
Confidence 99999999999999999999999999988877778999998889999999999999999888885
Q ss_pred ccccccccccceEeeccccCCccccCCCCCCccccccccccchhcccccCccCCCCCCcccccCCCceeeccCCceEeec
Q psy4102 884 DPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRYTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDA 963 (1049)
Q Consensus 884 D~~~~v~gv~~lRvvdas~~p~~~~~~~~~~~~~i~e~~~d~i~~~~~~tcrMGp~~d~~~VVD~~LRV~Gv~nLRVvDA 963 (1049)
+||+|||..|+++|||++||||||+|||||||
T Consensus 555 ------------------------------------------------GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDa 586 (623)
T KOG1238|consen 555 ------------------------------------------------GTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDA 586 (623)
T ss_pred ------------------------------------------------CceEeCCccCCCcccCCcceeccccCceEeec
Confidence 45677777899999999999999999999999
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHhHhhhcccccC
Q psy4102 964 SIMPIIVSGNPNAPTIMIGEKGADMKQSYLDQEEEG 999 (1049)
Q Consensus 964 SImP~~~sgNt~atv~mIaEraAd~I~~~~~~~~~~ 999 (1049)
||||.+|++|||||+||||||+||+|+++|....+.
T Consensus 587 SimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~~ 622 (623)
T KOG1238|consen 587 SIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKDG 622 (623)
T ss_pred cccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999999999999999999998876654
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=7.7e-74 Score=691.25 Aligned_cols=296 Identities=43% Similarity=0.727 Sum_probs=253.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC---CCCcccchhhc-cccCcCCCCCccCCCCCCcchhhccCCCc
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN---EISDIPSLAGY-LQLSELDWKYKTEPPMGDSAYCLAMVGDR 167 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 167 (1049)
||||||||+|||++|.||||+++.||||||+|+... .....|..... ...+.++|.|.+.|+ ....++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~ 73 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPE-------PHMNNRR 73 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccC-------CCCCCce
Confidence 899999999999999999999557999999998532 22334433222 223457899998888 4667888
Q ss_pred cccCCcceecCcHHHHhhhhhcCChhhhHHHHh-cCCCCCCccChHHHHHHHhhcccCcccCCCCCCCCCcccccCCCCC
Q psy4102 168 CNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWER-LGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWH 246 (1049)
Q Consensus 168 ~~~~~G~~lGGsS~in~~~~~r~~~~d~d~w~~-~G~~~Ws~~~l~py~~k~E~~~~~~~~~~~~~g~~G~l~v~~~~~~ 246 (1049)
+.|++|++|||+|.+|+|+|+|+.+.||+.|++ .|..+|+|++++|||+++|++... ...+|+..|++.+......
T Consensus 74 ~~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~ 150 (532)
T TIGR01810 74 VGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPAD 150 (532)
T ss_pred EeeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCC
Confidence 999999999999999999999999999999987 788999999999999999998653 2367899999998887777
Q ss_pred cHHHHHHHHHHHhcCCCC-CCCCCCCcccccccccccCCCCccchhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCe
Q psy4102 247 SPLAAAFVKAGEELGYEN-RDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPK 325 (1049)
Q Consensus 247 ~~~~~~~~~a~~~~G~~~-~d~~~~~~~G~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~r 325 (1049)
.+..+.+.++++++|++. .+.++....|++.+...+..|.|+++..+||.++.+++|++|++++.|++|+++ +++
T Consensus 151 ~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~----~~r 226 (532)
T TIGR01810 151 NPLFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE----GNR 226 (532)
T ss_pred CHHHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec----CCe
Confidence 888999999999999987 667766667777777777889999999999988878999999999999999998 479
Q ss_pred EEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCCCccccccCCCCccccCc-cccccccccCCCcEEEEEcC
Q psy4102 326 AVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDG 402 (1049)
Q Consensus 326 v~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~~~gI~v~~dlp-VG~nl~DH~~~~~~~~~~~~ 402 (1049)
++||++..+++..++.+.|+||||||+|+||+||++|||||+++|+++||++++|+| ||+|||||+.+ .+.+.++.
T Consensus 227 a~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~ 303 (532)
T TIGR01810 227 ATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQ 303 (532)
T ss_pred EEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecC
Confidence 999999876555556566899999999999999999999999999999999999999 99999999987 46676654
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=9.1e-73 Score=685.43 Aligned_cols=300 Identities=47% Similarity=0.807 Sum_probs=255.0
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC---CCCcccchhhcc-ccCcCCCCCccCCCCCCcchhhcc
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN---EISDIPSLAGYL-QLSELDWKYKTEPPMGDSAYCLAM 163 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~---~~~~~p~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~ 163 (1049)
.++|||||||||++||++|.||||++|.+|||||+|+... .....|...... ....++|.|.+.|+ ...
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~-------~~~ 75 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPE-------PHM 75 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccC-------CCC
Confidence 4579999999999999999999996699999999997531 223344433222 23467899988888 456
Q ss_pred CCCccccCCcceecCcHHHHhhhhhcCChhhhHHHHhc-CCCCCCccChHHHHHHHhhcccCcccCCCCCCCCCcccccC
Q psy4102 164 VGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL-GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQE 242 (1049)
Q Consensus 164 ~~~~~~~~~G~~lGGsS~in~~~~~r~~~~d~d~w~~~-G~~~Ws~~~l~py~~k~E~~~~~~~~~~~~~g~~G~l~v~~ 242 (1049)
.++.+.+++|++|||+|.+|+|+|+|+.+.||+.|++. |..+|+|++++|||+++|++... ...+|+..|++.+..
T Consensus 76 ~~~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~---~~~~~g~~gp~~~~~ 152 (560)
T PRK02106 76 NNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG---EDDYRGGDGPLSVTR 152 (560)
T ss_pred CCCeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC---CccccCCCCCEEEeC
Confidence 67789999999999999999999999999999999886 88899999999999999998632 345688899998876
Q ss_pred C-CCCcHHHHHHHHHHHhcCCCC-CCCCCCCcccccccccccCCCCccchhHHchHHhhhcCCcEEecCceEEEEEeccC
Q psy4102 243 S-PWHSPLAAAFVKAGEELGYEN-RDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320 (1049)
Q Consensus 243 ~-~~~~~~~~~~~~a~~~~G~~~-~d~~~~~~~G~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~ 320 (1049)
. ....+..+.|.++++++|++. .+.++....|++.+...+..|.|+++..+||.++.+++|++|+++|.|++|+++
T Consensus 153 ~~~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~-- 230 (560)
T PRK02106 153 GKPGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE-- 230 (560)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--
Confidence 5 456778889999999999987 677776677887777788899999999999988888999999999999999998
Q ss_pred CCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCCCccccccCCCCccccCc-cccccccccCCCcEEEE
Q psy4102 321 GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFI 399 (1049)
Q Consensus 321 ~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~~~gI~v~~dlp-VG~nl~DH~~~~~~~~~ 399 (1049)
+++++||++...+...++.+.|+||||||+|+||+|||+|||||+++|+++||++++|+| ||+|||||+.+. +.+.
T Consensus 231 --~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~-~~~~ 307 (560)
T PRK02106 231 --GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVY-IQYE 307 (560)
T ss_pred --CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccce-EEEE
Confidence 469999999876555555566799999999999999999999999999999999999999 999999999874 6676
Q ss_pred EcC
Q psy4102 400 VDG 402 (1049)
Q Consensus 400 ~~~ 402 (1049)
++.
T Consensus 308 ~~~ 310 (560)
T PRK02106 308 CKQ 310 (560)
T ss_pred eCC
Confidence 654
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-65 Score=613.62 Aligned_cols=302 Identities=41% Similarity=0.743 Sum_probs=263.1
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC-CCcccchhhccccC-cCCCCCccCCCCCCcchhhccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE-ISDIPSLAGYLQLS-ELDWKYKTEPPMGDSAYCLAMVG 165 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~ 165 (1049)
..+|||||||+|.+||++|.||+ ++|.+|||||+|+.... ...+|..+...... ..+|.|.++++ ...++
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-------~~~~~ 76 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPE-------PHLRG 76 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcc-------cCCCC
Confidence 56899999999999999999999 56999999999986544 44556655555555 88999999998 47889
Q ss_pred CccccCCcceecCcHHHHhhhhhcCChhhhHHHHhc-CCCCCCccChHHHHHHHhhcccCcccC-CCCCCCCCcccccCC
Q psy4102 166 DRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL-GNPGWGYKDVLPYFKKSEDNRNEYLLR-TPYHSKGGYLTVQES 243 (1049)
Q Consensus 166 ~~~~~~~G~~lGGsS~in~~~~~r~~~~d~d~w~~~-G~~~Ws~~~l~py~~k~E~~~~~~~~~-~~~~g~~G~l~v~~~ 243 (1049)
+.+.|++|++|||+|.+|+|+|+|+.+.||+.|... |..+|+|++++|||+++|++......+ ...|+..||+.+...
T Consensus 77 r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~ 156 (542)
T COG2303 77 RELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPP 156 (542)
T ss_pred ccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCC
Confidence 999999999999999999999999999999999764 779999999999999999976643222 457999999999888
Q ss_pred CCCcHHHHHHHHHHHhcCCCC-CCCCCCCcccccccccccCCCCccchhHHchHHhhhcCCcEEecCceEEEEEeccCCC
Q psy4102 244 PWHSPLAAAFVKAGEELGYEN-RDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGP 322 (1049)
Q Consensus 244 ~~~~~~~~~~~~a~~~~G~~~-~d~~~~~~~G~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~ 322 (1049)
....++...+.++.+++|++. .++++....|++.+..++.+|.|+++..+||.++.+++|++|++++.|++|+++
T Consensus 157 ~~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~---- 232 (542)
T COG2303 157 RSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE---- 232 (542)
T ss_pred CCchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE----
Confidence 667889999999999999998 778888888888887777799999999999999999999999999999999999
Q ss_pred CCeEEEEEEEeCCe--EEEEEcCeEEEEcCCCcchHHHHHhCCCCCccccccCCCCccccCc-cccccccccCCCcEEEE
Q psy4102 323 VPKAVGIEILRDGR--KHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFI 399 (1049)
Q Consensus 323 ~~rv~GV~~~~~g~--~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~~~gI~v~~dlp-VG~nl~DH~~~~~~~~~ 399 (1049)
+++++||++..++. .....+.++||||||+|+||+|||+||||+...|..+||+++.++| ||+|||||+.+. +.+.
T Consensus 233 ~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~-~~~~ 311 (542)
T COG2303 233 GDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIY-VAFE 311 (542)
T ss_pred CCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhh-hhee
Confidence 68999999986432 3445555799999999999999999999999999999999999999 999999999873 5555
Q ss_pred EcC
Q psy4102 400 VDG 402 (1049)
Q Consensus 400 ~~~ 402 (1049)
...
T Consensus 312 ~~~ 314 (542)
T COG2303 312 ATE 314 (542)
T ss_pred ccC
Confidence 443
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.5e-64 Score=607.71 Aligned_cols=274 Identities=30% Similarity=0.452 Sum_probs=211.4
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCCCCcccchhhccccCcCCCCCccCCCCCCcchhhccCCCc
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSELDWKYKTEPPMGDSAYCLAMVGDR 167 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 167 (1049)
..+|||||||||+|||++|.+|+| +.+|||||+|+.......+.... .......+|.|.+.++ ...+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q-------~~~~~~~ 122 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQ-------AFISTDG 122 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCccccc-------cccCCCc
Confidence 456999999999999999999999 48999999998532222221111 1223456899998888 3556788
Q ss_pred cccCCcceecCcHHHHhhhhhcCChhhhHHHHhcCCCCCCccChHHHHHHHhhcccCcccCCCCCCCCCcccccCCCCCc
Q psy4102 168 CNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHS 247 (1049)
Q Consensus 168 ~~~~~G~~lGGsS~in~~~~~r~~~~d~d~w~~~G~~~Ws~~~l~py~~k~E~~~~~~~~~~~~~g~~G~l~v~~~~~~~ 247 (1049)
+.++|||+|||+|++|+|+|.|+++.||+. .+|+|+++.+||++.|+... ..+...
T Consensus 123 ~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~------------------~~~~~~ 178 (587)
T PLN02785 123 VINARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIV------------------HWPKVA 178 (587)
T ss_pred eeccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcccc------------------cCCCcC
Confidence 999999999999999999999999999963 57999999999999987531 011234
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCcc---ccccccccc--CCCCccchhHHchHHhhhcCCcEEecCceEEEEEeccCCC
Q psy4102 248 PLAAAFVKAGEELGYENRDINGERQT---GFMIAQGTI--RRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGP 322 (1049)
Q Consensus 248 ~~~~~~~~a~~~~G~~~~d~~~~~~~---G~~~~~~~~--~~g~r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~ 322 (1049)
+....+.++++++|++. +++.... |.. ...++ ..|.|.+++. + .+.+.++|++|+++|.|++|++++.+.
T Consensus 179 ~~~~~~~~a~~e~G~~~--~n~~~~d~~~G~~-~g~~i~~~~g~R~saa~-l-~~~~~~~nl~Vl~~a~V~rIl~~~~~~ 253 (587)
T PLN02785 179 PWQAALRDSLLEVGVSP--FNGFTYDHVYGTK-VGGTIFDEFGRRHTAAE-L-LAAGNPNKLRVLLHATVQKIVFDTSGK 253 (587)
T ss_pred hHHHHHHHHHHHcCCCc--cCCCCCCCcccee-eeEEEeCCCCEEcCHHH-H-HhhcCCCCeEEEeCCEEEEEEEcCCCC
Confidence 56788999999999974 2221111 111 11223 4577877765 3 466778999999999999999984222
Q ss_pred CCeEEEEEEEe-CCeEEEE----EcCeEEEEcCCCcchHHHHHhCCCCCccccccCCCCccccCc-cccccccccCCCcE
Q psy4102 323 VPKAVGIEILR-DGRKHII----RAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGL 396 (1049)
Q Consensus 323 ~~rv~GV~~~~-~g~~~~v----~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~~~gI~v~~dlp-VG~nl~DH~~~~~~ 396 (1049)
.++++||++.+ +|++.++ +++|+||||||+|+||+|||+|||||+++|+++||+|++|+| ||+||+||+... +
T Consensus 254 ~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~-i 332 (587)
T PLN02785 254 RPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNS-I 332 (587)
T ss_pred CceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccc-e
Confidence 24899999976 5654443 256899999999999999999999999999999999999999 999999999873 6
Q ss_pred EEEEc
Q psy4102 397 TFIVD 401 (1049)
Q Consensus 397 ~~~~~ 401 (1049)
.+..+
T Consensus 333 ~~~~~ 337 (587)
T PLN02785 333 FVPSK 337 (587)
T ss_pred EEEeC
Confidence 66554
No 6
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=4.7e-48 Score=433.82 Aligned_cols=289 Identities=40% Similarity=0.699 Sum_probs=230.8
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCCCCcccch-hhccccCcCCCCCccCCCCCCcchhhccCCCccc
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSL-AGYLQLSELDWKYKTEPPMGDSAYCLAMVGDRCN 169 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~~~~~p~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (1049)
|||||||||++|+++|.||||+++.+|||||||+........+.. ........++|.|.+.++ ...+++.+.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 73 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQ-------PFLNGRTIN 73 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEE-------ECTTTTSEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccc-------cccccceee
Confidence 899999999999999999999966899999999976644321111 122234567788877776 567888889
Q ss_pred cCCcceecCcHHHHhhhhhcCChhhhHHHHhc-CCCCCCccChHHHHHHHhhcccCcccCCCCCCCCCcccc-cCCCCCc
Q psy4102 170 WPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL-GNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTV-QESPWHS 247 (1049)
Q Consensus 170 ~~~G~~lGGsS~in~~~~~r~~~~d~d~w~~~-G~~~Ws~~~l~py~~k~E~~~~~~~~~~~~~g~~G~l~v-~~~~~~~ 247 (1049)
+++|++|||+|.+|+++|+|+.+.||+.|... |..+|+|+++.+||+++|.+..+. ...|+.++++.+ .......
T Consensus 74 ~~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~---~~~~g~~~~~~v~~~~~~~~ 150 (296)
T PF00732_consen 74 WPRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS---SDLHGVDGPLPVSSSPPYPS 150 (296)
T ss_dssp EEEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB---GGGSCBSSSEEEHHHCSCHC
T ss_pred eecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc---ccccccccccccccccCCCC
Confidence 99999999999999999999999999999875 778899999999999999987753 667888888888 4555667
Q ss_pred HHHHHHHHHHHhcCCCC-CCCCCCCcccccccccccCCCCccchhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeE
Q psy4102 248 PLAAAFVKAGEELGYEN-RDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKA 326 (1049)
Q Consensus 248 ~~~~~~~~a~~~~G~~~-~d~~~~~~~G~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv 326 (1049)
+....+.++++++|++. .+.+.....|++.....|..|.|.++..+||.++.+++|++|+++|+|++|++++ +++++
T Consensus 151 ~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~--~~~~a 228 (296)
T PF00732_consen 151 PMNQALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDG--DGGRA 228 (296)
T ss_dssp THHHHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEET--TSTEE
T ss_pred HHHHHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeec--cccce
Confidence 78899999999999985 6666666666665555688999999999999999989999999999999999963 35799
Q ss_pred EEEEEEeC-Ce-EEEEEcCeEEEEcCCCcchHHHHHhCCCCCccccccCCCCccccCcccccccccc
Q psy4102 327 VGIEILRD-GR-KHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLSVGHNLQDHV 391 (1049)
Q Consensus 327 ~GV~~~~~-g~-~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~~~gI~v~~dlpVG~nl~DH~ 391 (1049)
+||++.+. +. ...+.++|+||||||+|+||+|||+|||||..+|+++||+++.|+|||+||||||
T Consensus 229 ~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 229 TGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred eeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 99999873 33 2444444789999999999999999999999999999999999999999999997
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=3e-36 Score=355.26 Aligned_cols=272 Identities=16% Similarity=0.194 Sum_probs=168.7
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCCCC-------cc-----cchh-----hccccCc----------
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEIS-------DI-----PSLA-----GYLQLSE---------- 143 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~~~-------~~-----p~~~-----~~~~~~~---------- 143 (1049)
|||||||+|++|+++|..|+++ |.+|+|||+|....... .+ .... ..++..+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 7999999999999999999998 89999999997654210 00 0000 0000000
Q ss_pred ---CCCCCccCCCCCCcchhhccCC------Cccc---cCCcceecCcHHHHhhhhhcCChhhhHHHHhcCCCCC--Ccc
Q psy4102 144 ---LDWKYKTEPPMGDSAYCLAMVG------DRCN---WPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGW--GYK 209 (1049)
Q Consensus 144 ---~~w~~~~~~~~~~~~~~~~~~~------~~~~---~~~G~~lGGsS~in~~~~~r~~~~d~d~w~~~G~~~W--s~~ 209 (1049)
-.|.-... .. .-.++ .... ..+-+.+||+|.+|++.+.|..+.+. .| .+ .+| +|+
T Consensus 80 ~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~ 148 (544)
T TIGR02462 80 LDPTAWSASIE------SF-FVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDA 148 (544)
T ss_pred CCccccccCCC------cc-eecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHH
Confidence 01111000 00 00001 0011 23668899999999999999998642 11 22 589 999
Q ss_pred ChHHHHHHHhhcccCcccCCCCCCCCCcccccCCCCCcHHHHHHHHHHHhcCC-CCCCCCCCCcccccccccccCCCCcc
Q psy4102 210 DVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEELGY-ENRDINGERQTGFMIAQGTIRRGSRC 288 (1049)
Q Consensus 210 ~l~py~~k~E~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~-~~~d~~~~~~~G~~~~~~~~~~g~r~ 288 (1049)
+++|||.++|++++... .. ...........+.+.+.+. |. ..... ...+..+ .|..+.++
T Consensus 149 eL~PyY~~Ae~~~gv~g----------~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~~----PlA~~~~--~c~~~ak~ 209 (544)
T TIGR02462 149 EWDRLYTKAESLIGTST----------DQ-FDESIRHNLVLRKLQDEYK--GQRDFQPL----PLACHRR--TDPTYVEW 209 (544)
T ss_pred HHHHHHHHHHHHhCCCC----------Cc-CCCcccchhHHHHHHHHhc--cccccccC----chhhhcc--CCCcccee
Confidence 99999999999987421 10 0001111222223333322 22 11000 0111110 23334555
Q ss_pred chhHHchHHhh----hcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHhC
Q psy4102 289 STSKAFLRPIR----LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVS 362 (1049)
Q Consensus 289 s~~~~~L~~~~----~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~S 362 (1049)
++..+.+..+. +++|++|++++.|++|+++.++ +++|+||.+.+ +|+..+++|+ .||||||+|+||+||++|
T Consensus 210 s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~-~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 210 HSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETN-ESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNS 287 (544)
T ss_pred cCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCC-CceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhC
Confidence 55444454433 4789999999999999998421 25899999986 6888899997 699999999999999999
Q ss_pred CCCCccccccCCCCccccC---c-cccccccccCCCcEEEEEc
Q psy4102 363 GIGPEEHLQGLNIPIIKNL---S-VGHNLQDHVGLGGLTFIVD 401 (1049)
Q Consensus 363 GIGp~~~L~~~gI~v~~dl---p-VG~nl~DH~~~~~~~~~~~ 401 (1049)
+++.......++ |. + ||||||||+... +.+.++
T Consensus 288 ~~~~~~~p~gl~-----Nss~~g~VGRnlmdh~~~~-~~~~~~ 324 (544)
T TIGR02462 288 GFGQLGRPDPTN-----PPPLLPSLGRYITEQSMTF-CQIVLS 324 (544)
T ss_pred CCCCCcCCCCcC-----CCCCCCCCCcchhcCCCcc-EEEEec
Confidence 998655444433 53 5 999999999873 555444
No 8
>KOG1238|consensus
Probab=99.93 E-value=2.2e-26 Score=266.36 Aligned_cols=237 Identities=25% Similarity=0.350 Sum_probs=153.5
Q ss_pred ccHHHHhhhcccCCC-CCceEEE------EEeecCCC-eeeEEEEEEcC-------eeEEEEEeeccccchHHHHHhcCC
Q psy4102 599 LRDRIFNTLYKPLIN-AETWTIL------PLLLRPLS-TGNGIRIVFEN-------LDKVLVIRRFSCPSCHILVLSSGI 663 (1049)
Q Consensus 599 ~r~~~~~~y~~p~~~-r~nl~v~------~il~~~~s-ratGV~~~~~~-------~~keVilsaGai~SPqILlL~SGI 663 (1049)
.|.++.++|+.|... |+||++. +|++|+.+ +++||+|++++ .+||||||||+|+||||||| |||
T Consensus 250 ~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLML-SGI 328 (623)
T KOG1238|consen 250 IRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLML-SGI 328 (623)
T ss_pred EEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHH-cCC
Confidence 577888999999977 8999755 48899755 69999999994 38899999999999999999 999
Q ss_pred CCHHHHhhCCCCccccCC-cccccccccccceeEEEEcCccccchhhHHHHhhccccCCCCccccccccchhhhhhccCC
Q psy4102 664 GPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSK 742 (1049)
Q Consensus 664 GP~~~L~~~GIpvv~DLP-VG~NLqDH~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1049)
||++||+++||||++||| ||+|||||++.+++++..+ +++....+..
T Consensus 329 GP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~-~~~~~~~~~~------------------------------- 376 (623)
T KOG1238|consen 329 GPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTN-PVELSLIRLV------------------------------- 376 (623)
T ss_pred CcHHHHHhcCCCeeccCcccccccccccccceeeecCC-Cccccccccc-------------------------------
Confidence 999999999999999999 9999999999988877655 2221110000
Q ss_pred CCCCCCCcccccccccccHHHHHhhhhhhhccccccceEEEEEecCCC-CCCCCccccCCCCChhhHHHHHHHHHHHHHh
Q psy4102 743 NPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKN-PLHYPLIEPNYFQHRRDIETLIEGIRIAFNV 821 (1049)
Q Consensus 743 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~l~S~~-p~~~P~i~~~~l~~~~D~~~l~~g~~~~~~i 821 (1049)
.+...++|+....++.. .......|++...+.+ +.++|+++..+......-+... +++ +.
T Consensus 377 ----~~~~~~~yl~~~~G~~~-----------~~~~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~-~~~---~~ 437 (623)
T KOG1238|consen 377 ----GITTVGQYLEGGSGPLA-----------SPGVETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLT-ALR---KA 437 (623)
T ss_pred ----cchHHHHHHHcCCCCcc-----------cCcceeeEEeccccccCcCCCCCeeEEeccccccccchh-hhh---hh
Confidence 00000111111111100 0000113344444443 6788988866654332111100 011 10
Q ss_pred hcChhhhhccCCCCCCCCCCCcccccccHHHHHhhhcccceeEeeccCC-CCCCCCCCCCCccccccccccccceEee
Q psy4102 822 SASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTST-CKMGPPTDPEAVVDPRLRVYGVDGLRVI 898 (1049)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~pg~~~~~~~s~~~~~~~~~~~s~~~~H~~st-~~m~p~~d~~~vvD~~~~v~gv~~lRvv 898 (1049)
.. +.++.+... ....... ..+...++|.|+|.....|+ ++..|.+++||+.||+|....++++|.+
T Consensus 438 ~~-~~y~~~~~~-----~~~~~~~-----~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~ 504 (623)
T KOG1238|consen 438 LG-EIYQALFGE-----LTNSDSF-----VIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTI 504 (623)
T ss_pred cc-hHHHHhhhh-----hhcCcee-----EEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHH
Confidence 00 111111000 0000000 01346789999999999998 8889999999999999999998888876
No 9
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.90 E-value=3.4e-24 Score=213.81 Aligned_cols=142 Identities=38% Similarity=0.582 Sum_probs=99.6
Q ss_pred ceEEEEEecCCCCCCCCccccCCCCChhhHHHHHHHHHHHHHhhcChhhhhccCCC-CCCCCCCCcccccccHHHHHhhh
Q psy4102 779 AFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRP-LLTPMPGCAMFELFSDEYWECSL 857 (1049)
Q Consensus 779 ~~~G~v~l~S~~p~~~P~i~~~~l~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~-~~~~~pg~~~~~~~s~~~~~~~~ 857 (1049)
.++|+|+|+++|+.+.|.|+++|+.++.|++.+.++++..+++.... ++.+.... .....+.+......+++.+++++
T Consensus 2 ~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T PF05199_consen 2 KSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECYI 80 (144)
T ss_dssp SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhhe
Confidence 46899999999999999999999999999999999999999999877 54432111 00000111111123344455554
Q ss_pred cccceeEeeccCCCCCCCCCCCCCccccccccccccceEeeccccCCccccCCCCCCccccccccccchhcccccCccCC
Q psy4102 858 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRYTIRPALMG 937 (1049)
Q Consensus 858 ~~~s~~~~H~~st~~m~p~~d~~~vvD~~~~v~gv~~lRvvdas~~p~~~~~~~~~~~~~i~e~~~d~i~~~~~~tcrMG 937 (1049)
+....+.+| +.+||+||
T Consensus 81 ~~~~~~~~H---------------------------------------------------------------~~Gt~~mG 97 (144)
T PF05199_consen 81 RQNVGTSWH---------------------------------------------------------------PSGTCRMG 97 (144)
T ss_dssp HHHGEECSS----------------------------------------------------------------BETT-BT
T ss_pred eeccceecc---------------------------------------------------------------cccceecc
Confidence 444333333 35677788
Q ss_pred CCCCcccccCCCceeeccCCceEeeccccCCCCCCCchhHHHHHHHHH
Q psy4102 938 PATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 985 (1049)
Q Consensus 938 p~~d~~~VVD~~LRV~Gv~nLRVvDASImP~~~sgNt~atv~mIaEra 985 (1049)
+ ++..+|||++|||||++||||+||||||+.+++||++|+|||||||
T Consensus 98 ~-~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 98 P-DPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp S-STTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred c-cCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 6 3445999999999999999999999999999999999999999997
No 10
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.63 E-value=1.1e-16 Score=179.77 Aligned_cols=91 Identities=30% Similarity=0.503 Sum_probs=76.1
Q ss_pred ccHHHHhhhcccCCCCCceEEEE------Eeec-CCCeeeEEEEEEcCe--------eEEEEEeeccccchHHHHHhcCC
Q psy4102 599 LRDRIFNTLYKPLINAETWTILP------LLLR-PLSTGNGIRIVFENL--------DKVLVIRRFSCPSCHILVLSSGI 663 (1049)
Q Consensus 599 ~r~~~~~~y~~p~~~r~nl~v~~------il~~-~~sratGV~~~~~~~--------~keVilsaGai~SPqILlL~SGI 663 (1049)
.|.++..+|+.++..++|++|++ |+++ .+.+++||+|...++ +|+||++||+|+||+|||+ |||
T Consensus 190 ~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~-SGi 268 (296)
T PF00732_consen 190 ARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLR-SGI 268 (296)
T ss_dssp CBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHH-TTE
T ss_pred hceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcc-ccc
Confidence 46777888999988888997774 7776 345899999997654 6899999999999999998 999
Q ss_pred CCHHHHhhCCCCccccCCccccccccc
Q psy4102 664 GPEEHLQGLNIPIIKNLSVGHNLQDHV 690 (1049)
Q Consensus 664 GP~~~L~~~GIpvv~DLPVG~NLqDH~ 690 (1049)
||.++|+++||++++|||||+|||||+
T Consensus 269 G~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 269 GPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp E-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred ccHHHHHHcCCCceeeCcchhchhccc
Confidence 999999999999999999999999998
No 11
>PLN02785 Protein HOTHEAD
Probab=99.63 E-value=3.6e-16 Score=189.14 Aligned_cols=309 Identities=19% Similarity=0.242 Sum_probs=188.5
Q ss_pred cCCCCCceEEEE------EeecCC---CeeeEEEEEEc-Ce----------eEEEEEeeccccchHHHHHhcCCCCHHHH
Q psy4102 610 PLINAETWTILP------LLLRPL---STGNGIRIVFE-NL----------DKVLVIRRFSCPSCHILVLSSGIGPEEHL 669 (1049)
Q Consensus 610 p~~~r~nl~v~~------il~~~~---sratGV~~~~~-~~----------~keVilsaGai~SPqILlL~SGIGP~~~L 669 (1049)
+..+++|++|+. |+|+.. .+++||+|.+. +. +||||+++|+++||||||+ |||||+++|
T Consensus 228 ~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~-SGIGp~~~L 306 (587)
T PLN02785 228 AAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLL-SGIGPKKEL 306 (587)
T ss_pred hhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHH-cCCCCHHHH
Confidence 455678887774 899753 27999999753 22 3699999999999999999 999999999
Q ss_pred hhCCCCccccCC-cccccccccccceeEEEEcCccccchhhHHHH-h-hccccCCC-Cccccccccchhhhhh-ccC-CC
Q psy4102 670 QGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKERYQVL-L-CLSERTDD-STYSTYTNTLFPRYIR-LQS-KN 743 (1049)
Q Consensus 670 ~~~GIpvv~DLP-VG~NLqDH~~~~~~~~~~~~~~t~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~~~-~~~-~~ 743 (1049)
+++||||++||| ||+|||||+++. +.+..+.+.... ..+.. . ....+... ..+... ...+..... ... ..
T Consensus 307 ~~~gIpvv~dlP~VG~NL~DHp~~~-i~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 382 (587)
T PLN02785 307 KKHKIPVVLHNEHVGKGMADNPMNS-IFVPSKAPVEQS--LIQTVGITKMGVYIEASSGFGQS-PDSIHCHHGIMSAEIG 382 (587)
T ss_pred HHcCCCeeecCCCcccchhhCcccc-eEEEeCCCchhh--hHhhhhhhccccceecccccccC-chhhhhhccccccccc
Confidence 999999999999 999999999876 344433322110 00000 0 00000000 000000 000000000 000 00
Q ss_pred -----CC--CCCCcccccccccccHH-HHHhhhhhhhccccccceEEEEEecCCCCCCCCccccCCCCChhhHHHHHHHH
Q psy4102 744 -----PL--HYPLIEPNYFQHRRDIE-TLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGI 815 (1049)
Q Consensus 744 -----p~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~v~l~S~~p~~~P~i~~~~l~~~~D~~~l~~g~ 815 (1049)
+. ..+.....|+....... ..... .........+.+||+|+|+|+||.+.|.|+++|++++.|+..+++++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~ 461 (587)
T PLN02785 383 QLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNG-GFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGI 461 (587)
T ss_pred cccccCcccccchhhhhhccCccccccccccc-ceEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHH
Confidence 00 00000000000000000 00000 00011123467899999999999999999999999999999999999
Q ss_pred HHHHHhhcChhhhhccCCCCC--CCCCCCcc-------c-ccccHHHHHhhhcccceeEeeccCCCCCCCCCCCCCcccc
Q psy4102 816 RIAFNVSASAAFQKYNSRPLL--TPMPGCAM-------F-ELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDP 885 (1049)
Q Consensus 816 ~~~~~i~~~~~~~~~~~~~~~--~~~pg~~~-------~-~~~s~~~~~~~~~~~s~~~~H~~st~~m~p~~d~~~vvD~ 885 (1049)
+..+++.++..+..+...... ....+... . ...+++.|+++++....+
T Consensus 462 r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~l~~~ir~~~~t---------------------- 519 (587)
T PLN02785 462 RTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVIT---------------------- 519 (587)
T ss_pred HHHHHHHcChhhhhhccccccccccccccccccccccCCCCCCCHHHHHHHHHHhccc----------------------
Confidence 999999988877654311100 00000000 0 000111111111111111
Q ss_pred ccccccccceEeeccccCCccccCCCCCCccccccccccchhcccccCccCCCCCCcccccCCCceeeccCCceEeeccc
Q psy4102 886 RLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRYTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASI 965 (1049)
Q Consensus 886 ~~~v~gv~~lRvvdas~~p~~~~~~~~~~~~~i~e~~~d~i~~~~~~tcrMGp~~d~~~VVD~~LRV~Gv~nLRVvDASI 965 (1049)
..|+++||+|| +|||++||||||+|||||||||
T Consensus 520 -----------------------------------------~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi 552 (587)
T PLN02785 520 -----------------------------------------IWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGST 552 (587)
T ss_pred -----------------------------------------ccCCcccccCC------CeECCCCeEeccCCeEEeeccc
Confidence 11345889998 5999999999999999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHhHhhh
Q psy4102 966 MPIIVSGNPNAPTIMIGEKGADMKQSYL 993 (1049)
Q Consensus 966 mP~~~sgNt~atv~mIaEraAd~I~~~~ 993 (1049)
||.+|++|||+|+||||||+||+|++++
T Consensus 553 ~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 553 FDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998775
No 12
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.62 E-value=5.3e-16 Score=188.04 Aligned_cols=313 Identities=29% Similarity=0.432 Sum_probs=212.5
Q ss_pred ccHHHHhhhcccCCCCCceEEEE------EeecCCCeeeEEEEEEcC------eeEEEEEeeccccchHHHHHhcCCCCH
Q psy4102 599 LRDRIFNTLYKPLINAETWTILP------LLLRPLSTGNGIRIVFEN------LDKVLVIRRFSCPSCHILVLSSGIGPE 666 (1049)
Q Consensus 599 ~r~~~~~~y~~p~~~r~nl~v~~------il~~~~sratGV~~~~~~------~~keVilsaGai~SPqILlL~SGIGP~ 666 (1049)
.|.++..+|+.++..++|++|++ |+++ +.+++||++..++ .+|+||+++|+++||+|||+ |||||+
T Consensus 191 ~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~-SGIG~~ 268 (532)
T TIGR01810 191 RRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQL-SGIGDA 268 (532)
T ss_pred EEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHh-cCCCCH
Confidence 36777888999988889997774 8887 4689999997653 37899999999999999999 999999
Q ss_pred HHHhhCCCCccccCC-cccccccccccceeEEEEcCccccchhh---------HHHHhhccccCCCCccccccccchhhh
Q psy4102 667 EHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKER---------YQVLLCLSERTDDSTYSTYTNTLFPRY 736 (1049)
Q Consensus 667 ~~L~~~GIpvv~DLP-VG~NLqDH~~~~~~~~~~~~~~t~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1049)
++|+++||++++||| ||+|||||+.+. +++.++...+..... .+|.. ...+......+... .|
T Consensus 269 ~~L~~~gI~~~~~lp~VG~nL~DH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~---~~ 341 (532)
T TIGR01810 269 EHLRELGIEPRIHLPGVGENLQDHLEVY-VQHACKQPVSLYPSLNWLKQPFIGAQWLF---GRKGAGASNHFEGG---GF 341 (532)
T ss_pred HHHHhcCCCeEeeCCccccchhhcccce-eEEEecCCcccccccchhhhhHHHHHHHh---cCCCCcccccccee---EE
Confidence 999999999999999 999999999875 445544332211100 01100 00011000000000 01
Q ss_pred hhccCCCCCCCCCccccccccc---ccHHHHHhhhhhhhc-cccccceEEEEEecCCCCCCCCccccCCCCChhhHHHHH
Q psy4102 737 IRLQSKNPLHYPLIEPNYFQHR---RDIETLIEGIRIAFN-VSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLI 812 (1049)
Q Consensus 737 ~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~G~v~l~S~~p~~~P~i~~~~l~~~~D~~~l~ 812 (1049)
.+.. .....+.+.+.+.... .+... .....+... ....+.+||+|+|++.||.+.|.|+++|+.++.|++.++
T Consensus 342 ~~~~--~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~ 418 (532)
T TIGR01810 342 VRSN--DDVDYPNIQYHFLPVAIRYDGTKA-PKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFR 418 (532)
T ss_pred EecC--CCCCCCCeEEEEEeeeeccCCCCC-CCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHH
Confidence 1100 0011122211110000 00000 000000011 122356899999999999999999999999999999999
Q ss_pred HHHHHHHHhhcChhhhhccCCCCCCCCCCCcccccccHHHHHhhhcccceeEeeccCCCCCCCCCCCCCccccccccccc
Q psy4102 813 EGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGV 892 (1049)
Q Consensus 813 ~g~~~~~~i~~~~~~~~~~~~~~~~~~pg~~~~~~~s~~~~~~~~~~~s~~~~H~~st~~m~p~~d~~~vvD~~~~v~gv 892 (1049)
++++..+++.++.++..+.... ..|+.. ..+++.++++++....+.+|+
T Consensus 419 ~~~~~~~~i~~~~~~~~~~~~~---~~p~~~---~~~d~~~~~~ir~~~~~~~H~------------------------- 467 (532)
T TIGR01810 419 EAIRVTREILKQKALDPYRGGE---ISPGPE---VQTDEEIDEFVRRHGETALHP------------------------- 467 (532)
T ss_pred HHHHHHHHHHcCcchhhccccc---cCCCCC---CCCHHHHHHHHhhhccccccc-------------------------
Confidence 9999999998877665532211 122211 245666666665544333333
Q ss_pred cceEeeccccCCccccCCCCCCccccccccccchhcccccCccCCCCCCcccccCCCceeeccCCceEeeccccCCCCCC
Q psy4102 893 DGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRYTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSG 972 (1049)
Q Consensus 893 ~~lRvvdas~~p~~~~~~~~~~~~~i~e~~~d~i~~~~~~tcrMGp~~d~~~VVD~~LRV~Gv~nLRVvDASImP~~~sg 972 (1049)
++|||||+.+|+++|||++||||||+|||||||||||++|++
T Consensus 468 --------------------------------------~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~ 509 (532)
T TIGR01810 468 --------------------------------------CGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNG 509 (532)
T ss_pred --------------------------------------ccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCC
Confidence 567788876678899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhHhh
Q psy4102 973 NPNAPTIMIGEKGADMKQSY 992 (1049)
Q Consensus 973 Nt~atv~mIaEraAd~I~~~ 992 (1049)
|||+|+||||||+||+|+++
T Consensus 510 n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 510 NLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred ccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999864
No 13
>PRK02106 choline dehydrogenase; Validated
Probab=99.61 E-value=8.9e-16 Score=187.15 Aligned_cols=315 Identities=30% Similarity=0.438 Sum_probs=209.5
Q ss_pred ccHHHHhhhcccCCCCCceEEE------EEeecCCCeeeEEEEEEcC------eeEEEEEeeccccchHHHHHhcCCCCH
Q psy4102 599 LRDRIFNTLYKPLINAETWTIL------PLLLRPLSTGNGIRIVFEN------LDKVLVIRRFSCPSCHILVLSSGIGPE 666 (1049)
Q Consensus 599 ~r~~~~~~y~~p~~~r~nl~v~------~il~~~~sratGV~~~~~~------~~keVilsaGai~SPqILlL~SGIGP~ 666 (1049)
.|.++..+|+.++..++|++|+ +|+++ +.+++||+|...+ .+|+||+++|+|+||+|||+ |||||+
T Consensus 198 ~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~-SGIG~~ 275 (560)
T PRK02106 198 RRWSAARAYLDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQL-SGIGPA 275 (560)
T ss_pred EEEChHHHhhccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhh-cCCCCh
Confidence 4677888999998778888776 48888 4689999998764 38899999999999999999 999999
Q ss_pred HHHhhCCCCccccCC-cccccccccccceeEEEEcCccccchh--hH---HHHhhccc-cCCCCccccccccchhhhhhc
Q psy4102 667 EHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKE--RY---QVLLCLSE-RTDDSTYSTYTNTLFPRYIRL 739 (1049)
Q Consensus 667 ~~L~~~GIpvv~DLP-VG~NLqDH~~~~~~~~~~~~~~t~~~~--~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 739 (1049)
++|+++||++++||| ||+|||||+.+. +.+.++.+.+.... .. .....+.. ..+......... ..|.+.
T Consensus 276 ~~L~~~gI~~~~dlP~VG~NL~dH~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~ 351 (560)
T PRK02106 276 EHLKELGIPVVHDLPGVGENLQDHLEVY-IQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNHFEA---GGFIRS 351 (560)
T ss_pred HHHHhcCCceEeeCCCCCcChhhCccce-EEEEeCCCcccccccchhhhhHHHHHHHhcCCCCccccccce---eeEEec
Confidence 999999999999999 999999999985 55555543221110 00 00000000 000000000000 001110
Q ss_pred cCCCCCCCCCcccccccc---cccHHHHHhhhhhhhc-cccccceEEEEEecCCCCCCCCccccCCCCChhhHHHHHHHH
Q psy4102 740 QSKNPLHYPLIEPNYFQH---RRDIETLIEGIRIAFN-VSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGI 815 (1049)
Q Consensus 740 ~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~G~v~l~S~~p~~~P~i~~~~l~~~~D~~~l~~g~ 815 (1049)
......+.+.+.+... ..+... .....+... ....+.++|+|+|.|.||.+.|.|+++|+.++.|++.+.+++
T Consensus 352 --~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~ 428 (560)
T PRK02106 352 --RAGVDWPNIQYHFLPVAIRYDGSNA-VKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAI 428 (560)
T ss_pred --CCCCCCCCeEEEEeeccccccCCCC-CCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHH
Confidence 0011112211111100 000000 000000111 123467899999999999999999999999999999999999
Q ss_pred HHHHHhhcChhhhhccCCCCCCCCCCCcccccccHHHHHhhhcccceeEeeccCCCCCCCCCCCCCccccccccccccce
Q psy4102 816 RIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGL 895 (1049)
Q Consensus 816 ~~~~~i~~~~~~~~~~~~~~~~~~pg~~~~~~~s~~~~~~~~~~~s~~~~H~~st~~m~p~~d~~~vvD~~~~v~gv~~l 895 (1049)
++.+++.++.++..+.... ..|+.. ..+++.++++++....+.+
T Consensus 429 ~~~~~i~~~~~~~~~~~~~---~~p~~~---~~~~~~~~~~i~~~~~~~~------------------------------ 472 (560)
T PRK02106 429 RLTREIMAQPALDPYRGRE---ISPGAD---VQTDEEIDAFVREHAETAY------------------------------ 472 (560)
T ss_pred HHHHHHHcChhhhhccccc---cCCCcc---cCCHHHHHHHHHhccCcCc------------------------------
Confidence 9999998877665432211 122211 2344445554433322222
Q ss_pred EeeccccCCccccCCCCCCccccccccccchhcccccCccCCCCCCcccccCCCceeeccCCceEeeccccCCCCCCCch
Q psy4102 896 RVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRYTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPN 975 (1049)
Q Consensus 896 Rvvdas~~p~~~~~~~~~~~~~i~e~~~d~i~~~~~~tcrMGp~~d~~~VVD~~LRV~Gv~nLRVvDASImP~~~sgNt~ 975 (1049)
|+++|||||+ |+++|||++||||||+|||||||||||++|++||+
T Consensus 473 ---------------------------------H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~ 517 (560)
T PRK02106 473 ---------------------------------HPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLN 517 (560)
T ss_pred ---------------------------------ccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchH
Confidence 3467889996 55899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHhhh
Q psy4102 976 APTIMIGEKGADMKQSYL 993 (1049)
Q Consensus 976 atv~mIaEraAd~I~~~~ 993 (1049)
+|+||||||+||+|++++
T Consensus 518 ~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 518 APTIMIAEKAADLIRGRT 535 (560)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999999876
No 14
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.51 E-value=1.8e-13 Score=166.61 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=53.9
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcch-HHHHH
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS-PQLLM 360 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~T-p~LLl 360 (1049)
..|...+++.|++|+++|+|++|+.+ ++++|+||.+..+++.++|+|+|.||||||+|+. +.++.
T Consensus 217 ~~l~~~~~~~gv~i~~~~~~~~Li~d---~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 217 ARLRLALKDAGVPLWLDSPMTELITD---PDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHHHhCCceEEeCCEEEEEEEC---CCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 34555677889999999999999997 3579999999878888889998889999999985 44443
No 15
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.49 E-value=2.4e-13 Score=164.54 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=51.7
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
.|...+++.|++|+++++|++|+.+ +++|+||.+..+|++..|+|+|.||||+|+|+...-|+
T Consensus 222 ~L~~~~~~~Gv~i~~~t~v~~Li~~----~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~ 284 (564)
T PRK12845 222 GLFAGVLRAGIPIWTETSLVRLTDD----GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMR 284 (564)
T ss_pred HHHHHHHHCCCEEEecCEeeEEEec----CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHH
Confidence 3445566789999999999999975 47999998877777788999889999999999655443
No 16
>PRK07121 hypothetical protein; Validated
Probab=99.47 E-value=7.7e-13 Score=159.06 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=53.1
Q ss_pred HHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHh
Q psy4102 292 KAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMV 361 (1049)
Q Consensus 292 ~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~ 361 (1049)
...|...+++.|++|+++++|++|+.+ ++++++||++..+++...++|+|.||||+|+|...+-|+.
T Consensus 180 ~~~L~~~~~~~gv~i~~~~~v~~l~~~---~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 180 MDPLAKRAAALGVQIRYDTRATRLIVD---DDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEC---CCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 334555667789999999999999987 3479999999777777789995689999999986544443
No 17
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.47 E-value=6.7e-13 Score=159.66 Aligned_cols=62 Identities=10% Similarity=0.185 Sum_probs=47.9
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
.|...+++.|++|+++++|++|+.+ +++++||.+.. +++..+++|+ .||||+|+|..+.-|+
T Consensus 195 ~L~~~~~~~gv~i~~~t~v~~l~~~----~g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 195 GLLKNVQERKIPLFVNADVTKITEK----DGKVTGVKVKINGKETKTISSK-AVVVTTGGFGANKDMI 257 (506)
T ss_pred HHHHHHHHcCCeEEeCCeeEEEEec----CCEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCHHHH
Confidence 3445566789999999999999865 57899998865 4456679995 7999999998544333
No 18
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.44 E-value=8.2e-13 Score=160.35 Aligned_cols=64 Identities=20% Similarity=0.385 Sum_probs=53.2
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
..|...+++.|++|+++++|++|+.+ +++|+||++..+|+.++|+|+|.||||||+|....=|+
T Consensus 212 ~~l~~~~~~~gv~i~~~~~v~~Li~~----~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 212 GRMLEAALAAGVPLWTNTPLTELIVE----DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEe----CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 34445567789999999999999987 57999999987888888999878999999998654444
No 19
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.43 E-value=1.5e-12 Score=156.89 Aligned_cols=63 Identities=21% Similarity=0.397 Sum_probs=51.0
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
++..+.++.|++|+++++|++|+.+ +++|+||++..+++..+|+|+|.||||||+|+..+-|+
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~----~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~ 241 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVE----DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMR 241 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEec----CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHH
Confidence 3434445579999999999999987 57999999877788889999889999999997544433
No 20
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.41 E-value=6.5e-13 Score=156.69 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=48.3
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEE--eCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL--RDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~--~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
..|...+++.+++|+++++|++|+.+ +++|+||++. .+|+..+|+|+ .||||+|+|.. .++.
T Consensus 145 ~~l~~~~~~~gv~i~~~~~~~~Li~e----~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 145 EALAKAAEEAGVDIRFNTRVTDLITE----DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHHHHHHHTTEEEEESEEEEEEEEE----TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHHH
T ss_pred HHHHHHHhhcCeeeeccceeeeEEEe----CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-cccc
Confidence 33445567778999999999999998 5799999998 58888999997 89999999998 4443
No 21
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.39 E-value=4.4e-13 Score=161.54 Aligned_cols=308 Identities=24% Similarity=0.281 Sum_probs=194.0
Q ss_pred CccHHHHhhhcccCCCCCceEEEE------EeecCCCeeeEEEEEEcC--------eeEEEEEeeccccchHHHHHhcCC
Q psy4102 598 GLRDRIFNTLYKPLINAETWTILP------LLLRPLSTGNGIRIVFEN--------LDKVLVIRRFSCPSCHILVLSSGI 663 (1049)
Q Consensus 598 ~~r~~~~~~y~~p~~~r~nl~v~~------il~~~~sratGV~~~~~~--------~~keVilsaGai~SPqILlL~SGI 663 (1049)
+.|.++..+|+.|+..++|++|++ |+++. .+++||++..++ ..++||+++|+|+||+|||+ |||
T Consensus 199 g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~-~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~-Sgi 276 (542)
T COG2303 199 GRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG-DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLL-SGI 276 (542)
T ss_pred CeEeechhhcchhHhcCCceEEecCCEEEEEEEEC-CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHh-cCC
Confidence 346778889999999999998875 78875 689999998754 25689999999999999999 999
Q ss_pred CCHHHHhhCCCCccccCC-cccccccccccceeEEEEcCccccchhhHHHHhhccccCCCCccccccccchhhhhhccCC
Q psy4102 664 GPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSK 742 (1049)
Q Consensus 664 GP~~~L~~~GIpvv~DLP-VG~NLqDH~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (1049)
||+++|.++||+++.++| ||+|||||..+...+.. .... ... + .
T Consensus 277 g~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~-~~~~-~~~-----------------~----------------~ 321 (542)
T COG2303 277 GPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEA-TEPT-NDS-----------------V----------------L 321 (542)
T ss_pred CchhhhhhcCCeeeecCcchhHHHHhhhhhhhheec-cCcc-ccc-----------------c----------------c
Confidence 999999999999999999 99999999986532221 1110 000 0 0
Q ss_pred CCCCCCCcc-cccccccccHHHHHhhhhhhhccccccceEEEEEecCCCCCCCCccccCCCCChhhHHHHHHHHHHHHHh
Q psy4102 743 NPLHYPLIE-PNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNV 821 (1049)
Q Consensus 743 ~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~l~S~~p~~~P~i~~~~l~~~~D~~~l~~g~~~~~~i 821 (1049)
.......+. ..|...+.+... + ..+.+. ++.+......|+++..+...+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~G~~~--------~-----~~~~~g-f~~~~~~~~~p~~~~~~~~~~~--------------- 372 (542)
T COG2303 322 SLFSKLGIGADRYLLTRDGPGA--------T-----NHFEGG-FVRSGPAGEYPDGQYHFAPLPL--------------- 372 (542)
T ss_pred cccccccccceeEEeecCCCcc--------c-----cccccc-ccccCccccCCCcccccccccc---------------
Confidence 000000000 011111111100 0 000111 2344444445555333321100
Q ss_pred hcChhhhhccCCCCCCCCCCCcccccccHHHHHhhhcccceeEeeccCC-CCCCCCCCCCCccccccccccccceEeec-
Q psy4102 822 SASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTST-CKMGPPTDPEAVVDPRLRVYGVDGLRVID- 899 (1049)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~pg~~~~~~~s~~~~~~~~~~~s~~~~H~~st-~~m~p~~d~~~vvD~~~~v~gv~~lRvvd- 899 (1049)
... . .....++.. ..+..++.+++.++..+. ....|.++++|..++.++...+..+|...
T Consensus 373 ------~~~--~--~~~~~~~~~--------~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~ 434 (542)
T COG2303 373 ------AIR--A--AGAEHGFTL--------HVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTRE 434 (542)
T ss_pred ------ccc--c--cccCCccEE--------eeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHH
Confidence 000 0 001111111 135778899999998887 56678899999998886555444444332
Q ss_pred --c-ccCCccc-cCCCCCCccccccccccchhc------ccccCccCCCCCCcccccC-CCceeeccCCceEeeccccCC
Q psy4102 900 --A-SIMPIIV-SGNPNAPTIMIGEKGADMTSR------YTIRPALMGPATDLEAVVD-PRLRVYGVDGLRVIDASIMPI 968 (1049)
Q Consensus 900 --a-s~~p~~~-~~~~~~~~~~i~e~~~d~i~~------~~~~tcrMGp~~d~~~VVD-~~LRV~Gv~nLRVvDASImP~ 968 (1049)
. ..+.... ......+.+..++.+.+.+.. |.++||||| +|+.+||| ++|||||++|||||||||||+
T Consensus 435 i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG--~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt 512 (542)
T COG2303 435 IIGQPALDARRKAELAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMG--SDPAAVVDDPYLRVHGLENLRVVDASVMPT 512 (542)
T ss_pred HhcCccchhhHHHhhcCCCccccHHHHHHHHHhccCccccccccccCC--CCchhhccccccccccCCCeEEeCcccCcC
Confidence 1 2222211 111222333333322222222 345899999 56666666 999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHhHh
Q psy4102 969 IVSGNPNAPTIMIGEKGADMKQS 991 (1049)
Q Consensus 969 ~~sgNt~atv~mIaEraAd~I~~ 991 (1049)
++++|||+|++|||||+||+|++
T Consensus 513 ~~~~Np~~ti~ala~raA~~I~~ 535 (542)
T COG2303 513 STGVNPNLTIIALAERAADHILG 535 (542)
T ss_pred ccCCCccHhHHHHHHHHHHHHhh
Confidence 99999999999999999999988
No 22
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.37 E-value=3.3e-12 Score=152.82 Aligned_cols=68 Identities=24% Similarity=0.248 Sum_probs=54.0
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEE-eCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~-~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
..|...+++.|++|+++++|++|+.+ +++++||.+. .+++...++|+ .||||+|+|.+++.|+..-.+
T Consensus 135 ~~l~~~~~~~gv~i~~~t~v~~l~~~----~g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 135 NALYRSAERLGVEIRYDAPVTALELD----DGRFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWG 203 (466)
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEec----CCeEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcC
Confidence 34445567789999999999999986 4789999885 45666678995 699999999988877766443
No 23
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=1.4e-11 Score=150.00 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=45.3
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcc
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~ 354 (1049)
|...+.+.|++|++++.+++|+.+ +++|+||.+.. +++...++|+ .||||+|+|+
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~----~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTD----NKKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEE----CCEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 444455679999999999999987 57999998875 4566788994 7999999997
No 24
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.33 E-value=1.1e-11 Score=151.76 Aligned_cols=58 Identities=28% Similarity=0.348 Sum_probs=46.9
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.|...+.+.|++|+.++.+++|+.+ ++++|+||.+.. +|+...|.|+ .||||+|+|+.
T Consensus 192 ~L~~~a~~~gv~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 251 (635)
T PLN00128 192 TLYGQAMKHNTQFFVEYFALDLIMD---SDGACQGVIALNMEDGTLHRFRAH-STILATGGYGR 251 (635)
T ss_pred HHHHHHHhCCCEEEEeeEEEEEEEc---CCCEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCcc
Confidence 3444455679999999999999986 357999998864 6777889995 79999999985
No 25
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.33 E-value=2.9e-11 Score=142.54 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=43.3
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcch
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+.++.|++|++++.|++|+.+ +++++||.+..+++..+++|+ .||||+|++..
T Consensus 138 ~~~~~gV~i~~~t~v~~Li~~----~~~v~Gv~~~~~g~~~~i~Ak-~VILAtGG~~~ 190 (433)
T PRK06175 138 VKKRKNITIIENCYLVDIIEN----DNTCIGAICLKDNKQINIYSK-VTILATGGIGG 190 (433)
T ss_pred HHhcCCCEEEECcEeeeeEec----CCEEEEEEEEECCcEEEEEcC-eEEEccCcccc
Confidence 334679999999999999876 478999887666666689995 69999999764
No 26
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=3e-11 Score=147.48 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=47.5
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
..|...+.+.|++|++++.|++|+.+ ++++|+||.+.. +|+...++|+ .||||||++..
T Consensus 147 ~~L~~~~~~~gi~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 147 HTLYQQNLKNHTTIFSEWYALDLVKN---QDGAVVGCTAICIETGEVVYFKAR-ATVLATGGAGR 207 (588)
T ss_pred HHHHHHhhhcCCEEEeCcEEEEEEEC---CCCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence 33444456789999999999999986 357999998853 6777789995 79999999975
No 27
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.32 E-value=2.3e-11 Score=147.41 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=45.1
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEE-----eCCeEEEEEcCeEEEEcCCCcch
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-----RDGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~-----~~g~~~~v~A~k~VILAAGa~~T 355 (1049)
..|...+++.+++|+.++.|++|+.+ ++++|+||.+. .++....++|+ .||||+|++..
T Consensus 148 ~~L~~~~~~~gV~i~~~~~v~~Li~~---~~g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~~ 211 (541)
T PRK07804 148 RALDAAVRADPLDIREHALALDLLTD---GTGAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLGQ 211 (541)
T ss_pred HHHHHHHHhCCCEEEECeEeeeeEEc---CCCeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCCC
Confidence 34545566778999999999999987 24699999876 23334578895 79999999863
No 28
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.31 E-value=1.8e-11 Score=149.51 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=52.0
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
..|...+++.|++|++++.|++|+.+ +++|+||.+..+++..+++|++.||||+|+|...+=|+
T Consensus 225 ~aL~~~~~~~Gv~i~~~t~v~~Li~~----~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 225 GRLLYSLRARGVRILTQTDVESLETD----HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEee----CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 33545667789999999999999986 47999999877777778998778999999998654444
No 29
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.30 E-value=2.4e-11 Score=148.67 Aligned_cols=58 Identities=26% Similarity=0.329 Sum_probs=47.2
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.|...+++.|++|++++.|++|+.+ ++++|+||.+.. +|+.+.|.|+ .||||+|+++.
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMD---DGGVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEc---CCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 3444556789999999999999987 247999998753 6777789995 79999999985
No 30
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.29 E-value=2.4e-11 Score=148.91 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=47.5
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
..|...+++.|++|++++.|++|+.+ ++++|+||.+.. +|+...++|+ .||||+|+++.
T Consensus 170 ~~L~~~a~~~gv~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 170 HTLYGQSLKYDCNFFIEYFALDLIMD---EDGECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHhCCCEEEeceEEEEEEEC---CCCEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 34445566789999999999999984 257999998753 6777788995 79999999975
No 31
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.29 E-value=3.4e-11 Score=146.45 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=53.8
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhC
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVS 362 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~S 362 (1049)
.|...+++.|++|+++++|++|+.+ +++|+||.+..+++..+|+|++.||||||+|.+.+-|+..
T Consensus 213 ~L~~~~~~~gv~v~~~t~v~~l~~~----~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 213 GLRIGLQRAGVPVLLNTPLTDLYVE----DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHHHcCCCEEEeCCEEEEEEEe----CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 3445567789999999999999987 4799999987777788899987899999999986666543
No 32
>PLN02815 L-aspartate oxidase
Probab=99.29 E-value=3.1e-11 Score=146.74 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=42.3
Q ss_pred hcCCcEEecCceEEEEEeccCCCCC--eEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 300 LRKNLHIAMETQALRLLFDKSGPVP--KAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~~~~~--rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+++|++|+.++.+++|+.++ +++ +|+||.+.. +|+...+.|+ .||||||+++.
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~--~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQ--DGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeec--CCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence 45699999999999999862 123 499998853 6777788894 79999999974
No 33
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=3e-11 Score=148.60 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=45.5
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
..+++.|++|++++.|++|+.+ +++|+||.+.. +|+...+.|+ .||||||+|+.
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~d----~g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVVV----DGRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEEe----CCEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 3456789999999999999987 47999999875 5666778996 79999999986
No 34
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.28 E-value=2.5e-11 Score=146.91 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=43.9
Q ss_pred hcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcch
Q psy4102 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~T 355 (1049)
++.|++|++++.|++|+.++ ++++|+||.+..+|+...++|+ .||||+|+++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~--~~g~v~Gv~~~~~g~~~~i~Ak-aVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEP--ETGRCQGISLLYQGQITWLRAG-AVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecC--CCCEEEEEEEEECCeEEEEEcC-EEEEcCCCCcc
Confidence 45699999999999999872 1379999988777777778895 79999999864
No 35
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.28 E-value=5.6e-11 Score=144.67 Aligned_cols=36 Identities=36% Similarity=0.556 Sum_probs=33.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..++||||||+|.||+++|.+++++ |.+|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 3579999999999999999999998 99999999997
No 36
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.27 E-value=5.2e-11 Score=141.42 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=48.9
Q ss_pred hHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 291 SKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 291 ~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-~g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
....|...+++.|++|+++++|++|+.+ ++++++||++.. +++...+.+ |.||||+|++....-|
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~---~~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n~~m 197 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQD---DQGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSNKEM 197 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEEC---CCCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCCHHH
Confidence 3344556667889999999999999986 357899999875 444455677 4799999999864333
No 37
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=3.8e-11 Score=145.87 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=46.4
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.|...+++.|++|+++|.|++|+.+ ++++++||.+.. +|+.+.++|+ .||||+|++..
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~---~~~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 198 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVD---ENREVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ 198 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEe---CCcEEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence 3445556789999999999999987 345799998764 6666789995 79999999974
No 38
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=1e-10 Score=143.04 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=46.2
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
..|...+++.|++|++++.|++|+.+ +++++||.... +++...++|+ .||||+|++..
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~~----~g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~ 198 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLILE----DNQAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR 198 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEEE----CCEEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence 34445556789999999999999987 47999998643 6666678995 79999999874
No 39
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.25 E-value=7.5e-11 Score=154.17 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCcEEecCceEEEEEeccCC--CC---CeEEEEEEEe----CCeEEEEEcCeEEEEcCCCcchHH
Q psy4102 302 KNLHIAMETQALRLLFDKSG--PV---PKAVGIEILR----DGRKHIIRAKKEIISSAGAINSPQ 357 (1049)
Q Consensus 302 ~nl~I~~~t~V~~Il~d~~~--~~---~rv~GV~~~~----~g~~~~v~A~k~VILAAGa~~Tp~ 357 (1049)
.|++|+++++|++|+.++++ ++ ++|+||.+.. +|+.+.|+| |.||||+|+|+...
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccCc
Confidence 59999999999999987311 11 3899999875 577778999 57999999999754
No 40
>PRK12839 hypothetical protein; Provisional
Probab=99.24 E-value=7e-11 Score=143.66 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=48.9
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
.|...+++.|++|+++|.|++|+.+ ++++|+||.+...+...++.++|.||||||+|....-|
T Consensus 219 ~L~~~a~~~Gv~i~~~t~v~~Li~~---~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~ 281 (572)
T PRK12839 219 RLLRSADDLGVDLRVSTSATSLTTD---KNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDR 281 (572)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEEC---CCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHH
Confidence 3445567789999999999999986 35799999987644455677767899999999874444
No 41
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.23 E-value=9.7e-11 Score=144.37 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=46.8
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
|...+.+.|++|+.++.|++|+.+ +++++||.+.+ +|+...+.|+ .||||||+++.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~----~g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHD----GKRCYGAVVRCLITGELRAYVAK-ATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEE----CCEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence 445556789999999999999987 57999998874 6777788995 79999999874
No 42
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.23 E-value=7.9e-11 Score=144.01 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=50.2
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHh
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMV 361 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~ 361 (1049)
|...+++.|++|++++.|++|+.+ +++|+||.+...+....++++|.||||+|++....-++.
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~----~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTE----GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee----CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHHH
Confidence 444566789999999999999987 579999998764555678887789999999986555543
No 43
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=1.1e-10 Score=142.91 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=46.2
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.|...+.+.|++|+.++.|++|+.+ ++++++||.+.. +|+...++|+ .||||+|++..
T Consensus 153 ~L~~~~~~~gi~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 153 TLYQQNVAAKTQFFVEWMALDLIRD---ADGDVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HHHHHHHhcCCEEEeCcEEEEEEEc---CCCeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 3444456789999999999999986 357999998853 5666778885 79999999875
No 44
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.21 E-value=2.2e-10 Score=140.09 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=40.8
Q ss_pred CcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 303 NLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 303 nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+++|+.++.+++|+.+ ++++|+||.+.+ +++...+.|+ .||||||++..
T Consensus 151 ~i~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLD---DEGVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEEC---CCCEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 4899999999999986 357999999875 4565678885 79999999985
No 45
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.21 E-value=2.1e-10 Score=140.21 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=51.3
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
.|...+++.|++|+++++|++|+.+ +++++||.+..+++..+++|+|.||||+|++....-++
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~~----~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 284 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLRE----DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARR 284 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEe----CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHH
Confidence 3455667889999999999999987 47999999877666677999568999999998655553
No 46
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.21 E-value=1.3e-10 Score=141.57 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=43.0
Q ss_pred hcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+.+|++++.++.|++|+.+ +++|+||.+.. +|+...++|+ .||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVD----DGRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEee----CCEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 4468999999999999987 47999998754 6777788995 79999999874
No 47
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.20 E-value=1.6e-10 Score=141.14 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=42.5
Q ss_pred hcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+.+|+++++++.|++|+.+ +++++||.+.. +|+...++|+ .||||+|++..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVD----DGHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEe----CCEEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence 3468999999999999987 57999998753 6666788995 79999999874
No 48
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.17 E-value=2.9e-10 Score=139.07 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=47.4
Q ss_pred HHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 292 KAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 292 ~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
...|...+++.|++|++++.|++|+.++++++++|+||.+.. +++...++|+ .||||+|++..
T Consensus 143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 207 (583)
T PRK08205 143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence 334555566789999999999999987210027999998753 5666778995 79999999874
No 49
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.17 E-value=2.2e-10 Score=137.55 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=45.1
Q ss_pred chHHhhhc-CCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcch
Q psy4102 294 FLRPIRLR-KNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 294 ~L~~~~~~-~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.|...+++ +|++|++++.|++|+.+ +++++||.+...++...++|+ .||||+|++..
T Consensus 133 ~L~~~~~~~~gi~i~~~~~v~~l~~~----~g~v~Gv~~~~~~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 133 TLVKKALNHPNIRIIEGENALDLLIE----TGRVVGVWVWNRETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred HHHHHHHhcCCcEEEECeEeeeeecc----CCEEEEEEEEECCcEEEEEcC-EEEECCCcccC
Confidence 34444444 79999999999999876 478999988765555678895 79999999874
No 50
>PRK08275 putative oxidoreductase; Provisional
Probab=99.17 E-value=5.5e-10 Score=136.02 Aligned_cols=60 Identities=30% Similarity=0.291 Sum_probs=47.2
Q ss_pred HHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 292 KAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 292 ~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
...|...+++.|++|++++.|++|+.+ ++++++||.+.. +|+...++|+ .||||+|++..
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~ 201 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTD---ADGRVAGALGFDCRTGEFLVIRAK-AVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEc---CCCeEEEEEEEecCCCcEEEEECC-EEEECCCCccc
Confidence 344555567789999999999999986 247899998753 5666778895 69999999863
No 51
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.17 E-value=2.5e-10 Score=138.43 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=44.1
Q ss_pred hhhcCCcEEecCceEEEEEeccC--CCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKS--GPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~--~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+.+++|++|++++.|++|+.++. .++++++||.+.+ +|+...|+|+ .||||+|++..
T Consensus 148 ~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 208 (536)
T PRK09077 148 ARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGASK 208 (536)
T ss_pred HHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence 33457999999999999997620 0137999999864 5677788995 79999999874
No 52
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=2e-10 Score=141.26 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=40.0
Q ss_pred cEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 304 LHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 304 l~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
++|+.++.|++|+.+ +++++||.+.. +++...++|+ .||||+|+++.
T Consensus 166 v~i~~~~~v~~L~~~----~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKD----GGRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEE----CCEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 999999999999987 47999998753 6666788996 69999999874
No 53
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.16 E-value=4.3e-10 Score=137.72 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=45.8
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.|...+.+.|++|+.++.|++|+.+ +++++||.+.. +|+...++|+ .||||+|++..
T Consensus 134 ~L~~~~~~~gv~i~~~~~v~~L~~~----~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~ 192 (566)
T TIGR01812 134 TLYEQCLKLGVSFFNEYFALDLIHD----DGRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHcCCEEEeccEEEEEEEe----CCEEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence 3445555669999999999999987 47999998754 5666778995 79999999864
No 54
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=4.8e-10 Score=137.22 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=42.2
Q ss_pred hcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+..|++|+.++.|++|+.+ +++++||.+.. +++...++|+ .||||+|++..
T Consensus 149 ~~~gv~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~ 201 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVE----NGVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAGR 201 (577)
T ss_pred hcCCCEEEECCEEEEEEEE----CCEEEEEEEEEcCCCeEEEEECC-cEEEcCchhcc
Confidence 3479999999999999987 47999998754 5666678995 69999999863
No 55
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.14 E-value=3.8e-10 Score=136.00 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=44.3
Q ss_pred hHHhhh-cCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcch
Q psy4102 295 LRPIRL-RKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 295 L~~~~~-~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~T 355 (1049)
|...++ +.|++|+.++.|++|+.+ +++++||.+..+++...++|+ .||||+|++..
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVD----DGAVAGVLAATAGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeec----CCEEEEEEEEeCCeEEEEECC-EEEEcCCCCcC
Confidence 333343 469999999999999876 479999998766655678996 69999999864
No 56
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.14 E-value=5e-10 Score=135.94 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=49.3
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
..+.+.|++|+++++|++|..+ +++++||++.+ +++..+|+|+ .||+|||++ +.+|+...|+
T Consensus 157 ~~A~~~Ga~i~~~t~V~~i~~~----~~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 157 LDAKEHGAQILTYHEVTGLIRE----GDTVCGVRVRDHLTGETQEIHAP-VVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HHHHhCCCEEEeccEEEEEEEc----CCeEEEEEEEEcCCCcEEEEECC-EEEECCChh-HHHHHHhcCC
Confidence 3456779999999999999887 47899998864 4555689997 599999975 7888776654
No 57
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.14 E-value=3.7e-10 Score=135.98 Aligned_cols=49 Identities=10% Similarity=0.289 Sum_probs=41.7
Q ss_pred CCcEEecCceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEcCeEEEEcCCCcch
Q psy4102 302 KNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 302 ~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.|++|++++.|++|+.+ +++++||.+.. +++...++|+ .||||+|++..
T Consensus 142 ~gV~i~~~~~v~~Li~~----~g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE----NGRCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec----CCEEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence 69999999999999876 47999998865 5666678895 79999999875
No 58
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.13 E-value=3.4e-10 Score=138.55 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=42.7
Q ss_pred cCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 301 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 301 ~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+.|++|++++.|++|+.+ ++++|+||.+.. +|+...++|+ .||||||+|+.
T Consensus 145 ~~gV~i~~~t~v~~Li~d---d~grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVV---DGNRARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEc---CCCEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 458999999999999986 356999999875 5666778995 79999999874
No 59
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.13 E-value=9.6e-10 Score=134.87 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=42.7
Q ss_pred hHHhhhc-CCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcc
Q psy4102 295 LRPIRLR-KNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 295 L~~~~~~-~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~ 354 (1049)
|...+++ .|++|+.++.|++|+.+ +++++||.+.. +++...++|+ .||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~----~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVD----DNRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEe----CCEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 4344444 46999999999999987 46999997643 5666678995 7999999986
No 60
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.10 E-value=1.8e-10 Score=132.37 Aligned_cols=64 Identities=31% Similarity=0.384 Sum_probs=47.5
Q ss_pred hHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 291 SKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 291 ~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
....|...+++.|++|+++++|++|..+ +++++||+.. +| +++|+ .||+|+|+ .+++|+..+|+
T Consensus 149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~~----~~~v~gv~~~-~g---~i~ad-~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 149 LIQALAAEAQRAGVEIRTGTEVTSIDVD----GGRVTGVRTS-DG---EIRAD-RVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHTT-EEEESEEEEEEEEE----TTEEEEEEET-TE---EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred hhhhhHHHHHHhhhhccccccccchhhc----cccccccccc-cc---ccccc-eeEecccc-cceeeeecccc
Confidence 3344555667779999999999999998 5789999862 33 38896 59999996 68889988875
No 61
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.03 E-value=4.9e-09 Score=134.39 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=41.8
Q ss_pred cCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 301 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 301 ~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
+.++++.+++.+++|+.+ +++++||.+.+ +|+.+.++|+ .||||||+++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~----~g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTE----GGRAVGAAALNTRTGEFVTVGAK-AVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEee----CCEEEEEEEEecCCCcEEEEECC-EEEECCCcccc
Confidence 348999999999999986 57999998754 6777889995 79999999863
No 62
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.01 E-value=8.1e-09 Score=125.76 Aligned_cols=55 Identities=22% Similarity=0.248 Sum_probs=42.7
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcc
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~ 354 (1049)
...+.+++|+.++.|++|+.+++ ++++|+||.+.. +|+...+.|+ .||||+|++.
T Consensus 135 ~l~~~~~~i~~~~~v~~Ll~d~~-~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 191 (614)
T TIGR02061 135 AAKNALGDIFERIFIVKLLLDKN-TPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV 191 (614)
T ss_pred HHHhCCCeEEcccEEEEEEecCC-CCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence 34455689999999999998621 026999998753 6777788995 7999999985
No 63
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.99 E-value=7.5e-10 Score=128.43 Aligned_cols=113 Identities=18% Similarity=0.195 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccccccccccCCCCccchhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEE
Q psy4102 251 AAFVKAGEELGYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIE 330 (1049)
Q Consensus 251 ~~~~~a~~~~G~~~~d~~~~~~~G~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~ 330 (1049)
+.+.+.++++|++...... |..+ +.+ .+..+....|...+++.|++|+++++|++|..+ ++.+.+|+
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~----gr~f-P~s----~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~----~~~~f~v~ 146 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEED----GRVF-PKS----DKASSVVDALLEELKRLGVEIHFNTRVKSIEKK----EDGVFGVK 146 (409)
T ss_dssp HHHHHHHHHTT--EEE-ST----TEEE-ETT------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE----TTEEEEEE
T ss_pred HHHHHHHHhcCCeEEEcCC----CEEC-CCC----CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec----CCceeEee
Confidence 4566677788887632111 1111 111 123344455656677889999999999999987 45677787
Q ss_pred EEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCCCccccccCCCCccccCc
Q psy4102 331 ILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLS 382 (1049)
Q Consensus 331 ~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~~~gI~v~~dlp 382 (1049)
. .+++ .+.|++ ||||+|+...|++ =-+|-| -..++++|+.++.-.|
T Consensus 147 ~-~~~~--~~~a~~-vILAtGG~S~p~~-GS~G~g-y~~a~~lGh~i~~~~P 192 (409)
T PF03486_consen 147 T-KNGG--EYEADA-VILATGGKSYPKT-GSDGSG-YRIAKKLGHTITPPYP 192 (409)
T ss_dssp E-TTTE--EEEESE-EEE----SSSGGG-T-SSHH-HHHHHHTT--EEEEEE
T ss_pred c-cCcc--cccCCE-EEEecCCCCcccc-CCCcHH-HHHHHHCCCcEecCCC
Confidence 6 3333 688974 9999999888873 122222 1445667766654444
No 64
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.98 E-value=2.2e-09 Score=119.23 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCcccccccccccCCCCccchhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEE
Q psy4102 250 AAAFVKAGEELGYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGI 329 (1049)
Q Consensus 250 ~~~~~~a~~~~G~~~~d~~~~~~~G~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV 329 (1049)
.+.++++++.+|+++..-.. |..+| . ..+.+.....|...+++.|++|+++++|.+|..+ + ..-.+
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~----Gr~Fp----~-sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~----~-~~f~l 146 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDL----GRMFP----D-SDKASPIVDALLKELEALGVTIRTRSRVSSVEKD----D-SGFRL 146 (408)
T ss_pred HHHHHHHHHhcCCeeEEccC----ceecC----C-ccchHHHHHHHHHHHHHcCcEEEecceEEeEEec----C-ceEEE
Confidence 35677778889987632222 21111 1 1123334444556678899999999999999887 2 22222
Q ss_pred EEEeCCeEEEEEcCeEEEEcCCCcchHHH
Q psy4102 330 EILRDGRKHIIRAKKEIISSAGAINSPQL 358 (1049)
Q Consensus 330 ~~~~~g~~~~v~A~k~VILAAGa~~Tp~L 358 (1049)
.. .+|+ +|++++ +|||+|+-.-|++
T Consensus 147 ~t-~~g~--~i~~d~-lilAtGG~S~P~l 171 (408)
T COG2081 147 DT-SSGE--TVKCDS-LILATGGKSWPKL 171 (408)
T ss_pred Ec-CCCC--EEEccE-EEEecCCcCCCCC
Confidence 22 3554 689985 9999999877764
No 65
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.95 E-value=1.2e-08 Score=121.70 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=41.3
Q ss_pred hHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcch
Q psy4102 291 SKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 291 ~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~T 355 (1049)
....|...+++.|++++.+ .|++|+.+ +++++||.. +++ .++|+ .||||+|++..
T Consensus 122 i~~~L~~~~~~~gv~i~~~-~v~~l~~~----~g~v~Gv~~--~g~--~i~a~-~VVLATGG~~~ 176 (466)
T PRK08401 122 IIKILYKHARELGVNFIRG-FAEELAIK----NGKAYGVFL--DGE--LLKFD-ATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHhcCCEEEEe-EeEEEEee----CCEEEEEEE--CCE--EEEeC-eEEECCCcCcC
Confidence 3344555667789999876 89998876 478999976 444 57886 69999999875
No 66
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.92 E-value=6e-09 Score=125.13 Aligned_cols=97 Identities=24% Similarity=0.188 Sum_probs=59.3
Q ss_pred HHHHHHhcCCCC-CCCCC----CCcccccccccccCCCCc-cchhHHchHHhhh-cCCcEEecCceEEEEEeccCCCCCe
Q psy4102 253 FVKAGEELGYEN-RDING----ERQTGFMIAQGTIRRGSR-CSTSKAFLRPIRL-RKNLHIAMETQALRLLFDKSGPVPK 325 (1049)
Q Consensus 253 ~~~a~~~~G~~~-~d~~~----~~~~G~~~~~~~~~~g~r-~s~~~~~L~~~~~-~~nl~I~~~t~V~~Il~d~~~~~~r 325 (1049)
.+..+++.|.++ +...+ ....|... ..++..+.+ .......|..... ..+++|+.+..+++|+.+ +++.
T Consensus 97 ~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~-~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 172 (562)
T COG1053 97 AVDELEKWGVPFSRTEDGRIYQRRFGGHSK-PRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVD---DGGG 172 (562)
T ss_pred HHHHHHHhCCCcccCCCccccccccCCcCC-CcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheec---CCCc
Confidence 345567788887 22222 11222221 123333322 1222223333333 477899999999999988 2445
Q ss_pred EEEEEEEe--CCeEEEEEcCeEEEEcCCCcc
Q psy4102 326 AVGIEILR--DGRKHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 326 v~GV~~~~--~g~~~~v~A~k~VILAAGa~~ 354 (1049)
+.||.... +|+...++| |.||+|+|+.+
T Consensus 173 v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 173 VAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred EEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 89998764 677778888 57999999998
No 67
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.91 E-value=1e-08 Score=117.77 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=73.4
Q ss_pred CcccccCCCCCcHHHHHHHHHHHhcCCC-CCCCCCC-----------Cccccccccc-ccCCCCccchhHHchHHhhhcC
Q psy4102 236 GYLTVQESPWHSPLAAAFVKAGEELGYE-NRDINGE-----------RQTGFMIAQG-TIRRGSRCSTSKAFLRPIRLRK 302 (1049)
Q Consensus 236 G~l~v~~~~~~~~~~~~~~~a~~~~G~~-~~d~~~~-----------~~~G~~~~~~-~~~~g~r~s~~~~~L~~~~~~~ 302 (1049)
|.+.+.......+..+.+.+.+.+.|+. ....+.. ...+..+.+. ++.+. ......|...+...
T Consensus 90 g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~---~~~t~~l~e~a~~~ 166 (429)
T COG0579 90 GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDP---GELTRALAEEAQAN 166 (429)
T ss_pred CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcH---HHHHHHHHHHHHHc
Confidence 6677777777777778888888888876 2111100 0111111111 11111 11222344555666
Q ss_pred CcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCCC
Q psy4102 303 NLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGP 366 (1049)
Q Consensus 303 nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp 366 (1049)
|++|.+|++|++|..+. +| ++-+.. .+|++. ++|+ .||.|||. .+..|+.++|+.+
T Consensus 167 g~~i~ln~eV~~i~~~~---dg-~~~~~~-~~g~~~-~~ak-~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 167 GVELRLNTEVTGIEKQS---DG-VFVLNT-SNGEET-LEAK-FVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred CCEEEecCeeeEEEEeC---Cc-eEEEEe-cCCcEE-EEee-EEEECCch-hHHHHHHHhCCCc
Confidence 99999999999999872 33 322332 355544 8995 69999995 7999999999864
No 68
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.90 E-value=7.8e-09 Score=121.65 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=44.2
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
|...+.+.|++++.+++|++|..+ +++++.+|+.. +| ++.|++ ||+|||++ ++.++...|+
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~---~~~~~~~v~t~-~g---~i~a~~-vVvaagg~-~~~l~~~~g~ 249 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRR---DGGRVIGVETT-RG---FIGAKK-VGVAVAGH-SSVVAAMAGF 249 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEc---CCCcEEEEEeC-Cc---eEECCE-EEECCChh-hHHHHHHcCC
Confidence 445567789999999999999764 23567777653 34 488975 99999996 4566665554
No 69
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.90 E-value=9.8e-09 Score=112.32 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=43.1
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-----CC---eEEEEEcCeEEEEcCCCcc
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----DG---RKHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-----~g---~~~~v~A~k~VILAAGa~~ 354 (1049)
..|...+.+.|++|+.++.|++|+.+ +++++.||.+.. .+ +..+++|+ .||+|+|+..
T Consensus 108 ~~L~~~A~~~Gv~I~~~t~V~dl~~~---~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~a 173 (257)
T PRK04176 108 AKLAAAAIDAGAKIFNGVSVEDVILR---EDPRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHcCCEEEcCceeceeeEe---CCCcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCCc
Confidence 34555566789999999999999886 244899998642 11 34679996 6999999754
No 70
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.90 E-value=4e-09 Score=125.89 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhcC-CCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~ 124 (1049)
+.++||||||||.+|+++|++|++. +|.+|+|||++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 4568999999999999999999995 689999999985
No 71
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.89 E-value=9.7e-09 Score=121.71 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=47.6
Q ss_pred HHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 292 KAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 292 ~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
...|...+++.|++|+++++|++|+.+. ++++++||....++ .+++|+ .||||+|++...+-++
T Consensus 126 ~~~L~~~a~~~Gv~i~~~~~v~~l~~~~--~~g~v~gv~~~~~~--~~i~ak-~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 126 TNALYSSAERLGVEIRYGIAVDRIPPEA--FDGAHDGPLTTVGT--HRITTQ-ALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEecC--CCCeEEEEEEcCCc--EEEEcC-EEEEcCCCcccCHHHH
Confidence 3445556678899999999999998762 14689999864333 468885 6999999998655444
No 72
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.89 E-value=1.1e-08 Score=120.64 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
+||||||||.+|+++|++|++. |.+|+||||++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999998 999999999973
No 73
>PLN02661 Putative thiazole synthesis
Probab=98.88 E-value=9.9e-09 Score=114.83 Aligned_cols=36 Identities=42% Similarity=0.631 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|+||||+|++|+++|+.|++++|.+|+|||++.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~ 126 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV 126 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 368999999999999999999987689999999975
No 74
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.85 E-value=1.4e-08 Score=110.71 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=33.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||++|||||++|+++|++|++. |.+|+||||+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~ 54 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSL 54 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 369999999999999999999998 99999999986
No 75
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.83 E-value=1.9e-08 Score=119.66 Aligned_cols=61 Identities=23% Similarity=0.227 Sum_probs=44.7
Q ss_pred hHHhhhc----CC--cEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 295 LRPIRLR----KN--LHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 295 L~~~~~~----~n--l~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
|...+++ .| ++|+++|+|++|..+ ++....|.. .+| +++|+ .||+|||++ |.+|+..+|++
T Consensus 217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~----~~~~~~V~T-~~G---~i~A~-~VVvaAG~~-S~~La~~~Gi~ 283 (497)
T PTZ00383 217 FVKHARRDALVPGKKISINLNTEVLNIERS----NDSLYKIHT-NRG---EIRAR-FVVVSACGY-SLLFAQKMGYG 283 (497)
T ss_pred HHHHHHhhhhhcCCCEEEEeCCEEEEEEec----CCCeEEEEE-CCC---EEEeC-EEEECcChh-HHHHHHHhCCC
Confidence 3344455 55 889999999999876 244555554 234 58997 599999985 88999999884
No 76
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.82 E-value=2.5e-08 Score=117.74 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=43.0
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCC
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSG 363 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SG 363 (1049)
.|...+++.|++|+++++|++|..+ ++++++|+.. ++ +++|+ .||+|+|++ +.+++..-|
T Consensus 206 ~l~~~~~~~G~~i~~~~~V~~i~~~----~~~~~~v~t~-~~---~~~a~-~VV~a~G~~-~~~l~~~~g 265 (416)
T PRK00711 206 RLAAMAEQLGVKFRFNTPVDGLLVE----GGRITGVQTG-GG---VITAD-AYVVALGSY-STALLKPLG 265 (416)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEec----CCEEEEEEeC-Cc---EEeCC-EEEECCCcc-hHHHHHHhC
Confidence 3445567789999999999999876 3567777542 33 57897 599999985 556655433
No 77
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.81 E-value=3.7e-08 Score=115.36 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=43.6
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
.|...+++.|++|+.+++|++|..+ ++.+ .|+. .++ ++.++ .||+|+|+ .++.++...|+.
T Consensus 154 aL~~~~~~~Gv~i~~~~~V~~i~~~----~~~~-~V~~-~~g---~i~ad-~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 154 AMAELIQARGGEIRLGAEVTALDEH----ANGV-VVRT-TQG---EYEAR-TLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEec----CCeE-EEEE-CCC---EEEeC-EEEECCCc-chHHHHHHhCCC
Confidence 3445556789999999999999765 2333 4443 233 58897 49999997 578888877763
No 78
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.80 E-value=5.1e-08 Score=113.54 Aligned_cols=34 Identities=38% Similarity=0.532 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
|||||||||.+|+++|++|++. |.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 899999999763
No 79
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.80 E-value=4.6e-08 Score=120.37 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=50.0
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHhCC
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVSG 363 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~SG 363 (1049)
|...+.+.|++|+.+++|++|..++ .+++++||.+.+ +++.++|+|+ .||+|||++ +.+|+...|
T Consensus 238 l~~~A~~~Ga~i~~~~~V~~l~~~~--~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 238 LACTAALAGAAVLNYAEVVSLIKDE--STGRIVGARVRDNLTGKEFDVYAK-VVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHHHHHhCCcEEEeccEEEEEEEec--CCCcEEEEEEEECCCCcEEEEEeC-EEEECCCHh-HHHHHHhcc
Confidence 3345677899999999999998761 036899998854 4566678996 599999985 788887765
No 80
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.79 E-value=3.6e-08 Score=117.67 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=45.6
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEE--eCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL--RDGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~--~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
|...+++.|++|+++++|++|..++ ++.+ .|.+. ..|+..+++|+ .||+|||+ .+.+|+...|+.
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~---~~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQS---DGSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcC---CCeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCC
Confidence 4445566799999999999998752 2332 23332 23444568997 59999998 478889888884
No 81
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.77 E-value=2e-08 Score=103.28 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=30.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+|||+|||+|++|+++|+.||++ |.||+|+|+..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCC
Confidence 469999999999999999999999 99999999975
No 82
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.76 E-value=7e-08 Score=109.78 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCC-CCCCCCC---cccccccccccC-CCCccchhHHc-hHHhhhcCCcEEecCceEEEEEeccCCCCC
Q psy4102 251 AAFVKAGEELGYEN-RDINGER---QTGFMIAQGTIR-RGSRCSTSKAF-LRPIRLRKNLHIAMETQALRLLFDKSGPVP 324 (1049)
Q Consensus 251 ~~~~~a~~~~G~~~-~d~~~~~---~~G~~~~~~~~~-~g~r~s~~~~~-L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~ 324 (1049)
...++++.+.|+++ .+..+.- ..|-.....-.+ .+......... +..+.+++|++|+.++.+.+|+.+ ++.
T Consensus 90 ~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~---~~~ 166 (518)
T COG0029 90 PEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIE---DGI 166 (518)
T ss_pred HHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhc---CCc
Confidence 44566777899998 3332211 112111111111 12222223333 334556799999999999999998 233
Q ss_pred eEEEEEEEeCC-eEEEEEcCeEEEEcCCCcc
Q psy4102 325 KAVGIEILRDG-RKHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 325 rv~GV~~~~~g-~~~~v~A~k~VILAAGa~~ 354 (1049)
.+.||.+...+ +..+++|+ .||||+|+++
T Consensus 167 ~~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 167 GVAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred eEeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 66699987643 56789996 6999999874
No 83
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.76 E-value=7.9e-08 Score=114.88 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=33.8
Q ss_pred CCCccEEEECCChhHHHHHHHHhcC-CCCeEEEEccCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGGD 125 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~~ 125 (1049)
...|||||||||+.|+++|++|++. ++++|+||||...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 3468999999999999999999984 6899999999863
No 84
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.72 E-value=2.4e-07 Score=110.07 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=42.5
Q ss_pred hcCCcEEecCceEEEEEeccCCCCCeEEEEEE--EeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEI--LRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~--~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
+..|++|+++++|++|..++ ++..+ |.+ ...++..+++|+ .||+|||+ .+.+|+..+|+.
T Consensus 196 ~~~Gv~i~~~~~V~~I~~~~---d~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 196 SHPNAQVKYNHEVVDLERLS---DGGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred hCCCcEEEeCCEEEEEEECC---CCCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 45699999999999997652 23332 232 223433468897 59999997 678999999874
No 85
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.69 E-value=9.3e-08 Score=97.51 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+-||||||+|++|+++|++||++ |.||+|+|+.-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~l 63 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKL 63 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC-CceEEEEEeec
Confidence 56999999999999999999999 99999999964
No 86
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.69 E-value=1.1e-08 Score=120.78 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
.|...+++.|++|+++|.|..++.+ +++++||.+...+...+|+|+ .||-|+| .-.|+.++|+
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~----~~~i~~V~~~~~~g~~~i~A~-~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRD----GGRITGVIVETKSGRKEIRAK-VFIDATG---DGDLAALAGA 157 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc----ccccccccccccccccccccc-ccccccc---cccccccccc
Confidence 4545556789999999999999998 579999999764447889996 7999999 3578888876
No 87
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.68 E-value=1.5e-07 Score=113.47 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=43.0
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~-g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
..+.+.|++++.+++|++|..+ ++ ..+|.+.+. |++.+++|+ .||.|||++ +.+++.
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~----~~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARRE----GG-LWRVETRDADGETRTVRAR-ALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEc----CC-EEEEEEEeCCCCEEEEEec-EEEECCCcc-HHHHHh
Confidence 4456789999999999999876 23 456766543 566789996 699999975 667765
No 88
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.68 E-value=8.7e-08 Score=111.05 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|||||||||.+|+++|++|++. |.+|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999999999999999999998 99999999986
No 89
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.66 E-value=9.8e-08 Score=102.08 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=47.4
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEE---e----CC--------eEEEEEcCeEEEEcCCCcchHHH
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL---R----DG--------RKHIIRAKKEIISSAGAINSPQL 358 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~---~----~g--------~~~~v~A~k~VILAAGa~~Tp~L 358 (1049)
-+..+.++.-+++...++|.+|... +++++||.-. . .| ..+++.|. .||+++|+|+-.+-
T Consensus 158 ~~re~~~~~~v~f~~RHrV~~l~~t----~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhe 232 (552)
T COG3573 158 RLREAQRRGRVTFRFRHRVDGLTTT----GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHE 232 (552)
T ss_pred HHHHHHhCCceEEEeeeeccceEee----CCeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHH
Confidence 3444556788999999999999987 6899998632 0 01 13578885 79999999986666
Q ss_pred HHhC
Q psy4102 359 LMVS 362 (1049)
Q Consensus 359 Ll~S 362 (1049)
|.+-
T Consensus 233 lVRr 236 (552)
T COG3573 233 LVRR 236 (552)
T ss_pred HHHh
Confidence 6554
No 90
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.66 E-value=3.1e-07 Score=110.83 Aligned_cols=39 Identities=31% Similarity=0.536 Sum_probs=35.3
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
+.++|||||||||++|+.+|+.||+. |.||+||||++..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~ 41 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLA 41 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 35679999999999999999999999 9999999998643
No 91
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.65 E-value=3.6e-07 Score=107.28 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=52.8
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHhCCCCCc
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPE 367 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~ 367 (1049)
..+...|.+|++.++|++++.+ ++ +.||++.+ +|+++.|+|+ .||-|||.+ +-+++...+..++
T Consensus 172 ~~A~~~Ga~il~~~~v~~~~re----~~-v~gV~~~D~~tg~~~~ira~-~VVNAaGpW-~d~i~~~~~~~~~ 237 (532)
T COG0578 172 RDAAEHGAEILTYTRVESLRRE----GG-VWGVEVEDRETGETYEIRAR-AVVNAAGPW-VDEILEMAGLEQS 237 (532)
T ss_pred HHHHhcccchhhcceeeeeeec----CC-EEEEEEEecCCCcEEEEEcC-EEEECCCcc-HHHHHHhhcccCC
Confidence 3456789999999999999998 45 99999985 6889999996 599999974 7888888866543
No 92
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.64 E-value=3.6e-07 Score=108.43 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=46.9
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCC--eEEEEEcCeEEEEcCCCcc
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDG--RKHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g--~~~~v~A~k~VILAAGa~~ 354 (1049)
|...+++.|++|+++|+|++|+++.+++.++|+||++..+| +...+.+++.||+++|++.
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 34456788999999999999998632234799999998633 4456778889999999874
No 93
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.64 E-value=1.6e-07 Score=109.25 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=32.6
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+|||||||||++|+++|++|++. |.+|+||||+.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 58999999999999999999998 99999999986
No 94
>KOG2404|consensus
Probab=98.63 E-value=1.1e-07 Score=101.38 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=41.2
Q ss_pred CcEEecCceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEcCeEEEEcCCCcch
Q psy4102 303 NLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 303 nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-~g~~~~v~A~k~VILAAGa~~T 355 (1049)
-++|+++++|++|+.+ +++|.||+|.+ +|++..+.++ .||+|+|+|+-
T Consensus 159 ~~ki~~nskvv~il~n----~gkVsgVeymd~sgek~~~~~~-~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN----NGKVSGVEYMDASGEKSKIIGD-AVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC----CCeEEEEEEEcCCCCccceecC-ceEEecCCcCc
Confidence 4899999999999955 68999999986 6777677776 69999999984
No 95
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.61 E-value=8.8e-08 Score=113.21 Aligned_cols=64 Identities=27% Similarity=0.320 Sum_probs=46.1
Q ss_pred hhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 290 TSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 290 ~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
....+|...+++.|++|+++++|++|+.+ ++++++|.. +++ +++|+ .||+|+|+ + ..+....|+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~----~g~v~~v~~--~g~--~i~A~-~VI~A~G~-~-s~l~~~lgl 172 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR----DGKVVGVEA--DGD--VIEAK-TVILADGV-N-SILAEKLGM 172 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe----CCEEEEEEc--CCc--EEECC-EEEEEeCC-C-HHHHHHcCC
Confidence 35566777777889999999999999876 456766642 443 57896 69999986 3 355555555
No 96
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.57 E-value=5.5e-07 Score=105.80 Aligned_cols=42 Identities=26% Similarity=0.333 Sum_probs=38.2
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI 129 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~~ 129 (1049)
|+++|||||||+|.+||++|..||.+ |+|||+||+.+..++.
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGE 42 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCcc
Confidence 46789999999999999999999998 9999999999887653
No 97
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.54 E-value=2.5e-07 Score=110.80 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=32.7
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+|||||||||.|||.||..||+. |.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence 469999999999999999999998 99999999874
No 98
>PRK10015 oxidoreductase; Provisional
Probab=98.51 E-value=2.8e-07 Score=108.90 Aligned_cols=36 Identities=39% Similarity=0.648 Sum_probs=33.7
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
++|||||||||+||+++|+.||+. |.+|+||||++.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 469999999999999999999998 999999999874
No 99
>KOG2415|consensus
Probab=98.49 E-value=3.7e-07 Score=100.46 Aligned_cols=82 Identities=20% Similarity=0.122 Sum_probs=60.5
Q ss_pred ccchhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-----CCe-------EEEEEcCeEEEEcCCCcc
Q psy4102 287 RCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----DGR-------KHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 287 r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-----~g~-------~~~v~A~k~VILAAGa~~ 354 (1049)
+..-...||...++.-|++|+.+..+.+++++ +++.|.||...+ +|. -..++|+ ..|+|-|.=+
T Consensus 181 ~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~---edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G 256 (621)
T KOG2415|consen 181 SLGQLVRWLGEKAEELGVEIYPGFAASEVLYD---EDGSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHG 256 (621)
T ss_pred EHHHHHHHHHHHHHhhCceeccccchhheeEc---CCCcEeeEeeccccccCCCCccccccccceecce-eEEEeccccc
Confidence 34456778888899999999999999999998 478899998643 222 2467885 6889888665
Q ss_pred --hHHHHHhCCCCCcccccc
Q psy4102 355 --SPQLLMVSGIGPEEHLQG 372 (1049)
Q Consensus 355 --Tp~LLl~SGIGp~~~L~~ 372 (1049)
|-|++.+-++..-.+.+.
T Consensus 257 ~Lskqi~kkf~Lr~n~e~qt 276 (621)
T KOG2415|consen 257 SLSKQIIKKFDLRENCEPQT 276 (621)
T ss_pred hhHHHHHHHhCcccCCCcce
Confidence 678887776643344443
No 100
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.45 E-value=6.6e-07 Score=104.81 Aligned_cols=38 Identities=34% Similarity=0.730 Sum_probs=34.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
.+|||||||+|+||++||++|++. |.+|+||||+....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 469999999999999999999999 89999999997543
No 101
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.44 E-value=4.8e-06 Score=94.97 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=49.9
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCC-eEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVP-KAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~-rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
+....+++|++|.++++|++|...+ ++ -.+-|.-...|+..+++|+ -|++.||+ ++=.||+.|||.
T Consensus 188 ~~~l~~~~~~~~~~~~eV~~i~r~~---dg~W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 188 VEYLQKQKGFELHLNHEVTDIKRNG---DGRWEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHhCCCcEEEecCEeCeeEECC---CCCEEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCCh
Confidence 3334556799999999999998873 34 3333333346777899996 69999998 688999999993
No 102
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.41 E-value=5.8e-07 Score=102.36 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=38.3
Q ss_pred chHHh-hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcc
Q psy4102 294 FLRPI-RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 354 (1049)
Q Consensus 294 ~L~~~-~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~ 354 (1049)
++... .+.+|++|+ +++|++|+.+ ++++.||.. .+|+ .+.++ .||+|+|.|.
T Consensus 100 ~~~~~l~~~~nl~i~-~~~V~~l~~e----~~~v~GV~~-~~g~--~~~a~-~vVlaTGtfl 152 (392)
T PF01134_consen 100 AMREKLESHPNLTII-QGEVTDLIVE----NGKVKGVVT-KDGE--EIEAD-AVVLATGTFL 152 (392)
T ss_dssp HHHHHHHTSTTEEEE-ES-EEEEEEC----TTEEEEEEE-TTSE--EEEEC-EEEE-TTTGB
T ss_pred HHHHHHhcCCCeEEE-EcccceEEec----CCeEEEEEe-CCCC--EEecC-EEEEeccccc
Confidence 34333 346899997 6789999998 589999987 4565 58886 6999999854
No 103
>KOG2820|consensus
Probab=98.41 E-value=1.7e-06 Score=93.64 Aligned_cols=61 Identities=26% Similarity=0.239 Sum_probs=45.4
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhC
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVS 362 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~S 362 (1049)
+...++..|+.++.+..|+.+.+.+ +.+..++|+.. +|. .+.|+| +|+++|++ +.+||-.|
T Consensus 159 ~~~~~~~~G~i~~dg~~v~~~~~~~--e~~~~v~V~Tt-~gs--~Y~akk-iI~t~GaW-i~klL~~~ 219 (399)
T KOG2820|consen 159 LQDKARELGVIFRDGEKVKFIKFVD--EEGNHVSVQTT-DGS--IYHAKK-IIFTVGAW-INKLLPTS 219 (399)
T ss_pred HHHHHHHcCeEEecCcceeeEeecc--CCCceeEEEec-cCC--eeecce-EEEEecHH-HHhhcCcc
Confidence 4445677899999999999998764 34566777764 343 367865 99999985 77888765
No 104
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.40 E-value=2.4e-06 Score=99.70 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=33.9
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
+.++||||||||.+|+++|+.|++. |.+|+|+|++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCcc
Confidence 3568999999999999999999999 889999999873
No 105
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=2e-06 Score=105.08 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=47.7
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.|...+.+.|++|+.++.+++|+.+ ++++|+||.+.+ +|+...|+|+ .||||||+++.
T Consensus 131 ~L~~~~~~~gi~i~~~~~~~~Li~~---~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 131 TLYQGNLKNGTTFLNEWYAVDLVKN---QDGAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHHHHHhccCCEEEECcEEEEEEEc---CCCeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 3444556789999999999999986 357999998854 6777889995 79999999985
No 106
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.37 E-value=1.1e-06 Score=109.73 Aligned_cols=34 Identities=41% Similarity=0.641 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||||||||++|+++|+.|++. |.+|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 48999999999999999999998 99999999985
No 107
>KOG0042|consensus
Probab=98.34 E-value=7.5e-07 Score=101.41 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=47.9
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHh
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMV 361 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~ 361 (1049)
+.+.|.+++-..+|.+|+.+ +++++.|+++.+ .|++++|+| |.||=|||.|. -.|+..
T Consensus 234 A~r~GA~v~Nh~ev~~Llkd---~~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATGpfs-DsIr~M 293 (680)
T KOG0042|consen 234 AARNGATVLNHVEVVSLLKD---KDGKVIGARARDHITGKEYEIRA-KVVVNATGPFS-DSIRKM 293 (680)
T ss_pred HHhcchhhhhHHHHHHHhhC---CCCceeeeEEEEeecCcEEEEEE-EEEEeCCCCcc-HHHHhh
Confidence 46789999999999999998 367999999986 799999999 57999999884 444443
No 108
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.34 E-value=2.3e-06 Score=100.29 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=40.8
Q ss_pred hhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHH
Q psy4102 290 TSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 357 (1049)
Q Consensus 290 ~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~ 357 (1049)
.....|...+++.|++|++++.|++|..+ ++ ...|+. +++ ++.++ .||+|+|+...|+
T Consensus 106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~----~~-~~~v~~--~~~--~i~ad-~VIlAtG~~s~p~ 163 (400)
T TIGR00275 106 DVLDALLNELKELGVEILTNSKVKSIKKD----DN-GFGVET--SGG--EYEAD-KVILATGGLSYPQ 163 (400)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEec----CC-eEEEEE--CCc--EEEcC-EEEECCCCcccCC
Confidence 33445556667789999999999999655 22 334544 333 47886 5999999987664
No 109
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.29 E-value=6e-06 Score=99.17 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=35.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
.||+||||||.+|+++|..||++ |++|+||||.....+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG 40 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGG 40 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCc
Confidence 58999999999999999999999 999999999877654
No 110
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.27 E-value=2.9e-06 Score=89.48 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=39.5
Q ss_pred hHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCC
Q psy4102 291 SKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSG 363 (1049)
Q Consensus 291 ~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SG 363 (1049)
...||...+++.+++|+++++|+++..++ ++ --|.+ +++ .+++|+ .||+|+|.+..|+++..-|
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~---~~--w~v~~-~~~--~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDG---DG--WTVTT-RDG--RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEET---TT--EEEEE-TTS---EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEec---cE--EEEEE-Eec--ceeeee-eEEEeeeccCCCCcccccc
Confidence 34578778888899999999999999882 33 22443 344 467786 5999999999999887554
No 111
>KOG1298|consensus
Probab=98.26 E-value=2.6e-06 Score=93.43 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=41.5
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEcCeEEEEcCCCcch
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-~g~~~~v~A~k~VILAAGa~~T 355 (1049)
++..+|+++..+| |.+|+.| ++.+.||++.. +|++.+..|. --|+|-|.|..
T Consensus 157 a~slpNV~~eeGt-V~sLlee----~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEEGT-VKSLLEE----EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEeeee-HHHHHhc----cCeEEeEEEecCCCceEEEecc-eEEEecchhHH
Confidence 4467899987765 8888877 57999999975 6777888896 58999998854
No 112
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.23 E-value=1.2e-05 Score=94.92 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=34.8
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
...+|||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCc
Confidence 35579999999999999999999998 999999999873
No 113
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.22 E-value=1.6e-05 Score=95.93 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=46.0
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
..|...+++.|++|+++++|++|..+ ++++.||++. +|+ ++.|+ .||+|+|...+-+.|+
T Consensus 233 ~~L~~~~~~~G~~i~~~~~V~~I~~~----~~~~~gv~~~-~g~--~~~ad-~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 233 ESLVKGLEKHGGQIRYRARVTKIILE----NGKAVGVKLA-DGE--KIYAK-RIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHCCCEEEeCCeeeEEEec----CCcEEEEEeC-CCC--EEEcC-EEEECCChHHHHHHhC
Confidence 34556677889999999999999987 4688999874 444 47887 4999999876665443
No 114
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.21 E-value=1.1e-05 Score=95.82 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=47.4
Q ss_pred hhHHchHHhhhcCCcE--EecCceEEEEEeccCCCCCeEEEEEEEeC-CeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 290 TSKAFLRPIRLRKNLH--IAMETQALRLLFDKSGPVPKAVGIEILRD-GRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 290 ~~~~~L~~~~~~~nl~--I~~~t~V~~Il~d~~~~~~rv~GV~~~~~-g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
....||...+++-++. |+++++|++|..+ +++. -|..... +...+..++ .||+|+|.+..|++....|+
T Consensus 112 ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~----~~~w-~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 112 EVLAYLQDFAREFKIEEMVRFETEVVRVEPV----DGKW-RVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHHHcCCcceEEecCEEEEEeec----CCeE-EEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence 3556887778888887 9999999999765 2322 2333322 233345676 59999999888887765554
No 115
>PRK07208 hypothetical protein; Provisional
Probab=98.20 E-value=4.8e-05 Score=91.63 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=35.8
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
.+..||||||||.+|+++|++|+++ |.+|+|+|+.+..++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCc
Confidence 3567999999999999999999998 999999999877654
No 116
>PRK06185 hypothetical protein; Provisional
Probab=98.20 E-value=1.7e-05 Score=93.46 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=45.9
Q ss_pred HchHHhh-hcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 293 AFLRPIR-LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 293 ~~L~~~~-~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
.+|...+ +.+|++++.++.|+++..+ +++++||.+..++.+.+++|+ -||.|.|+. |. +-...||.
T Consensus 112 ~~L~~~~~~~~~v~i~~~~~v~~~~~~----~~~v~~v~~~~~~g~~~i~a~-~vI~AdG~~-S~-vr~~~gi~ 178 (407)
T PRK06185 112 DFLAEEASAYPNFTLRMGAEVTGLIEE----GGRVTGVRARTPDGPGEIRAD-LVVGADGRH-SR-VRALAGLE 178 (407)
T ss_pred HHHHHHHhhCCCcEEEeCCEEEEEEEe----CCEEEEEEEEcCCCcEEEEeC-EEEECCCCc-hH-HHHHcCCC
Confidence 3444433 4569999999999999887 467888887653333578996 688888875 43 44555664
No 117
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.19 E-value=1.2e-05 Score=98.45 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=48.8
Q ss_pred hHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcch
Q psy4102 291 SKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 291 ~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~T 355 (1049)
....|...+++.|++|+.++.|++|+.+ +++|+||...+ +|+...|+|+ .||||||+|+.
T Consensus 121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~----~g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 121 ILHTLYQQNLKADTSFFNEYFALDLLME----DGECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEee----CCEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 3344555566789999999999999986 57999998853 6777889995 79999999975
No 118
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.13 E-value=2.2e-05 Score=95.13 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=45.1
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHH
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLM 360 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl 360 (1049)
..|...+++.|++|++++.|++|..+ +++++||++. +|+ ++.|+ .||+|++...+-..|+
T Consensus 223 ~al~~~~~~~G~~i~~~~~V~~i~~~----~~~~~~V~~~-~g~--~~~ad-~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 223 AAMAKLAEDLGGELRLNAEVIRIETE----GGRATAVHLA-DGE--RLDAD-AVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHCCCEEEECCeEEEEEee----CCEEEEEEEC-CCC--EEECC-EEEECCcHHHHHHHhc
Confidence 34445566789999999999999987 4688898763 444 47897 4999988767766554
No 119
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.08 E-value=3.8e-05 Score=92.83 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=44.2
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeC--CeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~--g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
.|...+++.|.+|+++++|++|+.+ +++++||....+ ++..++.|+ .||+++....+.+||
T Consensus 237 aL~~~~~~~G~~i~~~~~V~~I~~~----~~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 237 RLVEALKRDGGNLLTGQRVTAIHTK----GGRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLELL 299 (492)
T ss_pred HHHHHHHhcCCEEeCCceEEEEEEe----CCeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHHhc
Confidence 3545566789999999999999987 468889987543 222468897 599988875555543
No 120
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=1.8e-05 Score=94.92 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
...||+||||||+||..+|.+|++. |++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 3469999999999999999999998 99999999864
No 121
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.07 E-value=2.4e-05 Score=82.57 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+++|||+|++|+++|+.|.++ |.+|+|+|||.
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-CcEEEEEEcCC
Confidence 699999999999999999998 99999999996
No 122
>PLN02985 squalene monooxygenase
Probab=98.06 E-value=5.1e-05 Score=91.60 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=33.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+..||+||||||++|+++|..|++. |.+|+||||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcC
Confidence 5679999999999999999999998 99999999974
No 123
>KOG2844|consensus
Probab=98.06 E-value=2.7e-05 Score=91.01 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=44.8
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
.|..++++-|+.|+.+|.|++|..+ .++..||+... | .|++.+ ||=|||-+. -.+-.++|+
T Consensus 192 ala~~A~~~GA~viE~cpV~~i~~~----~~~~~gVeT~~-G---~iet~~-~VNaaGvWA-r~Vg~m~gv 252 (856)
T KOG2844|consen 192 ALARAASALGALVIENCPVTGLHVE----TDKFGGVETPH-G---SIETEC-VVNAAGVWA-REVGAMAGV 252 (856)
T ss_pred HHHHHHHhcCcEEEecCCcceEEee----cCCccceeccC-c---ceecce-EEechhHHH-HHhhhhcCC
Confidence 4556778899999999999999987 24455998743 3 488975 999999654 444455554
No 124
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.04 E-value=1.2e-05 Score=93.86 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=46.0
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHH
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQL 358 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~L 358 (1049)
..|....++.|++|+++++|+++..+ ++++++|. ..+++...+.|+ .||||+|.|.+..|
T Consensus 263 ~aL~~~l~~~Gv~I~~g~~V~~v~~~----~~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL 322 (422)
T PRK05329 263 NALRRAFERLGGRIMPGDEVLGAEFE----GGRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEe----CCEEEEEE-eeCCceEEEECC-EEEEeCCCcccCce
Confidence 34555667789999999999999876 35677765 345666789997 59999999866555
No 125
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.04 E-value=1e-05 Score=92.83 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=30.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
+|||||||||++|+++|..|++. |.+|+|+||.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhccc
Confidence 48999999999999999999999 999999999864
No 126
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.03 E-value=4.5e-05 Score=89.39 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCC
Confidence 47999999999999999999998 99999999986
No 127
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.02 E-value=8e-05 Score=84.41 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=51.7
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhC---CCCCccccc
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVS---GIGPEEHLQ 371 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~S---GIGp~~~L~ 371 (1049)
+....+..|++|+.+|+|..|+++ ++.+.+|... +|+ ++.++ .||||-|--+.-.+-++. |+ .-.-+
T Consensus 179 i~~~l~~~G~ei~f~t~VeDi~~~----~~~~~~v~~~-~g~--~i~~~-~vvlA~Grsg~dw~~~l~~K~Gv--~~~~~ 248 (486)
T COG2509 179 IREYLESLGGEIRFNTEVEDIEIE----DNEVLGVKLT-KGE--EIEAD-YVVLAPGRSGRDWFEMLHKKLGV--KMRAK 248 (486)
T ss_pred HHHHHHhcCcEEEeeeEEEEEEec----CCceEEEEcc-CCc--EEecC-EEEEccCcchHHHHHHHHHhcCc--ccccC
Confidence 334457789999999999999998 4567777764 343 58897 699999976555553333 33 22223
Q ss_pred cCCCCccccCc
Q psy4102 372 GLNIPIIKNLS 382 (1049)
Q Consensus 372 ~~gI~v~~dlp 382 (1049)
.+.|-|.++.|
T Consensus 249 p~dIGVRvE~p 259 (486)
T COG2509 249 PFDIGVRVEHP 259 (486)
T ss_pred CeeEEEEEecc
Confidence 44555555544
No 128
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.01 E-value=3.7e-05 Score=85.89 Aligned_cols=34 Identities=44% Similarity=0.755 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
|||+|||||++|+++|..|++. |.+|+|||+...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 7999999999999999999998 999999999863
No 129
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.01 E-value=2.6e-05 Score=93.58 Aligned_cols=33 Identities=36% Similarity=0.446 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|||||||+|.||+.+|..+++. |.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEeccc
Confidence 7999999999999999999998 99999999974
No 130
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.00 E-value=2.7e-05 Score=92.76 Aligned_cols=33 Identities=36% Similarity=0.544 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
+||+||||||+||+.+|.+|++. |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 59999999999999999999998 9999999985
No 131
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.00 E-value=3.5e-05 Score=92.55 Aligned_cols=36 Identities=36% Similarity=0.625 Sum_probs=33.2
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
...||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 4579999999999999999999998 99999999863
No 132
>PRK07045 putative monooxygenase; Reviewed
Probab=98.00 E-value=5.8e-05 Score=88.27 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=33.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
.+|||+|||||++|+++|..|++. |.+|+|+||.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCc
Confidence 468999999999999999999998 999999999873
No 133
>PRK08244 hypothetical protein; Provisional
Probab=97.99 E-value=9.3e-05 Score=89.45 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=32.7
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
+|||+|||||++|+++|..|++. |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 48999999999999999999998 999999999863
No 134
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=3.8e-05 Score=91.99 Aligned_cols=35 Identities=40% Similarity=0.570 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 469999999999999999999998 99999999864
No 135
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.96 E-value=3.9e-05 Score=91.87 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..||+||||||++|+.+|.+|++. |++|+|+|+++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccc
Confidence 469999999999999999999998 99999999975
No 136
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.95 E-value=7.6e-05 Score=87.74 Aligned_cols=36 Identities=44% Similarity=0.726 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..+||+||||+|+||.++|.+|++. |+||+|+|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence 3579999999999999999999998 88899999996
No 137
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.95 E-value=6.6e-05 Score=87.82 Aligned_cols=32 Identities=38% Similarity=0.665 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
|||||||||+||+++|..|++. |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999998 9999999997
No 138
>PRK06184 hypothetical protein; Provisional
Probab=97.95 E-value=0.00011 Score=88.88 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
++||+|||||++|+++|..|++. |.+|+||||.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 58999999999999999999998 99999999976
No 139
>PRK07233 hypothetical protein; Provisional
Probab=97.94 E-value=6.1e-05 Score=89.33 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
+|||||||.+|+++|+.|+++ |.+|+|||+.+..++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCC
Confidence 589999999999999999998 999999999987664
No 140
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=1.4e-05 Score=92.08 Aligned_cols=35 Identities=37% Similarity=0.468 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
++|||||||||-|||-||...|+- |.+++||--..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc-CCeEEEEEcCC
Confidence 459999999999999999999998 99999998664
No 141
>KOG4254|consensus
Probab=97.91 E-value=4.6e-05 Score=85.58 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=50.4
Q ss_pred HchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhC
Q psy4102 293 AFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVS 362 (1049)
Q Consensus 293 ~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~S 362 (1049)
..+.+.+++.|.+|.+++.|.+|+.| +++|+||.+. +|+ ++++ |.||-.|+-+.|=.-|+--
T Consensus 268 ~aia~~~~~~GaeI~tka~Vq~Illd----~gka~GV~L~-dG~--ev~s-k~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 268 FAIAEGAKRAGAEIFTKATVQSILLD----SGKAVGVRLA-DGT--EVRS-KIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred HHHHHHHHhccceeeehhhhhheecc----CCeEEEEEec-CCc--EEEe-eeeecCCchHHHHHHhCCC
Confidence 34667788999999999999999999 5899999985 555 5777 6799999988888555543
No 142
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.90 E-value=6.9e-05 Score=89.59 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
+|+|||||.+|+++|++|+++ |.+|+|+|+.+..++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Confidence 489999999999999999998 999999999887554
No 143
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.90 E-value=6.5e-05 Score=86.88 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=48.6
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhC
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVS 362 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~S 362 (1049)
|...+++.|++++.+++|+++.++ ++++++|... +++...+.|++ ||||+|+|-|..|+...
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~----~~~v~~V~t~-~g~~~~l~AD~-vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFE----GNRVTRIHTR-NHRDIPLRADH-FVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEee----CCeEEEEEec-CCccceEECCE-EEEccCCCcCHHHHhhc
Confidence 445567789999999999999987 5688887753 33344689975 99999999888887654
No 144
>PRK06126 hypothetical protein; Provisional
Probab=97.87 E-value=0.00022 Score=87.43 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=33.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..++||+|||||++|+++|..|++. |.+|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 3468999999999999999999998 99999999875
No 145
>PRK06847 hypothetical protein; Provisional
Probab=97.87 E-value=0.00019 Score=83.48 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+..||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 457999999999999999999998 99999999976
No 146
>PRK11445 putative oxidoreductase; Provisional
Probab=97.83 E-value=0.00027 Score=81.56 Aligned_cols=32 Identities=34% Similarity=0.621 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|||+|||||+||+++|..|++. .+|+|||+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence 8999999999999999999986 8999999986
No 147
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.83 E-value=0.00026 Score=86.55 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=33.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
...+||+|||+|++|+++|..|++. |.+|+||||.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 3569999999999999999999998 99999999986
No 148
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.80 E-value=0.00024 Score=83.13 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCC
Confidence 47999999999999999999998 99999999986
No 149
>PLN02507 glutathione reductase
Probab=97.80 E-value=7.9e-05 Score=89.86 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=31.9
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEcc
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEa 122 (1049)
..+||+||||||++|..+|.+|++. |++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 3469999999999999999999998 999999997
No 150
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.80 E-value=0.00018 Score=84.13 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=31.7
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
.+||+|||||++|+++|..|++. |.+|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 57999999999999999999999 8999999997
No 151
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.79 E-value=0.00039 Score=81.67 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=32.0
Q ss_pred CccEEEECCChhHHHHHHHHhcCC-CCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENP-DWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~-G~kVLVLEaG~ 124 (1049)
.|||||||||++|+++|..|++.+ |.+|+|+|+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 389999999999999999999972 59999999986
No 152
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.76 E-value=8.4e-05 Score=90.29 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=50.3
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
..+.+.|++|+++++|++|..+ +++++||++.+ +|+..+|+|+ .||.|||++ +.+|+...|+
T Consensus 136 ~~A~~~Ga~i~~~t~V~~i~~~----~~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 136 LDAQEHGARIFTYTKVTGLIRE----GGRVTGVKVEDHKTGEEERIEAQ-VVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHHHcCCEEEcCcEEEEEEEE----CCEEEEEEEEEcCCCcEEEEEcC-EEEECCCcc-hHHHHHhcCC
Confidence 4566789999999999999886 57899998864 5666789997 599999975 7888877765
No 153
>PRK07190 hypothetical protein; Provisional
Probab=97.75 E-value=0.00026 Score=85.14 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..+||||||||++|+++|..|++. |.+|+||||.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~ 38 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSD 38 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 458999999999999999999998 99999999986
No 154
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.72 E-value=0.00042 Score=80.67 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 7999999999999999999998 99999999975
No 155
>PRK06834 hypothetical protein; Provisional
Probab=97.72 E-value=0.00043 Score=83.30 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=32.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
++||||||+|++|+++|..|++. |.+|+|||+.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCC
Confidence 58999999999999999999998 99999999976
No 156
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.71 E-value=0.00016 Score=84.31 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
||||||||++|+++|..|++. |.+|+|+||.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCc
Confidence 899999999999999999998 999999999974
No 157
>PRK07538 hypothetical protein; Provisional
Probab=97.66 E-value=0.00036 Score=82.32 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCC
Confidence 899999999999999999998 99999999976
No 158
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.63 E-value=0.00011 Score=88.40 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=59.8
Q ss_pred ccccCccCCCCCCcccccCCCceeeccCCceEeeccccCCCCCCCchhHHHHHHHHHHHHhHhhh
Q psy4102 929 YTIRPALMGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMKQSYL 993 (1049)
Q Consensus 929 ~~~~tcrMGp~~d~~~VVD~~LRV~Gv~nLRVvDASImP~~~sgNt~atv~mIaEraAd~I~~~~ 993 (1049)
+..|||+||. ++.++|||+++||||++||+|+|+|+||+.+++||++|+||+|+|+||.|.+.+
T Consensus 480 H~~Gt~rMG~-dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 480 HLAGTTRIGF-DEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred cCCCCeecCC-CCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 3468999996 688999999999999999999999999999999999999999999999998765
No 159
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.62 E-value=6e-05 Score=64.55 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=28.9
Q ss_pred EECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 95 VIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 95 VVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
|||||++|+++|++|+++ |.+|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence 899999999999999998 99999999998654
No 160
>KOG2665|consensus
Probab=97.62 E-value=0.0003 Score=75.66 Aligned_cols=211 Identities=21% Similarity=0.232 Sum_probs=111.2
Q ss_pred CCCccEEEECCChhHHHHHHHHhc-CCCCeEEEEccCCCCCCCCcccchhhccccCcCCCCCccCCCCCCcchhhccCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSE-NPDWKILLIEAGGDENEISDIPSLAGYLQLSELDWKYKTEPPMGDSAYCLAMVGD 166 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae-~~G~kVLVLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 166 (1049)
.+.||.||||||..||+.|.+|.- .|+.+|+||||-....-. | .++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~h-----------------------q----------Sgh 92 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVH-----------------------Q----------SGH 92 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhcee-----------------------e----------ccc
Confidence 467999999999999999999975 689999999997632200 0 000
Q ss_pred ccccCCcceecCcHHHHhhhhhcCChhhhHHHHhcCCCCCCccChHHHHHHHhhcccCcccCCCCCCCCCcccccCCCCC
Q psy4102 167 RCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWH 246 (1049)
Q Consensus 167 ~~~~~~G~~lGGsS~in~~~~~r~~~~d~d~w~~~G~~~Ws~~~l~py~~k~E~~~~~~~~~~~~~g~~G~l~v~~~~~~ 246 (1049)
-|..+.+++|..+ ..++. ++-..+ .+-+..|+++-+ --+...|.+-++..+..
T Consensus 93 -----------NSgViHaGIYY~P--~SLKA--klCV~G--~~LlY~yc~e~~----------IpyKk~GKLIVAt~~~E 145 (453)
T KOG2665|consen 93 -----------NSGVIHAGIYYKP--GSLKA--KLCVEG--RELLYEYCDEKK----------IPYKKTGKLIVATESEE 145 (453)
T ss_pred -----------ccceeeeeeeeCC--cccch--hhhhcc--HHHHHHHhhhcC----------CChhhcceEEEEeChhh
Confidence 0112222333221 11110 111110 001122332211 12334577777777777
Q ss_pred cHHHHHHHHHHHhcCCCC-CCCCCCC-------cccccccccccCCCC-ccchhHHchHHhhhcCCcEEecCceEEEEEe
Q psy4102 247 SPLAAAFVKAGEELGYEN-RDINGER-------QTGFMIAQGTIRRGS-RCSTSKAFLRPIRLRKNLHIAMETQALRLLF 317 (1049)
Q Consensus 247 ~~~~~~~~~a~~~~G~~~-~d~~~~~-------~~G~~~~~~~~~~g~-r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~ 317 (1049)
-|..+.+++.....|++- +-+.+.+ +.|.. ...+.+.|- -+....-.+....+.-+..|.+|-++.++..
T Consensus 146 iprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvk-Al~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~ 224 (453)
T KOG2665|consen 146 IPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVK-ALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQ 224 (453)
T ss_pred cchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhh-hhcCCCcceeehHHHHHHHHHHHHHhcccccccceeccchh
Confidence 777788887777777764 2222211 11111 111112221 1111111122334567899999999999876
Q ss_pred ccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 318 DKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 318 d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
+.+ ..--.-+.+ .+|+..+++. | -+++++++.+.++-.+||.
T Consensus 225 n~~--~~~~Ypivv-~ngk~ee~r~-~-~~vtc~gl~sdr~aa~sgc 266 (453)
T KOG2665|consen 225 NKE--ATFSYPIVV-LNGKGEEKRT-K-NVVTCAGLQSDRCAALSGC 266 (453)
T ss_pred ccC--CCCCCceEE-ecCccceeEE-e-EEEEeccccHhHHHHHhCC
Confidence 531 111111222 3444456777 4 4455555999999999986
No 161
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.62 E-value=0.0007 Score=82.96 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..++||+|||||++|+++|..|++. |.+|+|+||.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 3568999999999999999999998 99999999986
No 162
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00027 Score=83.73 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCe-EEEEccCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWK-ILLIEAGGD 125 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~k-VLVLEaG~~ 125 (1049)
.+.+||+|||||.+|+++|++|.+. |.. ++|+||.+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~ 43 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDD 43 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCC
Confidence 4578999999999999999999998 777 999999974
No 163
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.59 E-value=0.00029 Score=84.53 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=43.8
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCC-eEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVP-KAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~-rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
...++.|.+|+++++|++|..+..+++. +++||.+..++....+.|+ .||+|+....+.+||
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhC
Confidence 4456689999999999999986211112 4888887432212357887 599999988777776
No 164
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=97.54 E-value=2.4e-05 Score=77.82 Aligned_cols=51 Identities=49% Similarity=0.853 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCccccccccccccceEeeccccCCccccCCCCCCccccccc
Q psy4102 870 TCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEK 921 (1049)
Q Consensus 870 t~~m~p~~d~~~vvD~~~~v~gv~~lRvvdas~~p~~~~~~~~~~~~~i~e~ 921 (1049)
||+|++..+. .|+|++++++|++||||+|+|+||..+.++++.+.++++|+
T Consensus 93 t~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~r 143 (144)
T PF05199_consen 93 TCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAER 143 (144)
T ss_dssp TT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHH
T ss_pred ceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeC
Confidence 5899987765 99999999999999999999999999999999998888775
No 165
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.50 E-value=0.00026 Score=84.17 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=39.4
Q ss_pred chhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCC
Q psy4102 289 STSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 352 (1049)
Q Consensus 289 s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa 352 (1049)
.....+|...+.+.|++++.++ |+++..+ +++.+++|+.. +|+ +++|+ -||=|+|-
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~---~~g~i~~v~~~-~g~--~i~ad-~~IDASG~ 209 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELD---EDGRITAVRLD-DGR--TIEAD-FFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE----TTSEEEEEEET-TSE--EEEES-EEEE-SGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEc---CCCCEEEEEEC-CCC--EEEEe-EEEECCCc
Confidence 3466778887888899999885 8888887 36789999874 454 68996 58888883
No 166
>PLN02487 zeta-carotene desaturase
Probab=97.49 E-value=0.0021 Score=78.24 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=44.2
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCC-CeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPV-PKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~-~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
...++.|++|++++.|++|..+.++++ ++++||++.++++...+.|+ .||+|++.....+||
T Consensus 303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 345788999999999999999732111 26899988533333457786 599999976555554
No 167
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.49 E-value=0.0001 Score=87.53 Aligned_cols=36 Identities=36% Similarity=0.446 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..+|||||||||+||+++|..||+. |.+|+|||+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 4579999999999999999999998 99999999974
No 168
>PLN02612 phytoene desaturase
Probab=97.49 E-value=0.0011 Score=81.19 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=34.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
...||+|||+|.+|+++|++|++. |.+|+|+|+.+...
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCC
Confidence 357999999999999999999998 99999999987644
No 169
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.42 E-value=0.00029 Score=85.08 Aligned_cols=34 Identities=32% Similarity=0.458 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
-|+|||||++|+++|..|.|. |.+|+++||.+..
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDI 36 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCC
Confidence 489999999999999999998 9999999998743
No 170
>KOG2852|consensus
Probab=97.41 E-value=0.00016 Score=76.95 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=44.3
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
+..+.++.|++++.+. |.++.-+ ..|+.+|-... .+.-....+. .||||+|. .|++||..-+|
T Consensus 154 ~sea~k~~~V~lv~Gk-v~ev~dE----k~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 154 LSEAEKRGGVKLVFGK-VKEVSDE----KHRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHhhcCeEEEEee-eEEeecc----cccccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc
Confidence 4456677889999875 7777533 57888886642 2223345665 49999998 58999998877
No 171
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.41 E-value=0.00081 Score=76.77 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=41.8
Q ss_pred chHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 294 FLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 294 ~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
.|...+.+.|++++.+++|+.|..+ ++++++|.. .+| +++|++ ||+|+|++ +++|+
T Consensus 142 ~l~~~~~~~g~~~~~~~~v~~i~~~----~~~~~~v~~-~~g---~~~a~~-vV~a~G~~-~~~l~ 197 (337)
T TIGR02352 142 ALEKALEKLGVEIIEHTEVQHIEIR----GEKVTAIVT-PSG---DVQADQ-VVLAAGAW-AGELL 197 (337)
T ss_pred HHHHHHHHcCCEEEccceEEEEEee----CCEEEEEEc-CCC---EEECCE-EEEcCChh-hhhcc
Confidence 4445667789999999999999876 467888864 233 588975 99999974 55543
No 172
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.00018 Score=77.98 Aligned_cols=38 Identities=26% Similarity=0.574 Sum_probs=34.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
.||+||||||.+|+++|..|++. |++||||||-+..++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCC
Confidence 38999999999999999988888 999999999876553
No 173
>KOG2853|consensus
Probab=97.38 E-value=0.0019 Score=70.28 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=32.9
Q ss_pred CCCccEEEECCChhHHHHHHHHhc---CCCCeEEEEccCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSE---NPDWKILLIEAGGD 125 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae---~~G~kVLVLEaG~~ 125 (1049)
...+||+|||||..|++.|+-|-| +.|.+|+|+|+.+-
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 356899999999999999999876 44799999999863
No 174
>PRK06116 glutathione reductase; Validated
Probab=97.36 E-value=0.00017 Score=86.22 Aligned_cols=36 Identities=47% Similarity=0.641 Sum_probs=33.1
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..+||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 3469999999999999999999998 99999999963
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.33 E-value=0.0014 Score=79.63 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=31.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEcc
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEa 122 (1049)
.+.||++|||||+||+.+|.+|++. |.+|+|+|.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec
Confidence 3469999999999999999999998 999999975
No 176
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.29 E-value=0.0012 Score=79.11 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|+||||+|++|+.+|.+|++. |.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 799999999999999999998 99999999874
No 177
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.27 E-value=0.00021 Score=85.24 Aligned_cols=35 Identities=46% Similarity=0.732 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
++||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 369999999999999999999998 99999999964
No 178
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.27 E-value=0.00023 Score=84.79 Aligned_cols=36 Identities=33% Similarity=0.692 Sum_probs=33.2
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
++||+||||||+||+.+|.+|++. |++|+|+|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence 359999999999999999999998 999999999753
No 179
>KOG2311|consensus
Probab=97.27 E-value=0.00032 Score=79.28 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=49.8
Q ss_pred hcCCcEEecCceEEEEEeccC-CCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCCCccccc-cCCCCc
Q psy4102 300 LRKNLHIAMETQALRLLFDKS-GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQ-GLNIPI 377 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~-~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~-~~gI~v 377 (1049)
..+|++|+.++ |..|++.+. ++..++.||... +|. .|+|+ -|||.+|.|-+.+|- ||-+.+.. ..|
T Consensus 136 st~nL~ire~~-V~dliv~~~~~~~~~~~gV~l~-dgt--~v~a~-~VilTTGTFL~~~I~----iGlk~~pAGRiG--- 203 (679)
T KOG2311|consen 136 STPNLEIREGA-VADLIVEDPDDGHCVVSGVVLV-DGT--VVYAE-SVILTTGTFLRGQIN----IGLKTHPAGRIG--- 203 (679)
T ss_pred cCCcchhhhhh-hhheeeccCCCCceEEEEEEEe-cCc--Eeccc-eEEEeeccceeeEEe----eccccccCcccc---
Confidence 45799999876 566655432 222378899875 454 58896 599999999777764 33332222 223
Q ss_pred cccCc---ccccccccc
Q psy4102 378 IKNLS---VGHNLQDHV 391 (1049)
Q Consensus 378 ~~dlp---VG~nl~DH~ 391 (1049)
+.| ++++|+.|-
T Consensus 204 --e~ps~~Lse~l~klG 218 (679)
T KOG2311|consen 204 --EQPSIGLSETLQKLG 218 (679)
T ss_pred --CCcchHHHHHHHHhC
Confidence 444 778888753
No 180
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.26 E-value=0.00024 Score=83.20 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=33.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||||||||++|+++|..|++. |.+|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 3569999999999999999999998 99999999975
No 181
>PRK06370 mercuric reductase; Validated
Probab=97.26 E-value=0.00025 Score=85.02 Aligned_cols=37 Identities=46% Similarity=0.581 Sum_probs=33.9
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+..+||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 34579999999999999999999998 99999999974
No 182
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.24 E-value=0.00029 Score=82.52 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=33.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
...+||+|||||++|+++|..|++. |.+|+|||+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCC
Confidence 3568999999999999999999998 99999999986
No 183
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.24 E-value=0.00022 Score=85.46 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=31.7
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+||+||||+|+||+++|.+|++. |++|+|+|+.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 49999999999999999999998 99999999743
No 184
>PTZ00058 glutathione reductase; Provisional
Probab=97.23 E-value=0.00024 Score=86.34 Aligned_cols=35 Identities=43% Similarity=0.653 Sum_probs=32.8
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
+.+||+||||||+||..+|.+|++. |++|+|||++
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc
Confidence 3579999999999999999999998 9999999986
No 185
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.22 E-value=0.00026 Score=83.09 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+||||||||+||+++|..||+. |.+|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 6999999999999999999998 99999999964
No 186
>PTZ00367 squalene epoxidase; Provisional
Probab=97.20 E-value=0.00061 Score=82.92 Aligned_cols=36 Identities=36% Similarity=0.572 Sum_probs=33.3
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..+|||||||||++|+++|..|++. |.+|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 3469999999999999999999998 99999999975
No 187
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.20 E-value=0.00031 Score=82.04 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=33.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
..|||||||||++|+++|..|++. |.+|+|+|+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCC
Confidence 468999999999999999999998 999999999874
No 188
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.20 E-value=0.00036 Score=80.39 Aligned_cols=36 Identities=33% Similarity=0.671 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
||++|||||.+|+++|.+|++. |.+|+|||+.+..+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence 7999999999999999999987 89999999976544
No 189
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.17 E-value=0.00037 Score=81.47 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|||||||||++|+++|..|++. |.+|+|+|+.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCC
Confidence 468999999999999999999998 99999999975
No 190
>PRK08013 oxidoreductase; Provisional
Probab=97.17 E-value=0.00035 Score=82.09 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
+|||||||||++|+++|..|++. |.+|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCC
Confidence 58999999999999999999998 999999999873
No 191
>PRK09126 hypothetical protein; Provisional
Probab=97.16 E-value=0.00033 Score=82.06 Aligned_cols=35 Identities=37% Similarity=0.496 Sum_probs=33.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
+|||||||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 58999999999999999999998 999999999874
No 192
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.16 E-value=0.00035 Score=83.09 Aligned_cols=34 Identities=41% Similarity=0.681 Sum_probs=32.5
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+||+||||||+||+.+|.+|++. |.+|+|+|+++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCC
Confidence 69999999999999999999998 99999999986
No 193
>PLN02463 lycopene beta cyclase
Probab=97.14 E-value=0.00045 Score=81.81 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=33.2
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
...||+||||||+||+++|..|++. |.+|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCc
Confidence 4569999999999999999999998 99999999975
No 194
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.13 E-value=0.00041 Score=81.64 Aligned_cols=34 Identities=29% Similarity=0.614 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+|||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 48999999999999999999998 99999999986
No 195
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.12 E-value=0.00082 Score=76.83 Aligned_cols=35 Identities=37% Similarity=0.480 Sum_probs=26.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.||+|+||.|++++++|..|.+.+..+++.||+-+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 48999999999999999999997569999999876
No 196
>KOG1399|consensus
Probab=97.10 E-value=0.0028 Score=74.38 Aligned_cols=34 Identities=35% Similarity=0.535 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
-+++|||||+|||++|..|.+. |..|.|+||.+.
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDD 40 (448)
T ss_pred CceEEECcchHHHHHHHHHHHC-CCCceEEEecCC
Confidence 4899999999999999999998 999999999974
No 197
>PLN02546 glutathione reductase
Probab=97.09 E-value=0.00038 Score=84.71 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=31.8
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEcc
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEa 122 (1049)
..+||+||||+|++|..+|.+|++. |+||+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 3469999999999999999999998 999999996
No 198
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.08 E-value=0.00048 Score=82.63 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 359999999999999999999998 99999999974
No 199
>KOG0029|consensus
Probab=97.06 E-value=0.00053 Score=81.83 Aligned_cols=40 Identities=33% Similarity=0.456 Sum_probs=36.0
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
.+..+|||||||.||++||..|.+. |.+|+|||+-++.++
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCc
Confidence 3467999999999999999999999 999999999887654
No 200
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.05 E-value=0.0005 Score=84.12 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=33.0
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||||||||+||+++|.+|++. |.+|+|+|++.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~ 37 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDD 37 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCC
Confidence 3469999999999999999999998 99999999975
No 201
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.05 E-value=0.00052 Score=80.17 Aligned_cols=34 Identities=32% Similarity=0.588 Sum_probs=32.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+|||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 48999999999999999999998 99999999875
No 202
>PRK09897 hypothetical protein; Provisional
Probab=97.04 E-value=0.0079 Score=72.60 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhcC-CCCeEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~~ 125 (1049)
.+++|||+|++|+.+|.+|++. ...+|.|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 4799999999999999999874 2359999999764
No 203
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.04 E-value=0.00057 Score=81.90 Aligned_cols=33 Identities=42% Similarity=0.656 Sum_probs=31.2
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
+||+||||||+||+.+|.+|++. |++|+|||++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 49999999999999999999998 9999999993
No 204
>PLN02697 lycopene epsilon cyclase
Probab=97.03 E-value=0.00053 Score=82.54 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=32.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
+..|||||||||+||+++|..|++. |.+|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCc
Confidence 4569999999999999999999998 9999999985
No 205
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.00 E-value=0.00057 Score=82.18 Aligned_cols=35 Identities=40% Similarity=0.545 Sum_probs=32.4
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
..+||+||||||+||+++|.+|++. |++|+|||++
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~ 36 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAW 36 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 3469999999999999999999998 9999999984
No 206
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.00 E-value=0.00061 Score=79.22 Aligned_cols=33 Identities=39% Similarity=0.677 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHH--hcCCCCeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRL--SENPDWKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rL--ae~~G~kVLVLEaG~~ 125 (1049)
||||||+|+||+++|.+| ++. |.+|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCcc
Confidence 899999999999999999 665 999999999864
No 207
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.00 E-value=0.0005 Score=82.56 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
.+||+||||+|++|..+|.++++..|+||+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999438999999985
No 208
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.99 E-value=0.0006 Score=79.70 Aligned_cols=32 Identities=38% Similarity=0.577 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
||||||||+||+++|.+|++. |.+|+|||+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCC
Confidence 899999999999999999987 99999999986
No 209
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.98 E-value=0.00061 Score=81.70 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
||+||||||+||+.+|.+|++. |++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence 7999999999999999999998 99999999875
No 210
>PRK14694 putative mercuric reductase; Provisional
Probab=96.98 E-value=0.00065 Score=81.56 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=33.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+..||+||||||+||+++|.+|++. |++|+|+|++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 4579999999999999999999998 99999999974
No 211
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.97 E-value=0.00065 Score=76.13 Aligned_cols=33 Identities=42% Similarity=0.608 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
||+||||||+||+.+|..|++. |.+|+|+|+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence 7999999999999999999998 99999999985
No 212
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.97 E-value=0.00071 Score=80.48 Aligned_cols=33 Identities=33% Similarity=0.720 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhc----CCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSE----NPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae----~~G~kVLVLEaG~ 124 (1049)
|||||||||++|+++|..|++ . |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 799999999999999999998 5 99999999964
No 213
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00066 Score=76.03 Aligned_cols=35 Identities=37% Similarity=0.673 Sum_probs=31.2
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCe-EEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWK-ILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~k-VLVLEaG~ 124 (1049)
+.||+||||||+||++||..++.. +.+ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence 469999999999999999999998 888 88888765
No 214
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.95 E-value=0.00072 Score=81.04 Aligned_cols=34 Identities=53% Similarity=0.738 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
.+||+||||||++|+.+|.+|++. |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 359999999999999999999998 9999999994
No 215
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.92 E-value=0.00079 Score=79.27 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=31.6
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
.|||+|||||++|+++|..|++. |.+|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 58999999999999999999998 9999999996
No 216
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.92 E-value=0.00076 Score=81.46 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
..||+||||+|+||+.+|.+|++. |++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCeEEEEecc
Confidence 369999999999999999999998 9999999975
No 217
>PRK13748 putative mercuric reductase; Provisional
Probab=96.90 E-value=0.00082 Score=82.66 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||+||||||+||+++|.+|++. |++|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 469999999999999999999998 99999999874
No 218
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.90 E-value=0.00088 Score=78.11 Aligned_cols=33 Identities=42% Similarity=0.543 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCC-CeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPD-WKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G-~kVLVLEaG~~ 125 (1049)
||||||||++|+++|..|++. | .+|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCc
Confidence 899999999999999999998 9 99999999864
No 219
>PRK06996 hypothetical protein; Provisional
Probab=96.86 E-value=0.001 Score=78.08 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=32.7
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCC---CCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENP---DWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~---G~kVLVLEaG~ 124 (1049)
.++|||+|||||++|+++|..|++.+ |.+|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 45789999999999999999999973 36899999975
No 220
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.84 E-value=0.00096 Score=77.39 Aligned_cols=33 Identities=48% Similarity=0.871 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhcC-CCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~ 124 (1049)
||||||||+||+++|.+|++. +|.+|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999984 689999999986
No 221
>PLN02268 probable polyamine oxidase
Probab=96.82 E-value=0.0011 Score=78.80 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
+|||||||.+|+++|++|.++ |.+|+||||.+..++
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCc
Confidence 799999999999999999997 999999999988764
No 222
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.77 E-value=0.0011 Score=81.84 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=32.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
++||+||||+|++|..+|.++++. |+||+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 479999999999999999999998 9999999975
No 223
>PLN02576 protoporphyrinogen oxidase
Probab=96.76 E-value=0.0014 Score=79.25 Aligned_cols=41 Identities=27% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
...+||||||||.+|+++|++|+++.|.+|+|+||.+..++
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 34679999999999999999999853689999999887654
No 224
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.74 E-value=0.14 Score=59.99 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=43.1
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEE--EEcCeEEEEcCCCc
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHI--IRAKKEIISSAGAI 353 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~--v~A~k~VILAAGa~ 353 (1049)
.++..||++..+|+|+.|.++.+++..+|+++.+.++|+..+ +..+.-|++.-|.+
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 347889999999999999998654456788988887766544 45666788888864
No 225
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.73 E-value=0.0013 Score=78.50 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=32.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCC--CeEEEEccCCCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPD--WKILLIEAGGDENE 128 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G--~kVLVLEaG~~~~~ 128 (1049)
+|||||||.+|+++|++|+++ | .+|+|+|+.+..++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcc
Confidence 599999999999999999997 6 89999999877654
No 226
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.67 E-value=0.0016 Score=76.32 Aligned_cols=35 Identities=40% Similarity=0.475 Sum_probs=31.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcC--CCCeEEEEccC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSEN--PDWKILLIEAG 123 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~--~G~kVLVLEaG 123 (1049)
..|||+|||||++|+++|..|++. .|.+|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 358999999999999999999874 38999999995
No 227
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.67 E-value=0.0016 Score=76.32 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=32.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
...||+|||||++|+++|..|++. |.+|+|+||.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~ 37 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAA 37 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCc
Confidence 357999999999999999999998 99999999986
No 228
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.002 Score=73.75 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=35.9
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
.+..||||||+|.+||++|++|.++ |++|+|||+-+...+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GG 44 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGG 44 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCc
Confidence 3568999999999999999999998 999999999887653
No 229
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.65 E-value=0.0019 Score=77.48 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCC---CCeEEEEccCCCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENP---DWKILLIEAGGDENE 128 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~---G~kVLVLEaG~~~~~ 128 (1049)
.|+||||||.+|+++|++|+++. |.+|+|+||.+..++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 59999999999999999999863 799999999887654
No 230
>PRK07236 hypothetical protein; Provisional
Probab=96.64 E-value=0.0017 Score=75.88 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=32.2
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||||||||++|+++|..|++. |.+|+|+||.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 47999999999999999999998 99999999985
No 231
>PRK07588 hypothetical protein; Provisional
Probab=96.62 E-value=0.0016 Score=76.32 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCC
Confidence 899999999999999999998 99999999986
No 232
>PRK14727 putative mercuric reductase; Provisional
Probab=96.62 E-value=0.0016 Score=78.45 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..||+||||+|++|..+|.+|++. |.+|+|+|++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGAD 49 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 469999999999999999999998 99999999975
No 233
>PRK06753 hypothetical protein; Provisional
Probab=96.59 E-value=0.0018 Score=75.26 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
||||||||++|+++|..|++. |.+|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 799999999999999999998 999999999873
No 234
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.54 E-value=0.0024 Score=67.03 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|+||||||+||+.+|.+|++. +.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 799999999999999999987 99999998875
No 235
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.53 E-value=0.0023 Score=79.42 Aligned_cols=38 Identities=32% Similarity=0.514 Sum_probs=34.1
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.+++||+|||||++|+++|..|++.+|.+|+|||+-+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 45689999999999999999999993389999999976
No 236
>PLN02676 polyamine oxidase
Probab=96.51 E-value=0.0055 Score=73.70 Aligned_cols=39 Identities=33% Similarity=0.468 Sum_probs=34.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGGDENE 128 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~~~~~ 128 (1049)
..+||||||||.+|+++|.+|++. |. +|+|||+.+...+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCC
Confidence 357999999999999999999998 87 6999999887654
No 237
>PRK10262 thioredoxin reductase; Provisional
Probab=96.51 E-value=0.0023 Score=72.81 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=32.5
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.+||+|||||+||+.+|..|++. |.+|+++|+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~~ 39 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGME 39 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEeec
Confidence 3568999999999999999999998 89999999653
No 238
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.47 E-value=0.0024 Score=76.88 Aligned_cols=34 Identities=35% Similarity=0.597 Sum_probs=31.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+||+||||+|++|..+|.+|++. |++|+|||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~~ 35 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFVT 35 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 59999999999999999999998 99999999863
No 239
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.39 E-value=0.0029 Score=73.33 Aligned_cols=34 Identities=32% Similarity=0.281 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
-||+|||||.+||.+|..||+. |.+|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCc
Confidence 3899999999999999999998 999999998764
No 240
>PLN02568 polyamine oxidase
Probab=96.37 E-value=0.0037 Score=75.86 Aligned_cols=40 Identities=28% Similarity=0.501 Sum_probs=34.5
Q ss_pred CCccEEEECCChhHHHHHHHHhcCC----CCeEEEEccCCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENP----DWKILLIEAGGDENE 128 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~----G~kVLVLEaG~~~~~ 128 (1049)
+.+||||||+|.+|+++|.+|++.+ +.+|+|+|+....++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 3479999999999999999999872 389999999887654
No 241
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.0031 Score=73.57 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=32.9
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
|+|+|||.||+++|++||++ |.+|.|+|+++..++
T Consensus 3 Vai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GG 37 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGG 37 (485)
T ss_pred EEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCc
Confidence 89999999999999999999 999999999988664
No 242
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.36 E-value=0.024 Score=67.53 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhcC-CCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~ 124 (1049)
.|||||||+||+.+|.+|.+. ++.+|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 599999999999999999873 467999999986
No 243
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0037 Score=68.14 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=33.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
+|||+|||||.||+++|.+|++. |+++.+|-+|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~-Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQA-GKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhc-CCcEEEEeCChh
Confidence 59999999999999999999998 999999999974
No 244
>PRK05868 hypothetical protein; Validated
Probab=96.24 E-value=0.0042 Score=72.24 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCC
Confidence 899999999999999999998 999999999863
No 245
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.24 E-value=0.043 Score=63.47 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhcCC-CCeEEEEccCCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENP-DWKILLIEAGGDEN 127 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~-G~kVLVLEaG~~~~ 127 (1049)
-+||||||.+|+.+|.+|+..+ +.+|+|||+.....
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 4899999999999999999973 58999999987643
No 246
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.23 E-value=0.0057 Score=79.86 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=49.1
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
...++.|++|++++.|+++.-+ +++.+|++.. +|...++.++ .|+++.|-..+..|+...|..
T Consensus 359 ~~L~~~GV~i~~~~~v~~i~g~-----~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 359 AEARELGIEVLTGHVVAATEGG-----KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHHHcCCEEEcCCeEEEEecC-----CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 4456789999999999998533 5688888764 4455678997 699999988888888877653
No 247
>PRK07846 mycothione reductase; Reviewed
Probab=96.18 E-value=0.0039 Score=74.39 Aligned_cols=32 Identities=38% Similarity=0.792 Sum_probs=28.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+||+||||+|++|..+|.++ . |+||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCC
Confidence 48999999999999998774 4 89999999864
No 248
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.18 E-value=0.0043 Score=74.42 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=32.4
Q ss_pred cEEEECCChhHHHHHHHHhcCC-----CCeEEEEccCCCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENP-----DWKILLIEAGGDENE 128 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~-----G~kVLVLEaG~~~~~ 128 (1049)
+|||||||.+|+++|++|++.+ +.+|+|||+.+..++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 6999999999999999999852 479999999887654
No 249
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.17 E-value=0.016 Score=63.84 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
.-++.|||+|.+|+++|+.|+.. .+|.|.|++...++
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGG 44 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGG 44 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccC
Confidence 35799999999999999999986 79999999987654
No 250
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.13 E-value=0.0046 Score=75.07 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=31.1
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEcc
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEa 122 (1049)
...||++|||||+||+++|.+|++. |.+|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec
Confidence 3469999999999999999999998 999999974
No 251
>KOG1335|consensus
Probab=96.11 E-value=0.0053 Score=68.15 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||+||||+|++|-+||.++|+. |.+...+|+..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccC
Confidence 579999999999999999999999 99999999965
No 252
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.10 E-value=0.0045 Score=73.93 Aligned_cols=32 Identities=38% Similarity=0.736 Sum_probs=27.6
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+||+||||+|++|..+|.++ . |+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~-g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--A-DKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--C-CCeEEEEeCCC
Confidence 59999999999999987654 4 99999999863
No 253
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.08 E-value=0.13 Score=51.99 Aligned_cols=31 Identities=26% Similarity=0.487 Sum_probs=27.2
Q ss_pred EEECCChhHHHHHHHHhcCC----CCeEEEEccCC
Q psy4102 94 IVIGAGSAGAVVANRLSENP----DWKILLIEAGG 124 (1049)
Q Consensus 94 IVVG~G~aG~~aA~rLae~~----G~kVLVLEaG~ 124 (1049)
.|||+|++|++++.+|.+.. ..+|.|+|+.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 49999999999999999863 56999999965
No 254
>KOG4716|consensus
Probab=96.07 E-value=0.005 Score=67.05 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=32.9
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..+||.||||||.+|+++|.++|.. |+||.+|+.=.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecc
Confidence 4579999999999999999999998 99999999753
No 255
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.06 E-value=0.0059 Score=75.13 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
...++|+|||||++|+++|..|++. |.+|.|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 4568999999999999999999998 99999999975
No 256
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.027 Score=61.78 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=47.5
Q ss_pred hcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHhC
Q psy4102 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVS 362 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~S 362 (1049)
.-+|++|++|+.-++|.=| +.+|+|..|.+ .|+.+.+.-. .|.+--|-+-+..+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gd----g~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGD----GDKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecC----CceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 4479999999999999765 46999999975 5777777765 599999988888888765
No 257
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.01 E-value=0.0069 Score=77.60 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=34.2
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
..+||+|||||+||+++|+.|++. |.+|+|+|+.+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lG 573 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPG 573 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccC
Confidence 457999999999999999999998 99999999987543
No 258
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=95.91 E-value=0.007 Score=70.57 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
.||+|||||.+||.+|..||+. |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 3899999999999999999998 999999998763
No 259
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.89 E-value=0.027 Score=65.74 Aligned_cols=54 Identities=22% Similarity=0.163 Sum_probs=36.7
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
|...+.+ |++|+++++|++|..+ +++ .+|+. .+|. .++|+ .||+|+|+. ++.++
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~----~~~-~~v~t-~~g~--~~~a~-~vV~a~G~~-~~~l~ 194 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERD----GEG-WQLLD-ANGE--VIAAS-VVVLANGAQ-AGQLA 194 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEc----CCe-EEEEe-CCCC--EEEcC-EEEEcCCcc-ccccc
Confidence 4445566 9999999999999876 233 34543 2443 47897 599999975 44443
No 260
>KOG2614|consensus
Probab=95.87 E-value=0.008 Score=68.03 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+|||||||.+|++.|..|++. |++|+|+|+-.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e 35 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESRE 35 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecc
Confidence 4899999999999999999999 99999999954
No 261
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.83 E-value=0.0089 Score=68.35 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
=+++|||||.||++||..||+. |.+|.|+||.+..+
T Consensus 125 ~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiG 160 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIG 160 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccc
Confidence 4799999999999999999999 99999999988644
No 262
>KOG0405|consensus
Probab=95.82 E-value=0.0091 Score=65.48 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=33.4
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..+|||+|||+|.+|..+|.|+++. |.||.|+|..-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASH-GAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhc-CceEEEEecCC
Confidence 4579999999999999999999998 99999999874
No 263
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.80 E-value=0.008 Score=70.64 Aligned_cols=32 Identities=31% Similarity=0.560 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+|+|||||++|+++|..|++. |.+|.|+|+.+
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~ 35 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQ 35 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEecCC
Confidence 699999999999999999998 99999999975
No 264
>KOG0685|consensus
Probab=95.78 E-value=0.0095 Score=68.40 Aligned_cols=40 Identities=35% Similarity=0.462 Sum_probs=35.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
.+.-+||||||.||++||.+|-|++...|+|+|+.++.++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 3457999999999999999999886789999999987664
No 265
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.77 E-value=0.0087 Score=69.99 Aligned_cols=41 Identities=27% Similarity=0.439 Sum_probs=32.0
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
|+++|||||+|.|..-|.+|..||.. |+|||.||+.+..++
T Consensus 1 m~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCC
Confidence 46899999999999999999999999 999999999998764
No 266
>PRK12831 putative oxidoreductase; Provisional
Probab=95.76 E-value=0.011 Score=70.79 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=33.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
...||+|||||+||+++|.+|++. |.+|+|+|+.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~ 175 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEP 175 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999987643
No 267
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.73 E-value=0.0087 Score=71.66 Aligned_cols=32 Identities=34% Similarity=0.550 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
++||||||+||+++|.+|++. |++|+|+|++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCc
Confidence 699999999999999999998 99999999975
No 268
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.71 E-value=0.0094 Score=69.78 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=31.9
Q ss_pred EEEECCChhHHHHHHHHhcCCC--CeEEEEccCCCCCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPD--WKILLIEAGGDENE 128 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G--~kVLVLEaG~~~~~ 128 (1049)
++|||||.+|+++|++|.+. + ..|.|+|++++.++
T Consensus 3 i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCc
Confidence 79999999999999999997 5 89999999987664
No 269
>KOG2960|consensus
Probab=95.61 E-value=0.0037 Score=63.73 Aligned_cols=35 Identities=37% Similarity=0.635 Sum_probs=31.8
Q ss_pred CccEEEECCChhHHHHHHHHhc-CCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSE-NPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae-~~G~kVLVLEaG~ 124 (1049)
+-|+||||+|.+|+++|+..+. +|..+|.+||+.-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 4699999999999999999995 7899999999864
No 270
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.53 E-value=0.013 Score=69.20 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
.|+|||||++|+++|..|++.++.+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 5899999999999999999983369999999763
No 271
>PLN02529 lysine-specific histone demethylase 1
Probab=95.48 E-value=0.014 Score=72.72 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=35.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
...||+|||+|++|+++|..|++. |.+|+|+|+.+..++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcC
Confidence 467999999999999999999998 999999999876553
No 272
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.46 E-value=0.021 Score=50.42 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=30.3
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
++|||||..|+-+|..|++. |.+|.|+|+.+.
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccch
Confidence 79999999999999999998 999999999984
No 273
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.40 E-value=0.016 Score=72.74 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=34.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
...||||||||.+|+++|..|++. |.+|+|+|+....++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCC
Confidence 457999999999999999999998 999999999876543
No 274
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.37 E-value=0.017 Score=69.30 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=34.1
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
...||+|||+|++|+.+|..|++. |.+|+|+|+.+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~G 179 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIG 179 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCC
Confidence 457999999999999999999998 99999999987543
No 275
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.36 E-value=0.018 Score=68.78 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=33.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
..+|++|||+|++|+++|..|++. |.+|+|+|+.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 458999999999999999999998 9999999997643
No 276
>KOG2403|consensus
Probab=95.13 E-value=0.034 Score=64.77 Aligned_cols=36 Identities=36% Similarity=0.364 Sum_probs=32.0
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+..||.+|||+|.||+-+|..|+|. |.+|.++-+-.
T Consensus 53 ~~~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl~ 88 (642)
T KOG2403|consen 53 DHTYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKLF 88 (642)
T ss_pred eeeceeEEEeccchhhhhhhhhhhc-CceEEEEeccc
Confidence 4569999999999999999999998 89999887753
No 277
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.11 E-value=0.084 Score=63.34 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 168 ~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 199 (463)
T TIGR02053 168 SLAVIGGGAIGVELAQAFARL-GSEVTILQRSD 199 (463)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 688999999999999999887 88999999875
No 278
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.05 E-value=0.1 Score=62.59 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCC
Confidence 3799999999999999999998 89999999875
No 279
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.05 E-value=0.022 Score=72.86 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
..-+|+|||||+||+++|..|++. |.+|+|+|+.+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~G 575 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAG 575 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccC
Confidence 345899999999999999999998 99999999987543
No 280
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.05 E-value=0.021 Score=73.71 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=33.7
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
..+|+|||||+||+++|..|++. |.+|+|+|+.+...
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~G 342 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLG 342 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCC
Confidence 46899999999999999999998 99999999987544
No 281
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.99 E-value=0.11 Score=62.26 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=39.8
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEE-eCCeEEEEEcCeEEEEcCCCcchHHH--HHhCCC
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL-RDGRKHIIRAKKEIISSAGAINSPQL--LMVSGI 364 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~-~~g~~~~v~A~k~VILAAGa~~Tp~L--Ll~SGI 364 (1049)
..++.|++|++++.|+++.-+ ++. ..|.+. .+|+..++.++ .||+|+|......+ |..+|+
T Consensus 222 ~l~~~gV~i~~~~~v~~i~~~----~~~-~~v~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~l~l~~~g~ 285 (466)
T PRK07818 222 QYKKLGVKILTGTKVESIDDN----GSK-VTVTVSKKDGKAQELEAD-KVLQAIGFAPRVEGYGLEKTGV 285 (466)
T ss_pred HHHHCCCEEEECCEEEEEEEe----CCe-EEEEEEecCCCeEEEEeC-EEEECcCcccCCCCCCchhcCc
Confidence 345679999999999999654 222 234443 25655678997 59999996554443 344444
No 282
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.96 E-value=0.027 Score=70.58 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=33.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
...+|+|||||+||+++|..|++. |.+|+|+|+.+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~G 363 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIG 363 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 346999999999999999999998 99999999986543
No 283
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.95 E-value=0.026 Score=67.63 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=33.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
...+|+|||||++|+.+|..|++. |.+|+|+|+.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCC
Confidence 347999999999999999999998 999999999864
No 284
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.93 E-value=0.025 Score=73.70 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=33.8
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
..+|+|||||+||+++|..|++. |.+|+|+|+++...
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCc
Confidence 47999999999999999999999 99999999987543
No 285
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.84 E-value=0.03 Score=71.31 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=32.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
...||+|||||+||+++|..|++. |.+|+|+|+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 357999999999999999999998 999999999654
No 286
>KOG3855|consensus
Probab=94.83 E-value=0.027 Score=63.44 Aligned_cols=37 Identities=41% Similarity=0.815 Sum_probs=32.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCC---CCeEEEEccCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENP---DWKILLIEAGGD 125 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~---G~kVLVLEaG~~ 125 (1049)
+.|||||||||+.|.++|..|..+| .+||+|+|.+..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 4799999999999999999998754 469999999963
No 287
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.82 E-value=0.038 Score=66.06 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhc-CCCCeEEEEccCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSE-NPDWKILLIEAGGDE 126 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae-~~G~kVLVLEaG~~~ 126 (1049)
...|+|||||+||+.+|..|++ ..|.+|.|+|+-+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 4689999999999999999986 248999999998743
No 288
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=94.69 E-value=0.027 Score=71.72 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhcC-CCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~ 124 (1049)
+|+|||||+||+++|..|++. +|.+|+|+|+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 699999999999999999985 489999999976
No 289
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.46 E-value=0.15 Score=61.39 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=35.5
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcch
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.++.|++|++++.|+++..+. ++++..+.. .+|+..++.++ .||+|+|.-..
T Consensus 231 l~~~gI~i~~~~~v~~i~~~~---~~~~~~~~~-~~g~~~~i~~D-~vi~a~G~~p~ 282 (472)
T PRK05976 231 LKKLGVRVVTGAKVLGLTLKK---DGGVLIVAE-HNGEEKTLEAD-KVLVSVGRRPN 282 (472)
T ss_pred HHhcCCEEEeCcEEEEEEEec---CCCEEEEEE-eCCceEEEEeC-EEEEeeCCccC
Confidence 346689999999999997521 123433332 45655678897 59999997543
No 290
>PLN03000 amine oxidase
Probab=94.40 E-value=0.043 Score=69.03 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=35.0
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
...|++|||||.+|+.+|..|++. |.+|+|+|+.+...+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCC
Confidence 357999999999999999999998 999999999887654
No 291
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.34 E-value=0.22 Score=59.70 Aligned_cols=55 Identities=9% Similarity=0.166 Sum_probs=37.3
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHH
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQL 358 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~L 358 (1049)
..++.|++|++++.|++|..+ ++.+ .|....+++..++.++ .||+|+|.-....+
T Consensus 222 ~l~~~gV~i~~~~~V~~i~~~----~~~v-~v~~~~gg~~~~i~~D-~vi~a~G~~p~~~~ 276 (462)
T PRK06416 222 ALKKRGIKIKTGAKAKKVEQT----DDGV-TVTLEDGGKEETLEAD-YVLVAVGRRPNTEN 276 (462)
T ss_pred HHHHcCCEEEeCCEEEEEEEe----CCEE-EEEEEeCCeeEEEEeC-EEEEeeCCccCCCC
Confidence 345668999999999999765 2222 2444344555678897 59999997544443
No 292
>PRK06370 mercuric reductase; Validated
Probab=94.30 E-value=0.22 Score=59.80 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~ 204 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGP 204 (463)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 578888888888888888887 88888888875
No 293
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.24 E-value=0.049 Score=68.04 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
...+|+|||+|++|+++|..|++. |.+|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 346999999999999999999998 9999999998754
No 294
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.16 E-value=0.41 Score=58.31 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=45.3
Q ss_pred cCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHhC
Q psy4102 301 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVS 362 (1049)
Q Consensus 301 ~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~S 362 (1049)
..|++|++++.++++.-+ ++++++|.+.. +++..++.++ .|++|.|....+.+|..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~----~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGD----GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcC----CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 468999999999999754 46888888864 4666689997 699999988777777654
No 295
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=94.15 E-value=0.063 Score=68.00 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=31.9
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
....|+|||+|+||+++|+.|++. |.+|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccc
Confidence 346899999999999999999998 99999999864
No 296
>PLN02976 amine oxidase
Probab=94.12 E-value=0.052 Score=70.73 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=34.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
..+|++|||+|++|+.+|.+|++. |.+|+|||+.+..++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCC
Confidence 348999999999999999999998 999999999765543
No 297
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.04 E-value=0.066 Score=61.76 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=32.8
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
..+++|||+|.+|+.+|..|++. |.+|+|+|+.+..
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence 35899999999999999999998 9999999998753
No 298
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.94 E-value=0.37 Score=57.43 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=40.6
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
.++.|++|+++++|++|..+ +++.++.. ++. ++.++ .||+|+|...+..+|..+|+
T Consensus 201 l~~~gI~v~~~~~v~~i~~~-----~~~~~v~~--~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 201 LRENGVELHLNEFVKSLIGE-----DKVEGVVT--DKG--EYEAD-VVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHCCCEEEcCCEEEEEecC-----CcEEEEEe--CCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence 34568999999999998432 34555543 333 48887 59999998777778888887
No 299
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.90 E-value=0.061 Score=64.51 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=33.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
...+|+|||+|++|+.+|..|++. |.+|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 457999999999999999999998 9999999998753
No 300
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.85 E-value=0.39 Score=57.51 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=34.0
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcch
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINS 355 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~T 355 (1049)
.++.|++|++++.|++|..+ +.. +.+..+|+..++.++ .||+|+|.-..
T Consensus 221 L~~~GI~i~~~~~V~~i~~~----~~~---v~~~~~g~~~~i~~D-~vivA~G~~p~ 269 (458)
T PRK06912 221 LENDGVKIFTGAALKGLNSY----KKQ---ALFEYEGSIQEVNAE-FVLVSVGRKPR 269 (458)
T ss_pred HHHCCCEEEECCEEEEEEEc----CCE---EEEEECCceEEEEeC-EEEEecCCccC
Confidence 34568999999999998654 222 334345555578897 59999996433
No 301
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.83 E-value=0.61 Score=54.31 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=41.3
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCC
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIG 365 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIG 365 (1049)
.++.|+++++++.|+++..+ ++. ..|.+ .+|+ ++.++ .||+|+|.-..+.++..+|+.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~----~~~-~~v~~-~~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKT----DSG-IRATL-DSGR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHhCCCEEEECCeEEEEEcc----CCE-EEEEE-cCCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 34568999999999998755 222 23443 3454 58887 599999987777888888873
No 302
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.77 E-value=0.59 Score=56.87 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=43.1
Q ss_pred cCCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHh
Q psy4102 301 RKNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMV 361 (1049)
Q Consensus 301 ~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~ 361 (1049)
+.|++|++++.|+++.-+ ++++++|.+.. +++..++.++ .||+|.|..-+..+|..
T Consensus 400 ~~gV~i~~~~~v~~i~~~----~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD----GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCCEEEECCeeEEEEcC----CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 358999999999998644 46788888764 3555678997 69999998777777653
No 303
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.69 E-value=0.59 Score=55.83 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+++..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~ 305 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRL-GAEVHCLYRRT 305 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 699999999999999999998 88999999874
No 304
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.66 E-value=0.071 Score=63.04 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
.-|.|||||+||+.+|.+|+...|.+|.|+|+.+.+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4699999999999999987653489999999998654
No 305
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.58 E-value=0.073 Score=64.15 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=32.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
..+++|||+|++|+.+|..|++. |.+|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 36999999999999999999998 999999999863
No 306
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.51 E-value=0.33 Score=58.26 Aligned_cols=53 Identities=8% Similarity=0.146 Sum_probs=34.9
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEE--eCCeEEEEEcCeEEEEcCCCcchHH
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL--RDGRKHIIRAKKEIISSAGAINSPQ 357 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~--~~g~~~~v~A~k~VILAAGa~~Tp~ 357 (1049)
.++.|++|++++.|++|.-+ ++.+ .+.+. .+|+...+.++ .||+|+|..-...
T Consensus 225 l~~~gV~i~~~~~V~~i~~~----~~~v-~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~ 279 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATAG----ADGV-SLTLEPAAGGAAETLQAD-YVLVAIGRRPYTQ 279 (466)
T ss_pred HHhcCCEEEECcEEEEEEEc----CCeE-EEEEEEcCCCceeEEEeC-EEEEccCCccccc
Confidence 34668999999999999754 1222 23332 23445578897 5999999754444
No 307
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.40 E-value=0.52 Score=60.54 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=43.9
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
..++.|++|++++.|++|.-++ .+....|.+. +|+ .+.++ .||+|+|.-.+..|+..+|+
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~---~~~~~~v~~~-dG~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEG---VEARKTMRFA-DGS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecC---CCceEEEEEC-CCC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 3456789999999999997541 2345556553 454 58887 69999998777777777876
No 308
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.35 E-value=0.08 Score=66.09 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=33.6
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
..+|+|||+|++|+++|..|++. |.+|+|+|+.+...
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~G 346 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIG 346 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCC
Confidence 46899999999999999999998 99999999987543
No 309
>KOG1276|consensus
Probab=93.11 E-value=0.11 Score=59.08 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=33.0
Q ss_pred CccEEEECCChhHHHHHHHHhcC-CCCeEEEEccCCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGGDENE 128 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~~~~~ 128 (1049)
.-+++|||||.+|+++|+.|+.. +...|.|.|++++..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 35899999999999999999996 3456788999987654
No 310
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.91 E-value=0.11 Score=64.12 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=32.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
.-+|+|||+|++|+++|..|++. |.+|+|+|+.+...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~G 173 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLG 173 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 45899999999999999999998 89999999987543
No 311
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.70 E-value=0.71 Score=59.09 Aligned_cols=57 Identities=26% Similarity=0.348 Sum_probs=42.7
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
.++.|++|++++.+++|.-+ +++.+|.+. +|+ ++.++ .||+|+|.-....|+..+|+
T Consensus 192 l~~~GV~v~~~~~v~~i~~~-----~~~~~v~~~-dG~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGA-----TKADRIRFK-DGS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHcCCEEEeCCceEEEEcC-----CceEEEEEC-CCC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 35668999999999998643 456777764 454 58887 59999997767777777776
No 312
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.55 E-value=0.8 Score=54.30 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|.+|+-+|..|++. |.+|.++++++
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 170 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRER-GKNVTLIHRSE 170 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCc
Confidence 699999999999999999987 89999999875
No 313
>KOG1439|consensus
Probab=92.49 E-value=0.08 Score=59.67 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=37.4
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
|+++|||||+|.|..=|+++..|+.+ |.+||.++|.+..+.
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~ 41 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGG 41 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCc
Confidence 45679999999999999999999999 999999999987664
No 314
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.35 E-value=0.57 Score=56.40 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=36.8
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-CCeEEEEEcCeEEEEcCCCcchHH
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQ 357 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-~g~~~~v~A~k~VILAAGa~~Tp~ 357 (1049)
.++.|++|++++.|++|..+ ++.+ .|.+.. +|+..++.++ .||+|+|......
T Consensus 234 l~~~gi~i~~~~~v~~i~~~----~~~v-~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~ 287 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTG----GKGV-SVAYTDADGEAQTLEVD-KLIVSIGRVPNTD 287 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEc----CCEE-EEEEEeCCCceeEEEcC-EEEEccCCccCCC
Confidence 34568999999999999755 2332 344443 3555678897 5999999765544
No 315
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.28 E-value=1.4 Score=48.97 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCcEEecCceEEEEEeccCCCCCeEEEEEEEe--CCeEEEEEcCeEEEEcCCCcchHHHHHhC
Q psy4102 302 KNLHIAMETQALRLLFDKSGPVPKAVGIEILR--DGRKHIIRAKKEIISSAGAINSPQLLMVS 362 (1049)
Q Consensus 302 ~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~--~g~~~~v~A~k~VILAAGa~~Tp~LLl~S 362 (1049)
.|+++++++.++++..+ +++.+|++.. +++..++.++ .||+|+|.-....+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~-----~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD-----NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc-----CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 48899999999998644 3677777653 4556788997 699999976666676655
No 316
>PRK12831 putative oxidoreductase; Provisional
Probab=92.23 E-value=1.2 Score=53.43 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.|+|||+|..|+-+|..|++. |.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRL-GAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCEEEEEeecC
Confidence 699999999999999999998 88899998764
No 317
>PRK13984 putative oxidoreductase; Provisional
Probab=92.18 E-value=0.16 Score=63.04 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=33.6
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
...+++|||+|++|+.+|..|++. |.+|+|+|+.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 456899999999999999999998 9999999998754
No 318
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.18 E-value=0.43 Score=55.12 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCcccccccccccCCCCccchhHHchHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEE
Q psy4102 250 AAAFVKAGEELGYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGI 329 (1049)
Q Consensus 250 ~~~~~~a~~~~G~~~~d~~~~~~~G~~~~~~~~~~g~r~s~~~~~L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV 329 (1049)
.+.+++.++++|++...-.. |.. +|.+ .+.++....|...+++.|++|+++++|++| + ++. .+|
T Consensus 56 ~~d~~~fF~~~Gi~~~~e~~----grv-fP~S----~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~----~~~-~~v 119 (376)
T TIGR03862 56 AVALQDWARGLGIETFVGSS----GRV-FPVE----MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q----GGT-LRF 119 (376)
T ss_pred HHHHHHHHHHCCCceEECCC----CEE-CCCC----CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e----CCc-EEE
Confidence 35567777889997632211 221 1111 234455556667788899999999999998 4 122 345
Q ss_pred EEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCCCCccccccCCCCccccCc
Q psy4102 330 EILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLS 382 (1049)
Q Consensus 330 ~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGIGp~~~L~~~gI~v~~dlp 382 (1049)
.+..++ ..++|++ ||||+|+...|++- -+|-| -...+++|+.++.-.|
T Consensus 120 ~~~~~~--~~~~a~~-vIlAtGG~s~p~~G-s~g~g-y~la~~lGh~i~~~~P 167 (376)
T TIGR03862 120 ETPDGQ--STIEADA-VVLALGGASWSQLG-SDGAW-QQVLDQRGVSVAPFAP 167 (376)
T ss_pred EECCCc--eEEecCE-EEEcCCCccccccC-CCcHH-HHHHHHCCCcccCCcC
Confidence 542222 2588975 99999998888751 12222 1334456655554333
No 319
>PTZ00058 glutathione reductase; Provisional
Probab=91.99 E-value=0.54 Score=57.57 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=36.6
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
..++.|++|++++.|++|.-++ ++.+. +.. .++. .++.++ .||+|+|.--....|-+.++
T Consensus 287 ~L~~~GV~i~~~~~V~~I~~~~---~~~v~-v~~-~~~~-~~i~aD-~VlvA~Gr~Pn~~~L~l~~~ 346 (561)
T PTZ00058 287 DMKKNNINIITHANVEEIEKVK---EKNLT-IYL-SDGR-KYEHFD-YVIYCVGRSPNTEDLNLKAL 346 (561)
T ss_pred HHHHCCCEEEeCCEEEEEEecC---CCcEE-EEE-CCCC-EEEECC-EEEECcCCCCCccccCcccc
Confidence 3456789999999999997541 22221 222 2322 368897 59999996555444443433
No 320
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.70 E-value=0.19 Score=58.97 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhcC-CCCeEEEEccCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGGDE 126 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~~~ 126 (1049)
.+|||||||+||+.+|..|.+. ...+|+|+|+.+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 4799999999999999999986 22489999988643
No 321
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.63 E-value=0.16 Score=60.64 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhcC-CCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~ 124 (1049)
.+||||||.||+.+|.+|++. ++.+|+|+|+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 589999999999999999985 346999999986
No 322
>PRK10262 thioredoxin reductase; Provisional
Probab=91.60 E-value=2.1 Score=48.53 Aligned_cols=59 Identities=7% Similarity=0.088 Sum_probs=41.9
Q ss_pred hcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeC---CeEEEEEcCeEEEEcCCCcchHHHHHhCCC
Q psy4102 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD---GRKHIIRAKKEIISSAGAINSPQLLMVSGI 364 (1049)
Q Consensus 300 ~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~---g~~~~v~A~k~VILAAGa~~Tp~LLl~SGI 364 (1049)
++.|+++++++.++++.-+ ++++.+|++... +...++.++ .||+|.|.-....++ .+++
T Consensus 196 ~~~gV~i~~~~~v~~v~~~----~~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGD----QMGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred cCCCeEEEeCCEEEEEEcC----CccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh-hccc
Confidence 4668999999999998644 346778887642 345578997 599999976665544 3444
No 323
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.75 E-value=0.31 Score=54.46 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=34.6
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
.|||||+|.|..=|+++..|+-+ |.+||.|++.+..+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence 69999999999999999999998 99999999998654
No 324
>KOG2755|consensus
Probab=90.67 E-value=0.17 Score=53.81 Aligned_cols=33 Identities=45% Similarity=0.710 Sum_probs=29.9
Q ss_pred EEEECCChhHHHHHHHHhc-CCCCeEEEEccCCC
Q psy4102 93 FIVIGAGSAGAVVANRLSE-NPDWKILLIEAGGD 125 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae-~~G~kVLVLEaG~~ 125 (1049)
|||||||+||.++|..||. .|..+||+|-+.+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 8999999999999999998 57889999998863
No 325
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=90.49 E-value=0.29 Score=58.01 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=31.8
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
...++||||||.||+.+|.+|... +.+|+|||+.+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 346899999999999999999765 7899999987653
No 326
>KOG4405|consensus
Probab=90.13 E-value=0.32 Score=54.80 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=35.9
Q ss_pred cCCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 87 LLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 87 ~~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
+.++||+||||.|..=+++|...++. |.+||=|+..++.+
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG 44 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence 46789999999999999999999988 99999999987654
No 327
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=90.05 E-value=1.1 Score=53.92 Aligned_cols=57 Identities=7% Similarity=-0.013 Sum_probs=37.4
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
...++.|++|++++.+++|... ++. ..|++..++...++.++ .||+|.|-.....+|
T Consensus 228 ~~L~~~gV~i~~~~~v~~v~~~----~~~-~~v~~~~~~~~~~i~~D-~vl~a~G~~pn~~~l 284 (484)
T TIGR01438 228 EHMEEHGVKFKRQFVPIKVEQI----EAK-VKVTFTDSTNGIEEEYD-TVLLAIGRDACTRKL 284 (484)
T ss_pred HHHHHcCCEEEeCceEEEEEEc----CCe-EEEEEecCCcceEEEeC-EEEEEecCCcCCCcC
Confidence 3445679999999999998754 222 23444332222468897 599999976665554
No 328
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=90.00 E-value=1.5 Score=53.00 Aligned_cols=55 Identities=9% Similarity=0.213 Sum_probs=36.9
Q ss_pred HhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHH
Q psy4102 297 PIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLL 359 (1049)
Q Consensus 297 ~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LL 359 (1049)
...++.|++|++++.|++|..++ + ....|.+ .+++ ++.++ .||+|+|-.....+|
T Consensus 239 ~~L~~~GI~i~~~~~v~~i~~~~---~-~~~~v~~-~~g~--~i~~D-~vl~a~G~~Pn~~~l 293 (486)
T TIGR01423 239 KQLRANGINIMTNENPAKVTLNA---D-GSKHVTF-ESGK--TLDVD-VVMMAIGRVPRTQTL 293 (486)
T ss_pred HHHHHcCCEEEcCCEEEEEEEcC---C-ceEEEEE-cCCC--EEEcC-EEEEeeCCCcCcccC
Confidence 34456789999999999997541 2 2234444 3443 58897 599999976555543
No 329
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=89.65 E-value=0.36 Score=55.82 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHhc--CCCCeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSE--NPDWKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae--~~G~kVLVLEaG~~ 125 (1049)
.+||||||.||+.+|.+|.+ .++.+|+|+|+.+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 38999999999999999964 34789999998865
No 330
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=88.98 E-value=0.42 Score=55.62 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHhc-CCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSE-NPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae-~~G~kVLVLEaG~ 124 (1049)
.|+||||+|.||+.+|.+|.+ .+..+|+||++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 489999999999999999987 4467899999875
No 331
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=88.97 E-value=0.3 Score=53.67 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||+|.||+-+|+++|+. |.+|.|-|--+
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp 36 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKR-GVPVILYEMRP 36 (439)
T ss_pred ceEEEcccccccHHHHHHHHc-CCcEEEEEccc
Confidence 489999999999999999999 99999999665
No 332
>KOG1800|consensus
Probab=88.79 E-value=0.52 Score=52.98 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHhc-CCCCeEEEEccCCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSE-NPDWKILLIEAGGDEN 127 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae-~~G~kVLVLEaG~~~~ 127 (1049)
.-|+|||||+||.-+|.+|.+ .++.+|-|.|+-+.+.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 379999999999999999988 4689999999988544
No 333
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=88.08 E-value=0.49 Score=56.15 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
-.|-|||||+||+.+|..|+.. |++|++.|+-+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCc
Confidence 5899999999999999999999 99999999987544
No 334
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=87.89 E-value=3.8 Score=49.11 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |. +|.++++.+
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRG 307 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 699999999999999999987 65 899998753
No 335
>KOG3851|consensus
Probab=87.81 E-value=0.45 Score=52.11 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=31.6
Q ss_pred CCCccEEEECCChhHHHHHHHHhcC-CCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~-~G~kVLVLEaG~ 124 (1049)
.++|.++|||||.+|+.+|.++..+ +.-+|.+||-..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4679999999999999999999984 345899999664
No 336
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=86.86 E-value=6.9 Score=51.57 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCC-CeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPD-WKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G-~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. | ..|.|+|..+
T Consensus 319 ~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~~ 351 (985)
T TIGR01372 319 RIVVATNNDSAYRAAADLLAA-GIAVVAIIDARA 351 (985)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCceEEEEccCc
Confidence 689999999999999999998 6 5689998764
No 337
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=85.84 E-value=0.83 Score=45.48 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
++|+|+|..|+..|.+|++. |.+|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 58999999999999999996 99999999986
No 338
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=85.07 E-value=0.89 Score=53.13 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
-+++|||+|.+|+-+|..|++. |.+|.++|+.+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEccccc
Confidence 5999999999999999999998 9999999999743
No 339
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=84.08 E-value=1.1 Score=48.25 Aligned_cols=32 Identities=41% Similarity=0.674 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+||||+|-.|..+|..|++. |..|+++|+-+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence 589999999999999999998 99999999976
No 340
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.31 E-value=1.3 Score=44.63 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|+|||..|.++|..|+++ |.+|.|..+-+
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 68999999999999999999 89999999864
No 341
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=81.92 E-value=1.5 Score=51.47 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~ 177 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQR-RCKVTVIELAA 177 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 699999999999999999998 99999999986
No 342
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=81.32 E-value=3.1 Score=47.71 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCC-CCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENP-DWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~-G~kVLVLEaG~ 124 (1049)
....|+|||||-+++-++..|.+.. ..+|.++=|++
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 4568999999999999999999862 35899998886
No 343
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.67 E-value=2.1 Score=44.20 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=27.2
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|.|||+|..|...|..++.. |.+|.++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 68999999999999999998 99999999865
No 344
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=79.13 E-value=2 Score=51.09 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|.+|+-+|..|++. |.+|.|+|+++
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~ 190 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAAS 190 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 699999999999999999987 89999999986
No 345
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.01 E-value=2.5 Score=48.40 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=33.9
Q ss_pred CCCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 88 LRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 88 ~~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.+|+|.||-|+.-+.+|..|.|..+.+++.|||-+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 4569999999999999999999998678999999987
No 346
>KOG0399|consensus
Probab=78.85 E-value=2.1 Score=54.05 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.8
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDEN 127 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~~ 127 (1049)
-.-|-|||+|+||+.+|..|-+. |..|+|-||.++..
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVG 1821 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcC
Confidence 46899999999999999999998 99999999998655
No 347
>KOG0404|consensus
Probab=78.43 E-value=1.9 Score=45.10 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
-.++|||+|+|+-++|..++++ ..|-||.|-+
T Consensus 9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~ 40 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGM 40 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc-ccCceEEeee
Confidence 3699999999999999999998 8999999965
No 348
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=78.13 E-value=2.2 Score=48.08 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|+.|+..|.+|++. |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 599999999999999999998 89999999974
No 349
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.86 E-value=2.7 Score=49.22 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhcCC--CCeEEEEccCCCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENP--DWKILLIEAGGDEN 127 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~--G~kVLVLEaG~~~~ 127 (1049)
++|.|||+|++|..+|.+|.+.+ ..+|.|+|.-+..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 68999999999999999998842 23499999877543
No 350
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=77.67 E-value=2.7 Score=43.88 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=27.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-.|+|||+|.++.-+|..|++. |.+|.++=|.+
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 4699999999999999999999 79999998876
No 351
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=77.43 E-value=1.6 Score=50.67 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=37.3
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHhCC
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSG 363 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~SG 363 (1049)
..++.|++|++++.|+++.-+ +|.+..+++ +|.++ .||-|||.=.+|-+-.++|
T Consensus 218 ~L~~~GV~v~l~~~Vt~v~~~---------~v~~~~g~~--~I~~~-tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 218 ALEKLGVEVLLGTPVTEVTPD---------GVTLKDGEE--EIPAD-TVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHHHCCCEEEcCCceEEECCC---------cEEEccCCe--eEecC-EEEEcCCCcCChhhhhcCh
Confidence 346789999999999999655 466543333 68996 6999999644444433354
No 352
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=77.41 E-value=2.6 Score=54.32 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhcC---CCCeEEEEccCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSEN---PDWKILLIEAGGDE 126 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~---~G~kVLVLEaG~~~ 126 (1049)
.+||||+|+||+.+|.+|.+. .+.+|+|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 699999999999999999753 35799999998754
No 353
>PRK07846 mycothione reductase; Reviewed
Probab=77.14 E-value=2.6 Score=50.45 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~ 199 (451)
T PRK07846 168 SLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSG 199 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 799999999999999999997 99999999986
No 354
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=77.13 E-value=2.4 Score=54.38 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhcC--CCCeEEEEccCCCC
Q psy4102 93 FIVIGAGSAGAVVANRLSEN--PDWKILLIEAGGDE 126 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~--~G~kVLVLEaG~~~ 126 (1049)
+||||+|+||+.+|.+|.+. .+.+|+|+|+.+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 58999999999999998763 35799999998754
No 355
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=77.11 E-value=2.4 Score=50.95 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|||+++
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~ 207 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFD 207 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCCEEEEecCC
Confidence 699999999999999999998 99999999987
No 356
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=76.18 E-value=2.9 Score=47.31 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|..|+..|.+|+++ |.+|.++.++.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 599999999999999999998 89999999875
No 357
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=76.11 E-value=2.7 Score=50.25 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|||+++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~ 199 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGL-GSETHLVIRHE 199 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 699999999999999999998 99999999986
No 358
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.65 E-value=3.6 Score=38.78 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=27.9
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|||+|.|..|..+|..|.+. +.+|+++|..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 79999999999999999996 88999999875
No 359
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.57 E-value=3 Score=50.32 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|.+|+.+|..|++. |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 699999999999999999988 99999999765
No 360
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=74.93 E-value=2.4 Score=49.43 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhcCCCCeEEEEccCCCCCC
Q psy4102 100 SAGAVVANRLSENPDWKILLIEAGGDENE 128 (1049)
Q Consensus 100 ~aG~~aA~rLae~~G~kVLVLEaG~~~~~ 128 (1049)
.||+++|.+|+++ |.+|+|+||.+..++
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCCCc
Confidence 4899999999999 999999999987664
No 361
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=74.19 E-value=3.3 Score=49.32 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||||..|+-+|..|++. |.+|.|+|+++
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 181 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSD 181 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccc
Confidence 699999999999999999998 99999999986
No 362
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=73.20 E-value=3.6 Score=49.26 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 208 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAAL-GVKVTLINTRD 208 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 599999999999999999998 99999999986
No 363
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=73.09 E-value=4.5 Score=48.09 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDE 126 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~~ 126 (1049)
-.+|||||..|+-.|.-++.- |.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 389999999999999999998 9999999999853
No 364
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=73.05 E-value=3.8 Score=42.60 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=25.5
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|||.|-.|+++|..||+. |.+|+.+|..+
T Consensus 3 I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 78999999999999999999 99999999875
No 365
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.01 E-value=3.6 Score=49.23 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|.|||.|.+|+++|..|++. |.+|.+.|+..
T Consensus 3 v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~ 33 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQ-GWEVVVSDRND 33 (459)
T ss_pred EEEEccCHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 79999999999999999998 99999999875
No 366
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=72.72 E-value=3.6 Score=46.18 Aligned_cols=29 Identities=28% Similarity=0.514 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEcc
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEA 122 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEa 122 (1049)
+.|||+|..|+.+|..|+++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 78999999999999999998 899999998
No 367
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.57 E-value=3.7 Score=46.36 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|..|+..|..|+++ |.+|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 589999999999999999998 99999999875
No 368
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=72.15 E-value=3.9 Score=38.03 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
--++|||+|..|..-+..|.+. |.+|.|+...
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 4699999999999999999998 8999999865
No 369
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=71.90 E-value=4.1 Score=45.64 Aligned_cols=30 Identities=20% Similarity=0.492 Sum_probs=28.2
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
+.|||+|..|+.+|..|++. |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 78999999999999999998 8999999984
No 370
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=71.65 E-value=4.2 Score=48.67 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~ 202 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRST 202 (452)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCcEEEEEccC
Confidence 699999999999999999998 89999999986
No 371
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=71.51 E-value=4.2 Score=48.74 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 202 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRL-GVKVTVFERGD 202 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 699999999999999999998 89999999986
No 372
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=71.39 E-value=4.9 Score=42.42 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEcc
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEa 122 (1049)
--++|||||-.|...|..|.+. |.+|.|+++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY-GAHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEcC
Confidence 3699999999999999999998 899999975
No 373
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.77 E-value=4.5 Score=48.25 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|.+|+.+|..|++. |++|.+.|+..
T Consensus 7 ~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 7 KVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 589999999999999999998 99999999864
No 374
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=70.53 E-value=4.5 Score=48.26 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~ 199 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGE 199 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCC
Confidence 589999999999999999988 89999999986
No 375
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=70.26 E-value=5.6 Score=40.16 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=27.3
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEc
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIE 121 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLE 121 (1049)
--++|||||..|.--|..|.+. |.+|.|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 3699999999999999999998 99999994
No 376
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=69.53 E-value=4.9 Score=49.46 Aligned_cols=32 Identities=34% Similarity=0.308 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||||..|+-+|..|++. |.+|.++++++
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~ 176 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREP 176 (555)
T ss_pred EEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCC
Confidence 699999999999999999987 89999999986
No 377
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=69.49 E-value=5.7 Score=38.88 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCe-EEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWK-ILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~k-VLVLEaG~ 124 (1049)
--++|||+|.+|-.++..|++. |.+ |.|+-|-.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~ 46 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTP 46 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSH
T ss_pred CEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 4699999999999999999998 654 99998753
No 378
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=69.30 E-value=5 Score=50.12 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
.++|||+|..|+-+|..|++. |.+|.|||+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCc
Confidence 699999999999999999998 899999999873
No 379
>PLN02507 glutathione reductase
Probab=68.66 E-value=5.2 Score=48.51 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecC
Confidence 699999999999999999998 89999999986
No 380
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.62 E-value=5.5 Score=44.46 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||+|..|..+|..|+++ |.+|.++++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 489999999999999999998 89999999764
No 381
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=68.38 E-value=5.5 Score=47.83 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.++|+++
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 210 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRD 210 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCC
Confidence 589999999999999999998 99999999986
No 382
>PRK06116 glutathione reductase; Validated
Probab=68.14 E-value=5.5 Score=47.57 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.++++++
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~ 200 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGD 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCC
Confidence 699999999999999999998 89999999986
No 383
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.37 E-value=5.7 Score=44.35 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|||+|..|..+|..|+++ |.+|.++++.+
T Consensus 4 V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 78999999999999999998 99999999875
No 384
>PLN02546 glutathione reductase
Probab=66.46 E-value=6.1 Score=48.47 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~ 285 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQK 285 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEEecc
Confidence 699999999999999999987 89999999986
No 385
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=66.06 E-value=6.6 Score=46.75 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|+|+++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 699999999999999999998 99999999986
No 386
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.01 E-value=6.7 Score=44.46 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|||+|..|...|..++.. |.+|.+.|..+
T Consensus 10 VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 88999999999999999998 99999999865
No 387
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=65.99 E-value=6.5 Score=46.57 Aligned_cols=33 Identities=33% Similarity=0.683 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhcC-------------CCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSEN-------------PDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~-------------~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. ++.+|.|+|+++
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 220 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGS 220 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCC
Confidence 699999999999999999861 378999999986
No 388
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=65.94 E-value=7.2 Score=41.23 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
-++|||||..|..-|..|.+. |.+|.|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKA-GAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 699999999999999999998 8999999753
No 389
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=65.63 E-value=7.3 Score=40.99 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=30.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
..-|+|||+|..|+.+|..|+.. |. +|.|++...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 35799999999999999999998 77 699999863
No 390
>PRK13748 putative mercuric reductase; Provisional
Probab=65.63 E-value=6.4 Score=48.47 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|||+..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 699999999999999999998 99999999853
No 391
>PRK04148 hypothetical protein; Provisional
Probab=65.49 E-value=5.5 Score=38.93 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+++||.| .|..+|..|++. |.+|+.+|..+
T Consensus 19 kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKES-GFDVIVIDINE 49 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence 59999999 888889999998 99999999876
No 392
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.42 E-value=6.3 Score=43.99 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||+|..|...|..++.+ |.+|.++|+.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 488999999999999999998 99999999876
No 393
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=64.68 E-value=7.4 Score=42.85 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHhcCCC-CeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPD-WKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G-~kVLVLEaG~ 124 (1049)
..-|+|||.|..|+.+|..|+.. | .++.|+|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence 45799999999999999999998 6 6899999764
No 394
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=64.61 E-value=7.1 Score=44.43 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|||+|..|+..|..|+++ |.+|.++.+..
T Consensus 3 I~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 78999999999999999998 89999998843
No 395
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=64.09 E-value=7.1 Score=44.69 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|..|+..|.+|+++ |.+|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 489999999999999999998 89999999853
No 396
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=63.89 E-value=7.6 Score=44.95 Aligned_cols=33 Identities=36% Similarity=0.654 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+++|||+|..|.++|..||++.-.+|++.+|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 699999999999999999998338999999974
No 397
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=63.85 E-value=7.8 Score=44.35 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
..-|+|||+|..|+.+|..|+.. |. ++.++|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 45799999999999999999998 76 999999864
No 398
>PRK14727 putative mercuric reductase; Provisional
Probab=63.78 E-value=7.3 Score=46.95 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 599999999999999999988 9999999975
No 399
>PRK14694 putative mercuric reductase; Provisional
Probab=63.57 E-value=7.5 Score=46.70 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+|.|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 589999999999999999998 89999999753
No 400
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.33 E-value=7.9 Score=43.29 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||+|..|..+|..|+.+ |.+|.+.++.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 488999999999999999998 99999999864
No 401
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=63.25 E-value=8 Score=44.26 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=30.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
..-|+|||+|..|+.+|..|+.. |. ++.|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 34699999999999999999998 76 899999864
No 402
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=62.94 E-value=7.5 Score=44.73 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCe-EEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWK-ILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~k-VLVLEaG~ 124 (1049)
.++|||+|..|+-+|..|++. |.+ |.|+|+.+
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 589999999999999999887 776 99999864
No 403
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=62.45 E-value=8.4 Score=43.06 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||+|..|...|..|+.. |.+|.++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 388999999999999999998 89999999865
No 404
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=61.75 E-value=8.6 Score=43.37 Aligned_cols=31 Identities=23% Similarity=0.572 Sum_probs=28.5
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|+|+|..|+..|++|++. |..|+++=|.+
T Consensus 3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~ 33 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSR 33 (307)
T ss_pred EEEECCcHHHHHHHHHHHhC-CCeEEEEecHH
Confidence 78999999999999999999 68899998876
No 405
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=61.74 E-value=9.8 Score=40.06 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|+|.|..|..+|.+|.+. |.+|++.++..
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEE-GAKLIVADINE 61 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence 499999999999999999998 99999988653
No 406
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=61.52 E-value=19 Score=38.64 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCC---eEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDW---KILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~---kVLVLEaG~ 124 (1049)
-++|+|+|.+|..+|..|.+. |. +|.|+++-+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 599999999999999999987 65 599999875
No 407
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=61.47 E-value=19 Score=41.65 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=30.3
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCC---eEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDW---KILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~---kVLVLEaG~ 124 (1049)
++.-++|.|+|+||+.+|..|.+. |. +|.++|+-+
T Consensus 198 ~d~kiv~~GAGAAgiaia~~l~~~-g~~~~~i~~~D~~G 235 (432)
T COG0281 198 KDQKIVINGAGAAGIAIADLLVAA-GVKEENIFVVDRKG 235 (432)
T ss_pred cceEEEEeCCcHHHHHHHHHHHHh-CCCcccEEEEecCC
Confidence 456799999999999999999987 54 799999876
No 408
>KOG3923|consensus
Probab=61.30 E-value=8.6 Score=42.29 Aligned_cols=35 Identities=31% Similarity=0.262 Sum_probs=26.9
Q ss_pred CccEEEECCChhHHHHHHHHhc------CCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSE------NPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae------~~G~kVLVLEaG~ 124 (1049)
..+++|||+|..||+.|..+.+ .|..+|.|++--.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 3589999999999999977666 2446788887543
No 409
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=60.88 E-value=9.1 Score=44.43 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+++|||+|.+|..+|..|... |.+|.++++.+
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGL-GATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 4699999999999999999988 88999999864
No 410
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.89 E-value=9.8 Score=43.34 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||+|..|...|.+|+++ |.+|.++.+.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 489999999999999999998 89999999854
No 411
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=59.68 E-value=9.6 Score=42.62 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCe-EEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWK-ILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~k-VLVLEaG~ 124 (1049)
-++|+|+|.+|.++|..|++. |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 589999999999999999998 765 99998764
No 412
>PTZ00052 thioredoxin reductase; Provisional
Probab=59.63 E-value=9 Score=46.45 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
.++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 699999999999999999998 9999999873
No 413
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=58.54 E-value=14 Score=37.79 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=29.0
Q ss_pred CccEEEECCCh-hHHHHHHHHhcCCCCeEEEEccC
Q psy4102 90 AYDFIVIGAGS-AGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 90 ~~DvIVVG~G~-aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
...++|||+|- +|..+|..|.+. |.+|.++.+-
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 45899999996 699999999998 8899999985
No 414
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.22 E-value=10 Score=42.08 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|..|+..|..|+.. |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 489999999999999999998 89999998764
No 415
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=57.71 E-value=12 Score=38.34 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
|+|||+|..|+.+|..|+.. |. ++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 78999999999999999998 76 699999864
No 416
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.34 E-value=11 Score=44.96 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|+|+|..|.++|..|++. |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 389999999999999999998 99999998764
No 417
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=57.29 E-value=12 Score=43.96 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 204 tVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 699999999999999999887 88999999865
No 418
>KOG2495|consensus
Probab=57.25 E-value=5.6 Score=45.79 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=28.5
Q ss_pred ccEEEECCChhHHHHHHHHhc-------------CCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSE-------------NPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae-------------~~G~kVLVLEaG~ 124 (1049)
--+||||||+.|.-.|.+|+. ..-.+|.++||.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence 469999999999999999984 1135899999997
No 419
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=56.72 E-value=17 Score=32.39 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEcc
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEA 122 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEa 122 (1049)
.++|+|+|..|..+|..|.+..+.+|.+.++
T Consensus 25 ~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6999999999999999999974678999988
No 420
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=56.44 E-value=11 Score=42.58 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|..|+..|..|+++ |..|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 489999999999999999998 89999999864
No 421
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.36 E-value=12 Score=42.14 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|..|+..|..|++. |.+|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 489999999999999999997 89999999754
No 422
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=56.21 E-value=11 Score=44.82 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
+|+|||+|.+|+-+|..|++. |.+|.++=|.+.
T Consensus 177 rV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~ 209 (443)
T COG2072 177 RVLVIGAGASAVDIAPELAEV-GASVTLSQRSPP 209 (443)
T ss_pred eEEEECCCccHHHHHHHHHhc-CCeeEEEecCCC
Confidence 799999999999999999999 799999999874
No 423
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=56.20 E-value=15 Score=36.15 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
++|||.|..|+.+|..|+.. |. ++.+++...
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence 78999999999999999998 65 799999775
No 424
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=55.43 E-value=15 Score=37.50 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.4
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.-|+|+|+|.+|.-||.-|..- |.+|.++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 5799999999999999999888 99999999764
No 425
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=55.10 E-value=16 Score=39.74 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=29.4
Q ss_pred CCccEEEECCChhHHHHHHHHhcCC----------CCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENP----------DWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~----------G~kVLVLEaG~ 124 (1049)
....|+|||+|..|+.+|..||+.+ |.++.|+|...
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4578999999999999999999862 33888888653
No 426
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=54.84 E-value=14 Score=35.95 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
-++|||+|..|+.+|..|+.. |. ++.|+|...
T Consensus 4 ~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 4 RVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDI 36 (135)
T ss_dssp EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSB
T ss_pred EEEEECcCHHHHHHHHHHHHh-CCCceeecCCcc
Confidence 489999999999999999998 65 899999775
No 427
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=54.81 E-value=14 Score=41.42 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|||+|..|...|..|+.. |.+|.+.++.+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 88999999999999999998 89999999864
No 428
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=54.79 E-value=14 Score=41.75 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=27.1
Q ss_pred EEEECCChhHHHHHHHHhcCCCC-eEEEEccC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDW-KILLIEAG 123 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG 123 (1049)
+.|||+|..|+.+|..|+.. |. +|+++|.-
T Consensus 4 V~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~ 34 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEK-ELADLVLLDVV 34 (305)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 78999999999999999997 54 89999983
No 429
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=54.77 E-value=14 Score=41.09 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=28.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
-.++|||+|.+|.++|..|++. |. +|.|+.|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 3699999999999999999998 65 899998864
No 430
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=54.15 E-value=11 Score=45.00 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.|+|||+|..|+=+|..|++. +.+|.++.+++
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 599999999999999999998 88999999875
No 431
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=53.42 E-value=30 Score=41.66 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=44.7
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-----------CCeEEEEEcCeEEEEcCCCcch-HHHHHhCCC
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------DGRKHIIRAKKEIISSAGAINS-PQLLMVSGI 364 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-----------~g~~~~v~A~k~VILAAGa~~T-p~LLl~SGI 364 (1049)
.+++.|+++++++.+++|.-+ ++++++|++.+ .|+..++.++ .||+|.|.... ..++...|+
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~----~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGE----NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHHHcCCeEEeccCceEEEcc----CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence 345679999999999999644 57899988642 2445689998 59999995443 346555554
No 432
>PRK08328 hypothetical protein; Provisional
Probab=52.63 E-value=17 Score=39.22 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=28.9
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..-|+|||+|..|+.+|..|+..+=.++.+++...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35699999999999999999998334788887653
No 433
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=52.60 E-value=15 Score=44.92 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
-++|+|+|.+|.++|..|++. |.+|.++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 489999999999999999998 7899999774
No 434
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=51.73 E-value=16 Score=41.17 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCC--CeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPD--WKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G--~kVLVLEaG~ 124 (1049)
.+.|||+|..|+++|..|+.. | ..|.++++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 489999999999999999998 6 5899999864
No 435
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=51.28 E-value=2.4 Score=28.84 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=14.5
Q ss_pred CCCCCccccchhhHHHHHhH
Q psy4102 40 PESRPTNTKTDKVTAAMLGI 59 (1049)
Q Consensus 40 ~~~r~~~~~~~~~~~a~~~~ 59 (1049)
++|| +|||+.++++++..+
T Consensus 2 ~sRR-~fLk~~~a~~a~~~~ 20 (26)
T PF10518_consen 2 LSRR-QFLKGGAAAAAAAAL 20 (26)
T ss_pred CcHH-HHHHHHHHHHHHHHh
Confidence 4567 999998888777654
No 436
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=50.98 E-value=19 Score=37.86 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=30.2
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
+.-|+|||.|..|+.+|..|+.. |. ++.+++...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 45799999999999999999998 65 899999864
No 437
>KOG2018|consensus
Probab=50.93 E-value=16 Score=40.24 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=26.7
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
|||||+|..|+-+|.-|.+.+=.|+.+++=.
T Consensus 77 VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfd 107 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLRSGVQKIRIVDFD 107 (430)
T ss_pred EEEEecCchhHHHHHHHHHhcCceEEEechh
Confidence 8999999999999999999833588888754
No 438
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=50.65 E-value=17 Score=40.58 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
--++|||.|..|..+|.+|... |.+|.+.++..
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3699999999999999999988 88999999864
No 439
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=50.62 E-value=14 Score=40.97 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=30.3
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.-+|+|+|+|.+|.-+|.-+.-- |.+|.+||...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCH
Confidence 35899999999999999988877 89999999874
No 440
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=50.38 E-value=16 Score=43.11 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||.|..|+.+|..|++. |.+|+++++.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 378999999999999999998 99999999864
No 441
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=50.29 E-value=19 Score=38.44 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=27.7
Q ss_pred EEEEC-CChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIG-AGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG-~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.||| +|..|.++|..|++. |.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 78997 799999999999998 89999997764
No 442
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=50.17 E-value=18 Score=40.76 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=27.9
Q ss_pred EEEECCChhHHHHHHHHhcCCC--CeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPD--WKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G--~kVLVLEaG~ 124 (1049)
+.|||+|..|.++|..|++. | ..|.|+++..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~ 35 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINE 35 (306)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence 78999999999999999997 6 4799999865
No 443
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=50.13 E-value=17 Score=44.05 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+-|||+|..|.-.|..|+.+ |.+|.|.|+.+
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 389999999999999999998 99999999875
No 444
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=50.01 E-value=22 Score=38.61 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=30.0
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
...|+|||+|..|+.+|..|+..+=.++.++|...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 46799999999999999999998335888888764
No 445
>PRK08017 oxidoreductase; Provisional
Probab=49.97 E-value=19 Score=38.94 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=28.1
Q ss_pred EEEECC-ChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGA-GSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~-G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
++|+|+ |..|..+|.+|++. |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRR-GYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 899998 99999999999998 89999998754
No 446
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.55 E-value=18 Score=40.86 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|..|..+|.+|+++ |.+|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 589999999999999999998 89999998754
No 447
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=49.49 E-value=19 Score=42.09 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|||.|..|..+|.+|... |.+|+++|..+
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 699999999999999999887 89999999765
No 448
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=49.48 E-value=19 Score=40.25 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=46.7
Q ss_pred hHHhhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHH
Q psy4102 295 LRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 357 (1049)
Q Consensus 295 L~~~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~ 357 (1049)
|....++.|.-++.+-+|.+..+. +++++.|..+ +.....++|+ ++|||+|+|-|--
T Consensus 264 L~~~f~~~Gg~~m~Gd~V~~a~~~----~~~v~~i~tr-n~~diP~~a~-~~VLAsGsffskG 320 (421)
T COG3075 264 LQRQFEQLGGLWMPGDEVKKATCK----GGRVTEIYTR-NHADIPLRAD-FYVLASGSFFSKG 320 (421)
T ss_pred HHHHHHHcCceEecCCceeeeeee----CCeEEEEEec-ccccCCCChh-Heeeecccccccc
Confidence 445567889999999999999988 6899999875 6666789996 6999999987644
No 449
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=49.34 E-value=20 Score=39.94 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|+|+|.++-++|+.|++.+-.+|.|+.|..
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 589999999999999999998335899998753
No 450
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=48.94 E-value=21 Score=39.58 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|+|+|.++.++|..|++.+-.+|.|+.|-.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 599999999999999999998335799998864
No 451
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=48.90 E-value=37 Score=40.77 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=43.6
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-----------------CCeEEEEEcCeEEEEcCCCcch-HHHHH
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------------DGRKHIIRAKKEIISSAGAINS-PQLLM 360 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-----------------~g~~~~v~A~k~VILAAGa~~T-p~LLl 360 (1049)
+.+.|+++++++.+++|..+ +++++++|++.. .|+..++.++ .||+|.|.... ..++.
T Consensus 330 ~~~~GV~~~~~~~~~~i~~~---~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~~~~ 405 (467)
T TIGR01318 330 AREEGVEFLFNVQPVYIECD---EDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPAD-VVIMAFGFQPHAMPWLA 405 (467)
T ss_pred HHhcCCEEEecCCcEEEEEC---CCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECC-EEEECCcCCCCcccccc
Confidence 45679999999999999765 257898887632 1345678998 59999996543 23444
Q ss_pred hCCC
Q psy4102 361 VSGI 364 (1049)
Q Consensus 361 ~SGI 364 (1049)
.+|+
T Consensus 406 ~~gl 409 (467)
T TIGR01318 406 GHGI 409 (467)
T ss_pred ccCc
Confidence 4444
No 452
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=48.64 E-value=18 Score=41.54 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.+.|||+|-.|++.|.-||+. |..|+.+|.-+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 368999999999999999999 99999999865
No 453
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=48.26 E-value=19 Score=43.13 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhcCC-CCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENP-DWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~-G~kVLVLEaG~ 124 (1049)
.+.|||.|..|+++|..||+.+ |.+|+.+|..+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 4899999999999999999972 58899999764
No 454
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=47.80 E-value=19 Score=42.53 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||.|..|+.+|..|++. |.+|.++++.+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence 389999999999999999998 89999999764
No 455
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=47.73 E-value=18 Score=45.88 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||+|..|.-+|..+|.+ |.+|.|+|..+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence 388999999999999999998 99999999875
No 456
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=47.69 E-value=21 Score=39.46 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|+|+|.+|..+|..|++. |.+|.++.|..
T Consensus 119 ~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 119 RVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred EEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 589999999999999999998 78999998753
No 457
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=47.65 E-value=45 Score=36.90 Aligned_cols=35 Identities=31% Similarity=0.509 Sum_probs=27.4
Q ss_pred CccEEEECCChhHHHHHHHHhcC---CC-------CeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSEN---PD-------WKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~---~G-------~kVLVLEaG~ 124 (1049)
+--+||+|+|.||+.+|..|.+. .| .++.++|+-+
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~G 69 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKG 69 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCC
Confidence 34699999999999999988652 13 3788888776
No 458
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=47.29 E-value=19 Score=42.86 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|||+|..|..+|..|.+. |..|+++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence 489999999999999999998 89999999865
No 459
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=47.00 E-value=24 Score=38.36 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 89 ~~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
....|+|||.|..|+.+|..|+..+=.++.|++...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 346899999999999999999998334899998764
No 460
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=46.87 E-value=19 Score=45.62 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+.|||+|..|.-.|..+|.+ |..|.++|..+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 489999999999999999998 99999999875
No 461
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=46.60 E-value=22 Score=39.52 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCC-CeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPD-WKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G-~kVLVLEaG~ 124 (1049)
.++|+|+|.+|..+|..|++. | .+|.|+.|..
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~ 157 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDL-GVAEITIVNRTV 157 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 689999999999999999988 7 7999998864
No 462
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=46.22 E-value=25 Score=36.63 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=28.1
Q ss_pred ccEEEECC-ChhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 91 YDFIVIGA-GSAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 91 ~DvIVVG~-G~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
-.++|+|+ |..|..+|..|++. |.+|.++.|.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 36999996 99999999999997 7899999765
No 463
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=46.20 E-value=23 Score=41.69 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|+|.|..|..+|.+|... |.+|++.|..+
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 599999999999999999888 88999999865
No 464
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=46.08 E-value=34 Score=37.31 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=26.6
Q ss_pred CccEEEECCChhHHHHHHHHhcC----CC------CeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSEN----PD------WKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~----~G------~kVLVLEaG~ 124 (1049)
+--++|+|+|.||+.+|..|.+. +- .++.++++-+
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 34699999999999999998763 32 4788888875
No 465
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=46.07 E-value=25 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=27.3
Q ss_pred EEEECCChhHHHHHHHHhcCCC---CeEEEE-ccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPD---WKILLI-EAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G---~kVLVL-EaG~ 124 (1049)
+.|||+|-.|..++..|.+. | .+|+++ ++.+
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence 56899999999999999998 7 899976 8765
No 466
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=46.00 E-value=23 Score=39.42 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-.++|||+|.+|-++|..|++.+-.+|.|+.|-.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 3699999999999999999998335799998753
No 467
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=45.78 E-value=26 Score=37.28 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.7
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
..-|+|||+|..|+.+|..|+.. |. ++.++|...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 45799999999999999999998 65 699999764
No 468
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=45.54 E-value=25 Score=37.73 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=29.4
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
..-|+|||.|..|+.+|..|+.. |. ++.|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 45799999999999999999998 65 888888754
No 469
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=45.50 E-value=21 Score=44.04 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-.+||+|.|..|-.+|.+|.++ |.+|+++|+.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~ 450 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR 450 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence 5799999999999999999998 89999999865
No 470
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=45.45 E-value=22 Score=43.11 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=29.3
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+-|||+|..|.-.|..|+.+ |..|.|.|+.+
T Consensus 10 V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~ 40 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQA-GHTVLLYDARA 40 (507)
T ss_pred EEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 88999999999999999998 99999999875
No 471
>PRK06153 hypothetical protein; Provisional
Probab=45.42 E-value=23 Score=40.97 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=30.5
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.--|.|||.|..|+.+|..||+.+-.++.|+|...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 35799999999999999999998556899999764
No 472
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=45.42 E-value=22 Score=35.90 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=26.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|+|-|-.|-.+|.+|... |.+|.|.|..|
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP 56 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGL-GARVTVTEIDP 56 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH
T ss_pred EEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh
Confidence 599999999999999999998 99999999976
No 473
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=45.34 E-value=26 Score=37.47 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=27.2
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEc
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIE 121 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLE 121 (1049)
.--++|||||..++-=+..|.+. |.+|.|+=
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-GCYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 34699999999999988889887 89999995
No 474
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=45.27 E-value=23 Score=42.72 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-|+|||+|..|+-+|..+.+..+.+|.++|..+
T Consensus 285 ~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 285 KVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 599999999999998888777456899999876
No 475
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.70 E-value=25 Score=41.96 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|+|.|.+|+.+|..|++. |.+|.+.|..+
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 489999999999999999998 89999998765
No 476
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.65 E-value=17 Score=40.79 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
-||.|||||.+|.-+|.-||-- -.-|.|||=.+.
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~e 388 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPE 388 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhh-hheeeeeecchh
Confidence 4899999999999999999965 458999997764
No 477
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=44.62 E-value=25 Score=38.73 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.2
Q ss_pred cEEEECCC---hhHHHHHHHHhcCCCCeEEEEccC
Q psy4102 92 DFIVIGAG---SAGAVVANRLSENPDWKILLIEAG 123 (1049)
Q Consensus 92 DvIVVG~G---~aG~~aA~rLae~~G~kVLVLEaG 123 (1049)
=+||.|++ ..|..+|.+|+++ |.+|++..+.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCc
Confidence 38999987 6999999999998 9999998764
No 478
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=44.62 E-value=23 Score=41.72 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=27.3
Q ss_pred EEEECCChhHHHHHHHHhcCCCC------eEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDW------KILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~------kVLVLEaG~ 124 (1049)
|+|||+|..||-++..||.. |. ++.|++...
T Consensus 2 VlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDN 38 (435)
T ss_pred EEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCC
Confidence 79999999999999999997 66 888888654
No 479
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=44.33 E-value=23 Score=42.83 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+-|||+|..|...|..|+.+ |.+|.|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 388999999999999999998 99999999864
No 480
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=44.19 E-value=27 Score=37.76 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=27.5
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|+|||+|..|+.++..|+..+=.++.|++...
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 78999999999999999998334888888764
No 481
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=44.14 E-value=23 Score=39.32 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=28.3
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+.|||.|..|...|..|++. |.+|.+.++.+
T Consensus 3 I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 78999999999999999998 89999998754
No 482
>PRK07326 short chain dehydrogenase; Provisional
Probab=43.86 E-value=25 Score=37.45 Aligned_cols=32 Identities=16% Similarity=0.301 Sum_probs=27.5
Q ss_pred cEEEECC-ChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGA-GSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~-G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
=++|+|+ |..|..+|.+|++. |.+|+++.+.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAE-GYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCH
Confidence 3788885 88999999999998 89999997754
No 483
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.85 E-value=22 Score=45.55 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCe-EEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWK-ILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~k-VLVLEaG~ 124 (1049)
.|||||+|..|+-+|..|.+. |.+ |.|+++.+
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 699999999999999999988 665 99999875
No 484
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=43.77 E-value=26 Score=43.16 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=30.1
Q ss_pred CccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 90 AYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 90 ~~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
..-|+|||+|+-||.+|..|+..+=.++.+++.+.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 45799999999999999999998334799999875
No 485
>PRK06223 malate dehydrogenase; Reviewed
Probab=43.76 E-value=26 Score=39.42 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
-+.|||+|..|..+|..++.. +. .|.|+|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 589999999999999999987 54 999999843
No 486
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=43.61 E-value=23 Score=39.83 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=27.3
Q ss_pred EEEECCChhHHHHHHHHhcCCCC-eEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDW-KILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~ 124 (1049)
+.|||+|..|..+|..|+.. +. .|.|+|..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence 47999999999999999986 55 999999874
No 487
>PRK06057 short chain dehydrogenase; Provisional
Probab=43.37 E-value=27 Score=37.83 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=28.5
Q ss_pred cEEEECC-ChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGA-GSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~-G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-|+|+|+ |..|..+|.+|++. |.+|+++.+..
T Consensus 9 ~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~ 41 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAE-GATVVVGDIDP 41 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 4899999 88999999999998 89999998754
No 488
>PRK07831 short chain dehydrogenase; Provisional
Probab=43.26 E-value=26 Score=38.15 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.8
Q ss_pred cEEEECC-C-hhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGA-G-SAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~-G-~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|.|+ | ..|..+|.+|++. |.+|+++++..
T Consensus 19 ~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~ 52 (262)
T PRK07831 19 VVLVTAAAGTGIGSATARRALEE-GARVVISDIHE 52 (262)
T ss_pred EEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 5999997 5 6999999999998 89999988764
No 489
>PRK07774 short chain dehydrogenase; Provisional
Probab=43.23 E-value=27 Score=37.48 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=28.6
Q ss_pred cEEEECC-ChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGA-GSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~-G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-++|.|+ |..|..+|..|++. |.+|+++.+..
T Consensus 8 ~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~ 40 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALARE-GASVVVADINA 40 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4899998 99999999999998 89999998753
No 490
>PLN02494 adenosylhomocysteinase
Probab=42.92 E-value=29 Score=41.31 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|+|.|..|..+|.+|... |.+|+++|..+
T Consensus 256 tVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp 287 (477)
T PLN02494 256 VAVICGYGDVGKGCAAAMKAA-GARVIVTEIDP 287 (477)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 699999999999999999877 89999999875
No 491
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=42.92 E-value=26 Score=34.45 Aligned_cols=32 Identities=13% Similarity=0.390 Sum_probs=26.7
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~~ 125 (1049)
.+|+|+|..+..+|.-++.- |++|.|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCcc
Confidence 58999999999999888888 999999997753
No 492
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=42.64 E-value=44 Score=36.43 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=26.2
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCC-----------eEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDW-----------KILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~-----------kVLVLEaG~ 124 (1049)
--++|+|+|.||+.+|..|.+. +. ++.++|+-+
T Consensus 26 ~riv~~GAGsAg~gia~ll~~~-~~~~Gls~e~A~~~i~~vD~~G 69 (254)
T cd00762 26 HKVLFNGAGAAALGIANLIVXL-XVKEGISKEEACKRIWXVDRKG 69 (254)
T ss_pred cEEEEECcCHHHHHHHHHHHHH-HHhcCCCHHHHhccEEEECCCC
Confidence 4699999999999999999774 22 577777655
No 493
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=42.43 E-value=28 Score=39.02 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
--++|||.|.+|..+|..|... |.+|.+.++-+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 3699999999999999999988 88999998864
No 494
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=42.38 E-value=24 Score=44.87 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
-+-|||+|..|.-.|..++.. |..|.++|..+
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhC-CCcEEEecCCH
Confidence 389999999999999999998 99999999875
No 495
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=42.38 E-value=48 Score=41.75 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=43.8
Q ss_pred hhhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEe-----------------CCeEEEEEcCeEEEEcCCCcch-HHHH
Q psy4102 298 IRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-----------------DGRKHIIRAKKEIISSAGAINS-PQLL 359 (1049)
Q Consensus 298 ~~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~-----------------~g~~~~v~A~k~VILAAGa~~T-p~LL 359 (1049)
.++..|+++++++.+++|+.+ ++++++||++.. .|+..++.++ .||+|.|-... ..+|
T Consensus 515 ~~~~~Gv~~~~~~~~~~i~~~---~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~ 590 (654)
T PRK12769 515 NAREEGANFEFNVQPVALELN---EQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPAD-AVIMAFGFNPHGMPWL 590 (654)
T ss_pred HHHHcCCeEEeccCcEEEEEC---CCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECC-EEEECccCCCCccccc
Confidence 345779999999999999865 357899998742 2345679997 59999995432 2334
Q ss_pred HhCCC
Q psy4102 360 MVSGI 364 (1049)
Q Consensus 360 l~SGI 364 (1049)
...||
T Consensus 591 ~~~gl 595 (654)
T PRK12769 591 ESHGV 595 (654)
T ss_pred cccCC
Confidence 34443
No 496
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=42.35 E-value=31 Score=38.58 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
|+|||+|.-|+.+|..|+..+=.++.+++.+.
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 79999999999999999998334899999875
No 497
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=42.26 E-value=31 Score=39.15 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=29.3
Q ss_pred ccEEEECCChhHHHHHHHHhcCCCC-eEEEEccCCC
Q psy4102 91 YDFIVIGAGSAGAVVANRLSENPDW-KILLIEAGGD 125 (1049)
Q Consensus 91 ~DvIVVG~G~aG~~aA~rLae~~G~-kVLVLEaG~~ 125 (1049)
.-+.|||+|..|..+|..++.. |. +|.|+|.-+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 3589999999999999999987 64 8999998653
No 498
>KOG1336|consensus
Probab=42.17 E-value=28 Score=40.89 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=43.7
Q ss_pred hhcCCcEEecCceEEEEEeccCCCCCeEEEEEEEeCCeEEEEEcCeEEEEcCCCcchHHHHHh
Q psy4102 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMV 361 (1049)
Q Consensus 299 ~~~~nl~I~~~t~V~~Il~d~~~~~~rv~GV~~~~~g~~~~v~A~k~VILAAGa~~Tp~LLl~ 361 (1049)
.++.+++++.+|.+..+..+ .+|+++-|...+ |+ ++.|+ -||+..|+--...++..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~---~~Gev~~V~l~d-g~--~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGN---SDGEVSEVKLKD-GK--TLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHhcCeEEEEecceeecccC---CCCcEEEEEecc-CC--EeccC-eEEEeeccccccccccc
Confidence 36788999999999999876 468898888753 44 68897 59999998766666655
No 499
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=42.02 E-value=30 Score=38.62 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.4
Q ss_pred cEEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 92 DvIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
.++|+|+|.++.++|..|++.+-.+|.|+.|-.
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 589999999999999999987345899999864
No 500
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=41.82 E-value=26 Score=39.41 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhcCCCCeEEEEccCC
Q psy4102 93 FIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124 (1049)
Q Consensus 93 vIVVG~G~aG~~aA~rLae~~G~kVLVLEaG~ 124 (1049)
+-|||+|..|.-.|..+|.. |.+|.+.|...
T Consensus 6 v~ViGaG~MG~gIA~~~A~~-G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALA-GYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhc-CCceEEEeCCH
Confidence 78999999999999999994 89999999874
Done!