RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4102
(1049 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 508 bits (1310), Expect = e-169
Identities = 111/385 (28%), Positives = 181/385 (47%), Gaps = 30/385 (7%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEI--SDIPSLAGYLQL-SELDWK 147
+D++V+GAG+AG VVA RL+E+PD +L++EAG + + ++ P LA L S DW
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62
Query: 148 YKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERL-GNPGW 206
Y T G +PRG++LGGSS ++ M+ +RG+ D+D++ + G+ GW
Sbjct: 63 YTTTA-------QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGW 115
Query: 207 GYKDVLPYFKKSEDN-------RNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEE 259
+ ++ + +K+E H G +++ + +PL + +E
Sbjct: 116 NWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQE 175
Query: 260 LGYE---NRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLL 316
E N D+ G + ++ G R S+S A+LRP + R NL + + Q +L+
Sbjct: 176 QSEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLV 235
Query: 317 FD---KSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGL 373
P + V + AKKE++ SAG++ +P LL +SGIG E L +
Sbjct: 236 NSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSV 295
Query: 374 NIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF---KKERYQTLSVALQYILNERGPLT 429
I I N SVG NL DH+ L F V+ TF ++ + Q+ GPLT
Sbjct: 296 GIDTIVNNPSVGRNLSDHLLL-PAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLT 354
Query: 430 SLGGVEGLAFVNTKYAPSETHQGSN 454
+L LA++ S +
Sbjct: 355 ALIA-NHLAWLRLPSNSSIFQTFPD 378
Score = 277 bits (711), Expect = 3e-82
Identities = 79/290 (27%), Positives = 114/290 (39%), Gaps = 26/290 (8%)
Query: 655 HILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVL 713
+L LS GIG E L + I I N SVG NL DH+ L F V+ TF
Sbjct: 279 ILLQLS-GIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLP-AAFFVNSNQTFDNIFRDSS 336
Query: 714 LCLSE-------RTDDSTYSTYTNTLFPR----YIRLQSKNPLHYPLIEPNYFQHRRD-- 760
+ RT T + + R Q+ ++ +
Sbjct: 337 EFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQW 396
Query: 761 IETLIEGIRIAFNVSASAAFKK-----YIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGI 815
I +S + A I+L + NP PLI P Y DI T+I+ +
Sbjct: 397 FHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAV 456
Query: 816 RIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGP 875
+ + A+ + RP P D E +R TI+HP T M P
Sbjct: 457 KSNLRFLSGQAWADFVIRPFD---PRLRDPT--DDAAIESYIRDNANTIFHPVGTASMSP 511
Query: 876 PTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
VVDP L+V GVDGLR++D SI+P + + P ++G++GAD+
Sbjct: 512 RGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADL 561
Score = 127 bits (322), Expect = 9e-31
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
M P VVDP L+V GVDGLR++D SI+P + + P ++G++GAD+
Sbjct: 509 MSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADL 561
Score = 111 bits (280), Expect = 2e-25
Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 29/168 (17%)
Query: 478 HILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTF---KKERY 533
+L LS GIG E L + I I N SVG NL DH+ L F V+ TF ++
Sbjct: 279 ILLQLS-GIGDENDLSSVGIDTIVNNPSVGRNLSDHLLL-PAAFFVNSNQTFDNIFRDSS 336
Query: 534 QTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGD------WPDVQFHFAPSSVNS 587
+ Q+ GPLT+L LA++ S H+
Sbjct: 337 EFNVDLDQWTNTRTGPLTALIA-NHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFS-- 393
Query: 588 DGGEQIRKILGLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNGIRI 635
++ F+ ++ L+ P++ G+ I++
Sbjct: 394 -------------NQWFHPAIPRPDTGSFMSVTNALISPVARGD-IKL 427
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 501 bits (1293), Expect = e-166
Identities = 98/409 (23%), Positives = 163/409 (39%), Gaps = 44/409 (10%)
Query: 70 LRYNNMDPESRPTN--TKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG--- 124
L +D +S + +K + YD+I+ G G G VA +L+ENP K+L+IE G
Sbjct: 2 LPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYES 61
Query: 125 DENEISDIPSLAGYLQLSELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNA 184
++ I + P+ G + + +D Y T P + N GK LGGS+++N
Sbjct: 62 NDGAIIEDPNAYGQIFGTTVDQNYLTVPLIN---------NRTNNIKAGKGLGGSTLING 112
Query: 185 MIYVRGNKNDYDQWERL-GNPGWGYKDVLPYFKKSEDNRNEYLLR--------TPYHSKG 235
+ R +K D WE++ G GW + ++ Y KK+E R + H
Sbjct: 113 DSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTN 172
Query: 236 GYLTVQESPW---HSPLAAAFVKAGEELGYE-NRDINGERQTGFMIAQGTI-RRGSRCST 290
G + SP+ A + LG +D G + + R
Sbjct: 173 GTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDA 232
Query: 291 SKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISS 349
++A+L P R NL I ++LF ++ P+AVG+ + AK E++ +
Sbjct: 233 ARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLA 292
Query: 350 AGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKE 409
AG+ SP +L SGIG + L N+ + +L VG N+QD ++ + +
Sbjct: 293 AGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTT-TVSSRASSAGAGQGQ 351
Query: 410 R---YQTLSVALQYILNERGPLT-----------SLGGVEGLAFVNTKY 444
Y R L + GG + + +Y
Sbjct: 352 AVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQY 400
Score = 273 bits (701), Expect = 1e-80
Identities = 60/289 (20%), Positives = 98/289 (33%), Gaps = 28/289 (9%)
Query: 655 HILVLSSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPVT---------- 704
IL S GIG + L N+ + +L VG N+QD ++
Sbjct: 300 LILEYS-GIGLKSVLDQANVTQLLDLPVGINMQDQTTTT-VSSRASSAGAGQGQAVFFAN 357
Query: 705 ----FKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRD 760
F Q L+ + D T F L+ + Y
Sbjct: 358 FTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALK----VQYENYRNWLLDEDVA 413
Query: 761 IETLIEGIRIAFNVSASAAFKK---YIRLQSKNPLHYPL-IEPNYFQHRRDIETLIEGIR 816
L N + + S +P + +P +F + D+ +
Sbjct: 414 FAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASK 473
Query: 817 IAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPP 876
+A ++++ A ++Y + L PG + + + W + +H S+C M
Sbjct: 474 LARDLTSQGAMKEYFAGETL---PGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMS- 529
Query: 877 TDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
+ VVD +VYG GLRVID SI P VS + + K AD
Sbjct: 530 RELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADA 578
Score = 123 bits (311), Expect = 3e-29
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
M +L VVD +VYG GLRVID SI P VS + + K AD
Sbjct: 527 MMSR-ELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADA 578
Score = 89.2 bits (222), Expect = 2e-18
Identities = 27/161 (16%), Positives = 45/161 (27%), Gaps = 21/161 (13%)
Query: 478 HILVLSSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKER---YQ 534
IL S GIG + L N+ + +L VG N+QD ++ + +
Sbjct: 300 LILEYS-GIGLKSVLDQANVTQLLDLPVGINMQDQTTT-TVSSRASSAGAGQGQAVFFAN 357
Query: 535 TLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIR 594
Y R L + + + VQ+ +
Sbjct: 358 FTETFGDYAPQARDLLNTKLD-QWAEETVARGGFHNVTALKVQYENYRNW---------- 406
Query: 595 KILGLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNGIRI 635
L D F L+ L P + G+ + I
Sbjct: 407 --LLDEDVAFAELFMDTEGK--INFDLWDLIPFTRGS-VHI 442
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 491 bits (1266), Expect = e-163
Identities = 109/371 (29%), Positives = 164/371 (44%), Gaps = 33/371 (8%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG---DENEISDIPSLAGYLQLSELDWK 147
+DF+++G G+AG VA RL+ENP+ +L++EAG ++ PS A L+ S+ DW
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 148 YKTEPPMGDSAYCLAMVGDRCNWP--RGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPG 205
YKT +R P RGK LGGSS LN +V G+K +DQWE G
Sbjct: 67 YKTTM-------VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKE 119
Query: 206 WGYKDVLPYFKKSEDNR---NEYLLRTPYHSKGGYLTVQESPWH---SPLAAAFVKAGEE 259
W + ++PY +KS Y GG + + + +P KA +
Sbjct: 120 WTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKS 179
Query: 260 LGYE-NRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFD 318
+G +I G TI RG R +FL ++ + N+ I E + RL+ +
Sbjct: 180 MGQPLIENIYDGEMDGLTHCCDTIYRGQRSG---SFL-FVKNKPNITIVPEVHSKRLIIN 235
Query: 319 KSGPVPKAVGIEIL-RDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPI 377
++ G+ ++ G + A +E+I S G +P+LLM+SGIGP L I
Sbjct: 236 EAD--RTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINT 293
Query: 378 IKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQTL----SVALQYILNERGPLTSLG 432
I + VG NL DH G+ V + +V Y N GP+ S G
Sbjct: 294 IVDSRHVGQNLMDHPGV-PFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGS-G 351
Query: 433 GVEGLAFVNTK 443
+E + F
Sbjct: 352 LLELVGFPRID 362
Score = 262 bits (673), Expect = 7e-77
Identities = 70/308 (22%), Positives = 106/308 (34%), Gaps = 49/308 (15%)
Query: 655 HILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVL 713
+L+LS GIGP L I I + VG NL DH G+ V +
Sbjct: 273 KLLMLS-GIGPTRELSRHGINTIVDSRHVGQNLMDHPGVP-FVLRVKDGFGMDDVLLRHG 330
Query: 714 LCL-------------------SE-----RTDDSTYSTYTNTLFPRYIRLQSKNPLHYPL 749
E R D + + + PL
Sbjct: 331 PKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLE---KDAEYRKAKAANGGKDPFSPL 387
Query: 750 IEPNYFQHRRDI--ETLIEGIRIAFNVSASAAF---------KKYIRLQSKNPLHYPLIE 798
+P++ + + L S +P P I
Sbjct: 388 GQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNIN 447
Query: 799 PNYFQHRRDIETLIEGIRIAFN-VSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSL 857
N+F + DI + EGIR +++ + F+ MP L SD+ ++
Sbjct: 448 LNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPWEMP------LDSDKEMHRAV 501
Query: 858 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 917
T +HPT T ++ + VVDP+L+V+G+ LRV DAS++PII
Sbjct: 502 LDRCQTAFHPTGTARLSKN-IDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYA 560
Query: 918 IGEKGADM 925
+GEK ADM
Sbjct: 561 VGEKCADM 568
Score = 124 bits (313), Expect = 1e-29
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
+ D VVDP+L+V+G+ LRV DAS++PII +GEK ADM
Sbjct: 517 LSKNIDQ-GVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADM 568
Score = 109 bits (275), Expect = 7e-25
Identities = 38/171 (22%), Positives = 54/171 (31%), Gaps = 35/171 (20%)
Query: 478 HILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQTL 536
+L+LS GIGP L I I + VG NL DH G+ V +
Sbjct: 273 KLLMLS-GIGPTRELSRHGINTIVDSRHVGQNLMDHPGV-PFVLRVKDGFGMDDVLLRHG 330
Query: 537 ----SVALQYILNERGPLTSLGGVEGLAFVNTK---------------YAPSGGDWPDVQ 577
+V Y N GP+ S G +E + F P Q
Sbjct: 331 PKRDAVVSAYNKNRSGPVGS-GLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQ 389
Query: 578 FHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKPLINAETWTILPLLLRPLS 628
HF V + F + + T++ L+RP+S
Sbjct: 390 PHFELDFV------------CMFGTAFQWHFPTPKTGDHLTVVVDLVRPIS 428
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 483 bits (1246), Expect = e-160
Identities = 100/395 (25%), Positives = 158/395 (40%), Gaps = 44/395 (11%)
Query: 76 DPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG---DENEISDI 132
DP+ T D+I+ G G G A RL+ENP+ +L+IE+G D I +
Sbjct: 11 DPKDVSGRT------VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIED 64
Query: 133 PSLAGYLQLSELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNK 192
+ G + S +D Y+T A G LGGS+++N + R +K
Sbjct: 65 LNAYGDIFGSSVDHAYETVEL--------ATNNQTALIRSGNGLGGSTLVNGGTWTRPHK 116
Query: 193 NDYDQWERL-GNPGWGYKDVLPYFKKSEDNRNEYLLR--------TPYHSKGGYLTV--- 240
D WE + GN GW + +V Y ++E R + H G +
Sbjct: 117 AQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPR 176
Query: 241 QESPWHSPLAAAFVKAGEELGYE-NRDINGERQTGFMIAQGTIRR-GSRCSTSKAFLRPI 298
+SP+ A + A E+ G +D G + T+ R ++ +L P
Sbjct: 177 DTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPN 236
Query: 299 RLRKNLHIAMETQALRLLFDKSGPVPKAVGIEI-LRDGRKHIIRAKKEIISSAGAINSPQ 357
R NL + ++L ++G P+AVG+E G H + AK E++ +AG+ SP
Sbjct: 237 YQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPT 296
Query: 358 LLMVSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPV----------TFK 407
+L SGIG + L+ L I + +L VG NLQD + + TF
Sbjct: 297 ILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTA-TVRSRITSAGAGQGQAAWFATFN 355
Query: 408 KERYQTLSVALQYILNERGPLTSLGGVEGLAFVNT 442
+ A + + + V F NT
Sbjct: 356 ETFGDYSEKAHELLNTKLEQWAEE-AVARGGFHNT 389
Score = 267 bits (684), Expect = 3e-78
Identities = 67/294 (22%), Positives = 105/294 (35%), Gaps = 38/294 (12%)
Query: 655 HILVLSSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVLL 714
IL S GIG + L+ L I + +L VG NLQD + + + +
Sbjct: 296 TILEYS-GIGMKSILEPLGIDTVVDLPVGLNLQDQTTAT-VRSRITSAGAGQGQA----- 348
Query: 715 CLSERTDDSTYSTYTNTLFPRYIRLQSK-NPLHYPLIEPNYFQHRRD-------IETLIE 766
+ T+ + + L +K + F + I
Sbjct: 349 ----AWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIV 404
Query: 767 GIRIAFNVSASAAFKK--------------YIRLQSKNP-LHYPLIEPNYFQHRRDIETL 811
+A++ Y+ + K+P LH+ +P YF + D+
Sbjct: 405 NHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQ 464
Query: 812 IEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTC 871
++A N+S S A Q Y + + PG + W + + YH TC
Sbjct: 465 AAATQLARNISNSGAMQTYFAGETI---PGDNLAYDADLSAWTEYIPYHFRPNYHGVGTC 521
Query: 872 KMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
M P + VVD RVYGV GLRVID SI P +S + + K +D
Sbjct: 522 SMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDA 574
Score = 124 bits (313), Expect = 2e-29
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
M P ++ VVD RVYGV GLRVID SI P +S + + K +D
Sbjct: 523 MMPK-EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDA 574
Score = 86.9 bits (216), Expect = 1e-17
Identities = 29/168 (17%), Positives = 47/168 (27%), Gaps = 35/168 (20%)
Query: 478 HILVLSSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPV----------T 527
IL S GIG + L+ L I + +L VG NLQD + + T
Sbjct: 296 TILEYS-GIGMKSILEPLGIDTVVDLPVGLNLQDQTTA-TVRSRITSAGAGQGQAAWFAT 353
Query: 528 FKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNS 587
F + A + + + V F NT + + + + +
Sbjct: 354 FNETFGDYSEKAHELLNTKLEQWAEE-AVARGGFHNT---TALLIQYENYRDWIVNHNVA 409
Query: 588 DGGEQIRKILGLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNGIRI 635
L A + L P + G + I
Sbjct: 410 YSE------------------LFLDTAGVASFDVWDLLPFTRGY-VHI 438
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 425 bits (1095), Expect = e-138
Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 37/330 (11%)
Query: 80 RPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSLAGYL 139
L +YD++++G G++G +A LSE +K+L++E G ++ + G++
Sbjct: 16 YDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFV 73
Query: 140 QLSELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWE 199
+ + KT + D + RG+VLGG+S++NA +Y R N + Y
Sbjct: 74 YNLQQEDDGKTPV-------ERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS- 125
Query: 200 RLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEE 259
W V ++ ED Y W S AF++AG
Sbjct: 126 ---GVDWDMDLVNQTYEWVEDTI-------VYKPNSQ-------SWQSVTKTAFLEAGVH 168
Query: 260 LGYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDK 319
+ + + + G I T + L NL + + +++F
Sbjct: 169 PNH---GFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN-SNNLRVGVHASVEKIIFSN 224
Query: 320 SGPVPKAVGIEILRDG---RKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIP 376
P A G+ + +R+K E+I SAG I +PQLL++SG+GPE +L LNIP
Sbjct: 225 -APGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIP 283
Query: 377 IIKNL-SVGHNLQDHVGLGGLTFIVDGPVT 405
++ + VG L D+ + + P+
Sbjct: 284 VVLSHPYVGQFLHDNPRN-FINILPPNPIE 312
Score = 228 bits (585), Expect = 4e-65
Identities = 55/299 (18%), Positives = 98/299 (32%), Gaps = 78/299 (26%)
Query: 655 HILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKER---- 709
+L+LS G+GPE +L LNIP++ + VG L D+ + + P+
Sbjct: 264 QLLLLS-GVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF-INILPPNPIEPTIVTVLGI 321
Query: 710 -YQVLLCLSERTD--DSTYSTYTNTLFPR-------------------YIRLQ-SKNPLH 746
C + + ++ +P + L+ S N
Sbjct: 322 SNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRV 381
Query: 747 YPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYFQHRR 806
P ++ NY+ + D+ + G++ + ++ A K Y P +E
Sbjct: 382 SPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYK------VEDLPGVE-------- 427
Query: 807 DIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYH 866
L P+P D +E R + +H
Sbjct: 428 ------------------------GFNILGIPLPKDQT----DDAAFETFCRESVASYWH 459
Query: 867 PTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 925
C +G V+D RV G++ LRV+D S P + +P +M+G
Sbjct: 460 YHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIK 512
Score = 116 bits (293), Expect = 3e-27
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
+G V+D RV G++ LRV+D S P + +P +M+G
Sbjct: 466 VG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIK 512
Score = 85.7 bits (213), Expect = 3e-17
Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 50/159 (31%)
Query: 478 HILVLSSGIGPEEHLQGLNIPIIKNL-SVGHNLQDHVGLGGLTFIVDGPVTFKKERYQTL 536
+L+LS G+GPE +L LNIP++ + VG L D+ + + P+
Sbjct: 264 QLLLLS-GVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF-INILPPNPIE--------- 312
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKI 596
++ V G++ + + S + F F PSS
Sbjct: 313 --------------PTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSY---------- 348
Query: 597 LGLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNGIRI 635
PL N+ + PLS G+ + +
Sbjct: 349 -------------PLPNSTFAHFASKVAGPLSYGS-LTL 373
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 408 bits (1050), Expect = e-131
Identities = 112/360 (31%), Positives = 171/360 (47%), Gaps = 45/360 (12%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIPSLAGYLQLSELDWKYK 149
D +++G GSAG+++A RLSE+PD ++LLIEAG + P+ LQ DW Y+
Sbjct: 18 CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYR 77
Query: 150 TEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQW-ERLGNPGWGY 208
TE G G +W RG+++GGSS L+AM Y+RG+ +D+ W + G+ WG+
Sbjct: 78 TEAQAG-------TAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGW 130
Query: 209 KDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTV--QESPWHSPLAAAFVKAGEELGY-ENR 265
++LP F+ ED+ L H KGG L + PLA AF++AG LG
Sbjct: 131 DELLPVFQAIEDH---PLGGDGIHGKGGPLPIHLPADEVS-PLARAFIEAGASLGLPRLE 186
Query: 266 DINGERQTGFMIAQGTIRRGSRCSTSKAFLRP-IRLRKNLHIAMETQALRLLFDKSGPVP 324
N G IR G R + + A+L +R RKNL I ++ RL + +
Sbjct: 187 GHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN---- 242
Query: 325 KAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLS-V 383
+ +E++ + A +I+ AGA+ SP LLM SGIGP + L + + ++ +
Sbjct: 243 QVRSLEVVGRQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDI 301
Query: 384 GHNLQDHVGLGGLTFIVDGPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTK 443
G NLQDH+ L Y + P + L E +A++
Sbjct: 302 GRNLQDHL----------------------LGAGNLYAARKPVPPSRLQHSESMAYMRAD 339
Score = 217 bits (556), Expect = 2e-61
Identities = 65/303 (21%), Positives = 96/303 (31%), Gaps = 89/303 (29%)
Query: 655 HILVLSSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVT--------- 704
+L+ S GIGP + L + + ++ +G NLQDH+ G + PV
Sbjct: 274 ALLMRS-GIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSES 332
Query: 705 --FKKERYQVLLC-----------------LSERTDDSTYSTYTNTLFPR---YIRLQSK 742
+ + S YS P +R+
Sbjct: 333 MAYMRADSFTAAGQPEIVVGCGVAPIVSESFPAPAAGSAYSLLFGITHPTSRGSVRISGP 392
Query: 743 NPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEPNYF 802
+I+P Y Q RD E + +
Sbjct: 393 ELGDRLIIDPAYLQTGRDRERFRRALEAS------------------------------- 421
Query: 803 QHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTF 862
R I + R LL PG S + +
Sbjct: 422 ---RTI-------------GHRDELAGWRERELL---PGTPN----SAAEMDDFIARSVI 458
Query: 863 TIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 922
T +HP TC+MG DP+AVVD LR+ +D L V+DASIMP + +G +A + I E
Sbjct: 459 THHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETF 516
Query: 923 ADM 925
A
Sbjct: 517 ARQ 519
Score = 119 bits (300), Expect = 4e-28
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MG D +AVVD LR+ +D L V+DASIMP + +G +A + I E A
Sbjct: 469 MGK--DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQ 519
Score = 90.6 bits (226), Expect = 7e-19
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 44/159 (27%)
Query: 478 HILVLSSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKERYQTL 536
+L+ S GIGP + L + + ++ +G NLQDH+ L
Sbjct: 274 ALLMRS-GIGPHDVLDAAGVGCLIDMPDIGRNLQDHL----------------------L 310
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKI 596
Y + P + L E +A++ + + P++ + + S+
Sbjct: 311 GAGNLYAARKPVPPSRLQHSESMAYMRAD-SFTAAGQPEIVVGCGVAPIVSESFPAPAAG 369
Query: 597 LGLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNGIRI 635
+++L + P S G+ +RI
Sbjct: 370 SA------------------YSLLFGITHPTSRGS-VRI 389
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 403 bits (1037), Expect = e-129
Identities = 104/342 (30%), Positives = 161/342 (47%), Gaps = 29/342 (8%)
Query: 74 NMDPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDI 132
++D ++ + +D+IV+G GSAGA VA RLSE+P + L+EAG D +
Sbjct: 2 HIDNIENLSDRE-----FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVL 56
Query: 133 PSLAGY-LQLSELDWKYKTEP-PMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRG 190
L S DW Y EP G+S R KV+GG S N+ I
Sbjct: 57 QLDRWMELLESGYDWDYPIEPQENGNS---------FMRHARAKVMGGCSSHNSCIAFWA 107
Query: 191 NKNDYDQWE-RLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPL 249
+ D D+WE + G GW + P +K+ E N + P+H G + + P P
Sbjct: 108 PREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGP-DAPHHGDSGPVHLMNVPPKDPT 166
Query: 250 AAAFVKAGEELGY-ENRDINGERQT-GFMIAQGTIRR-GSRCSTSKAFLRPIRLRKNLHI 306
A + A E+ G + G G Q R G+R S+S +++ PI ++N +
Sbjct: 167 GVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTL 226
Query: 307 AMETQALRLLFDKSGPVPKAVGIEILRD--GRKHIIRAKKEIISSAGAINSPQLLMVSGI 364
+A +L+FD + G++I+ G H + A+ E++ S GAI++P+LLM+SGI
Sbjct: 227 LTGLRARQLVFDADR---RCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI 283
Query: 365 GPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVT 405
GP HL I ++ + VG +LQDH + F P+
Sbjct: 284 GPAAHLAEHGIEVLVDSPGVGEHLQDHPEG-VVQFEAKQPMV 324
Score = 238 bits (611), Expect = 1e-68
Identities = 92/305 (30%), Positives = 138/305 (45%), Gaps = 44/305 (14%)
Query: 655 HILVLSSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKERYQVL 713
+L+LS GIGP HL I ++ + VG +LQDH + F P+ + ++
Sbjct: 276 KLLMLS-GIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGV-VQFEAKQPMVAESTQW-WE 332
Query: 714 LCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFN 773
+ + T+D L P + +Y D+ TL G N
Sbjct: 333 IGIFTPTEDG---------------------LDRPDLMMHYGSVPFDMNTLRHGYPTTEN 371
Query: 774 -VSASAAFKK-----YIRLQSKNPLHYPLIEPNYFQH--RRDIETLIEGIRIAFNVSASA 825
S + +RL+S++ P+++P YF D+ ++ GIR A ++A
Sbjct: 372 GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQP 431
Query: 826 AFQKYNSRPLLTPMPGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDP 885
A ++ R L PG E +DE + +R T+YHP T +MG D + +DP
Sbjct: 432 AMAEWTGRELS---PGV---EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDP 485
Query: 886 RLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRYTIRPALMGPATDLEAV 945
LRV GV GLRV DAS+MP V+ NPN +MIGE+ AD+ IR A G T +A
Sbjct: 486 ELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADL-----IRSARAGETTTADAE 540
Query: 946 VDPRL 950
+ L
Sbjct: 541 LSAAL 545
Score = 124 bits (315), Expect = 7e-30
Identities = 29/53 (54%), Positives = 36/53 (67%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
MG D + +DP LRV GV GLRV DAS+MP V+ NPN +MIGE+ AD+
Sbjct: 473 MGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADL 525
Score = 81.1 bits (201), Expect = 6e-16
Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 45/159 (28%)
Query: 478 HILVLSSGIGPEEHLQGLNIPIIKNLS-VGHNLQDHVGLGGLTFIVDGPVTFKKERYQTL 536
+L+LS GIGP HL I ++ + VG +LQDH
Sbjct: 276 KLLMLS-GIGPAAHLAEHGIEVLVDSPGVGEHLQDH-----------------------P 311
Query: 537 SVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKI 596
+Q+ + S E F T+ G D PD+ H+ + +
Sbjct: 312 EGVVQFEAKQPMVAESTQWWEIGIFTPTE---DGLDRPDLMMHYGSVPFDMNTLRHGYPT 368
Query: 597 LGLRDRIFNTLYKPLINAETWTILPLLLRPLSTGNGIRI 635
+++ P + S G +R+
Sbjct: 369 TE----------------NGFSLTPNVTHARSRGT-VRL 390
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 361 bits (928), Expect = e-113
Identities = 74/369 (20%), Positives = 127/369 (34%), Gaps = 54/369 (14%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG-DENEISDIP----SLAGYLQLSE-- 143
YD+I++GAG G + A+RLSE K+LL+E GG + + + L +
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIP 66
Query: 144 -LDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLG 202
L T+ G ++GG + +N +Y N D+
Sbjct: 67 GLFESLFTDSNPF-------WWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----S 114
Query: 203 NPGW--GYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAFVKAGEEL 260
+ GW + + PY K T + S G +++S + + +K
Sbjct: 115 SVGWPSSWTNHAPYTSKLSSRLPS----TDHPSTDGQRYLEQSF---NVVSQLLKGQGYN 167
Query: 261 GYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKS 320
D + F + G R +L+ R N ++ + S
Sbjct: 168 QATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS 227
Query: 321 GPVPKAVGIEILRD----GRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLNIP 376
+ +G++ + K +I SAGA + ++L SGIGP + +Q +
Sbjct: 228 ----QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSN 283
Query: 377 II-----------KNLSVGHNLQDHVGLGGLTFIVDGPVTF----KKERYQTLSVALQYI 421
NL VG N QD+ + L F + + A QY+
Sbjct: 284 PTAAAALPPQNQWINLPVGMNAQDNPSI-NLVFTHPSIDAYENWADVWSNPRPADAAQYL 342
Query: 422 LNERGPLTS 430
N+ G
Sbjct: 343 ANQSGVFAG 351
Score = 202 bits (515), Expect = 1e-55
Identities = 54/313 (17%), Positives = 100/313 (31%), Gaps = 80/313 (25%)
Query: 655 HILVLSSGIGPEEHLQGLNIPII-----------KNLSVGHNLQDHVGLGGLTFIVDGPV 703
IL S GIGP + +Q + NL VG N QD+ + L F
Sbjct: 264 RILFQS-GIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSIN-LVFTHPSID 321
Query: 704 TFKKERYQVLLCLSERTDDSTYSTYTNTLFP-------RYIRLQSKNPLHYPLIEPNYFQ 756
Y + + +Y+ QS + N+++
Sbjct: 322 A--------------------YENWADVWSNPRPADAAQYLANQS-GVFAGASPKLNFWR 360
Query: 757 HR-------RDIETLIE-GIRIAFNVSASAAFKKY---------------IRLQSKNPLH 793
R + + G + A + + I + + L
Sbjct: 361 AYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDA--ALR 418
Query: 794 YPLIEPNYFQHRRDIETLIEGIRIAF-NVSASAAFQKYNSRPLLTPMPGCAMFELFSDEY 852
++ P + + D L++ + N+ + T +EY
Sbjct: 419 GTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVTQT-----------LEEY 467
Query: 853 WECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPN 912
+ + T H S+ +G + AVVD ++V+G + L ++DA I+P + +GNP
Sbjct: 468 VD-AYDPATMNSNHWVSSTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQ 525
Query: 913 APTIMIGEKGADM 925
+ E+ A
Sbjct: 526 GTLMSAAEQAAAK 538
Score = 119 bits (300), Expect = 5e-28
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADM 988
+G + AVVD ++V+G + L ++DA I+P + +GNP + E+ A
Sbjct: 487 IGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAK 538
Score = 87.6 bits (218), Expect = 6e-18
Identities = 27/129 (20%), Positives = 42/129 (32%), Gaps = 20/129 (15%)
Query: 478 HILVLSSGIGPEEHLQGLNIPII-----------KNLSVGHNLQDHVGLGGLTFIVDGPV 526
IL S GIGP + +Q + NL VG N QD+ + L F
Sbjct: 264 RILFQS-GIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSIN-LVFTHPSID 321
Query: 527 TF----KKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAP 582
+ + A QY+ N+ G + + Y+ S G Q P
Sbjct: 322 AYENWADVWSNPRPADAAQYLANQSGVFAG-ASPKLNFW--RAYSGSDGFTRYAQGTVRP 378
Query: 583 SSVNSDGGE 591
+ + +
Sbjct: 379 GAASVNSSL 387
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 107 bits (268), Expect = 2e-24
Identities = 59/326 (18%), Positives = 107/326 (32%), Gaps = 41/326 (12%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD----------------ENEISDIPS 134
+VIG G AV A RL E + L++E G ++ S
Sbjct: 6 VPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 64
Query: 135 LAGYLQLSELDWKYKTEPPMGDSAYCLAMV-GDRCNWPRGKVLGGSSVLNAMIYVRGNKN 193
L W + A L V D+ + G+ +GG S++N + V ++
Sbjct: 65 NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRS 124
Query: 194 DYDQWERLGNPGWGYKDVL-PYFKKSEDNR--NEYLLRTPYHSKGGYLT--VQESPWHSP 248
+++ P ++ YF ++ N + ++ +E +
Sbjct: 125 YFEEI----LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAG 180
Query: 249 LAAAFVKAGEELGYENRDINGERQTGFMIAQ-GTIRRGSRCSTSKAFLRPIRLRKNLHIA 307
L FV + GY R+ GE + + + S K +L + I
Sbjct: 181 LGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQ 240
Query: 308 METQALRLLFDKSGPVPKAVGIEILRDGRKHIIR---AKKEIISSAGAINSPQLLMVSGI 364
Q + K G A+ +E K + + + + AG++ S +LL+ +
Sbjct: 241 TLHQVKTIRQTKDG--GYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARD 298
Query: 365 GPEEHLQGLNIPIIKNLSVGHNLQDH 390
L L N VG +
Sbjct: 299 --TGTLPNL------NSEVGAGWGPN 316
Score = 72.4 bits (177), Expect = 3e-13
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 865 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
YHP C +G D RV G L V D S++P V NP + E+ +
Sbjct: 441 YHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Score = 60.1 bits (145), Expect = 2e-09
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 936 MGPATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
+G D RV G L V D S++P V NP + E+ +
Sbjct: 449 LG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 105 bits (263), Expect = 1e-23
Identities = 47/339 (13%), Positives = 105/339 (30%), Gaps = 23/339 (6%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSELDWKYKT 150
YD +++G+G G A L +K+ + + G ++ + ++ + K+
Sbjct: 47 YDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVN 105
Query: 151 --EPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWER---LGNPG 205
+ + + + + P V N + + +G
Sbjct: 106 VIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMS 165
Query: 206 WGYKDVLPYFKKSE-------DNRNEYLLRTPYHSKG-GYLTVQESPWHSPLAAAFVKAG 257
+ P F + + D + ++K Y + + V
Sbjct: 166 TAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNK 225
Query: 258 EELGYEN-RDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPI--RLRKNLHIAMETQALR 314
Y+ RD + + S + RP + ++ R
Sbjct: 226 LTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACER 285
Query: 315 LLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGAINSPQLLMVSGIGPEEHLQGLN 374
++ + +++ I L G + I+A + +AGA+++ QLL+ SG G N
Sbjct: 286 VVRNALNSEIESLHIHDLISGDRFEIKADV-YVLTAGAVHNTQLLVNSGFGQLGRPNPAN 344
Query: 375 IPIIKNLS--VGHNLQDHVGLGGLTFIVDGPVTFKKERY 411
P L +G + + + T + + K
Sbjct: 345 PP---ELLPSLGSYITEQSLVFCQTVMSTELIDSVKSDM 380
Score = 56.0 bits (134), Expect = 5e-08
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 866 HPTSTCKMGP-PTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 924
H T +MG + V+ RV+G L + +P NP + + K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Score = 44.4 bits (104), Expect = 2e-04
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 936 MGP-ATDLEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
MG + V+ RV+G L + +P NP + + K +
Sbjct: 555 MGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 92.9 bits (230), Expect = 1e-19
Identities = 42/308 (13%), Positives = 90/308 (29%), Gaps = 52/308 (16%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSL--------------- 135
+VIG+G GAV A RL++ ++E G + +
Sbjct: 12 VPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLA 70
Query: 136 -AGYLQLSELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKND 194
+S + + +G+ +GG S++N + V +N
Sbjct: 71 DKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNY 130
Query: 195 YDQWERLGNPGWGYKDVL-PYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHSPLAAAF 253
+++ P ++ YF ++ ES A
Sbjct: 131 FEEIL----PSVDSNEMYNKYFPRANTG---------LGVNNIDQAWFESTEWYKFARTG 177
Query: 254 VKAGEELGYE-------------NRDINGERQ-TGFMIAQGTIRRGSRCSTSKAFLRPIR 299
K + G+ ++ G+ +G + S K +L
Sbjct: 178 RKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAA 237
Query: 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEIL----RDGRKHIIRAKKEIISSAGAINS 355
L I + ++ +V +E + ++ A + +AG++ +
Sbjct: 238 ATGKLTITTLHRVTKVAPATGS--GYSVTMEQIDEQGNVVATKVVTA-DRVFFAAGSVGT 294
Query: 356 PQLLMVSG 363
+LL+
Sbjct: 295 SKLLVSMK 302
Score = 59.0 bits (142), Expect = 5e-09
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 863 TIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 922
YHP + D R+ GL V+D S++P V NP + E+
Sbjct: 444 FTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERN 497
Query: 923 AD 924
D
Sbjct: 498 MD 499
Score = 49.8 bits (118), Expect = 4e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 945 VVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 987
D R+ GL V+D S++P V NP + E+ D
Sbjct: 457 ATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMD 499
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 80.9 bits (199), Expect = 2e-15
Identities = 89/546 (16%), Positives = 175/546 (32%), Gaps = 177/546 (32%)
Query: 61 PVVMAAL-----TVLRYNNM---------DPESRPTNTKTLLRAYDFIVIGAGSAGAVVA 106
V+ L L N++ + ++ TK L++ Y ++A
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-I-------TARIMA 133
Query: 107 NRLSENPDWKILLIEAGGDENEISDIPSLAG------YLQ-LSELDWKYKTEPPMGDSAY 159
R + L G ++ + G Y + L +L Y+T +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNTDDYFEELRDL---YQTYHVLVGD-- 186
Query: 160 CLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGYKDVLPYFKKSE 219
+ + + L +++ ++ +G + +W L NP P +
Sbjct: 187 LIKFSAETLS-----ELIRTTLDAEKVFTQGL--NILEW--LENP-----SNTP----DK 228
Query: 220 DNRNEYLLRTPYHSKGGYLTVQESPWHS-PL-----AAAFVKAGEELGYENRDINGERQT 273
D YLL P S PL A +V + LG+ ++ +
Sbjct: 229 D----YLLSIPI---------------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 274 GFMIAQGTI--RRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLF-------------- 317
+QG + + + ++F +R +A+ +LF
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVR-----------KAITVLFFIGVRCYEAYPNTS 318
Query: 318 ------------DKSGPVP--------KAVGIEILRDGRKHIIRAKKEIISSAGAINSPQ 357
++ P P + + + H+ K+ IS +N +
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS---LVNGAK 375
Query: 358 LLMVSGIGPEEHLQGLNIPIIKNLSVGHNL-QDHVGLGGLTFIVDGPVTFKKERYQT--L 414
L+VS GP + L GLN+ ++ L Q + P + +K ++ L
Sbjct: 376 NLVVS--GPPQSLYGLNL-TLRKAKAPSGLDQSRI-----------PFSERKLKFSNRFL 421
Query: 415 SVALQY---ILNERGPLTSLGGVEGLAFVNTKYAPSE-------THQGSNGIRIVFENLD 464
VA + +L L + L N + + T GS+ +R++ ++
Sbjct: 422 PVASPFHSHLLVPASDLI----NKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSIS 476
Query: 465 KVLV--IRRFSC--------PSCHILVL----SSGIGP--EEHLQGLNIPIIKNLSVGHN 508
+ +V I R + HIL +SG+G + G + +I ++ N
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
Query: 509 LQDHVG 514
D G
Sbjct: 537 PDDDYG 542
Score = 72.0 bits (176), Expect = 9e-13
Identities = 94/547 (17%), Positives = 164/547 (29%), Gaps = 187/547 (34%)
Query: 121 EAGGDENEISDIPSLAGYLQ---------------------LSELDWKY----------- 148
D+ + + +L L+E + Y
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 149 ----KTEPPMGDS-----AYCLA-MVGDRCNWPRGKVLGGSSVL-------NAMIYV--- 188
+ + + + Y A ++ R P K +S L NA +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKR---PFDK--KSNSALFRAVGEGNAQLVAIFG 161
Query: 189 -RGNKNDY-----DQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTP-----YHSKG-- 235
+GN +DY D ++ Y ++ K L+RT ++G
Sbjct: 162 GQGNTDDYFEELRDLYQT-------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 236 --------------GYLTVQESPWHSPL-----AAAFVKAGEELGYENRDINGERQTGFM 276
YL P PL A +V + LG+ ++ +
Sbjct: 215 ILEWLENPSNTPDKDYLL--SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 277 IAQGTI--RRGSRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRD 334
+QG + + + ++F +R +A+ +LF +G+
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVR-----------KAITVLF--------FIGVRCYEA 313
Query: 335 GRKHIIRAK--KEIISSAGAINSPQLLMVSGIGPEEHLQGLNIPIIK--NLSVGHNLQDH 390
+ ++ + + + SP L +S + +E +Q + N + Q
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLS-ISNL-TQEQVQ----DYVNKTNSHLPAGKQVE 367
Query: 391 VGLGGLTFIVDGPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSETH 450
+ L V+G V+ GP SL G+ L K APS
Sbjct: 368 ISL------VNGAKNL--------VVS--------GPPQSLYGLN-LTLRKAK-APSGLD 403
Query: 451 QGSNGIRIVFENLDKVLVIRRF---SCP--SCHIL------VLSSGIGPEEHLQG--LNI 497
Q RI F K+ RF + P S H+L + + + I
Sbjct: 404 QS----RIPFSE-RKLKFSNRFLPVASPFHS-HLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 498 PIIKNLSVGHNLQDHVGLGGLTFIVD----GPVTFKKERYQTLSVALQYILNERGPLTSL 553
P+ G +L+ G IVD PV ++ T +IL + GP
Sbjct: 458 PVYDTFD-GSDLRVLSG-SISERIVDCIIRLPVKWET----TTQFKATHIL-DFGP---- 506
Query: 554 GGVEGLA 560
GG GL
Sbjct: 507 GGASGLG 513
Score = 65.8 bits (160), Expect = 7e-11
Identities = 107/635 (16%), Positives = 175/635 (27%), Gaps = 242/635 (38%)
Query: 437 LAFVNTKYAPSETHQGSNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLN 496
L +V++ PS+ Q + + + + L+G +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFE-----NCY-------------------LEGND 100
Query: 497 IPIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKER----YQTLSVALQYILNERGP--L 550
I H L D + KE +A + +
Sbjct: 101 I--------------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 551 TSLGGVEGLAFVNTKYAPSGGDWPDVQFHFAPSSVNSDGGEQIRKILG--------LRDR 602
++G EG A + A F GG Q G LRD
Sbjct: 147 RAVG--EGNAQL---VA---------IF----------GG-Q-----GNTDDYFEELRD- 175
Query: 603 IFNTLYKP----LINAETWTILPLLLRPLST----GNGIRIV--FENLDKV-----LVIR 647
++ T Y LI T+ L+ L G+ I+ EN L+
Sbjct: 176 LYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 648 RFSCP------SCHILVL--SSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIV 699
SCP H +V G P E L+ + L G T
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGE------------------LRSY--LKGATGHS 274
Query: 700 DGPVTFKKERYQVLLCLSERTDDSTYSTYTNT---LFPRYIRLQSKNPLHYPL--IEPNY 754
G VT + + +S + + LF +I ++ YP + P+
Sbjct: 275 QGLVT-------AVAIAETDSWESFFVSVRKAITVLF--FIGVRCY--EAYPNTSLPPSI 323
Query: 755 FQ-------------------HRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKN-PLHY 794
+ + ++ + N A + I L N +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVN----KTNSHLPAGKQVEISL--VNGAKNL 377
Query: 795 -----P--LIEPNYFQHRRDIETLIEGIRIAF-----NVSA-----SAAFQKYNSRPLLT 837
P L N + + ++ RI F S ++ F +S LL
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF---HS-HLLV 433
Query: 838 PMPGCAMFELFSD--EYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGL 895
P +L + + ++ +Y T G D L
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQ---IPVYD-TFD--------------------GSD-L 468
Query: 896 RVIDASIMPIIVSGNPNAPTIMIG----EKGADMTSRYTIRPALMGP--ATDLEAVVDPR 949
RV+ SI IV I+ E + + + GP A+ L + R
Sbjct: 469 RVLSGSISERIV------DCIIRLPVKWETTTQFKATHIL---DFGPGGASGLGVLTH-R 518
Query: 950 LRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEK 984
+ G G+RVI A + NP+ G K
Sbjct: 519 NKD-GT-GVRVIVAGTL----DINPDDD---YGFK 544
Score = 55.1 bits (132), Expect = 1e-07
Identities = 80/473 (16%), Positives = 139/473 (29%), Gaps = 160/473 (33%)
Query: 653 SCHILVLSSG-IGPEEHLQGLNIPIIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQ 711
S L LS G + EH L +P + + LQ+ F K
Sbjct: 5 STRPLTLSHGSL---EH--VLLVPT-ASFFIASQLQE---------------QFNKI--- 40
Query: 712 VLLCLSERTDDSTYSTYTNT---LFPRYIRLQSKNPLHY--PLIEPNYFQHRRDIETLIE 766
L E T+ T L ++ L Y L+EP+ +
Sbjct: 41 ----LPEPTEGFAADDEPTTPAELVGKF--------LGYVSSLVEPSKVGQFDQV----- 83
Query: 767 GIRIAFNVSASAAFKKYIRLQSKNPLH-----YPLIEPNYFQHRRDIETLIEGIRIAFNV 821
+ + F+ L+ + +H +++ I+
Sbjct: 84 -LNLCLT-----EFENCY-LEGND-IHALAAKLLQENDTTLVKTKEL------IKNYITA 129
Query: 822 SASA--AFQKYNSRPLLTPMP-GCA-MFELF-----SDEYWECSLRHFTFTIYHP----- 867
A F K ++ L + G A + +F +D+Y+E LR + YH
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-ELRDL-YQTYHVLVGDL 187
Query: 868 --TSTCKMGPPTDPEAVVDPRLRVYGVDGLRVID-----------ASI---MPII----- 906
S + + + G++ L ++ SI P+I
Sbjct: 188 IKFSAETLSELIRTTLDAEK-VFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 907 --------VSG-NPNAPTIMIGE-----KGADMTSRYTIRPALMGPATDLEAVVDPRLRV 952
+ G P GE KGA S+ + + E+ +
Sbjct: 247 AHYVVTAKLLGFTP-------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 953 YGVD---GLRV--------IDASIMPIIVSGNPNAPTIMIGEKGADMKQ--SYLDQEEEG 999
V G+R + SI+ + N P+ M+ +Q Y+++
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 1000 DPGSEQ--INLKEEDAENRTQWRNGVKK------PSKLPAMSI---KISADSG 1041
P +Q I+L NG K P L +++ K A SG
Sbjct: 360 LPAGKQVEISL-----------VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG 401
Score = 38.9 bits (90), Expect = 0.010
Identities = 38/156 (24%), Positives = 56/156 (35%), Gaps = 54/156 (34%)
Query: 920 EKGADM-TSRYTIRPALMGPATDL--EAVVDPRLR-VYGVDGLRVIDASIMPIIVSGNPN 975
E+G M Y A A D+ A D + YG SI+ I V NP
Sbjct: 1628 EQG--MGMDLYKTSKA----AQDVWNRA--DNHFKDTYGF--------SILDI-VINNPV 1670
Query: 976 APTIMI-GEKGADMKQSYL----DQEEEGDPGSEQINLKEEDAENRTQWRNGVKKPSKL- 1029
TI GEKG ++++Y + +G +E+I KE + + + L
Sbjct: 1671 NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFRS---EKGLL 1726
Query: 1030 -------PAM---------SIK----ISADS---GH 1042
PA+ +K I AD+ GH
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Score = 33.9 bits (77), Expect = 0.40
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 36/118 (30%)
Query: 894 GLRVIDASIMPIIVSGNPNAPTIMI-GEKGADMTSRYTIRPALMGPATDLEAVVDPRLRV 952
G ++D IV NP TI GEKG + Y+ A++ E +VD +L+
Sbjct: 1658 GFSILD------IVINNPVNLTIHFGGEKGKRIRENYS---AMI-----FETIVDGKLKT 1703
Query: 953 YGVDGLRVIDASIMPIIVSGNPNA---------PTIMIGEKGA--DMKQSYLDQEEEG 999
+ + I+ P + + EK A D+K +G
Sbjct: 1704 EKI--FKEINEHSTSYTFRS-EKGLLSATQFTQPALTLMEKAAFEDLK-------SKG 1751
Score = 30.8 bits (69), Expect = 3.2
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 17/91 (18%)
Query: 900 ASIMPI-----IVS--GNPNAPTIMIGEKGADMTSRYTIRPALMGPATDLEAVVDPRLRV 952
A +M I +V G + E G I P + + EA+ RV
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 953 YGVDGLRVIDASI----MP---IIVSGNPNA 976
G V I + + +G+ A
Sbjct: 1834 GKRTGWLV---EIVNYNVENQQYVAAGDLRA 1861
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 1e-10
Identities = 112/799 (14%), Positives = 210/799 (26%), Gaps = 285/799 (35%)
Query: 194 DYDQWERLGNPGWGYKDVLPY----FKKSEDNRN--------------EYLLRTPYHSKG 235
D++ G + YKD+L F + D ++ ++++ + G
Sbjct: 8 DFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 236 GYL---TVQESPWHSPLAAAFVKAGEELGYE-------NRDINGERQTGFMIAQGTIRRG 285
T+ + FV+ + Y+ T I Q R
Sbjct: 64 TLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ----RD 117
Query: 286 SRCSTSKAFLRPIRLRKNLHIAMETQALRLLFDK---------SGPVPKAV-GIEILRDG 335
+ ++ F + R ++ + L L K SG K +++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---KTWVALDVCLSY 174
Query: 336 RKHIIRAKKEIIS--SAGAINSPQLLMVSGIGPEEHLQGLNIPIIKNLSVGHNLQDHVGL 393
+ + I + NSP+ ++ E LQ L I N + + ++
Sbjct: 175 K--VQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTSRSDHSSNI-- 223
Query: 394 GGLTFIVDGPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSETHQGS 453
K R ++ L+ +L + L
Sbjct: 224 --------------KLRIHSIQAELRRLLKSKPYENCL---------------------- 247
Query: 454 NGIRIVFENLDKV---LVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNLSVGHNLQ 510
+V L V F+ SC IL+ + + LS
Sbjct: 248 ----LV---LLNVQNAKAWNAFN-LSCKILLTTR-----------FKQVTDFLSAAT--T 286
Query: 511 DHVGLGGLTFIVDGPVTFKKERYQTLSVALQYILNERGPLTSLGGVEGLAFVNTKYAPSG 570
H+ + +T + + S+ L+Y L+ R + L P
Sbjct: 287 THI------SLDHHSMTLTPD--EVKSLLLKY-LDCR--------PQDLPREVLTTNP-- 327
Query: 571 GDWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKPLINAETWTILPLLLRPLSTG 630
S + E IR L D + L
Sbjct: 328 ---------RRLSII----AESIRDGLATWDNWKHVNCDKLTTI---------------- 358
Query: 631 NGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGLNIPIIKNLSVGHNLQDHV 690
I L+ + F + P +IP LS+
Sbjct: 359 --IESSLNVLEPAEYRKMFD--RLSVF-------PP----SAHIP-TILLSL-------- 394
Query: 691 GL-GGLTFIVDGPVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPL 749
+ + V K +Y + ++ +ST S + Y+ L+ K Y L
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKY---SLVEKQPKESTISIPS-----IYLELKVKLENEYAL 445
Query: 750 IEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHYPLIEP--NYF-QHRR 806
HR +++ Y + + YF H
Sbjct: 446 -------HRS----IVD---------------HY-NIPKTFDSDDLIPPYLDQYFYSH-- 476
Query: 807 DIETLIEGIRIAFNVSASAAFQKYNSRPLLTPMPGCAMFE-LFSDEYW-ECSLRHFTFTI 864
I ++ ++ +F +F D + E +RH +
Sbjct: 477 ----------IGHHLKNIEHPERMT------------LFRMVFLDFRFLEQKIRHDS--- 511
Query: 865 YHPTSTCKMGPPTDPEAVVDPRLRVYG---VDGLRVIDASIMPIIVSGN--PNAPTIMIG 919
T+ G + + L+ Y D + + I+ + P +I
Sbjct: 512 ---TAWNASGSILN--TLQQ--LKFYKPYICDNDPKYERLVNAIL---DFLPKIEENLIC 561
Query: 920 EKGADMTSRYTIRPALMGP 938
K D+ +R ALM
Sbjct: 562 SKYTDL-----LRIALMAE 575
Score = 45.6 bits (107), Expect = 9e-05
Identities = 74/465 (15%), Positives = 138/465 (29%), Gaps = 163/465 (35%)
Query: 572 DWPDVQFHFAPSSVNSDGGEQIRKILGLRDRIFNTLYKPLINAETWTIL----------- 620
D DVQ P S+ S E+I I+ +D + TL L WT+L
Sbjct: 34 DCKDVQD--MPKSILSK--EEIDHIIMSKDAVSGTLR--LF----WTLLSKQEEMVQKFV 83
Query: 621 --------PLLLRPLSTGNGIRIVFENLDKVLVIRRFSCPSCHILVLSSGIGPEEHLQGL 672
L+ P+ T E ++ R + + + +
Sbjct: 84 EEVLRINYKFLMSPIKT--------EQRQPSMMTRMYI--EQRDRLYNDN----QVFAKY 129
Query: 673 NIP-------IIKNLSVGHNLQDHVGLGGLTFIVDGPVTFKKERYQVL---LCLSERTDD 722
N+ + + L L+ + ++DG + K + +CLS +
Sbjct: 130 NVSRLQPYLKLRQALL---ELRPAKNV-----LIDGVLGSGK---TWVALDVCLSYKVQC 178
Query: 723 ST-----YSTYTNTLFPRYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSAS 777
+ N P + L+ L Y I+PN+ R D I++ + S
Sbjct: 179 KMDFKIFWLNLKNCNSPETV-LEMLQKLLY-QIDPNWTS-RSDH---SSNIKLRIH-SIQ 231
Query: 778 AAFKKYIRLQS-KNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFQKYNSRPLL 836
A ++ ++ + +N L L+ N Q+ + AFN+ + + LL
Sbjct: 232 AELRRLLKSKPYENCL---LVLLN-VQNAKAWN--------AFNL---------SCKILL 270
Query: 837 TPMPGCAMFELFSDEYWECSLRHFTFTIYHPTS-----TC-KMGPPTDPEAVVDPRLRVY 890
T L + SL H + T+ P P V+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL------- 323
Query: 891 GVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMTSRYTIRPALMGPATDLEAVVDPRL 950
+ P +S +I E D + +
Sbjct: 324 ----------TTNPRRLS--------IIAESIRDGLATWD------------------NW 347
Query: 951 RVYGVDGL-RVIDASIMPIIVSGNPNAPTIMIGEKGADMKQSYLD 994
+ D L +I++S+ + P A+ ++ +
Sbjct: 348 KHVNCDKLTTIIESSLNVL----EP-----------AEYRKMFDR 377
Score = 44.8 bits (105), Expect = 2e-04
Identities = 35/237 (14%), Positives = 65/237 (27%), Gaps = 65/237 (27%)
Query: 17 WMTLG---ILPVVMAALTVLRYNNMDPE-----SRPTNTK--TDKVTAAMLGIL--PVVM 64
W+ L V+ L L +DP +N K + A + +L
Sbjct: 186 WLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 65 AALTVLRYNNMDPESRPTNTKTLLRAYDF----IVIGAGSAGAVVANRLSENPDWKILLI 120
L VL N + + A++ ++ + V + LS I L
Sbjct: 245 NCLLVLL-NVQNAK--------AWNAFNLSCKILLT---TRFKQVTDFLSAATTTHISLD 292
Query: 121 E--AGGDENEISDIPSLAGYLQLSELDWKYKTEPPMGDSAYCLAMVGDRCNWPRGKVLGG 178
+E+ + L YL D P +VL
Sbjct: 293 HHSMTLTPDEVKSL--LLKYLDCRPQD-----LPR--------------------EVLTT 325
Query: 179 SSVLNAMI--YVRGNKNDYDQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHS 233
+ ++I +R +D W+ + + + S + R +
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHV-----NCDKLTTIIESSLNVLEPAEYRKMFDR 377
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 49.0 bits (116), Expect = 6e-06
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 64 MAALTVLRYNNMDPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
M L N ++ TN + + +D++++GAG AG+V+A RL+ + ++L+++
Sbjct: 3 MTDLPSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVDR 60
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 47.1 bits (111), Expect = 2e-05
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIE 121
+D V+G+G G +A R++ D ++L++E
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 44.7 bits (104), Expect = 1e-04
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 90 AYDFIVIGAGSAGAVVANRLSE-NPDWKILLIEAGGDENEISDIPSLAGYLQLSELDWKY 148
A+D +VIGAG GA A L + P +LL+E GG NE G ++
Sbjct: 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQ 95
Query: 149 KTE 151
+ +
Sbjct: 96 EAQ 98
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 43.5 bits (102), Expect = 2e-04
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
YD+I++G+G GAV AN L + + K+L+IE
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEK 32
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 43.1 bits (101), Expect = 3e-04
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
+++GAG +GAV+ +L+E ++ +I+
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQ 34
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 42.2 bits (98), Expect = 7e-04
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
D +VIGAG G A RL++ +++++ GG
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 41.3 bits (96), Expect = 0.001
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 91 YDFIVIGAGSAGAVVANRLSEN-PDWKILLIEA----GGDENEISDIPSLA-----GYLQ 140
D I++GAGS+G A +++N PD K+ +IE+ GG + S +L
Sbjct: 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLF 125
Query: 141 LSELDWKYKTEP 152
L EL+ Y+ E
Sbjct: 126 LQELEIPYEDEG 137
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 41.3 bits (97), Expect = 0.001
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 79 SRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
S + + +D++V+GAG G A L +L+++AG
Sbjct: 12 SGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 40.1 bits (93), Expect = 0.002
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
D +V+GAGSAG A +S+NP+ ++ +IE
Sbjct: 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 40.2 bits (94), Expect = 0.003
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEISDIPSLAGYLQLSELDWKYKT 150
YD ++IG G AG+ A +LS KILL+++ N I D P + + D
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSRR-GLKILLVDS-KPWNRIGDKPC-GDAVSKAHFDK---L 60
Query: 151 EPPMGDSAYCLAMV-GDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQW 198
P + G + P + + + + N Y+Q
Sbjct: 61 GMPYPKGEELENKINGIKLYSPDMQTVWTVNGEGFEL----NAPLYNQR 105
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 39.2 bits (92), Expect = 0.007
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 352
L+ + I E AL L+ ++ G V + I G +A+ ++++ GA
Sbjct: 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTALCI-ETGEVVYFKARATVLATGGA 205
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 39.2 bits (91), Expect = 0.007
Identities = 50/289 (17%), Positives = 85/289 (29%), Gaps = 86/289 (29%)
Query: 83 NTKTLLRAYDFIVIGAGSAG---AVVANR--LSENPDWKILLIE------AGGDENEISD 131
+ + D +++G G A A R P+ KILL++ +G +S
Sbjct: 15 EPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERSGAVAQGLSA 74
Query: 132 IPSLAGYLQLSELDWKYKTEPPMG----DSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIY 187
I + G ++ + MG D Y L ++ ++
Sbjct: 75 INTYLGD-NNADDYVRMVRTDLMGLVREDLIYDLG-----------------RHVDDSVH 116
Query: 188 VRGNKNDYDQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESPWHS 247
+E G LP + K E L + G L + P S
Sbjct: 117 ---------LFEEWG---------LPVWIKDEHGH--NLDGAQAKAAGKSLRNGDKPVRS 156
Query: 248 PLAAAFVKAGEELGYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIA 307
INGE + ++ I
Sbjct: 157 GRWQI-------------MINGE-----SYKV-IVAEAAK-----------NALGQDRII 186
Query: 308 METQALRLLFDKS--GPVPKAVGIEILRDGRKHIIRAKKEIISSAGAIN 354
++LL DK+ + AVG + R HI +A +++ GA+N
Sbjct: 187 ERIFIVKLLLDKNTPNRIAGAVGFNL-RANEVHIFKANAMVVACGGAVN 234
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 38.1 bits (89), Expect = 0.012
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125
YD +V+G G G+ A ++ K L+IE +
Sbjct: 5 YDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPE 38
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 38.2 bits (89), Expect = 0.013
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 94 IVIGAGSAGAVVANRLSE-NPDWKILLIEA 122
+V+G G+ GA A + +P ++ LIE
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 38.1 bits (89), Expect = 0.016
Identities = 41/279 (14%), Positives = 84/279 (30%), Gaps = 77/279 (27%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIE-----------AGGDENEISDIPSLAGYL 139
D +V G G AG + + +L++E AGG +
Sbjct: 42 ADVVVAGYGIAGVAASIEAARA-GADVLVLERTSGWGGATALAGGFIY----LGG----- 91
Query: 140 QLSELDWKYKTEPPMGDS-----AYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKND 194
+ DS + +A +G + + Y G+
Sbjct: 92 -----GTPLQKACGFDDSPENMKTFMMAALGPGADEEKITD-----------YCEGSVEH 135
Query: 195 YDQWERLGNPGWGYKDVLPYFKKSEDNRNEYLLRTPYHSKGGYLTVQESP--WHSPLAAA 252
Y+ G P +K+ E ++ L+ + + + + H P
Sbjct: 136 YNWLVDCGVP---FKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGHVPQMDG 192
Query: 253 FVKAGEELGYENRDINGERQTGFMIAQGTIRRGSRCSTSKAFLRPIRLRKNLHIAMETQA 312
GE+ G+M+ + L + + + +
Sbjct: 193 KRT-------------GEKGGGYMLMKP--------------LVETAEKLGVRAEYDMRV 225
Query: 313 LRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAG 351
L+ D +G V VGI + G++ +RA++ ++ + G
Sbjct: 226 QTLVTDDTGRV---VGIVAKQYGKEVAVRARRGVVLATG 261
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 37.9 bits (89), Expect = 0.019
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
+D I IG GS G VA + + ++ LIE+
Sbjct: 5 FDLIAIGGGSGGLAVAEKAAAF-GKRVALIESKA 37
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 37.4 bits (86), Expect = 0.022
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSE-NPDWKILLIEAG 123
D +++GAGS G A LS PD +I ++EAG
Sbjct: 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG 113
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 37.1 bits (87), Expect = 0.026
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125
D IVIGAG G +A L+ ++L+ EA
Sbjct: 5 IDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
PSI, protein structu initiative; 1.70A {Escherichia
coli} SCOP: c.1.18.3 PDB: 1t8q_A
Length = 356
Score = 36.9 bits (85), Expect = 0.032
Identities = 32/234 (13%), Positives = 65/234 (27%), Gaps = 20/234 (8%)
Query: 735 RYIRLQSKNPLHYPLIEPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYIRLQSKNPLHY 794
+ K YP P R + T E I ++ S I + K P +
Sbjct: 120 GFDIENGKKVQTYPGRFPMGKSDFR-VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFH 178
Query: 795 PLIEPNYFQHRRDIETLIEGIRIA-------FNVSASAAFQKYNSRPLLTPMPGCAMFEL 847
+ ++ F+ + + + + +L
Sbjct: 179 HQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELN---LVQL 235
Query: 848 FSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIV 907
+ W + + + + M P + V + DG+ ++
Sbjct: 236 IAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAE------YADGIGPDYHMLIEETS 289
Query: 908 SGNPNAPTIMIGE-KGADMTSR-YTIR-PALMGPATDLEAVVDPRLRVYGVDGL 958
T M+ + + + YT+R L D+ + D GV+GL
Sbjct: 290 QPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGL 343
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 36.7 bits (86), Expect = 0.043
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
YD VIG GS G + K+ + E
Sbjct: 6 YDLFVIGGGSGGVRSGRLAAAL-GKKVAIAEEFR 38
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 36.8 bits (84), Expect = 0.043
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
++IGAG G A RL+E L E GG
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 36.4 bits (85), Expect = 0.047
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
YD IVIG GS G A R + + + K+ L+E
Sbjct: 3 YDLIVIGGGSGGMAAARRAARH-NAKVALVEKSR 35
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 36.3 bits (85), Expect = 0.052
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
YD++VIG GS G A R + K LL+EA
Sbjct: 12 YDYLVIGGGSGGVASARRAASY-GAKTLLVEAKA 44
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 36.2 bits (82), Expect = 0.056
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 11/122 (9%)
Query: 94 IVIGAGSAGAVVANRLSE--NPDWKILLIEAGGDENEI---SDIPSLAGYLQLSELDWKY 148
+++G G+AG + A+ L + + L+E+G + ++ + LD
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDE-- 63
Query: 149 KTEPPMGDSAYCLAMVGDRCNWPRGKVLGGSSVLNAMIYVRGNKNDYDQWERLGNPGWGY 208
+ A + NW + + V N + W +G+ +
Sbjct: 64 --REWLPRCAGGYKLGIRFENW--SEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSF 119
Query: 209 KD 210
+
Sbjct: 120 SE 121
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 36.4 bits (84), Expect = 0.059
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
D +V+G G +G A L ++ ++++EA GG
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSG-LNVVVLEARDRVGG 41
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 36.3 bits (84), Expect = 0.059
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 81 PTNTKTLLRAYDFIVIGAGSAG---AVVANRLSENPDWKILLIE 121
T + D ++IG G +G A A ++ K+ L+E
Sbjct: 13 ADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
Score = 32.8 bits (75), Expect = 0.67
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 309 ETQALRLLFDKSGP--VPKAVGIEILRDGRKHIIRAKKEIISSAGA 352
LL D + P V AVG + R+ + ++ +AK I+++ GA
Sbjct: 173 RVFIFELLKDNNDPNAVAGAVGFSV-REPKFYVFKAKAVILATGGA 217
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 35.9 bits (82), Expect = 0.065
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 75 MDPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
M P + + A VIGAG +G A +L + + EA GG
Sbjct: 1 MAPSAGEDKHSS---AKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAGG 50
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 35.9 bits (83), Expect = 0.067
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
YD IV+G G +G A L+ K+LL+E GG
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGG 38
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 36.0 bits (83), Expect = 0.067
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 86 TLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
++ + +IGAG AG L + ++E GG
Sbjct: 2 SISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 35.9 bits (84), Expect = 0.068
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 79 SRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
P + +YD++VIG GS G A R +E + ++E+
Sbjct: 9 QGPPPAAGAVASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHK 53
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 35.5 bits (81), Expect = 0.086
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
I+IGAG AG A+ L +N L++EA GG
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 35.6 bits (83), Expect = 0.098
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
YD +VIGAGS G + ++ +I+
Sbjct: 4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL 35
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 35.5 bits (82), Expect = 0.11
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
D ++GAG +G A L + + +IEA GG
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGG 42
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 35.2 bits (82), Expect = 0.11
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
YD+I IG GS G NR + K LIEA
Sbjct: 5 YDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE 37
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 35.2 bits (82), Expect = 0.11
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
+D VIG+GS G A ++ + E
Sbjct: 27 FDLFVIGSGSGGVRAARLAGAL-GKRVAIAEEYR 59
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 35.0 bits (79), Expect = 0.12
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
+IG G AG A L+ ++ L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTAA-GHQVHLFDKS 34
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 35.1 bits (81), Expect = 0.12
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 75 MDPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
M E D +VIGAG AG V A+ ++++ +K+ ++E
Sbjct: 1 MQREK-----------VDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQ 37
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 35.2 bits (82), Expect = 0.12
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
+D +VIGAGS G + ++ +++
Sbjct: 8 FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV 39
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 35.2 bits (82), Expect = 0.13
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 93 FIVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
+++IG +AG A ++ + + ++ +E G
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 34.8 bits (81), Expect = 0.14
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 75 MDPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125
M ++ + + D +V+GAG +G RL E + +IE GD
Sbjct: 1 MAGQTTVDSRRQPPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGD 50
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 34.7 bits (80), Expect = 0.16
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 94 IVIGAGSAGAVVANRLSE-NPDWKILLIE 121
+VIG G G A L PD KI LI
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLIS 34
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 34.8 bits (81), Expect = 0.16
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 91 YDFIVIGAGSAGAVVANR 108
+D +VIG GS G A
Sbjct: 7 FDLLVIGGGSGGLACAKE 24
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 34.8 bits (81), Expect = 0.17
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 91 YDFIVIGAGSAGAVVANR 108
YD IVIG GSAG A
Sbjct: 10 YDLIVIGGGSAGLACAKE 27
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 34.7 bits (80), Expect = 0.18
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILR-DGRKHIIRAKKEIISSAGAINSPQL 358
+++ I + ++ +R+L D SG V G+ + ++I+A +I++ G + +
Sbjct: 266 VKRGTDIRLNSRVVRILEDASGKV---TGVLVKGEYTGYYVIKADAVVIAAGGFAKNNER 322
Query: 359 LM 360
+
Sbjct: 323 VS 324
Score = 31.6 bits (72), Expect = 1.7
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIE 121
D ++IG+G AG A + K++L+E
Sbjct: 127 TDVVIIGSGGAGLAAAVSARDA-GAKVILLE 156
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 34.5 bits (80), Expect = 0.19
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 93 FIVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
+V+G + GA VA RL + + +I+++E G
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 34.4 bits (80), Expect = 0.19
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 93 FIVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
++IGA AG A + P +I LI+
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQAT 38
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 34.4 bits (80), Expect = 0.20
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 94 IVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
+VIGA + G A R +P+ + +I+
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 34.4 bits (80), Expect = 0.21
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 94 IVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
IV+G AG + +++PD + E +
Sbjct: 4 IVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN 36
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 34.3 bits (79), Expect = 0.21
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 94 IVIGAGSAGAVVANRLSE--NPDWKILLIE 121
+++GAG+ G A + E ++ LI
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 34.5 bits (80), Expect = 0.21
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 91 YDFIVIGAGSAGAVVANR 108
YD I+IG GS G A
Sbjct: 33 YDLIIIGGGSGGLAAAKE 50
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 34.4 bits (80), Expect = 0.21
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 94 IVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
++IG G+AG A+R+ P+W + + EA
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 34.4 bits (80), Expect = 0.21
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 94 IVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
+V+GA + GA A+++ + + I++ E D
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 34.5 bits (80), Expect = 0.22
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 94 IVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
++IG + GA A R + +I++ E G
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 34.4 bits (80), Expect = 0.22
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 94 IVIGAGSAGAVVANRL-SENPDWKILLIEAGGD 125
IV+G+ G L + +PD +I E G
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 34.5 bits (80), Expect = 0.23
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 76 DPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125
+ T +YD +V+GAG AG +R + EA
Sbjct: 7 RSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASG 55
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 34.1 bits (78), Expect = 0.24
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
+D IVIG G G+ +A+ ++ ++LL+E
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMR-GHRVLLLERE 39
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.29
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 9/29 (31%)
Query: 1020 RNGVKK---------PSKLPAMSIKISAD 1039
+ +KK PA++IK + +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.9 bits (66), Expect = 2.4
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 11/36 (30%)
Query: 128 EISDIPSLAGYLQLSELDWKYKTEPPMGDSAYCLAM 163
E + L L+L Y DSA LA+
Sbjct: 18 EKQALKKLQASLKL------Y--AD---DSAPALAI 42
Score = 28.8 bits (63), Expect = 5.4
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 8/27 (29%)
Query: 942 LEAVVDPRLRVYGVD---GLRVIDASI 965
L+A L++Y D L I A++
Sbjct: 25 LQA----SLKLYADDSAPAL-AIKATM 46
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 33.7 bits (78), Expect = 0.31
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 84 TKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125
T D +VIGAG G ++L + +
Sbjct: 2 TAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 33.6 bits (75), Expect = 0.31
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 92 DFIVIGAGSAGAVVANRLSEN--PDWKILLIEAGGD 125
+++GAG G++ A L + + + D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD 38
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 33.9 bits (78), Expect = 0.34
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 91 YDFIVIGAGSAGAVVANRLSE 111
YD IVIG GS G ++
Sbjct: 108 YDLIVIGGGSGGLAAGKEAAK 128
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 33.4 bits (76), Expect = 0.38
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 77 PESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
+D IVIG G G L+ +K LL+EA GG
Sbjct: 26 SPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAG-FKTLLLEARDRIGG 76
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 33.1 bits (76), Expect = 0.42
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
YD I+IG+GS GA + +L+ +A
Sbjct: 3 YDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAH 34
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 33.5 bits (77), Expect = 0.42
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 77 PESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIE 121
E + D +V+G+G AG A +++ K++LIE
Sbjct: 113 SERQAALASAPHDTVDVVVVGSGGAGFSAAISATDS-GAKVILIE 156
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 33.4 bits (77), Expect = 0.44
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125
D++VIGAG AGA LS + ++++E
Sbjct: 10 ADYLVIGAGIAGASTGYWLSAHGR--VVVLEREAQ 42
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 31.3 bits (71), Expect = 0.44
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 94 IVIGAGSAGAVVANRLSENPDWKILLI 120
V+GAG G ++A L + ++ + +
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTVA 35
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 33.3 bits (76), Expect = 0.50
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 86 TLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
+ ++ +++GAG+ G A L+ + +++
Sbjct: 2 AVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY 39
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 32.8 bits (75), Expect = 0.57
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
+YD +V+G G G A +++E ++L++E
Sbjct: 3 ESYDVVVVGGGPVGLATAWQVAER-GHRVLVLERHT 37
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 32.9 bits (75), Expect = 0.62
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
IV+GAG +G A RLSE +L++EA GG
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 32.7 bits (74), Expect = 0.66
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 90 AYDFIVIGAGSAGAVVANRLSEN-PDWKILLIEAGG 124
+ +++G G G A PD I L+EAG
Sbjct: 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 32.9 bits (76), Expect = 0.67
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
VIG+G A A + E ++ LIE G
Sbjct: 5 VQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG 36
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 32.9 bits (74), Expect = 0.68
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
+ I+IG+G +G A +L + L+EA
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEA 138
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.6 bits (75), Expect = 0.71
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGGD 125
A D +VIGAG G A +++ K+L IEAG D
Sbjct: 8 PALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED 43
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 32.2 bits (74), Expect = 0.73
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 57 LGILPVVMAALTVLRYNNMDPESRPTNTKTLLRAYDFIVI--GAG-SAGAVVANRLSE 111
+ ++P A +++ +PE ++ + D +++ AG AV+A ++
Sbjct: 80 VKVVP---AGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGLERSAVIAIAAAQ 134
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 30.9 bits (71), Expect = 0.79
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 94 IVIGAGSAGAVVANRLSENPDWKI 117
++ GAGSAG +AN L + ++
Sbjct: 8 LIYGAGSAGLQLANMLRQGKEFHP 31
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 32.6 bits (73), Expect = 0.81
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
+ I+IG+G +G A +L + L+EA
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSF-GMDVTLLEA 309
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 32.3 bits (74), Expect = 0.87
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 352
LR + +E AL LL + G + + I DG H RAK +I++ G
Sbjct: 166 LRYDTSYFVEYFALDLLMEN-GECRGVIALCI-EDGTIHRFRAKNTVIATGGY 216
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 32.4 bits (74), Expect = 0.89
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 94 IVIGAGSAGAVVANRLSE--NPDWKILLIE 121
+V+G A L + +I
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVIN 34
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 32.2 bits (74), Expect = 0.89
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 76 DPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
+ + R Y+ +VIG G G+ +A L++ + L E+G
Sbjct: 3 HHHHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESG 49
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 31.6 bits (71), Expect = 1.3
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 94 IVIGAGSAGAVVANRLSE-NPDWKILLIEAGG 124
+V+G G +G + LS K++L+E+
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 31.8 bits (71), Expect = 1.4
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GGDENEISDIPSLAGYLQLSELDW 146
YD I++G G +++ LS KIL+++ GG+ ++ + +
Sbjct: 21 YDVIILGTGLKECILSGLLSHY-GKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPS 79
Query: 147 KYK 149
KY
Sbjct: 80 KYG 82
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 31.9 bits (73), Expect = 1.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 91 YDFIVIGAGSAGAVVANRLS 110
YD I IG G+AG + L
Sbjct: 44 YDAIFIGGGAAGRFGSAYLR 63
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 31.6 bits (72), Expect = 1.5
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 91 YDFIVIGAGSAGAVVANRL-SENPDWKILLIEAGGDENE 128
F++IG G+A A + + +P ++L++ ++ E
Sbjct: 12 VPFLLIGGGTAAFAAARSIRARDPGARVLIV---SEDPE 47
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 31.7 bits (71), Expect = 1.5
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 94 IVIGAGSAGAVVANRLSENPDWKILL 119
+++G+G V + L+ N D + +
Sbjct: 27 LLLGSGFVAQPVIDTLAANDDINVTV 52
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 31.4 bits (72), Expect = 1.5
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 79 SRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWK-ILLIEAG 123
++YD I++G G G A L++N + ++E G
Sbjct: 10 EFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 31.5 bits (72), Expect = 1.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
+D IV+GAGS G +L++ K LL++A
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFD 36
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 31.5 bits (71), Expect = 1.6
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
+IG G AG+V L + + + E
Sbjct: 24 SKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERS 55
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 31.7 bits (70), Expect = 1.6
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 94 IVIGAGSAGAVVANRLSE--NPDWKILLIE------AGGDENEISDIPS-LAGYLQLSEL 144
+++G G+AG + A+ L + I L++ G E I ++ + +L + E
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPED 88
Query: 145 DW 146
+W
Sbjct: 89 EW 90
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 31.4 bits (70), Expect = 1.9
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GGDENEISDIPSLAGYLQLSELDW 146
YD IV+G G +++ +S N K+L ++ GG+ + I+ + L QL E
Sbjct: 7 YDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPP 65
Query: 147 KY 148
+
Sbjct: 66 ET 67
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 31.4 bits (71), Expect = 1.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
++ +V+G G AG A L + +K+ ++EA GG
Sbjct: 10 GSHSVVVLGGGPAGLCSAFELQKA-GYKVTVLEARTRPGG 48
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 31.2 bits (71), Expect = 1.9
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIE----AGG 124
+V+GAGSAG + + ++L++ +GG
Sbjct: 122 TQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGG 158
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 31.1 bits (71), Expect = 2.0
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 300 LRKNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 352
L+ + I +A+ L+ G AV + L G AK +I++ G
Sbjct: 169 LKLGVSIQDRKEAIALIHQD-GKCYGAVVRD-LVTGDIIAYVAKGTLIATGGY 219
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 31.1 bits (70), Expect = 2.1
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 75 MDPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEAGG 124
MD + + V+G G +G VA+ L +L+E+
Sbjct: 1 MDHHHHHHHHMPRTTGMNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSA 49
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF
protein, center for structu genomics of infectious
diseases, immune system; 1.50A {Bacillus anthracis} PDB:
3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Length = 336
Score = 30.7 bits (70), Expect = 2.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 367 EEHLQGLNIPIIKNLSVGH 385
E LQ IP++ + H
Sbjct: 288 LEVLQNQRIPLLADFDCCH 306
Score = 30.7 bits (70), Expect = 2.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 489 EEHLQGLNIPIIKNLSVGH 507
E LQ IP++ + H
Sbjct: 288 LEVLQNQRIPLLADFDCCH 306
Score = 30.7 bits (70), Expect = 2.3
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 666 EEHLQGLNIPIIKNLSVGH 684
E LQ IP++ + H
Sbjct: 288 LEVLQNQRIPLLADFDCCH 306
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 30.7 bits (70), Expect = 2.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 367 EEHLQGLNIPIIKNLSVGH 385
+ +IPII N S GH
Sbjct: 284 ASKPELAHIPIIANASFGH 302
Score = 30.7 bits (70), Expect = 2.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 489 EEHLQGLNIPIIKNLSVGH 507
+ +IPII N S GH
Sbjct: 284 ASKPELAHIPIIANASFGH 302
Score = 30.7 bits (70), Expect = 2.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 666 EEHLQGLNIPIIKNLSVGH 684
+ +IPII N S GH
Sbjct: 284 ASKPELAHIPIIANASFGH 302
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 31.1 bits (71), Expect = 2.3
Identities = 9/30 (30%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLI 120
D ++IG+G+AG +A RL++ +++++
Sbjct: 9 CDVLIIGSGAAGLSLALRLADQH--QVIVL 36
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP
binding protein, PURP structural genomics, protein
structure initiative; HET: ATP; 2.50A {Thermococcus
kodakarensis} SCOP: c.30.1.8 d.142.1.9
Length = 320
Score = 30.7 bits (69), Expect = 2.4
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 888 RVYGVDGLRVIDASIMPIIVSGNPNA--------PTIMIGEKGADMTSRYTIRPALMGPA 939
RV DG +P + GN G T R P ++GP
Sbjct: 192 RVLIADGNARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVR-TMRELEPPGVIGPF 250
Query: 940 TDLEAVVDPRLRVYGV 955
L D + G+
Sbjct: 251 A-LHFAYDGSFKAIGI 265
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold,
catalytic triad, merops S66 unassigned peptidases
family; HET: MSE; 1.89A {Novosphingobium
aromaticivorans}
Length = 274
Score = 30.6 bits (69), Expect = 2.6
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 367 EEHLQGLNIPIIKNLSVGH 385
I + +GH
Sbjct: 244 RHWCHRAGIAFLGTADIGH 262
Score = 30.6 bits (69), Expect = 2.6
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 489 EEHLQGLNIPIIKNLSVGH 507
I + +GH
Sbjct: 244 RHWCHRAGIAFLGTADIGH 262
Score = 30.6 bits (69), Expect = 2.6
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 666 EEHLQGLNIPIIKNLSVGH 684
I + +GH
Sbjct: 244 RHWCHRAGIAFLGTADIGH 262
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 30.6 bits (69), Expect = 2.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 367 EEHLQGLNIPIIKNLSVGH 385
E L G IP++ H
Sbjct: 320 TEVLDGKQIPVLDGFDCSH 338
Score = 30.6 bits (69), Expect = 2.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 489 EEHLQGLNIPIIKNLSVGH 507
E L G IP++ H
Sbjct: 320 TEVLDGKQIPVLDGFDCSH 338
Score = 30.6 bits (69), Expect = 2.6
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 666 EEHLQGLNIPIIKNLSVGH 684
E L G IP++ H
Sbjct: 320 TEVLDGKQIPVLDGFDCSH 338
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 30.8 bits (68), Expect = 2.6
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 94 IVIGAGSAGAVVANRLSE--NPDWKILLIE 121
+++G G+AG + A+ L I LIE
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIE 38
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 30.8 bits (68), Expect = 2.6
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
Query: 94 IVIGAGSAGAVVANRLS-----------ENPDWKILLIE------AGGDENEISDIPSLA 136
I++G G+AG + A L+ +P I LIE G E + S
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTL 70
Query: 137 GYLQLSELDWKYKTEPP 153
+ + E D+ + +
Sbjct: 71 SKIGIDENDFIRQCDAS 87
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT
structure initiative, midwest center for structural
genomic unknown function; HET: TLA PEG; 1.10A
{Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB:
1zrs_A 2aum_A 2aun_A
Length = 311
Score = 30.4 bits (69), Expect = 3.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 367 EEHLQGLNIPIIKNLSVGH 385
E+ + +P+ +L GH
Sbjct: 269 GEYAAAIEVPLYHHLPSGH 287
Score = 30.4 bits (69), Expect = 3.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 489 EEHLQGLNIPIIKNLSVGH 507
E+ + +P+ +L GH
Sbjct: 269 GEYAAAIEVPLYHHLPSGH 287
Score = 30.4 bits (69), Expect = 3.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 666 EEHLQGLNIPIIKNLSVGH 684
E+ + +P+ +L GH
Sbjct: 269 GEYAAAIEVPLYHHLPSGH 287
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS,
GAP, signal transduction, cancer, growth regulation, GTP
hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Length = 333
Score = 30.1 bits (67), Expect = 3.8
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 702 PVTFKKERYQVLLCLSERTDDSTYSTYTNTLFPRYIRLQSKNPLHYPLIEPN-YFQHRRD 760
P + + + +S+R ++ + +F R+I +P +++ R
Sbjct: 161 PPQLRSVCHCLYQVVSQRFPQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPPIIER- 219
Query: 761 IETLIEGIRIAFNVSASAAFKKYIRLQSKNP 791
L +I +++ F K ++ N
Sbjct: 220 --GLKLMSKILQSIANHVLFTKEEHMRPFND 248
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 30.3 bits (68), Expect = 3.9
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 91 YDFIVIGAGSAGAVVANRLS-----ENPDWKILLIEAGG 124
++IG G G A + +N ++ L+EA
Sbjct: 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 29.8 bits (66), Expect = 4.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 74 NMDPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSEN 112
+MD E+ T+ YD IV+G G +++ LS +
Sbjct: 2 HMDQETIDTD-------YDVIVLGTGITECILSGLLSVD 33
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 29.8 bits (67), Expect = 6.1
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 91 YDFIVIGAGSAGAVVANRL-----SENPDWKILLIEAGGD 125
D +++GAG AG A RL D ++ L+E
Sbjct: 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 75
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 29.0 bits (66), Expect = 6.1
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 91 YDFIVIGAGSAG---AVVANRLSENPDWKILLIEAGG 124
+D IV+G G +G A+ R L+++ G
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLKV----LVLDGGR 34
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 29.6 bits (67), Expect = 6.2
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 302 KNLHIAMETQALRLLFDKSGPVPKAVGIEILRDGRKHIIRAKKEIISSAGA 352
+ E L +L D G V V + + +G IRA ++++ GA
Sbjct: 148 PQIQRFDEHFVLDILVDD-GHVRGLVAMN-MMEGTLVQIRANAVVMATGGA 196
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 29.1 bits (66), Expect = 6.5
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 88 LRAYDFIVIGAGSAG---AVVANRL 109
+ AY +++GAG +G A +
Sbjct: 1 MAAYQVLIVGAGFSGAETAFWLAQK 25
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.0 bits (65), Expect = 6.8
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 67 LTVLRYNNMDPESRPTNTKTLLRAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
L ++ + N +++G G G + L L IE
Sbjct: 20 LQETAAEKLNQRDQLINPGH----AQVLILGMGRIGTGAYDELRARYGKISLGIEI 71
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 29.4 bits (67), Expect = 7.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 75 MDPESRPTNTKTLLRAYDFIVIGAGSAG 102
M+ +++ R +D +++GAG+AG
Sbjct: 1 MEFNLHAVSSEEKERDFDVVIVGAGAAG 28
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 29.1 bits (66), Expect = 7.2
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEA 122
D ++ G G GA++A L +++++E
Sbjct: 7 IDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQ 37
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.4 bits (67), Expect = 7.6
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 91 YDFIVIGAGSAG---AVVANRLSENPDWKILLIEAG 123
YD IVIG G +G A+ A +LL++ G
Sbjct: 27 YDVIVIGGGPSGLMAAIGAAEEGA----NVLLLDKG 58
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 28.0 bits (63), Expect = 7.7
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 92 DFIVIGAGSAGAVVANRLSENPDWKILLIEAGGDENEISDI 132
++IVIG+ +AG + L+ K+L ++ + +I +
Sbjct: 8 EYIVIGSEAAGVGLVRELTAA-GKKVLAVDK--SKEKIELL 45
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 29.5 bits (67), Expect = 7.8
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 94 IVIGAGSAG-AVVANRLSENPD-WKILLIEAGGD 125
+V+GA AG A + L+ D +I++ + +
Sbjct: 39 VVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN 72
>3byw_A Putative arabinofuranosyltransferase; APC90585.2, extracellular
domain; HET: MSE; 2.35A {Corynebacterium diphtheriae
nctc 13129ORGANISM_TAXID}
Length = 177
Score = 28.4 bits (63), Expect = 8.3
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 905 IIVSGNPNAPTIMI-GEKGADMTSRYTIRPALMGPATDLEAVVDPRLRVYGVDGLRV 960
I +S + T I G+ T +RP +MG T+LE+ L GL
Sbjct: 105 IAISATEDETTAGIEGDDSTTETVERDVRPIIMGIYTELESNAAADL---LNAGLNA 158
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 29.1 bits (66), Expect = 8.3
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
+ +VIG G G +A+ L++ ++ +IE
Sbjct: 6 SEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKR 37
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 29.1 bits (65), Expect = 8.8
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 89 RAYDFIVIGAGSAGAVVANRLSENPDWKILLIEA----GG 124
+++GAG AG A L+ ++ ++EA GG
Sbjct: 32 NPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEASERPGG 70
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 29.1 bits (66), Expect = 9.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 91 YDFIVIGAGSAGAVVANRLSENPDWKILLIEAG 123
D +IG G+AG ++ D K++LIE G
Sbjct: 9 VDVAIIGTGTAGMGAYRAAKKHTD-KVVLIEGG 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.414
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,610,457
Number of extensions: 1076646
Number of successful extensions: 2780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2617
Number of HSP's successfully gapped: 214
Length of query: 1049
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 946
Effective length of database: 3,825,930
Effective search space: 3619329780
Effective search space used: 3619329780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)