BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4105
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKT 100
DF V +GGGSAG+VVASRLSEV W VLL+EAG DE +PS+ S D++Y T
Sbjct: 66 DFIV-IGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124
Query: 101 EPTGKQC 107
EP C
Sbjct: 125 EPEPMAC 131
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/67 (53%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKT 100
DF V +GGGSAG+VVASRLSEV W VLL+EAG DE +PS+ S D++Y T
Sbjct: 66 DFIV-IGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYNT 124
Query: 101 EPTGKQC 107
EP C
Sbjct: 125 EPERMAC 131
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
V +G GSAGAVVASRLS +V+ LEAGP D+N VP+ + L S+ DW Y TEP
Sbjct: 8 VVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDWDYLTEP 67
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
V +G GSAGAVVASRLS +V+ LEAGP D+N VP+ + L S+ DW Y TEP
Sbjct: 8 VVVGTGSAGAVVASRLSTDPATTVVALEAGPRDKNRFIGVPAAFSKLFRSEIDWDYLTEP 67
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEAG + + T +P +LA LQ +++W YK
Sbjct: 10 IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYK 69
Query: 100 TEP 102
T+P
Sbjct: 70 TDP 72
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEAG + + T +P +LA LQ +++W YK
Sbjct: 10 IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYK 69
Query: 100 TEP 102
T+P
Sbjct: 70 TDP 72
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEAG + + T +P+ A+ LQ +++W Y
Sbjct: 9 IIIGAGSAGNVLAARLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAYPLQGRRYNWAYL 68
Query: 100 TEP 102
TEP
Sbjct: 69 TEP 71
>sp|Q13NG7|BETA_BURXL Choline dehydrogenase OS=Burkholderia xenovorans (strain LB400)
GN=betA PE=3 SV=1
Length = 561
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+ASRL+E A +VLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 9 IIVGAGSAGNVLASRLAEDADVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYNWAYE 68
Query: 100 TEP 102
T+P
Sbjct: 69 TDP 71
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 8 IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYE 67
Query: 100 TEP 102
T+P
Sbjct: 68 TDP 70
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDSDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPD--ENEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRMDFRTQMPAALAFPLQGRRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+ASRL+E A +VLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 9 IIVGAGSAGNVLASRLTEDADVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYE 68
Query: 100 TEP 102
T+P
Sbjct: 69 TDP 71
>sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7)
GN=betA PE=3 SV=1
Length = 561
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 8 IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYE 67
Query: 100 TEP 102
T+P
Sbjct: 68 TDP 70
>sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1
Length = 561
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 8 IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYE 67
Query: 100 TEP 102
T+P
Sbjct: 68 TDP 70
>sp|Q02DZ0|BETA_PSEAB Choline dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=betA PE=3 SV=1
Length = 561
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 8 IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYE 67
Query: 100 TEP 102
T+P
Sbjct: 68 TDP 70
>sp|B7V5R3|BETA_PSEA8 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58)
GN=betA PE=3 SV=1
Length = 561
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A SVLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 8 IIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYE 67
Query: 100 TEP 102
T+P
Sbjct: 68 TDP 70
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPD--ENEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDSDTTVLLLEAGGPDYRADFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|B5Y008|BETA_KLEP3 Choline dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betA
PE=3 SV=1
Length = 554
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAYPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + SVLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|Q9AJD6|PNO_MICLT Pyridoxine 4-oxidase OS=Microbacterium luteolum GN=pno PE=1 SV=3
Length = 507
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAG--PDENEVTDVPSLAAWLQLSKFDWQYKTEP 102
+G GSAGA++A+RLSE +VLL+EAG P + ++ PS+ +Q +DW YKT P
Sbjct: 9 IGAGSAGALIAARLSEDPARNVLLIEAGGRPSDPDILK-PSMWPAIQHRSYDWDYKTTP 66
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E +VLLLEAG + V T +P+ A+ LQ +++W Y+
Sbjct: 8 IIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRVDFRTQMPAALAFPLQGRRYNWAYE 67
Query: 100 TEP 102
TEP
Sbjct: 68 TEP 70
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A +VLLLEA GPD + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A +VLLLEAG + + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|A7FKL6|BETA_YERP3 Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=betA PE=3 SV=1
Length = 567
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A +VLLLEAG + + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEA-GPDE--NEVTDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E + +VLLLEA GPD + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLATRLTEDPNTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
TEP
Sbjct: 66 TEP 68
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A +VLLLEAG + + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A +VLLLEAG + + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=betA PE=3 SV=1
Length = 567
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVPSLAAW-LQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A +VLLLEAG + + T +P+ A+ LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A +VLLLEAG + + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E A +VLLLEAG + + T +P +LA LQ +++W Y+
Sbjct: 6 IIIGAGSAGNVLAARLTEDADVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRYNWAYE 65
Query: 100 TEP 102
T+P
Sbjct: 66 TDP 68
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV---TDVP-SLAAWLQLSKFDWQYK 99
+ +G GSAG V+A+RL+E SVLLLEAG + + T +P +LA LQ +++W Y+
Sbjct: 8 IIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYE 67
Query: 100 TEP 102
TEP
Sbjct: 68 TEP 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,269,057
Number of Sequences: 539616
Number of extensions: 1686691
Number of successful extensions: 2852
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 153
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)