Query psy4105
Match_columns 107
No_of_seqs 182 out of 1536
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:07:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 99.7 3.4E-17 7.3E-22 139.0 4.9 71 36-107 54-124 (623)
2 PRK02106 choline dehydrogenase 99.3 2.8E-12 6.1E-17 106.8 7.2 69 37-106 3-75 (560)
3 PF00732 GMC_oxred_N: GMC oxid 99.3 5.8E-12 1.3E-16 95.8 6.1 65 40-105 1-66 (296)
4 TIGR01810 betA choline dehydro 99.3 9E-12 2E-16 103.1 6.3 65 41-106 1-69 (532)
5 COG2303 BetA Choline dehydroge 99.2 2.3E-11 5E-16 101.9 6.2 68 36-105 4-73 (542)
6 PLN02785 Protein HOTHEAD 99.0 4.6E-10 9.9E-15 95.1 6.0 65 37-105 53-117 (587)
7 COG0644 FixC Dehydrogenases (f 98.3 1E-06 2.3E-11 70.5 5.0 37 38-76 2-38 (396)
8 PRK10015 oxidoreductase; Provi 98.2 3.2E-06 6.9E-11 68.8 5.4 37 38-76 4-40 (429)
9 PRK07364 2-octaprenyl-6-methox 98.2 4E-06 8.7E-11 66.4 5.7 42 33-76 12-53 (415)
10 PRK10157 putative oxidoreducta 98.2 3.4E-06 7.5E-11 68.4 5.4 37 38-76 4-40 (428)
11 PF01494 FAD_binding_3: FAD bi 98.1 5.3E-06 1.1E-10 62.7 5.0 37 39-77 1-37 (356)
12 TIGR02032 GG-red-SF geranylger 98.1 5.3E-06 1.1E-10 61.7 4.9 35 40-76 1-35 (295)
13 PRK11259 solA N-methyltryptoph 98.0 7.5E-06 1.6E-10 63.8 4.9 36 38-75 2-37 (376)
14 PF01266 DAO: FAD dependent ox 98.0 9.2E-06 2E-10 61.4 4.8 33 41-75 1-33 (358)
15 PLN00093 geranylgeranyl diphos 98.0 1.3E-05 2.8E-10 66.0 5.7 38 35-74 35-72 (450)
16 PRK09126 hypothetical protein; 98.0 1.1E-05 2.4E-10 63.4 4.9 36 38-75 2-37 (392)
17 TIGR02023 BchP-ChlP geranylger 98.0 9.5E-06 2E-10 64.5 4.5 32 40-73 1-32 (388)
18 PF13450 NAD_binding_8: NAD(P) 98.0 1.5E-05 3.2E-10 49.9 4.5 31 45-76 1-31 (68)
19 PRK08020 ubiF 2-octaprenyl-3-m 98.0 1.2E-05 2.6E-10 63.3 4.8 36 37-74 3-38 (391)
20 TIGR01373 soxB sarcosine oxida 97.9 1.6E-05 3.4E-10 63.1 5.4 41 33-74 24-65 (407)
21 PRK07494 2-octaprenyl-6-methox 97.9 1.4E-05 3.1E-10 62.8 5.0 37 37-75 5-41 (388)
22 TIGR01377 soxA_mon sarcosine o 97.9 1.2E-05 2.7E-10 62.6 4.6 34 40-75 1-34 (380)
23 PRK08010 pyridine nucleotide-d 97.9 1.4E-05 3.1E-10 64.6 4.9 35 38-74 2-36 (441)
24 TIGR00292 thiazole biosynthesi 97.9 1.5E-05 3.3E-10 61.2 4.8 36 38-75 20-55 (254)
25 PRK04176 ribulose-1,5-biphosph 97.9 1.6E-05 3.5E-10 61.0 4.8 36 38-75 24-59 (257)
26 PRK07608 ubiquinone biosynthes 97.9 1.7E-05 3.6E-10 62.2 5.0 36 39-76 5-40 (388)
27 PLN02463 lycopene beta cyclase 97.9 2.5E-05 5.4E-10 64.5 6.2 38 36-75 25-62 (447)
28 PRK08013 oxidoreductase; Provi 97.9 1.7E-05 3.6E-10 63.3 5.0 36 38-75 2-37 (400)
29 PF05834 Lycopene_cycl: Lycope 97.9 1.3E-05 2.9E-10 63.9 4.4 35 41-76 1-36 (374)
30 PRK07251 pyridine nucleotide-d 97.9 1.8E-05 3.8E-10 64.0 5.0 35 38-74 2-36 (438)
31 PF01946 Thi4: Thi4 family; PD 97.9 1.4E-05 3E-10 61.5 4.0 36 38-75 16-51 (230)
32 PRK12266 glpD glycerol-3-phosp 97.9 1.9E-05 4E-10 65.7 5.0 37 37-75 4-40 (508)
33 PRK07045 putative monooxygenas 97.9 2E-05 4.3E-10 62.2 4.9 38 37-76 3-40 (388)
34 PF03486 HI0933_like: HI0933-l 97.9 1.6E-05 3.5E-10 65.1 4.5 35 40-76 1-35 (409)
35 PRK13369 glycerol-3-phosphate 97.9 2E-05 4.4E-10 65.2 5.1 37 37-75 4-40 (502)
36 PRK08773 2-octaprenyl-3-methyl 97.9 2.1E-05 4.6E-10 62.1 5.0 37 37-75 4-40 (392)
37 PLN02697 lycopene epsilon cycl 97.9 3E-05 6.4E-10 65.5 6.0 36 37-74 106-141 (529)
38 PRK08274 tricarballylate dehyd 97.9 2.1E-05 4.6E-10 63.8 5.0 35 38-74 3-37 (466)
39 PRK08849 2-octaprenyl-3-methyl 97.9 2.2E-05 4.7E-10 62.2 4.9 34 39-74 3-36 (384)
40 PF00890 FAD_binding_2: FAD bi 97.9 2E-05 4.3E-10 62.7 4.6 33 41-75 1-33 (417)
41 PRK07333 2-octaprenyl-6-methox 97.9 1.9E-05 4.2E-10 62.1 4.4 36 39-75 1-37 (403)
42 PRK05732 2-octaprenyl-6-methox 97.8 2.2E-05 4.8E-10 61.5 4.6 35 38-73 2-38 (395)
43 PRK12409 D-amino acid dehydrog 97.8 2.4E-05 5.2E-10 62.2 4.8 33 40-74 2-34 (410)
44 PRK06370 mercuric reductase; V 97.8 2.8E-05 6.1E-10 63.3 5.1 37 37-75 3-39 (463)
45 COG2081 Predicted flavoprotein 97.8 2.5E-05 5.5E-10 64.3 4.8 36 38-75 2-37 (408)
46 TIGR01790 carotene-cycl lycope 97.8 2.6E-05 5.7E-10 61.3 4.7 33 41-75 1-33 (388)
47 PRK11728 hydroxyglutarate oxid 97.8 2.6E-05 5.7E-10 61.9 4.7 35 39-74 2-37 (393)
48 COG1233 Phytoene dehydrogenase 97.8 2.5E-05 5.4E-10 64.7 4.7 36 38-75 2-37 (487)
49 PRK05714 2-octaprenyl-3-methyl 97.8 2.6E-05 5.6E-10 61.9 4.6 34 39-74 2-35 (405)
50 PRK05249 soluble pyridine nucl 97.8 3.1E-05 6.7E-10 62.7 5.1 36 37-74 3-38 (461)
51 TIGR03364 HpnW_proposed FAD de 97.8 2.9E-05 6.3E-10 60.6 4.8 34 40-75 1-34 (365)
52 PRK06116 glutathione reductase 97.8 3E-05 6.6E-10 62.8 5.0 35 38-74 3-37 (450)
53 PRK06185 hypothetical protein; 97.8 3E-05 6.5E-10 61.4 4.8 36 38-75 5-40 (407)
54 TIGR02028 ChlP geranylgeranyl 97.8 2.8E-05 6E-10 62.5 4.5 33 40-74 1-33 (398)
55 PRK06115 dihydrolipoamide dehy 97.8 3.4E-05 7.3E-10 63.2 4.9 33 38-72 2-34 (466)
56 TIGR03329 Phn_aa_oxid putative 97.8 3.4E-05 7.4E-10 62.9 4.9 38 37-75 22-60 (460)
57 PRK06292 dihydrolipoamide dehy 97.8 3.7E-05 8.1E-10 62.3 5.0 35 38-74 2-36 (460)
58 TIGR01988 Ubi-OHases Ubiquinon 97.8 3.4E-05 7.4E-10 59.9 4.6 34 41-76 1-34 (385)
59 COG0562 Glf UDP-galactopyranos 97.8 3.4E-05 7.3E-10 62.6 4.5 35 39-75 1-35 (374)
60 PTZ00363 rab-GDP dissociation 97.8 3.5E-05 7.7E-10 63.7 4.7 38 37-76 2-39 (443)
61 TIGR00031 UDP-GALP_mutase UDP- 97.8 3.8E-05 8.1E-10 62.5 4.8 35 39-75 1-35 (377)
62 PRK11101 glpA sn-glycerol-3-ph 97.8 4.2E-05 9.2E-10 64.2 5.2 36 38-75 5-40 (546)
63 TIGR01421 gluta_reduc_1 glutat 97.8 3.5E-05 7.6E-10 63.0 4.6 35 39-75 2-36 (450)
64 TIGR01292 TRX_reduct thioredox 97.7 4.1E-05 9E-10 57.3 4.5 33 40-74 1-33 (300)
65 PRK11445 putative oxidoreducta 97.7 3.5E-05 7.7E-10 60.6 4.3 34 39-75 1-34 (351)
66 PF12831 FAD_oxidored: FAD dep 97.7 3.8E-05 8.3E-10 62.4 4.5 34 41-76 1-34 (428)
67 TIGR01789 lycopene_cycl lycope 97.7 4.2E-05 9.2E-10 61.2 4.6 33 41-74 1-34 (370)
68 PRK05257 malate:quinone oxidor 97.7 4.5E-05 9.8E-10 63.6 4.8 37 37-74 3-40 (494)
69 PRK08850 2-octaprenyl-6-methox 97.7 4.8E-05 1E-09 60.6 4.8 34 38-73 3-36 (405)
70 PRK07121 hypothetical protein; 97.7 6.1E-05 1.3E-09 61.9 5.5 36 38-75 19-54 (492)
71 TIGR01424 gluta_reduc_2 glutat 97.7 4E-05 8.8E-10 62.3 4.4 34 39-74 2-35 (446)
72 TIGR01320 mal_quin_oxido malat 97.7 4.3E-05 9.3E-10 63.5 4.6 34 40-74 1-35 (483)
73 COG0665 DadA Glycine/D-amino a 97.7 5.8E-05 1.3E-09 58.8 5.0 37 37-75 2-38 (387)
74 PRK07208 hypothetical protein; 97.7 5.4E-05 1.2E-09 61.4 5.0 37 37-75 2-38 (479)
75 TIGR01984 UbiH 2-polyprenyl-6- 97.7 5E-05 1.1E-09 59.4 4.5 34 41-76 1-35 (382)
76 PRK05976 dihydrolipoamide dehy 97.7 5.6E-05 1.2E-09 61.8 4.9 36 38-75 3-38 (472)
77 PRK07818 dihydrolipoamide dehy 97.7 5.6E-05 1.2E-09 61.7 4.9 35 38-74 3-37 (466)
78 PRK06996 hypothetical protein; 97.7 5.8E-05 1.3E-09 60.2 4.8 41 34-75 6-49 (398)
79 PLN02268 probable polyamine ox 97.7 5.7E-05 1.2E-09 60.6 4.8 34 41-76 2-35 (435)
80 PRK06416 dihydrolipoamide dehy 97.7 5.2E-05 1.1E-09 61.5 4.6 35 38-74 3-37 (462)
81 PRK06184 hypothetical protein; 97.7 6.4E-05 1.4E-09 61.8 5.1 37 38-76 2-38 (502)
82 COG1635 THI4 Ribulose 1,5-bisp 97.7 4.2E-05 9E-10 59.5 3.7 35 39-75 30-64 (262)
83 TIGR01350 lipoamide_DH dihydro 97.7 5.4E-05 1.2E-09 61.2 4.5 34 39-74 1-34 (461)
84 PTZ00383 malate:quinone oxidor 97.7 8.4E-05 1.8E-09 62.3 5.8 39 35-74 41-80 (497)
85 TIGR01989 COQ6 Ubiquinone bios 97.7 5.7E-05 1.2E-09 61.2 4.6 34 40-74 1-37 (437)
86 PRK06481 fumarate reductase fl 97.7 6.6E-05 1.4E-09 62.3 5.1 38 36-75 58-95 (506)
87 KOG0029|consensus 97.7 6.3E-05 1.4E-09 63.2 5.0 39 36-76 12-50 (501)
88 PRK06467 dihydrolipoamide dehy 97.7 6.7E-05 1.5E-09 61.6 4.9 35 38-74 3-37 (471)
89 PLN02985 squalene monooxygenas 97.7 7.5E-05 1.6E-09 62.5 5.3 38 36-75 40-77 (514)
90 PRK06617 2-octaprenyl-6-methox 97.7 6.2E-05 1.3E-09 59.5 4.5 34 39-74 1-34 (374)
91 PLN02464 glycerol-3-phosphate 97.7 6.7E-05 1.5E-09 64.2 5.0 38 37-76 69-106 (627)
92 TIGR02053 MerA mercuric reduct 97.6 6.9E-05 1.5E-09 60.9 4.7 34 40-75 1-34 (463)
93 PRK08244 hypothetical protein; 97.6 7.9E-05 1.7E-09 61.0 4.9 36 39-76 2-37 (493)
94 TIGR02730 carot_isom carotene 97.6 6.9E-05 1.5E-09 61.6 4.6 35 40-76 1-35 (493)
95 PRK06847 hypothetical protein; 97.6 8.9E-05 1.9E-09 57.8 5.0 35 39-75 4-38 (375)
96 PRK07236 hypothetical protein; 97.6 8.2E-05 1.8E-09 58.9 4.8 36 38-75 5-40 (386)
97 PRK06753 hypothetical protein; 97.6 7.7E-05 1.7E-09 58.3 4.6 34 41-76 2-35 (373)
98 TIGR03143 AhpF_homolog putativ 97.6 7.9E-05 1.7E-09 62.6 4.9 36 38-75 3-38 (555)
99 TIGR00562 proto_IX_ox protopor 97.6 7.4E-05 1.6E-09 60.1 4.6 35 40-75 3-40 (462)
100 PTZ00139 Succinate dehydrogena 97.6 8.2E-05 1.8E-09 63.5 5.0 39 36-76 26-64 (617)
101 COG0654 UbiH 2-polyprenyl-6-me 97.6 7.5E-05 1.6E-09 59.5 4.5 33 39-73 2-34 (387)
102 PRK07190 hypothetical protein; 97.6 9.1E-05 2E-09 61.4 5.1 38 37-76 3-40 (487)
103 PRK11883 protoporphyrinogen ox 97.6 7.9E-05 1.7E-09 59.3 4.6 34 41-75 2-36 (451)
104 PLN02661 Putative thiazole syn 97.6 7.4E-05 1.6E-09 60.7 4.4 36 39-75 92-127 (357)
105 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 8.9E-05 1.9E-09 59.2 4.7 35 39-75 2-36 (390)
106 PRK08243 4-hydroxybenzoate 3-m 97.6 8.8E-05 1.9E-09 58.9 4.7 35 39-75 2-36 (392)
107 PLN02576 protoporphyrinogen ox 97.6 9.6E-05 2.1E-09 60.2 5.0 37 38-75 11-47 (496)
108 PRK12837 3-ketosteroid-delta-1 97.6 8.5E-05 1.8E-09 61.8 4.6 35 38-75 6-40 (513)
109 PRK14694 putative mercuric red 97.6 0.0001 2.2E-09 60.3 5.0 37 37-75 4-40 (468)
110 PRK07057 sdhA succinate dehydr 97.6 9.6E-05 2.1E-09 62.7 5.0 40 34-75 7-46 (591)
111 PRK08163 salicylate hydroxylas 97.6 0.0001 2.3E-09 58.0 4.8 35 39-75 4-38 (396)
112 PRK05192 tRNA uridine 5-carbox 97.6 8.6E-05 1.9E-09 64.0 4.6 35 38-74 3-37 (618)
113 PRK06126 hypothetical protein; 97.6 0.00012 2.5E-09 60.8 5.2 38 36-75 4-41 (545)
114 PRK07588 hypothetical protein; 97.6 0.0001 2.2E-09 58.3 4.6 34 41-76 2-35 (391)
115 PRK12834 putative FAD-binding 97.6 0.00011 2.3E-09 61.6 5.0 35 38-74 3-37 (549)
116 TIGR01813 flavo_cyto_c flavocy 97.6 9.3E-05 2E-09 59.6 4.5 33 41-75 1-34 (439)
117 PTZ00367 squalene epoxidase; P 97.6 0.00012 2.6E-09 62.2 5.1 37 36-74 30-66 (567)
118 PRK13748 putative mercuric red 97.6 0.00011 2.3E-09 61.1 4.6 35 38-74 97-131 (561)
119 PF07992 Pyr_redox_2: Pyridine 97.6 0.00016 3.4E-09 51.4 4.9 32 41-74 1-32 (201)
120 PTZ00058 glutathione reductase 97.6 0.00014 3.1E-09 61.7 5.4 36 38-75 47-82 (561)
121 PRK06834 hypothetical protein; 97.5 0.00012 2.6E-09 60.7 4.9 36 38-75 2-37 (488)
122 PRK00711 D-amino acid dehydrog 97.5 0.00012 2.5E-09 58.1 4.6 32 41-74 2-33 (416)
123 PF13738 Pyr_redox_3: Pyridine 97.5 0.00012 2.6E-09 52.2 4.3 31 45-76 2-33 (203)
124 PRK01747 mnmC bifunctional tRN 97.5 0.00011 2.4E-09 62.7 4.7 34 39-74 260-293 (662)
125 PRK13339 malate:quinone oxidor 97.5 0.00011 2.4E-09 61.7 4.5 34 38-72 5-39 (497)
126 TIGR02462 pyranose_ox pyranose 97.5 0.00012 2.5E-09 62.3 4.7 36 40-77 1-36 (544)
127 PRK05945 sdhA succinate dehydr 97.5 0.00012 2.7E-09 61.7 4.8 37 38-75 2-39 (575)
128 PRK07233 hypothetical protein; 97.5 0.00013 2.8E-09 57.5 4.6 34 41-76 1-34 (434)
129 PTZ00052 thioredoxin reductase 97.5 0.00014 3E-09 60.4 4.8 32 39-72 5-36 (499)
130 PRK09078 sdhA succinate dehydr 97.5 0.00014 3.1E-09 61.8 4.9 38 36-75 9-46 (598)
131 COG0579 Predicted dehydrogenas 97.5 0.00014 2.9E-09 60.4 4.6 37 38-75 2-39 (429)
132 TIGR02733 desat_CrtD C-3',4' d 97.5 0.00014 3.1E-09 59.5 4.6 35 40-76 2-36 (492)
133 PRK07804 L-aspartate oxidase; 97.5 0.00014 3.1E-09 60.9 4.7 38 37-76 14-51 (541)
134 PRK08275 putative oxidoreducta 97.5 0.00014 3.1E-09 60.9 4.7 37 38-75 8-45 (554)
135 PRK08401 L-aspartate oxidase; 97.5 0.00015 3.3E-09 59.5 4.7 34 40-75 2-35 (466)
136 PRK08641 sdhA succinate dehydr 97.5 0.00015 3.3E-09 61.5 4.7 36 38-75 2-37 (589)
137 PLN02815 L-aspartate oxidase 97.5 0.00021 4.6E-09 61.0 5.6 41 33-76 23-63 (594)
138 PRK07803 sdhA succinate dehydr 97.5 0.00016 3.5E-09 61.8 4.8 36 38-75 7-42 (626)
139 PRK06183 mhpA 3-(3-hydroxyphen 97.5 0.00018 3.9E-09 59.8 4.9 38 37-76 8-45 (538)
140 PRK07538 hypothetical protein; 97.5 0.00016 3.5E-09 57.8 4.5 33 41-75 2-34 (413)
141 TIGR02734 crtI_fam phytoene de 97.5 0.00014 3.1E-09 59.4 4.2 31 43-75 2-32 (502)
142 PRK06327 dihydrolipoamide dehy 97.5 0.00018 3.9E-09 59.0 4.7 33 38-72 3-35 (475)
143 PRK06452 sdhA succinate dehydr 97.5 0.00018 3.8E-09 60.8 4.8 36 38-75 4-39 (566)
144 PRK08132 FAD-dependent oxidore 97.5 0.00023 5E-09 59.2 5.4 37 37-75 21-57 (547)
145 PRK12842 putative succinate de 97.4 0.00019 4.2E-09 60.4 4.9 36 38-75 8-43 (574)
146 TIGR01423 trypano_reduc trypan 97.4 0.00019 4.1E-09 59.7 4.8 35 38-73 2-36 (486)
147 PRK08958 sdhA succinate dehydr 97.4 0.00021 4.5E-09 60.7 4.9 37 38-76 6-42 (588)
148 PRK10262 thioredoxin reductase 97.4 0.00022 4.7E-09 55.1 4.5 35 37-73 4-38 (321)
149 PRK12835 3-ketosteroid-delta-1 97.4 0.00021 4.5E-09 60.6 4.8 36 38-75 10-45 (584)
150 PTZ00153 lipoamide dehydrogena 97.4 0.00031 6.7E-09 60.8 5.8 34 38-73 115-148 (659)
151 COG0492 TrxB Thioredoxin reduc 97.4 0.00026 5.6E-09 56.1 4.8 36 38-75 2-38 (305)
152 COG1249 Lpd Pyruvate/2-oxoglut 97.4 0.00022 4.7E-09 59.4 4.6 47 37-85 2-52 (454)
153 PRK06175 L-aspartate oxidase; 97.4 0.00017 3.7E-09 58.9 3.9 36 38-76 3-38 (433)
154 PLN02507 glutathione reductase 97.4 0.0002 4.4E-09 59.5 4.4 34 37-72 23-56 (499)
155 TIGR01812 sdhA_frdA_Gneg succi 97.4 0.00021 4.5E-09 59.8 4.5 33 41-75 1-33 (566)
156 PRK06854 adenylylsulfate reduc 97.4 0.00021 4.6E-09 60.9 4.5 37 38-75 10-47 (608)
157 PRK07843 3-ketosteroid-delta-1 97.4 0.00029 6.2E-09 59.3 5.2 38 36-75 4-41 (557)
158 PRK12416 protoporphyrinogen ox 97.4 0.00025 5.4E-09 57.4 4.6 34 41-75 3-41 (463)
159 PRK06069 sdhA succinate dehydr 97.4 0.00024 5.3E-09 59.9 4.6 37 38-75 4-42 (577)
160 PRK08294 phenol 2-monooxygenas 97.4 0.00028 6E-09 60.5 4.9 39 37-76 30-68 (634)
161 PRK05868 hypothetical protein; 97.3 0.00031 6.8E-09 55.8 4.8 35 40-76 2-36 (372)
162 PLN00128 Succinate dehydrogena 97.3 0.00026 5.6E-09 60.8 4.5 36 38-75 49-84 (635)
163 PRK06263 sdhA succinate dehydr 97.3 0.00025 5.4E-09 59.3 4.2 35 38-75 6-40 (543)
164 PRK07573 sdhA succinate dehydr 97.3 0.00031 6.6E-09 60.3 4.8 35 38-74 34-68 (640)
165 PRK08626 fumarate reductase fl 97.3 0.00028 6.2E-09 60.8 4.6 37 38-76 4-40 (657)
166 PRK09231 fumarate reductase fl 97.3 0.0003 6.5E-09 59.6 4.6 37 38-75 3-40 (582)
167 PRK12844 3-ketosteroid-delta-1 97.3 0.00033 7E-09 59.1 4.8 36 38-75 5-40 (557)
168 PRK07395 L-aspartate oxidase; 97.3 0.00029 6.2E-09 59.5 4.2 36 37-75 7-42 (553)
169 PLN02546 glutathione reductase 97.3 0.00033 7.1E-09 59.4 4.5 32 39-72 79-110 (558)
170 KOG1298|consensus 97.3 0.00031 6.7E-09 58.5 4.1 39 36-76 42-80 (509)
171 PRK08205 sdhA succinate dehydr 97.3 0.00034 7.4E-09 59.2 4.5 35 38-75 4-38 (583)
172 PRK06475 salicylate hydroxylas 97.3 0.0004 8.6E-09 55.3 4.6 34 40-75 3-36 (400)
173 TIGR03219 salicylate_mono sali 97.3 0.00039 8.5E-09 55.5 4.5 35 41-76 2-36 (414)
174 PRK14727 putative mercuric red 97.3 0.00044 9.6E-09 56.9 4.9 35 38-74 15-49 (479)
175 PLN02568 polyamine oxidase 97.3 0.00051 1.1E-08 58.0 5.3 38 38-76 4-45 (539)
176 KOG2415|consensus 97.2 0.00034 7.3E-09 59.0 3.9 37 38-75 75-116 (621)
177 PLN02172 flavin-containing mon 97.2 0.0006 1.3E-08 56.5 5.3 37 38-76 9-45 (461)
178 PRK08071 L-aspartate oxidase; 97.2 0.00041 8.8E-09 57.9 4.3 35 39-76 3-37 (510)
179 PRK05329 anaerobic glycerol-3- 97.2 0.00048 1E-08 56.8 4.6 34 39-74 2-35 (422)
180 TIGR02731 phytoene_desat phyto 97.2 0.00047 1E-08 55.6 4.5 31 42-74 2-32 (453)
181 TIGR01176 fum_red_Fp fumarate 97.2 0.00047 1E-08 58.6 4.5 37 39-76 3-40 (580)
182 TIGR01438 TGR thioredoxin and 97.2 0.0005 1.1E-08 57.0 4.5 33 39-73 2-34 (484)
183 PRK09077 L-aspartate oxidase; 97.2 0.00048 1E-08 57.7 4.4 35 38-75 7-41 (536)
184 COG1231 Monoamine oxidase [Ami 97.2 0.00055 1.2E-08 57.2 4.6 38 37-76 5-42 (450)
185 TIGR00551 nadB L-aspartate oxi 97.2 0.00052 1.1E-08 56.7 4.5 34 39-75 2-35 (488)
186 PRK12845 3-ketosteroid-delta-1 97.2 0.00077 1.7E-08 57.1 5.6 37 36-75 13-49 (564)
187 COG2072 TrkA Predicted flavopr 97.2 0.00063 1.4E-08 56.0 4.9 39 36-76 5-44 (443)
188 PRK12839 hypothetical protein; 97.1 0.00072 1.6E-08 57.3 5.1 36 38-75 7-42 (572)
189 PRK15317 alkyl hydroperoxide r 97.1 0.00066 1.4E-08 56.4 4.7 35 37-73 209-243 (517)
190 PRK13800 putative oxidoreducta 97.1 0.00059 1.3E-08 60.5 4.6 37 37-75 11-47 (897)
191 TIGR02061 aprA adenosine phosp 97.1 0.00063 1.4E-08 58.5 4.5 35 41-76 1-38 (614)
192 PTZ00306 NADH-dependent fumara 97.1 0.00079 1.7E-08 61.4 4.9 37 37-75 407-443 (1167)
193 TIGR03140 AhpF alkyl hydropero 97.1 0.00079 1.7E-08 56.0 4.6 34 37-72 210-243 (515)
194 COG3380 Predicted NAD/FAD-depe 97.1 0.00086 1.9E-08 53.7 4.4 32 41-74 3-34 (331)
195 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00079 1.7E-08 56.1 4.4 35 40-76 3-37 (436)
196 PRK06912 acoL dihydrolipoamide 97.0 0.00086 1.9E-08 54.7 4.6 34 41-76 2-35 (458)
197 PLN02676 polyamine oxidase 97.0 0.001 2.2E-08 55.4 5.0 36 38-75 25-61 (487)
198 COG0578 GlpA Glycerol-3-phosph 97.0 0.0011 2.4E-08 56.4 5.2 40 36-77 9-48 (532)
199 COG3573 Predicted oxidoreducta 97.0 0.0011 2.4E-08 54.9 4.8 38 38-77 4-41 (552)
200 PF04820 Trp_halogenase: Trypt 97.0 0.00092 2E-08 55.2 4.3 45 41-86 1-50 (454)
201 PRK12831 putative oxidoreducta 97.0 0.0015 3.3E-08 53.9 5.6 37 37-75 138-174 (464)
202 TIGR00275 flavoprotein, HI0933 97.0 0.00064 1.4E-08 54.9 3.3 30 45-75 2-31 (400)
203 PRK07846 mycothione reductase; 97.0 0.00099 2.2E-08 54.6 4.3 43 39-85 1-46 (451)
204 PRK06134 putative FAD-binding 97.0 0.0013 2.7E-08 55.7 4.9 37 36-74 9-45 (581)
205 PLN02927 antheraxanthin epoxid 97.0 0.0012 2.6E-08 57.4 4.8 36 37-74 79-114 (668)
206 TIGR01372 soxA sarcosine oxida 96.9 0.0011 2.4E-08 59.4 4.6 36 38-75 162-197 (985)
207 COG1232 HemY Protoporphyrinoge 96.9 0.0014 3E-08 54.7 4.5 35 41-76 2-37 (444)
208 COG1053 SdhA Succinate dehydro 96.9 0.0014 3E-08 55.9 4.5 39 37-77 4-42 (562)
209 PRK07512 L-aspartate oxidase; 96.9 0.0012 2.7E-08 55.0 4.0 34 38-75 8-41 (513)
210 PF01134 GIDA: Glucose inhibit 96.9 0.0014 3.1E-08 53.8 4.3 28 41-70 1-28 (392)
211 PRK13977 myosin-cross-reactive 96.8 0.0024 5.3E-08 54.8 5.7 36 39-75 22-60 (576)
212 KOG0685|consensus 96.8 0.0016 3.5E-08 54.9 4.5 37 39-76 21-57 (498)
213 TIGR00137 gid_trmFO tRNA:m(5)U 96.8 0.0017 3.6E-08 54.0 4.5 33 41-75 2-34 (433)
214 TIGR03452 mycothione_red mycot 96.8 0.0017 3.6E-08 53.2 4.4 34 39-76 2-35 (452)
215 PRK12843 putative FAD-binding 96.8 0.0019 4.1E-08 54.6 4.9 36 38-75 15-50 (578)
216 TIGR03378 glycerol3P_GlpB glyc 96.8 0.0018 4E-08 53.6 4.5 33 40-74 1-33 (419)
217 TIGR01316 gltA glutamate synth 96.8 0.0027 5.8E-08 52.0 5.4 37 37-75 131-167 (449)
218 PRK12810 gltD glutamate syntha 96.8 0.0026 5.7E-08 52.3 5.3 36 38-75 142-177 (471)
219 TIGR01811 sdhA_Bsu succinate d 96.8 0.0015 3.2E-08 55.8 4.0 31 42-74 1-31 (603)
220 PLN02852 ferredoxin-NADP+ redu 96.8 0.0034 7.4E-08 52.8 6.1 38 38-76 25-63 (491)
221 TIGR03315 Se_ygfK putative sel 96.8 0.002 4.3E-08 58.5 4.8 36 38-75 536-571 (1012)
222 PRK08255 salicylyl-CoA 5-hydro 96.7 0.0023 4.9E-08 56.0 4.7 34 41-75 2-36 (765)
223 KOG2614|consensus 96.7 0.0027 5.9E-08 52.7 4.8 36 40-77 3-38 (420)
224 KOG2665|consensus 96.7 0.0016 3.5E-08 53.4 3.4 40 34-74 43-83 (453)
225 TIGR02732 zeta_caro_desat caro 96.7 0.0025 5.3E-08 52.7 4.4 32 42-75 2-33 (474)
226 KOG2960|consensus 96.6 0.00042 9.2E-09 54.2 -0.5 37 39-76 76-113 (328)
227 KOG0405|consensus 96.6 0.003 6.6E-08 52.3 4.4 38 34-73 15-52 (478)
228 PRK11749 dihydropyrimidine deh 96.6 0.0041 8.9E-08 50.7 5.2 36 38-75 139-174 (457)
229 TIGR02485 CobZ_N-term precorri 96.6 0.0022 4.7E-08 51.8 3.3 30 45-75 1-30 (432)
230 PLN02612 phytoene desaturase 96.5 0.0044 9.6E-08 52.4 5.2 34 39-74 93-126 (567)
231 KOG3855|consensus 96.5 0.0037 7.9E-08 52.4 4.5 39 36-75 33-74 (481)
232 COG3349 Uncharacterized conser 96.5 0.0033 7.2E-08 53.1 4.3 34 41-76 2-35 (485)
233 KOG1399|consensus 96.5 0.0032 6.9E-08 52.5 4.1 36 39-76 6-41 (448)
234 KOG2820|consensus 96.5 0.0036 7.8E-08 51.3 4.2 38 37-76 5-42 (399)
235 PRK07845 flavoprotein disulfid 96.5 0.0041 9E-08 51.0 4.6 33 41-75 3-35 (466)
236 PRK12769 putative oxidoreducta 96.5 0.0041 8.8E-08 53.3 4.7 36 38-75 326-361 (654)
237 PLN02328 lysine-specific histo 96.5 0.0047 1E-07 54.9 5.1 37 37-75 236-272 (808)
238 TIGR00136 gidA glucose-inhibit 96.5 0.0041 8.9E-08 53.9 4.6 33 40-74 1-33 (617)
239 PF00070 Pyr_redox: Pyridine n 96.5 0.0086 1.9E-07 37.6 5.0 34 42-77 2-35 (80)
240 PRK12778 putative bifunctional 96.4 0.0051 1.1E-07 53.5 5.1 35 38-74 430-464 (752)
241 PRK12775 putative trifunctiona 96.4 0.006 1.3E-07 55.1 5.1 37 38-76 429-465 (1006)
242 PLN02529 lysine-specific histo 96.3 0.0057 1.2E-07 53.9 4.8 36 38-75 159-194 (738)
243 PRK12779 putative bifunctional 96.3 0.005 1.1E-07 55.4 4.5 35 39-75 306-340 (944)
244 PRK09564 coenzyme A disulfide 96.3 0.006 1.3E-07 49.1 4.6 34 41-75 2-36 (444)
245 PRK13512 coenzyme A disulfide 96.3 0.0063 1.4E-07 49.5 4.7 34 41-75 3-37 (438)
246 PRK09853 putative selenate red 96.3 0.006 1.3E-07 55.5 4.6 36 38-75 538-573 (1019)
247 PRK12814 putative NADPH-depend 96.2 0.0083 1.8E-07 51.6 5.1 36 38-75 192-227 (652)
248 PRK09754 phenylpropionate diox 96.2 0.0089 1.9E-07 47.8 4.9 35 40-75 4-39 (396)
249 PRK12770 putative glutamate sy 96.2 0.0088 1.9E-07 47.1 4.7 36 39-76 18-53 (352)
250 KOG4716|consensus 96.2 0.0061 1.3E-07 50.5 3.8 38 34-73 14-51 (503)
251 PF13434 K_oxygenase: L-lysine 96.1 0.0073 1.6E-07 48.3 3.9 37 39-76 2-38 (341)
252 TIGR01318 gltD_gamma_fam gluta 96.0 0.016 3.4E-07 47.9 5.7 36 38-75 140-175 (467)
253 PTZ00318 NADH dehydrogenase-li 96.0 0.01 2.2E-07 48.1 4.6 38 37-76 8-45 (424)
254 COG3075 GlpB Anaerobic glycero 96.0 0.01 2.2E-07 48.8 4.4 35 39-75 2-36 (421)
255 PLN02487 zeta-carotene desatur 96.0 0.01 2.3E-07 50.7 4.7 36 39-76 75-110 (569)
256 PRK12809 putative oxidoreducta 96.0 0.014 3.1E-07 50.0 5.4 36 38-75 309-344 (639)
257 TIGR01317 GOGAT_sm_gam glutama 95.9 0.017 3.7E-07 48.0 5.5 35 39-75 143-177 (485)
258 PF00743 FMO-like: Flavin-bind 95.9 0.012 2.7E-07 49.7 4.6 34 41-76 3-36 (531)
259 PTZ00188 adrenodoxin reductase 95.9 0.019 4.1E-07 48.8 5.5 37 39-76 39-75 (506)
260 PF00996 GDI: GDP dissociation 95.8 0.015 3.2E-07 48.5 4.7 39 37-77 2-40 (438)
261 PLN03000 amine oxidase 95.8 0.014 3.1E-07 52.4 4.8 37 38-76 183-219 (881)
262 PF06039 Mqo: Malate:quinone o 95.7 0.015 3.2E-07 49.2 4.4 37 38-75 2-39 (488)
263 TIGR03169 Nterm_to_SelD pyridi 95.7 0.015 3.3E-07 45.4 4.2 34 42-76 2-37 (364)
264 PRK06567 putative bifunctional 95.7 0.014 3.1E-07 53.1 4.4 34 38-73 382-415 (1028)
265 PRK09897 hypothetical protein; 95.7 0.017 3.6E-07 49.1 4.6 34 40-74 2-36 (534)
266 PRK04965 NADH:flavorubredoxin 95.7 0.018 4E-07 45.6 4.5 35 40-75 3-38 (377)
267 KOG2853|consensus 95.7 0.012 2.7E-07 48.8 3.6 39 36-75 83-124 (509)
268 COG1148 HdrA Heterodisulfide r 95.6 0.018 3.9E-07 49.4 4.5 33 41-75 126-158 (622)
269 PRK12771 putative glutamate sy 95.5 0.021 4.6E-07 48.0 4.6 35 39-75 137-171 (564)
270 KOG1276|consensus 95.5 0.023 4.9E-07 47.9 4.7 40 39-79 11-51 (491)
271 PRK13984 putative oxidoreducta 95.5 0.029 6.2E-07 47.5 5.3 36 38-75 282-317 (604)
272 PF13454 NAD_binding_9: FAD-NA 95.4 0.028 6E-07 39.7 4.3 31 45-75 2-36 (156)
273 KOG0042|consensus 95.4 0.0075 1.6E-07 52.1 1.6 38 38-77 66-103 (680)
274 PLN02976 amine oxidase 95.2 0.027 5.9E-07 53.4 4.7 35 39-75 693-727 (1713)
275 KOG3851|consensus 94.9 0.026 5.5E-07 46.5 3.3 40 36-76 36-76 (446)
276 COG0445 GidA Flavin-dependent 94.9 0.026 5.6E-07 48.8 3.3 35 38-74 3-37 (621)
277 COG0029 NadB Aspartate oxidase 94.5 0.04 8.7E-07 46.9 3.5 33 41-76 9-41 (518)
278 KOG1335|consensus 94.1 0.061 1.3E-06 45.2 3.7 36 38-75 38-73 (506)
279 COG0569 TrkA K+ transport syst 94.0 0.086 1.9E-06 39.8 4.0 33 41-75 2-34 (225)
280 KOG2755|consensus 93.5 0.056 1.2E-06 43.4 2.5 34 41-75 1-35 (334)
281 PF02558 ApbA: Ketopantoate re 93.4 0.19 4.1E-06 34.5 4.7 29 45-74 3-31 (151)
282 COG1252 Ndh NADH dehydrogenase 93.4 0.15 3.3E-06 42.2 4.8 37 40-77 4-41 (405)
283 KOG2311|consensus 93.2 0.087 1.9E-06 45.4 3.3 35 36-72 25-59 (679)
284 COG2907 Predicted NAD/FAD-bind 93.1 0.092 2E-06 43.6 3.1 34 39-75 8-41 (447)
285 COG0446 HcaD Uncharacterized N 93.0 0.17 3.8E-06 39.0 4.5 35 40-76 137-171 (415)
286 KOG4254|consensus 93.0 0.098 2.1E-06 44.6 3.2 37 37-75 12-48 (561)
287 KOG1800|consensus 92.8 0.19 4.2E-06 42.1 4.6 39 37-76 18-57 (468)
288 PRK14989 nitrite reductase sub 92.5 0.24 5.2E-06 44.3 5.2 35 41-76 5-42 (847)
289 PF02254 TrkA_N: TrkA-N domain 92.4 0.34 7.5E-06 31.7 4.7 31 42-74 1-31 (116)
290 PF06100 Strep_67kDa_ant: Stre 92.4 0.14 3.1E-06 43.6 3.4 31 45-75 7-40 (500)
291 TIGR02374 nitri_red_nirB nitri 92.3 0.2 4.4E-06 44.1 4.4 33 43-76 2-36 (785)
292 COG1206 Gid NAD(FAD)-utilizing 92.2 0.21 4.6E-06 41.3 4.1 43 41-85 5-48 (439)
293 COG0493 GltD NADPH-dependent g 92.0 0.28 6.1E-06 41.0 4.7 35 40-76 124-158 (457)
294 COG4529 Uncharacterized protei 91.9 0.25 5.5E-06 41.8 4.4 36 39-75 1-38 (474)
295 PF01210 NAD_Gly3P_dh_N: NAD-d 91.9 0.35 7.6E-06 34.2 4.5 31 42-74 2-32 (157)
296 COG3486 IucD Lysine/ornithine 91.6 0.3 6.5E-06 40.9 4.4 40 37-77 3-42 (436)
297 PRK09754 phenylpropionate diox 91.6 0.35 7.5E-06 38.7 4.7 33 41-75 146-178 (396)
298 COG2509 Uncharacterized FAD-de 91.4 0.22 4.9E-06 42.2 3.5 42 34-76 13-58 (486)
299 KOG2404|consensus 91.4 0.24 5.2E-06 41.1 3.6 33 41-75 11-43 (477)
300 PRK06249 2-dehydropantoate 2-r 91.3 0.46 9.9E-06 37.0 5.0 33 40-74 6-38 (313)
301 PRK07251 pyridine nucleotide-d 91.1 0.41 8.8E-06 38.7 4.6 33 41-75 159-191 (438)
302 PRK05976 dihydrolipoamide dehy 91.0 0.39 8.5E-06 39.3 4.5 33 41-75 182-214 (472)
303 PRK04965 NADH:flavorubredoxin 90.6 0.49 1.1E-05 37.4 4.6 33 41-75 143-175 (377)
304 KOG4405|consensus 90.6 0.35 7.5E-06 41.0 3.8 40 36-77 5-44 (547)
305 PF02737 3HCDH_N: 3-hydroxyacy 90.4 0.62 1.3E-05 33.9 4.7 30 45-75 4-33 (180)
306 TIGR01350 lipoamide_DH dihydro 90.2 0.5 1.1E-05 38.2 4.4 33 41-75 172-204 (461)
307 PF01593 Amino_oxidase: Flavin 89.8 0.45 9.9E-06 36.1 3.7 26 50-76 1-26 (450)
308 PRK05708 2-dehydropantoate 2-r 89.8 0.59 1.3E-05 36.5 4.4 33 40-74 3-35 (305)
309 PRK06912 acoL dihydrolipoamide 89.8 0.61 1.3E-05 38.1 4.6 33 41-75 172-204 (458)
310 PRK06467 dihydrolipoamide dehy 89.5 0.61 1.3E-05 38.4 4.5 33 41-75 176-208 (471)
311 PRK01438 murD UDP-N-acetylmura 89.4 0.68 1.5E-05 37.9 4.7 32 41-74 18-49 (480)
312 TIGR03385 CoA_CoA_reduc CoA-di 89.2 0.71 1.5E-05 37.1 4.6 33 41-75 139-171 (427)
313 TIGR02053 MerA mercuric reduct 89.1 0.69 1.5E-05 37.7 4.5 33 41-75 168-200 (463)
314 PRK07846 mycothione reductase; 89.1 0.73 1.6E-05 37.8 4.6 33 41-75 168-200 (451)
315 PRK06416 dihydrolipoamide dehy 88.7 0.84 1.8E-05 37.1 4.7 34 41-76 174-207 (462)
316 PRK06522 2-dehydropantoate 2-r 88.7 0.82 1.8E-05 34.7 4.4 30 42-73 3-32 (304)
317 COG1252 Ndh NADH dehydrogenase 88.6 0.55 1.2E-05 39.0 3.6 36 40-76 156-203 (405)
318 PRK02705 murD UDP-N-acetylmura 88.5 0.86 1.9E-05 37.0 4.6 33 42-76 3-35 (459)
319 PRK12921 2-dehydropantoate 2-r 88.4 0.82 1.8E-05 34.8 4.2 29 42-72 3-31 (305)
320 COG3634 AhpF Alkyl hydroperoxi 88.3 0.29 6.2E-06 41.0 1.8 33 38-72 210-243 (520)
321 PRK06115 dihydrolipoamide dehy 88.3 0.94 2E-05 37.2 4.8 33 41-75 176-208 (466)
322 PRK05249 soluble pyridine nucl 88.3 0.88 1.9E-05 36.9 4.6 33 41-75 177-209 (461)
323 PRK06129 3-hydroxyacyl-CoA deh 88.2 0.8 1.7E-05 35.6 4.2 32 41-74 4-35 (308)
324 KOG2844|consensus 88.1 0.61 1.3E-05 41.6 3.7 33 38-72 38-71 (856)
325 PRK07818 dihydrolipoamide dehy 88.0 0.93 2E-05 37.1 4.6 33 41-75 174-206 (466)
326 PRK13512 coenzyme A disulfide 88.0 0.88 1.9E-05 37.0 4.4 33 41-75 150-182 (438)
327 PRK06370 mercuric reductase; V 88.0 0.95 2.1E-05 36.9 4.6 33 41-75 173-205 (463)
328 TIGR01421 gluta_reduc_1 glutat 87.9 0.97 2.1E-05 37.0 4.6 33 41-75 168-200 (450)
329 KOG0399|consensus 87.7 0.74 1.6E-05 43.7 4.1 42 34-77 1780-1821(2142)
330 PTZ00318 NADH dehydrogenase-li 87.4 1.1 2.5E-05 36.2 4.7 34 41-75 175-221 (424)
331 PRK08293 3-hydroxybutyryl-CoA 87.4 1 2.2E-05 34.6 4.3 32 41-74 5-36 (287)
332 PRK06292 dihydrolipoamide dehy 87.2 1.1 2.4E-05 36.3 4.6 33 41-75 171-203 (460)
333 COG1748 LYS9 Saccharopine dehy 87.0 1.1 2.3E-05 37.2 4.3 33 41-74 3-35 (389)
334 KOG2495|consensus 86.9 0.15 3.2E-06 43.1 -0.7 35 40-75 219-266 (491)
335 PRK14106 murD UDP-N-acetylmura 86.9 1.2 2.7E-05 35.9 4.7 32 41-74 7-38 (450)
336 PF00899 ThiF: ThiF family; I 86.6 1.9 4.1E-05 29.4 4.8 35 41-76 4-38 (135)
337 PRK06719 precorrin-2 dehydroge 86.5 1.5 3.3E-05 31.3 4.5 29 41-71 15-43 (157)
338 TIGR03452 mycothione_red mycot 86.4 1.2 2.7E-05 36.4 4.5 33 41-75 171-203 (452)
339 PRK09564 coenzyme A disulfide 86.2 1.3 2.9E-05 35.5 4.5 33 41-75 151-183 (444)
340 TIGR01424 gluta_reduc_2 glutat 86.1 1.4 3.1E-05 35.8 4.6 33 41-75 168-200 (446)
341 COG1249 Lpd Pyruvate/2-oxoglut 86.0 1.4 3E-05 36.9 4.6 34 42-77 176-209 (454)
342 PRK06718 precorrin-2 dehydroge 86.0 1.6 3.4E-05 32.5 4.5 31 41-73 12-42 (202)
343 PF13738 Pyr_redox_3: Pyridine 86.0 1.5 3.2E-05 31.0 4.2 33 40-74 168-200 (203)
344 PRK06327 dihydrolipoamide dehy 85.8 1.5 3.2E-05 36.1 4.6 33 41-75 185-217 (475)
345 COG5044 MRS6 RAB proteins gera 85.8 1.3 2.9E-05 37.0 4.3 36 39-76 6-41 (434)
346 PRK14620 NAD(P)H-dependent gly 85.6 1.5 3.2E-05 34.2 4.4 31 42-74 3-33 (326)
347 PRK09260 3-hydroxybutyryl-CoA 85.4 1.3 2.9E-05 34.0 4.0 31 42-74 4-34 (288)
348 PRK08010 pyridine nucleotide-d 85.1 1.7 3.8E-05 35.1 4.7 33 41-75 160-192 (441)
349 KOG1439|consensus 84.9 0.53 1.1E-05 39.5 1.6 37 38-76 3-39 (440)
350 KOG3923|consensus 84.9 1.5 3.2E-05 35.7 4.1 38 39-77 3-46 (342)
351 PRK07845 flavoprotein disulfid 84.9 1.8 3.8E-05 35.6 4.7 33 41-75 179-211 (466)
352 PRK10669 putative cation:proto 84.8 1.3 2.8E-05 37.3 3.9 34 40-75 418-451 (558)
353 cd01483 E1_enzyme_family Super 84.7 2.3 5.1E-05 29.1 4.6 34 42-76 2-35 (143)
354 TIGR01292 TRX_reduct thioredox 84.7 1.8 3.8E-05 32.2 4.3 33 41-75 143-175 (300)
355 PRK13748 putative mercuric red 84.7 1.8 3.8E-05 36.1 4.6 31 41-73 272-302 (561)
356 PRK06116 glutathione reductase 84.6 1.8 4E-05 35.1 4.6 33 41-75 169-201 (450)
357 TIGR03143 AhpF_homolog putativ 84.0 1.7 3.6E-05 36.7 4.3 33 41-75 145-177 (555)
358 TIGR03140 AhpF alkyl hydropero 84.0 1.7 3.8E-05 36.2 4.3 33 41-75 354-386 (515)
359 TIGR02374 nitri_red_nirB nitri 83.9 1.9 4E-05 38.2 4.7 33 41-75 142-174 (785)
360 KOG2852|consensus 83.6 0.63 1.4E-05 38.0 1.5 34 40-74 11-49 (380)
361 PRK14619 NAD(P)H-dependent gly 83.6 2.8 6E-05 32.6 5.1 33 40-74 5-37 (308)
362 PRK07530 3-hydroxybutyryl-CoA 83.5 2.6 5.7E-05 32.3 4.9 32 41-74 6-37 (292)
363 PLN02507 glutathione reductase 83.5 2 4.3E-05 35.8 4.5 33 41-75 205-237 (499)
364 PRK08229 2-dehydropantoate 2-r 83.4 2 4.3E-05 33.4 4.2 32 41-74 4-35 (341)
365 PRK14694 putative mercuric red 83.4 2.3 4.9E-05 34.9 4.7 31 41-73 180-210 (468)
366 PRK00094 gpsA NAD(P)H-dependen 83.3 2.5 5.4E-05 32.4 4.7 32 41-74 3-34 (325)
367 PRK06035 3-hydroxyacyl-CoA deh 83.3 2.2 4.8E-05 32.8 4.4 31 42-74 6-36 (291)
368 PF01488 Shikimate_DH: Shikima 83.3 3.1 6.7E-05 28.6 4.7 33 40-73 13-45 (135)
369 cd05311 NAD_bind_2_malic_enz N 83.1 2.2 4.8E-05 32.2 4.2 33 40-74 26-61 (226)
370 PRK10262 thioredoxin reductase 82.9 2.3 4.9E-05 32.7 4.3 32 41-74 148-179 (321)
371 cd01075 NAD_bind_Leu_Phe_Val_D 82.6 2.8 6E-05 31.0 4.5 32 41-74 30-61 (200)
372 PRK09496 trkA potassium transp 82.4 2.3 5E-05 34.2 4.3 34 40-75 232-265 (453)
373 PTZ00153 lipoamide dehydrogena 82.4 2.3 4.9E-05 37.2 4.5 33 41-75 314-346 (659)
374 PRK14727 putative mercuric red 82.3 2.5 5.4E-05 34.9 4.6 31 41-73 190-220 (479)
375 PRK07066 3-hydroxybutyryl-CoA 82.0 2.4 5.2E-05 33.9 4.3 32 41-74 9-40 (321)
376 TIGR01470 cysG_Nterm siroheme 82.0 2.9 6.4E-05 31.1 4.5 32 41-74 11-42 (205)
377 PRK07819 3-hydroxybutyryl-CoA 81.9 2.3 5.1E-05 33.0 4.1 34 41-76 7-40 (286)
378 PRK06130 3-hydroxybutyryl-CoA 81.8 2.7 5.9E-05 32.4 4.4 32 41-74 6-37 (311)
379 cd05191 NAD_bind_amino_acid_DH 81.6 4 8.8E-05 25.8 4.5 31 41-72 25-55 (86)
380 PF13241 NAD_binding_7: Putati 81.5 2.2 4.7E-05 28.1 3.3 32 40-73 8-39 (103)
381 PRK15317 alkyl hydroperoxide r 81.4 2.5 5.5E-05 35.2 4.4 33 41-75 353-385 (517)
382 PRK14618 NAD(P)H-dependent gly 81.4 2.8 6.1E-05 32.7 4.4 32 41-74 6-37 (328)
383 PRK09496 trkA potassium transp 81.4 2.6 5.6E-05 33.9 4.3 32 41-74 2-33 (453)
384 PF03721 UDPG_MGDP_dh_N: UDP-g 80.8 2.4 5.3E-05 31.0 3.6 31 42-74 3-33 (185)
385 PRK02472 murD UDP-N-acetylmura 80.7 3.2 7E-05 33.5 4.7 31 42-74 8-38 (447)
386 PLN02546 glutathione reductase 80.7 2.9 6.2E-05 35.7 4.5 33 41-75 254-286 (558)
387 PRK14989 nitrite reductase sub 80.7 2.7 5.9E-05 37.7 4.5 33 41-75 147-179 (847)
388 PRK12475 thiamine/molybdopteri 80.7 3.7 8.1E-05 32.9 4.9 36 40-76 25-60 (338)
389 TIGR01316 gltA glutamate synth 80.2 3.1 6.8E-05 34.1 4.5 33 41-75 274-306 (449)
390 PTZ00058 glutathione reductase 80.0 2.9 6.3E-05 35.7 4.3 33 41-75 239-271 (561)
391 PRK05808 3-hydroxybutyryl-CoA 79.9 3.1 6.8E-05 31.7 4.1 32 41-74 5-36 (282)
392 PRK12770 putative glutamate sy 79.7 3.5 7.5E-05 32.4 4.4 32 41-74 174-206 (352)
393 PLN02545 3-hydroxybutyryl-CoA 79.6 3.8 8.3E-05 31.4 4.6 31 42-74 7-37 (295)
394 PRK07688 thiamine/molybdopteri 79.4 3.8 8.2E-05 32.9 4.6 37 39-76 24-60 (339)
395 TIGR02356 adenyl_thiF thiazole 79.2 4.2 9.2E-05 29.9 4.5 37 39-76 21-57 (202)
396 COG1893 ApbA Ketopantoate redu 79.0 3.3 7.1E-05 32.8 4.1 31 42-74 3-33 (307)
397 TIGR02354 thiF_fam2 thiamine b 78.9 4.5 9.7E-05 30.0 4.6 33 40-74 22-55 (200)
398 cd01487 E1_ThiF_like E1_ThiF_l 78.9 4.6 0.0001 29.1 4.5 34 42-76 2-35 (174)
399 PRK04148 hypothetical protein; 78.9 2.3 4.9E-05 30.2 2.8 32 41-75 19-50 (134)
400 cd00757 ThiF_MoeB_HesA_family 78.4 4.7 0.0001 30.1 4.6 37 39-76 21-57 (228)
401 cd05292 LDH_2 A subgroup of L- 78.3 4.4 9.6E-05 31.8 4.6 33 41-74 2-35 (308)
402 PF03446 NAD_binding_2: NAD bi 78.1 4.6 9.9E-05 28.5 4.3 28 45-73 6-33 (163)
403 TIGR01763 MalateDH_bact malate 78.1 4.1 9E-05 32.0 4.4 32 41-73 3-34 (305)
404 PF03435 Saccharop_dh: Sacchar 78.0 3.2 6.8E-05 33.0 3.8 32 42-74 1-33 (386)
405 PRK08328 hypothetical protein; 78.0 4.9 0.00011 30.3 4.6 36 40-76 28-63 (231)
406 COG0446 HcaD Uncharacterized N 78.0 4.1 9E-05 31.4 4.3 31 45-75 3-34 (415)
407 PTZ00052 thioredoxin reductase 77.9 3.7 8.1E-05 34.2 4.3 31 41-73 184-214 (499)
408 PF01262 AlaDh_PNT_C: Alanine 77.7 5.1 0.00011 28.5 4.4 33 40-74 21-53 (168)
409 TIGR01423 trypano_reduc trypan 77.6 4.4 9.5E-05 33.9 4.6 34 41-75 189-224 (486)
410 PRK03562 glutathione-regulated 77.4 3.1 6.7E-05 35.9 3.8 34 40-75 401-434 (621)
411 PRK12549 shikimate 5-dehydroge 77.2 4.8 0.0001 31.3 4.5 32 41-73 129-160 (284)
412 TIGR01438 TGR thioredoxin and 77.1 3.8 8.3E-05 34.0 4.1 31 41-73 182-212 (484)
413 TIGR00518 alaDH alanine dehydr 77.0 4.5 9.9E-05 32.7 4.4 32 40-73 168-199 (370)
414 cd01339 LDH-like_MDH L-lactate 76.8 4.9 0.00011 31.2 4.4 30 45-75 3-33 (300)
415 PF03807 F420_oxidored: NADP o 76.8 6.6 0.00014 24.7 4.4 29 45-74 4-36 (96)
416 PRK11749 dihydropyrimidine deh 76.7 4.7 0.0001 32.9 4.5 33 41-74 275-307 (457)
417 PRK06223 malate dehydrogenase; 76.5 5.1 0.00011 30.9 4.5 32 41-74 4-36 (307)
418 KOG2018|consensus 76.5 4 8.6E-05 33.8 3.9 35 41-75 75-109 (430)
419 cd05291 HicDH_like L-2-hydroxy 76.4 5.6 0.00012 31.0 4.7 33 42-75 3-36 (306)
420 COG4716 Myosin-crossreactive a 76.4 0.98 2.1E-05 38.3 0.4 30 45-74 27-59 (587)
421 PRK08644 thiamine biosynthesis 76.3 5.8 0.00013 29.6 4.6 37 39-76 28-64 (212)
422 PRK15116 sulfur acceptor prote 76.2 5.5 0.00012 31.2 4.6 37 39-76 30-66 (268)
423 PRK05690 molybdopterin biosynt 76.1 6.2 0.00013 30.1 4.7 37 39-76 32-68 (245)
424 PRK07417 arogenate dehydrogena 75.7 5.2 0.00011 30.6 4.3 31 42-74 3-33 (279)
425 PF10727 Rossmann-like: Rossma 75.6 2.3 5.1E-05 29.7 2.1 37 36-74 7-43 (127)
426 TIGR02355 moeB molybdopterin s 75.5 6.1 0.00013 30.1 4.6 36 40-76 25-60 (240)
427 PTZ00082 L-lactate dehydrogena 75.4 6.2 0.00014 31.3 4.7 35 40-75 7-41 (321)
428 PRK05562 precorrin-2 dehydroge 75.2 5.3 0.00012 30.6 4.2 32 40-73 26-57 (223)
429 PRK12831 putative oxidoreducta 75.0 5.4 0.00012 33.0 4.4 33 41-75 283-315 (464)
430 PRK03659 glutathione-regulated 74.2 4.5 9.8E-05 34.7 3.9 34 40-75 401-434 (601)
431 cd01065 NAD_bind_Shikimate_DH 74.2 8.1 0.00018 26.2 4.6 33 41-74 21-53 (155)
432 PF13478 XdhC_C: XdhC Rossmann 74.0 5.1 0.00011 28.1 3.5 30 45-75 3-32 (136)
433 TIGR03026 NDP-sugDHase nucleot 74.0 4.8 0.0001 32.6 3.9 31 42-74 3-33 (411)
434 PRK04308 murD UDP-N-acetylmura 73.6 7.3 0.00016 31.6 4.8 33 41-75 7-39 (445)
435 cd00762 NAD_bind_malic_enz NAD 73.5 5.3 0.00012 31.3 3.8 35 40-75 26-70 (254)
436 TIGR01915 npdG NADPH-dependent 73.3 7.2 0.00016 28.8 4.4 31 42-74 3-34 (219)
437 cd00401 AdoHcyase S-adenosyl-L 73.2 6.6 0.00014 32.7 4.5 32 41-74 204-235 (413)
438 TIGR02853 spore_dpaA dipicolin 73.1 6.6 0.00014 30.7 4.3 33 40-74 152-184 (287)
439 COG0451 WcaG Nucleoside-diphos 73.0 7.9 0.00017 28.8 4.6 33 42-76 3-36 (314)
440 PRK11064 wecC UDP-N-acetyl-D-m 73.0 6.5 0.00014 32.2 4.4 32 41-74 5-36 (415)
441 PRK07531 bifunctional 3-hydrox 72.1 6.2 0.00013 33.0 4.2 32 41-74 6-37 (495)
442 PF02826 2-Hacid_dh_C: D-isome 72.1 8.2 0.00018 27.6 4.4 34 40-75 37-70 (178)
443 PF01118 Semialdhyde_dh: Semia 71.9 8.8 0.00019 25.7 4.2 31 45-75 4-35 (121)
444 TIGR03376 glycerol3P_DH glycer 71.9 6.4 0.00014 31.7 4.1 29 42-72 2-38 (342)
445 PLN02353 probable UDP-glucose 71.7 6.9 0.00015 33.0 4.4 33 41-74 3-36 (473)
446 PRK08017 oxidoreductase; Provi 71.6 9 0.0002 27.8 4.5 30 42-73 5-35 (256)
447 KOG0404|consensus 71.6 4.9 0.00011 32.0 3.2 32 41-74 10-41 (322)
448 PF00056 Ldh_1_N: lactate/mala 71.5 9.3 0.0002 26.6 4.4 32 42-74 3-36 (141)
449 TIGR01505 tartro_sem_red 2-hyd 71.3 6.2 0.00013 30.2 3.7 29 45-74 4-32 (291)
450 PTZ00117 malate dehydrogenase; 71.3 8.3 0.00018 30.5 4.5 35 40-75 6-40 (319)
451 cd05312 NAD_bind_1_malic_enz N 71.2 7.8 0.00017 30.7 4.4 35 40-75 26-70 (279)
452 PF13460 NAD_binding_10: NADH( 71.1 10 0.00022 26.2 4.5 32 42-75 1-33 (183)
453 TIGR03736 PRTRC_ThiF PRTRC sys 71.1 9.4 0.0002 29.5 4.7 40 36-76 8-57 (244)
454 TIGR02279 PaaC-3OHAcCoADH 3-hy 71.1 7.2 0.00016 33.0 4.4 32 42-75 8-39 (503)
455 PRK08762 molybdopterin biosynt 71.0 8.2 0.00018 31.1 4.5 35 40-75 136-170 (376)
456 cd01484 E1-2_like Ubiquitin ac 70.6 9.2 0.0002 29.2 4.5 34 42-76 2-35 (234)
457 TIGR01381 E1_like_apg7 E1-like 70.4 7.6 0.00016 34.4 4.5 37 39-76 338-374 (664)
458 PRK11730 fadB multifunctional 70.4 6.6 0.00014 34.5 4.1 33 41-75 315-347 (715)
459 cd05211 NAD_bind_Glu_Leu_Phe_V 70.0 9.8 0.00021 28.7 4.5 35 39-74 23-57 (217)
460 PRK11154 fadJ multifunctional 69.9 7.2 0.00016 34.2 4.2 34 41-75 311-344 (708)
461 PRK04690 murD UDP-N-acetylmura 69.8 8.2 0.00018 31.9 4.4 33 41-75 10-42 (468)
462 cd01486 Apg7 Apg7 is an E1-lik 69.7 9.5 0.0002 30.7 4.6 34 42-76 2-35 (307)
463 PF03949 Malic_M: Malic enzyme 69.6 7.5 0.00016 30.4 3.9 35 39-74 25-69 (255)
464 PLN02172 flavin-containing mon 69.4 6 0.00013 32.9 3.5 32 41-74 206-237 (461)
465 PRK08268 3-hydroxy-acyl-CoA de 69.2 7.9 0.00017 32.7 4.2 32 42-75 10-41 (507)
466 PRK12548 shikimate 5-dehydroge 69.0 9.8 0.00021 29.6 4.4 31 41-73 128-159 (289)
467 TIGR02437 FadB fatty oxidation 68.9 7.4 0.00016 34.3 4.1 33 41-75 315-347 (714)
468 TIGR00936 ahcY adenosylhomocys 68.9 9.2 0.0002 31.7 4.5 32 41-74 197-228 (406)
469 cd05213 NAD_bind_Glutamyl_tRNA 68.8 9.1 0.0002 30.0 4.3 34 40-74 179-212 (311)
470 TIGR01317 GOGAT_sm_gam glutama 68.7 9.1 0.0002 31.8 4.5 34 41-75 285-318 (485)
471 COG2072 TrkA Predicted flavopr 68.6 9.1 0.0002 31.6 4.4 33 41-75 177-209 (443)
472 TIGR02440 FadJ fatty oxidation 68.6 8.2 0.00018 33.9 4.3 34 41-75 306-339 (699)
473 COG0287 TyrA Prephenate dehydr 68.6 10 0.00022 29.8 4.5 34 41-76 5-38 (279)
474 TIGR01809 Shik-DH-AROM shikima 68.6 9.6 0.00021 29.5 4.3 33 40-73 126-158 (282)
475 PLN02695 GDP-D-mannose-3',5'-e 68.4 15 0.00033 29.1 5.5 34 38-73 20-54 (370)
476 cd05293 LDH_1 A subgroup of L- 67.9 11 0.00023 29.9 4.5 34 40-74 4-38 (312)
477 PRK01710 murD UDP-N-acetylmura 67.8 10 0.00023 31.0 4.6 32 41-74 16-47 (458)
478 cd01492 Aos1_SUMO Ubiquitin ac 67.8 12 0.00026 27.5 4.5 36 40-76 22-57 (197)
479 TIGR02964 xanthine_xdhC xanthi 67.8 12 0.00026 28.7 4.7 36 38-75 99-134 (246)
480 PRK07326 short chain dehydroge 67.7 10 0.00022 27.2 4.1 31 41-73 8-39 (237)
481 PRK14027 quinate/shikimate deh 67.7 11 0.00023 29.5 4.4 32 41-73 129-160 (283)
482 PF00106 adh_short: short chai 67.5 11 0.00024 25.4 4.0 31 42-73 3-34 (167)
483 PRK00066 ldh L-lactate dehydro 67.3 10 0.00022 30.0 4.3 34 40-74 7-41 (315)
484 PRK12778 putative bifunctional 67.2 9.4 0.0002 33.4 4.4 33 41-75 572-605 (752)
485 cd05290 LDH_3 A subgroup of L- 67.1 9.7 0.00021 30.1 4.1 32 42-74 2-34 (307)
486 COG0026 PurK Phosphoribosylami 67.1 12 0.00026 31.1 4.7 32 44-76 5-36 (375)
487 PRK05600 thiamine biosynthesis 67.1 11 0.00024 30.6 4.6 37 39-76 41-77 (370)
488 COG0240 GpsA Glycerol-3-phosph 66.9 9.2 0.0002 31.1 4.0 31 41-73 3-33 (329)
489 cd01078 NAD_bind_H4MPT_DH NADP 66.8 14 0.0003 26.5 4.6 32 40-73 29-61 (194)
490 PRK12550 shikimate 5-dehydroge 66.7 12 0.00025 29.2 4.4 32 41-73 124-155 (272)
491 cd00755 YgdL_like Family of ac 66.6 13 0.00028 28.3 4.6 36 40-76 12-47 (231)
492 PLN02256 arogenate dehydrogena 66.5 13 0.00028 29.4 4.7 35 38-74 35-69 (304)
493 TIGR00507 aroE shikimate 5-deh 66.5 12 0.00025 28.6 4.4 31 41-73 119-149 (270)
494 cd01489 Uba2_SUMO Ubiquitin ac 66.4 12 0.00027 29.9 4.6 34 42-76 2-35 (312)
495 PRK12814 putative NADPH-depend 66.2 10 0.00023 32.8 4.4 33 41-74 325-357 (652)
496 PRK08306 dipicolinate synthase 66.1 12 0.00026 29.3 4.4 33 40-74 153-185 (296)
497 PRK05476 S-adenosyl-L-homocyst 65.9 12 0.00026 31.3 4.6 32 41-74 214-245 (425)
498 PRK08217 fabG 3-ketoacyl-(acyl 65.9 14 0.00031 26.5 4.6 32 41-74 7-39 (253)
499 PTZ00345 glycerol-3-phosphate 65.7 11 0.00024 30.7 4.3 34 40-74 12-51 (365)
500 COG1063 Tdh Threonine dehydrog 65.6 11 0.00024 29.9 4.3 33 41-74 171-203 (350)
No 1
>KOG1238|consensus
Probab=99.67 E-value=3.4e-17 Score=138.97 Aligned_cols=71 Identities=55% Similarity=0.858 Sum_probs=65.6
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCCcccchhhhhhccCCCccceeeeeeCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQC 107 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~~~~iP~~~~~l~~s~~dW~y~T~PQ~~~c 107 (107)
....|||| |||||+|||++|++|+|++.++|||||+|+.++...++|..+..++.+.+||.|.|+||+++|
T Consensus 54 ~~~~yDyI-VVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac 124 (623)
T KOG1238|consen 54 LDSSYDYI-VVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHAC 124 (623)
T ss_pred cccCCCEE-EECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhh
Confidence 55689999 999999999999999999999999999999887778889777778899999999999999988
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=99.33 E-value=2.8e-12 Score=106.76 Aligned_cols=69 Identities=41% Similarity=0.605 Sum_probs=54.9
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC---CCcccchhhhhhc-cCCCccceeeeeeCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE---NEVTDVPSLAAWL-QLSKFDWQYKTEPTGKQ 106 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~---~~~~~iP~~~~~l-~~s~~dW~y~T~PQ~~~ 106 (107)
...|||| |||+|++|+++|.+|+++++.+|||||+|+.. .....+|...... ....++|+|.++||+++
T Consensus 3 ~~~~D~i-IVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~ 75 (560)
T PRK02106 3 TMEYDYI-IIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHM 75 (560)
T ss_pred CCcCcEE-EECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCC
Confidence 4569999 99999999999999999779999999999754 2345566544332 34678999999999864
No 3
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.29 E-value=5.8e-12 Score=95.75 Aligned_cols=65 Identities=38% Similarity=0.573 Sum_probs=48.5
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCCcccchhhhhh-ccCCCccceeeeeeCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAW-LQLSKFDWQYKTEPTGK 105 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~~~~iP~~~~~-l~~s~~dW~y~T~PQ~~ 105 (107)
|||| |||+|.+|+++|.+|++.++.+|||||+|+........+..... .....++|.|.+.|+..
T Consensus 1 yD~i-IVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (296)
T PF00732_consen 1 YDYI-IVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQPF 66 (296)
T ss_dssp EEEE-EES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEEC
T ss_pred CCEE-EECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCcccccccccccccc
Confidence 7999 99999999999999999767899999999876533322222222 23577999999998865
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.26 E-value=9e-12 Score=103.06 Aligned_cols=65 Identities=42% Similarity=0.697 Sum_probs=51.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC---Ccccchhhhhh-ccCCCccceeeeeeCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN---EVTDVPSLAAW-LQLSKFDWQYKTEPTGKQ 106 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~---~~~~iP~~~~~-l~~s~~dW~y~T~PQ~~~ 106 (107)
||| |||+|++|+++|.||++++..+|||||+|+... ....+|..+.. ...+.++|+|.++||+++
T Consensus 1 D~i-IVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 69 (532)
T TIGR01810 1 DYI-IIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHM 69 (532)
T ss_pred CEE-EECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCC
Confidence 899 999999999999999997668999999997532 34556654433 235668999999999865
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.20 E-value=2.3e-11 Score=101.91 Aligned_cols=68 Identities=40% Similarity=0.648 Sum_probs=58.2
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCC-cccchhhhhhccC-CCccceeeeeeCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENE-VTDVPSLAAWLQL-SKFDWQYKTEPTGK 105 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~-~~~iP~~~~~l~~-s~~dW~y~T~PQ~~ 105 (107)
...+|||| |||+|++|+++|.+|+ +++.+|+|||+|+.... .+++|..+..+.. +.++|.|.++|+++
T Consensus 4 ~~~~~D~v-IVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 73 (542)
T COG2303 4 MKMEYDYV-IVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEPH 73 (542)
T ss_pred ccCCCCEE-EECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCcccC
Confidence 34579999 9999999999999999 68999999999987653 6778887776654 48999999999874
No 6
>PLN02785 Protein HOTHEAD
Probab=99.02 E-value=4.6e-10 Score=95.11 Aligned_cols=65 Identities=29% Similarity=0.335 Sum_probs=48.5
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCCCcccchhhhhhccCCCccceeeeeeCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGK 105 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~~~~~iP~~~~~l~~s~~dW~y~T~PQ~~ 105 (107)
...|||| |||+|+|||++|.+|++ +.+|+|||+|+.......+.... .+....+||.|.+.||.+
T Consensus 53 ~~~yD~I-IVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~~ 117 (587)
T PLN02785 53 DSAYDYI-VVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQAF 117 (587)
T ss_pred cccCCEE-EECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCccccccc
Confidence 3469999 99999999999999998 58999999998542112222221 223456899999999864
No 7
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.29 E-value=1e-06 Score=70.53 Aligned_cols=37 Identities=35% Similarity=0.479 Sum_probs=33.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.+||++ |||+|+||+++|++|++. +.+|+|+|++...
T Consensus 2 ~~~DVv-IVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVV-IVGAGPAGSSAARRLAKA-GLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEE-EECCchHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 469999 999999999999999995 6999999998765
No 8
>PRK10015 oxidoreductase; Provisional
Probab=98.16 E-value=3.2e-06 Score=68.82 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=33.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.+||+| |||+|+||+++|..|++ .+.+|+|||++...
T Consensus 4 ~~~DVi-IVGgGpAG~~aA~~LA~-~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAI-VVGAGVAGSVAALVMAR-AGLDVLVIERGDSA 40 (429)
T ss_pred cccCEE-EECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 469999 99999999999999998 58999999998653
No 9
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.15 E-value=4e-06 Score=66.35 Aligned_cols=42 Identities=31% Similarity=0.395 Sum_probs=36.3
Q ss_pred ccCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 33 HSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 33 ~~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+......+|++ |||||.+|+++|..|++ .+++|+|+|+.+..
T Consensus 12 ~~~~~~~~dV~-IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 53 (415)
T PRK07364 12 PSTRSLTYDVA-IVGGGIVGLTLAAALKD-SGLRIALIEAQPAE 53 (415)
T ss_pred CCCCccccCEE-EECcCHHHHHHHHHHhc-CCCEEEEEecCCcc
Confidence 45555679999 99999999999999998 58999999998753
No 10
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.15 E-value=3.4e-06 Score=68.43 Aligned_cols=37 Identities=32% Similarity=0.365 Sum_probs=33.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..||++ |||+|+||+++|..|++ .+.+|+|||++...
T Consensus 4 ~~~DVi-IVGaGpAG~~aA~~La~-~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAI-IVGAGLAGSVAALVLAR-EGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEE-EECcCHHHHHHHHHHHh-CCCeEEEEEcCCCC
Confidence 469999 99999999999999998 58999999998653
No 11
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.09 E-value=5.3e-06 Score=62.70 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=31.2
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
++|++ |||||++|+++|..|++ .+.+|+|||+.+...
T Consensus 1 ~~dV~-IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 1 EYDVA-IVGAGPAGLAAALALAR-AGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEE-EE--SHHHHHHHHHHHH-TTCEEEEEESSSSCC
T ss_pred CceEE-EECCCHHHHHHHHHHHh-cccccccchhccccc
Confidence 37999 99999999999999998 589999999987653
No 12
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.09 E-value=5.3e-06 Score=61.71 Aligned_cols=35 Identities=40% Similarity=0.454 Sum_probs=31.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
||++ |||+|++|+++|.+|++ .+.+|+|||++...
T Consensus 1 ~dv~-IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVV-VVGAGPAGASAAYRLAD-KGLRVLLLEKKSFP 35 (295)
T ss_pred CCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence 6999 99999999999999998 58999999998654
No 13
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.03 E-value=7.5e-06 Score=63.80 Aligned_cols=36 Identities=25% Similarity=0.124 Sum_probs=32.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++|++ |||||..|+++|..|++. +.+|+|||++..
T Consensus 2 ~~~dv~-IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVI-VIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred CcccEE-EECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 458999 999999999999999995 899999999753
No 14
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.00 E-value=9.2e-06 Score=61.43 Aligned_cols=33 Identities=39% Similarity=0.443 Sum_probs=30.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|++ |||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus 1 Dvv-IIGaGi~G~~~A~~La~-~G~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVV-IIGAGIAGLSTAYELAR-RGHSVTLLERGDI 33 (358)
T ss_dssp EEE-EECTSHHHHHHHHHHHH-TTSEEEEEESSST
T ss_pred CEE-EECcCHHHHHHHHHHHH-CCCeEEEEeeccc
Confidence 788 99999999999999999 6999999999943
No 15
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.99 E-value=1.3e-05 Score=66.02 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 35 LLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.....||++ |||||+||+++|..|++ .+.+|+|||+..
T Consensus 35 ~~~~~~DVi-IVGaGPAG~~aA~~LA~-~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVA-VIGGGPAGACAAETLAK-GGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 445679999 99999999999999998 589999999875
No 16
>PRK09126 hypothetical protein; Provisional
Probab=97.97 E-value=1.1e-05 Score=63.42 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=32.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||||++|+++|..|++ .+.+|+|+|+...
T Consensus 2 ~~~dvi-IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIV-VVGAGPAGLSFARSLAG-SGLKVTLIERQPL 37 (392)
T ss_pred CcccEE-EECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence 358999 99999999999999998 5899999999864
No 17
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.97 E-value=9.5e-06 Score=64.47 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=30.1
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
||++ |||||+||+++|..|++ .+.+|+|||+.
T Consensus 1 yDVv-IVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVA-VIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEE-EECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 7999 99999999999999998 58999999997
No 18
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.97 E-value=1.5e-05 Score=49.90 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=27.4
Q ss_pred EeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
|||+|.+|+++|.+|++. +.+|+|+|+.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCccc
Confidence 799999999999999985 8999999998764
No 19
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.96 E-value=1.2e-05 Score=63.32 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.5
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+.||++ |||||.+|+++|..|++ .+.+|+|||+..
T Consensus 3 ~~~~dVi-IvGgG~aGl~~A~~La~-~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIA-IVGGGMVGAALALGLAQ-HGFSVAVLEHAA 38 (391)
T ss_pred cccccEE-EECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 4569999 99999999999999998 589999999975
No 20
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.95 E-value=1.6e-05 Score=63.14 Aligned_cols=41 Identities=27% Similarity=0.191 Sum_probs=34.8
Q ss_pred ccCCCCccceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105 33 HSLLVNWGDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP 74 (107)
Q Consensus 33 ~~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~ 74 (107)
.+.....+|++ |||||..|+++|..|++..+ .+|+|||++.
T Consensus 24 ~~~~~~~~dvv-IIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 24 SPEPKPTYDVI-IVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCCCccCCEE-EECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 35566789999 99999999999999998435 5899999975
No 21
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.94 E-value=1.4e-05 Score=62.82 Aligned_cols=37 Identities=35% Similarity=0.477 Sum_probs=33.1
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+..+|++ |||+|.+|+++|..|++ .+.+|+|||+.+.
T Consensus 5 ~~~~dVi-IVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIA-VIGGGPAGLAAAIALAR-AGASVALVAPEPP 41 (388)
T ss_pred CCCCCEE-EECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence 4568999 99999999999999998 5899999999754
No 22
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.94 E-value=1.2e-05 Score=62.64 Aligned_cols=34 Identities=29% Similarity=0.221 Sum_probs=30.7
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
||++ |||||.+|+++|+.|++. +.+|+|||++..
T Consensus 1 ~dvv-IIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVI-VVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEE-EECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 6899 999999999999999984 789999999653
No 23
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.93 E-value=1.4e-05 Score=64.55 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=32.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+.||++ |||+|++|+.+|.+|++ .+.+|+|||+++
T Consensus 2 ~~yDvv-VIGgGpaGl~aA~~la~-~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAV-IIGFGKAGKTLAVTLAK-AGWRVALIEQSN 36 (441)
T ss_pred CcCCEE-EECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence 469999 99999999999999998 589999999874
No 24
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.92 E-value=1.5e-05 Score=61.22 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=32.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|++|+++|.+|++ .+.+|+|||++..
T Consensus 20 ~~~DVv-IVGgGpAGL~aA~~la~-~G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVI-IVGAGPSGLTAAYYLAK-NGLKVCVLERSLA 55 (254)
T ss_pred cCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 368999 99999999999999998 5899999999864
No 25
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.92 E-value=1.6e-05 Score=61.04 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=32.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|+||+++|.+|++ .+.+|+|||+...
T Consensus 24 ~~~DVv-IVGgGpAGl~AA~~la~-~G~~V~liEk~~~ 59 (257)
T PRK04176 24 LEVDVA-IVGAGPSGLTAAYYLAK-AGLKVAVFERKLS 59 (257)
T ss_pred ccCCEE-EECccHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 358999 99999999999999998 6999999998754
No 26
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.91 E-value=1.7e-05 Score=62.21 Aligned_cols=36 Identities=31% Similarity=0.340 Sum_probs=32.5
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.+|++ |||||++|+++|..|++ .+.+|+|+|++...
T Consensus 5 ~~dv~-IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVV-VVGGGLVGASLALALAQ-SGLRVALLAPRAPP 40 (388)
T ss_pred cCCEE-EECcCHHHHHHHHHHHh-CCCeEEEEecCCCc
Confidence 57999 99999999999999998 58999999998653
No 27
>PLN02463 lycopene beta cyclase
Probab=97.91 E-value=2.5e-05 Score=64.51 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=33.4
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
....||++ |||||+||+++|..|++ .+.+|+|||+.+.
T Consensus 25 ~~~~~DVv-IVGaGpAGLalA~~La~-~Gl~V~liE~~~~ 62 (447)
T PLN02463 25 KSRVVDLV-VVGGGPAGLAVAQQVSE-AGLSVCCIDPSPL 62 (447)
T ss_pred cccCceEE-EECCCHHHHHHHHHHHH-CCCeEEEeccCcc
Confidence 44569999 99999999999999998 5999999999753
No 28
>PRK08013 oxidoreductase; Provisional
Probab=97.91 E-value=1.7e-05 Score=63.32 Aligned_cols=36 Identities=31% Similarity=0.308 Sum_probs=32.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus 2 ~~~dV~-IvGaGpaGl~~A~~La~-~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVV-IAGGGMVGLAVACGLQG-SGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEE-EECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence 358999 99999999999999998 5899999999765
No 29
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.91 E-value=1.3e-05 Score=63.87 Aligned_cols=35 Identities=37% Similarity=0.588 Sum_probs=30.1
Q ss_pred ceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~~ 76 (107)
|++ |||+|+||+.+|.+|.+ .++.+|+|||+....
T Consensus 1 Dvi-IvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVI-IVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEE-EECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 789 99999999999999932 368999999997654
No 30
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.90 E-value=1.8e-05 Score=63.97 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=32.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+||++ |||+|+||+.+|.+|++ .+.+|+|||++.
T Consensus 2 ~~~dvv-VIG~GpaG~~aA~~l~~-~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLI-VIGFGKAGKTLAAKLAS-AGKKVALVEESK 36 (438)
T ss_pred CccCEE-EECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence 469999 99999999999999998 589999999975
No 31
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.89 E-value=1.4e-05 Score=61.52 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=29.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|++|+++|+.|++. ++||+++|+...
T Consensus 16 ~~~DV~-IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVA-IVGAGPAGLTAAYYLAKA-GLKVAVIERKLS 51 (230)
T ss_dssp TEESEE-EE--SHHHHHHHHHHHHH-TS-EEEEESSSS
T ss_pred ccCCEE-EECCChhHHHHHHHHHHC-CCeEEEEecCCC
Confidence 358999 999999999999999995 999999998654
No 32
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.89 E-value=1.9e-05 Score=65.70 Aligned_cols=37 Identities=32% Similarity=0.334 Sum_probs=33.2
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...||++ |||||..|+.+|..|++ .+++|+|||+++.
T Consensus 4 ~~~~DVv-IIGGGi~G~~~A~~la~-rGl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLL-VIGGGINGAGIARDAAG-RGLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 3469999 99999999999999998 5999999999754
No 33
>PRK07045 putative monooxygenase; Reviewed
Probab=97.88 E-value=2e-05 Score=62.20 Aligned_cols=38 Identities=29% Similarity=0.245 Sum_probs=33.9
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+..+|++ |||||++|+++|..|++ .+++|+|+|+.+..
T Consensus 3 ~~~~~V~-IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVL-INGSGIAGVALAHLLGA-RGHSVTVVERAARN 40 (388)
T ss_pred CceeEEE-EECCcHHHHHHHHHHHh-cCCcEEEEeCCCcc
Confidence 3568999 99999999999999998 58999999998754
No 34
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.88 E-value=1.6e-05 Score=65.07 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=26.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
||++ |||||+||+++|..+++ .+.+|+|+|++...
T Consensus 1 ydvi-IIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 1 YDVI-IIGGGAAGLMAAITAAE-KGARVLVLERNKRV 35 (409)
T ss_dssp -SEE-EE--SHHHHHHHHHHHH-TT--EEEE-SSSSS
T ss_pred CcEE-EECCCHHHHHHHHHHHh-CCCCEEEEeCCccc
Confidence 7999 99999999999999988 59999999998654
No 35
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.88 E-value=2e-05 Score=65.16 Aligned_cols=37 Identities=30% Similarity=0.269 Sum_probs=33.3
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+||++ |||||..|+.+|..|++ .+.+|+|||+++.
T Consensus 4 ~~~~DVv-IIGGGi~G~~~A~~la~-rG~~V~LlEk~d~ 40 (502)
T PRK13369 4 PETYDLF-VIGGGINGAGIARDAAG-RGLKVLLCEKDDL 40 (502)
T ss_pred CcccCEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence 4569999 99999999999999998 4899999999854
No 36
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.87 E-value=2.1e-05 Score=62.12 Aligned_cols=37 Identities=35% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+|++ |||||++|+++|..|++ .+.+|+|||+.+.
T Consensus 4 ~~~~dV~-IvGaG~aGl~~A~~La~-~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAV-IVGGGVVGAACALALAD-AGLSVALVEGREP 40 (392)
T ss_pred CCCCCEE-EECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence 3468999 99999999999999998 5899999999753
No 37
>PLN02697 lycopene epsilon cyclase
Probab=97.87 E-value=3e-05 Score=65.51 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
...||++ |||+|+||+++|.+|++ .+++|+|||++.
T Consensus 106 ~~~~DVv-IVGaGPAGLalA~~Lak-~Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLV-VIGCGPAGLALAAESAK-LGLNVGLIGPDL 141 (529)
T ss_pred cCcccEE-EECcCHHHHHHHHHHHh-CCCcEEEecCcc
Confidence 3469999 99999999999999998 599999999863
No 38
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.87 E-value=2.1e-05 Score=63.84 Aligned_cols=35 Identities=46% Similarity=0.519 Sum_probs=31.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..+|++ |||+|.+|+++|.++++ .+.+|+|||+..
T Consensus 3 ~~~DVv-VVG~G~aGl~AA~~aa~-~G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVL-VIGGGNAALCAALAARE-AGASVLLLEAAP 37 (466)
T ss_pred ccCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 458999 99999999999999998 589999999975
No 39
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.87 E-value=2.2e-05 Score=62.24 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=31.2
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+|++ |||||++|+++|..|++ .+.+|+|+|+.+
T Consensus 3 ~~dv~-IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIA-VVGGGMVGAATALGFAK-QGRSVAVIEGGE 36 (384)
T ss_pred cccEE-EECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence 48999 99999999999999998 589999999864
No 40
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.86 E-value=2e-05 Score=62.68 Aligned_cols=33 Identities=45% Similarity=0.635 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|++ |||+|.||+++|.++++ .+.+|+|||++..
T Consensus 1 DVv-VIG~G~AGl~AA~~Aae-~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVV-VIGGGLAGLAAAIEAAE-AGAKVLLVEKGPR 33 (417)
T ss_dssp SEE-EE-SSHHHHHHHHHHHH-TTT-EEEEESSSG
T ss_pred CEE-EECCCHHHHHHHHHHhh-hcCeEEEEEeecc
Confidence 788 99999999999999999 5889999999876
No 41
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.86 E-value=1.9e-05 Score=62.13 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=31.8
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~ 75 (107)
.||++ |||||++|+++|..|++.. +++|+|||+.+.
T Consensus 1 ~~dv~-IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVV-IAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEE-EECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 47999 9999999999999999852 599999999764
No 42
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.85 E-value=2.2e-05 Score=61.52 Aligned_cols=35 Identities=40% Similarity=0.442 Sum_probs=31.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAG 73 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag 73 (107)
..+|++ |||+|++|+++|..|++. .+.+|+|+|+.
T Consensus 2 ~~~dv~-IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVI-IVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEE-EECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 468999 999999999999999873 38999999994
No 43
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.84 E-value=2.4e-05 Score=62.20 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=30.8
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+|++ |||+|..|+++|.+|++. +.+|+|||++.
T Consensus 2 ~~vv-IIGaG~~G~~~A~~La~~-g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIA-VIGAGITGVTTAYALAQR-GYQVTVFDRHR 34 (410)
T ss_pred CEEE-EECCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 6999 999999999999999984 89999999986
No 44
>PRK06370 mercuric reductase; Validated
Probab=97.83 E-value=2.8e-05 Score=63.28 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=32.9
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+.+||++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus 3 ~~~~Dvv-VIG~GpaG~~aA~~aa~-~G~~v~lie~~~~ 39 (463)
T PRK06370 3 AQRYDAI-VIGAGQAGPPLAARAAG-LGMKVALIERGLL 39 (463)
T ss_pred CccccEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCcc
Confidence 4569999 99999999999999998 5899999998643
No 45
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.83 E-value=2.5e-05 Score=64.34 Aligned_cols=36 Identities=36% Similarity=0.546 Sum_probs=33.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+.+|++ |||||+||+++|..+++ .+.+|+|||+++.
T Consensus 2 ~~~dvi-IIGgGpAGlMaA~~aa~-~G~~V~lid~~~k 37 (408)
T COG2081 2 ERFDVI-IIGGGPAGLMAAISAAK-AGRRVLLIDKGPK 37 (408)
T ss_pred CcceEE-EECCCHHHHHHHHHHhh-cCCEEEEEecCcc
Confidence 568999 99999999999999998 6999999999864
No 46
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.82 E-value=2.6e-05 Score=61.30 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=29.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|++ |||+|+||+.+|.+|++ .+.+|+|||+.+.
T Consensus 1 Dvi-IiGaG~AGl~~A~~la~-~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLA-VIGGGPAGLAIALELAR-PGLRVQLIEPHPP 33 (388)
T ss_pred CEE-EECCCHHHHHHHHHHHh-CCCeEEEEccCCC
Confidence 788 99999999999999987 5999999998753
No 47
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.82 E-value=2.6e-05 Score=61.93 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=31.6
Q ss_pred ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~ 74 (107)
++|++ |||||.+|+++|++|++. ++.+|+|||++.
T Consensus 2 ~~dVv-IIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFV-IIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEE-EECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 48999 999999999999999983 489999999975
No 48
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.82 E-value=2.5e-05 Score=64.71 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=32.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|+| |||+|..|+++|..|++ .+++|+|+|+...
T Consensus 2 ~~~dvv-VIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~ 37 (487)
T COG1233 2 PMYDVV-VIGAGLNGLAAAALLAR-AGLKVTVLEKNDR 37 (487)
T ss_pred CCccEE-EECCChhHHHHHHHHHh-CCCEEEEEEecCC
Confidence 468999 99999999999999998 5999999997543
No 49
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.82 E-value=2.6e-05 Score=61.92 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=31.3
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
++|++ |||||++|+++|..|++ .+.+|+|||+.+
T Consensus 2 ~~dV~-IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLL-IVGAGMVGSALALALQG-SGLEVLLLDGGP 35 (405)
T ss_pred CccEE-EECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 47999 99999999999999988 589999999875
No 50
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.82 E-value=3.1e-05 Score=62.72 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=32.3
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+..||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus 3 ~~~yDvv-VIGaGpaG~~aA~~la~-~G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLV-VIGSGPAGEGAAMQAAK-LGKRVAVIERYR 38 (461)
T ss_pred CccccEE-EECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence 4569999 99999999999999998 589999999863
No 51
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.81 E-value=2.9e-05 Score=60.61 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=30.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+|++ |||+|.+|+++|.+|++. +.+|+|||++..
T Consensus 1 ~dv~-IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLI-IVGAGILGLAHAYAAARR-GLSVTVIERSSR 34 (365)
T ss_pred CCEE-EECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 5899 999999999999999984 899999999753
No 52
>PRK06116 glutathione reductase; Validated
Probab=97.81 E-value=3e-05 Score=62.79 Aligned_cols=35 Identities=34% Similarity=0.351 Sum_probs=31.8
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus 3 ~~~Dvv-VIG~GpaG~~aA~~~a~-~G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLI-VIGGGSGGIASANRAAM-YGAKVALIEAKR 37 (450)
T ss_pred CCCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence 369999 99999999999999998 589999999863
No 53
>PRK06185 hypothetical protein; Provisional
Probab=97.81 E-value=3e-05 Score=61.35 Aligned_cols=36 Identities=33% Similarity=0.411 Sum_probs=32.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||||.+|+++|..|++ .+.+|+|||+.+.
T Consensus 5 ~~~dV~-IvGgG~~Gl~~A~~La~-~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCC-IVGGGPAGMMLGLLLAR-AGVDVTVLEKHAD 40 (407)
T ss_pred ccccEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 468999 99999999999999998 5899999999753
No 54
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.80 E-value=2.8e-05 Score=62.52 Aligned_cols=33 Identities=39% Similarity=0.544 Sum_probs=30.1
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+|++ |||+|+||+++|..|++ .+.+|+|||+..
T Consensus 1 ~~Vv-IVGaGPAG~~aA~~la~-~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVA-VVGGGPAGASAAETLAS-AGIQTFLLERKP 33 (398)
T ss_pred CeEE-EECCcHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 5889 99999999999999998 589999999864
No 55
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.79 E-value=3.4e-05 Score=63.23 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=30.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
.+||++ |||+|+||+.+|.++++ .+.+|+|||+
T Consensus 2 ~~~Dvv-VIG~GpaG~~AA~~aa~-~G~~V~liE~ 34 (466)
T PRK06115 2 ASYDVV-IIGGGPGGYNAAIRAGQ-LGLKVACVEG 34 (466)
T ss_pred CcccEE-EECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 359999 99999999999999998 5899999997
No 56
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.78 E-value=3.4e-05 Score=62.93 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=33.3
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
..++|++ |||+|.+|+++|.+|++. ++.+|+|||++..
T Consensus 22 ~~~~DVv-IIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVC-IVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEE-EECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4468999 999999999999999984 4899999999753
No 57
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.78 E-value=3.7e-05 Score=62.25 Aligned_cols=35 Identities=37% Similarity=0.479 Sum_probs=31.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..||++ |||+|++|..+|.+|++ .+.+|+|||++.
T Consensus 2 ~~yDvv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVI-VIGAGPAGYVAARRAAK-LGKKVALIEKGP 36 (460)
T ss_pred CcccEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 459999 99999999999999998 589999999843
No 58
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.78 E-value=3.4e-05 Score=59.91 Aligned_cols=34 Identities=35% Similarity=0.574 Sum_probs=30.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
|++ |||+|++|+++|..|++ .+.+|+|+|+....
T Consensus 1 dVi-IvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIV-IVGGGMVGLALALALAR-SGLKIALIEATPAE 34 (385)
T ss_pred CEE-EECCCHHHHHHHHHHhc-CCCEEEEEeCCCcc
Confidence 678 99999999999999998 58999999998753
No 59
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.77 E-value=3.4e-05 Score=62.59 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=31.3
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+||++ |||+|.+|+++|..+++ .+.+|||||+++.
T Consensus 1 ~fd~l-IVGaGlsG~V~A~~a~~-~gk~VLIvekR~H 35 (374)
T COG0562 1 MFDYL-IVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNH 35 (374)
T ss_pred CCcEE-EECCchhHHHHHHHHHH-cCCEEEEEecccc
Confidence 48999 99999999999997777 5999999999764
No 60
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.76 E-value=3.5e-05 Score=63.69 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=34.2
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
++.||+| |||+|.+|+++|..|++ .|.+|++||+....
T Consensus 2 ~~~~DVi-ViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~y 39 (443)
T PTZ00363 2 DETYDVI-VCGTGLKECILSGLLSV-NGKKVLHMDRNPYY 39 (443)
T ss_pred CCcceEE-EECCChHHHHHHhhhhh-CCCEEEEecCCCCc
Confidence 4569999 99999999999999998 59999999997654
No 61
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.76 E-value=3.8e-05 Score=62.45 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
++|++ |||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus 1 ~~Dvv-IIGaG~aGlsaA~~La~-~G~~V~viEk~~~ 35 (377)
T TIGR00031 1 MFDYI-IVGAGLSGIVLANILAQ-LNKRVLVVEKRNH 35 (377)
T ss_pred CCcEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 37999 99999999999999997 5899999999653
No 62
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.76 E-value=4.2e-05 Score=64.15 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=32.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..||++ |||||..|+.+|+.|++ .+.+|+|||++..
T Consensus 5 ~~~DVv-IIGGGi~G~~iA~~La~-rG~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVI-IIGGGATGAGIARDCAL-RGLRCILVERHDI 40 (546)
T ss_pred ccccEE-EECcCHHHHHHHHHHHH-cCCeEEEEECCCC
Confidence 358999 99999999999999998 5899999999753
No 63
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.76 E-value=3.5e-05 Score=62.96 Aligned_cols=35 Identities=37% Similarity=0.447 Sum_probs=31.7
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+||++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus 2 ~yDvv-VIG~GpaG~~aA~~aa~-~G~~V~liE~~~~ 36 (450)
T TIGR01421 2 HYDYL-VIGGGSGGIASARRAAE-HGAKALLVEAKKL 36 (450)
T ss_pred CCCEE-EECcCHHHHHHHHHHHH-CCCcEEEeccccc
Confidence 58999 99999999999999998 5899999998643
No 64
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.75 E-value=4.1e-05 Score=57.28 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.2
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
||++ |||+|.+|+.+|..|.+ .+.+|+|||++.
T Consensus 1 ~dvv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVI-IIGAGPAGLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred CcEE-EECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 6899 99999999999999988 589999999875
No 65
>PRK11445 putative oxidoreductase; Provisional
Probab=97.75 E-value=3.5e-05 Score=60.63 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.5
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+||++ |||+|+||+++|..|++ . .+|+|||+.+.
T Consensus 1 ~~dV~-IvGaGpaGl~~A~~La~-~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVA-IIGLGPAGSALARLLAG-K-MKVIAIDKKHQ 34 (351)
T ss_pred CceEE-EECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence 47999 99999999999999998 4 89999998763
No 66
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.74 E-value=3.8e-05 Score=62.43 Aligned_cols=34 Identities=38% Similarity=0.454 Sum_probs=26.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
|++ |||||++|+++|..+++ .+.+|+|||+.+.-
T Consensus 1 DVV-VvGgG~aG~~AAi~AAr-~G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVV-VVGGGPAGVAAAIAAAR-AGAKVLLIEKGGFL 34 (428)
T ss_dssp EEE-EE--SHHHHHHHHHHHH-TTS-EEEE-SSSSS
T ss_pred CEE-EECccHHHHHHHHHHHH-CCCEEEEEECCccC
Confidence 788 99999999999999998 59999999998753
No 67
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.73 E-value=4.2e-05 Score=61.25 Aligned_cols=33 Identities=36% Similarity=0.651 Sum_probs=30.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~ 74 (107)
|++ |||||.||+.+|.+|++. ++.+|+|||+++
T Consensus 1 Dvi-IvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCI-IVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEE-EECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 788 999999999999999973 589999999976
No 68
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.73 E-value=4.5e-05 Score=63.65 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=32.8
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP 74 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~ 74 (107)
..++|++ |||||..|+++|++|++. ++.+|+|||+..
T Consensus 3 ~~~~DVv-IIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 3 ESKTDVV-LIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred CccceEE-EECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 3468999 999999999999999984 688999999875
No 69
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.73 E-value=4.8e-05 Score=60.59 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=31.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
..+|++ |||||++|+++|..|++ .+.+|.|||+.
T Consensus 3 ~~~dV~-IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVA-IIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred CcCCEE-EECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 358999 99999999999999988 58999999986
No 70
>PRK07121 hypothetical protein; Validated
Probab=97.72 E-value=6.1e-05 Score=61.95 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=32.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+++|.++++ .+.+|+|||+...
T Consensus 19 ~~~DVv-VVGaG~AGl~AA~~aae-~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVV-VVGFGAAGACAAIEAAA-AGARVLVLERAAG 54 (492)
T ss_pred CccCEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 468999 99999999999999998 5899999999764
No 71
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.72 E-value=4e-05 Score=62.27 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=31.2
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.||++ |||+|+||..+|.++++ .+.+|+|||++.
T Consensus 2 ~yDvv-VIG~GpaG~~aA~~aa~-~G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLF-VIGAGSGGVRAARLAAN-HGAKVAIAEEPR 35 (446)
T ss_pred cccEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCc
Confidence 58999 99999999999999998 589999999853
No 72
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.72 E-value=4.3e-05 Score=63.50 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=31.1
Q ss_pred cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~ 74 (107)
+|++ |||||.+|+++|.+|++. ++.+|+|+|+..
T Consensus 1 ~DVv-IIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 1 TDVV-LIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred CcEE-EECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 5899 999999999999999984 689999999965
No 73
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.72 E-value=5.8e-05 Score=58.80 Aligned_cols=37 Identities=35% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..++|++ |||+|.+|+++|+.|++. +.+|++||++..
T Consensus 2 ~~~~~vv-VIGgGi~Gls~A~~La~~-G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVV-IIGGGIVGLSAAYYLAER-GADVTVLEAGEA 38 (387)
T ss_pred CCcceEE-EECCcHHHHHHHHHHHHc-CCEEEEEecCcc
Confidence 3468999 999999999999999994 779999999764
No 74
>PRK07208 hypothetical protein; Provisional
Probab=97.71 E-value=5.4e-05 Score=61.40 Aligned_cols=37 Identities=32% Similarity=0.417 Sum_probs=32.5
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+...|++ |||||.+|+++|.+|.+ .+.+|+|+|+.+.
T Consensus 2 ~~~~~vv-IiGaGisGL~aA~~L~~-~g~~v~v~E~~~~ 38 (479)
T PRK07208 2 TNKKSVV-IIGAGPAGLTAAYELLK-RGYPVTVLEADPV 38 (479)
T ss_pred CCCCcEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 4567999 99999999999999998 4899999999654
No 75
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.70 E-value=5e-05 Score=59.40 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=30.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~~~ 76 (107)
|++ |||||++|+++|..|++ .+ .+|+|+|+....
T Consensus 1 dv~-IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVI-IVGGGLVGLSLALALSR-LGKIKIALIEANSPS 35 (382)
T ss_pred CEE-EECccHHHHHHHHHHhc-CCCceEEEEeCCCcc
Confidence 678 99999999999999998 57 999999998654
No 76
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.70 E-value=5.6e-05 Score=61.79 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=32.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..||++ |||+|++|+.+|.+|++ .+.+|+|||++..
T Consensus 3 ~~ydvv-VIG~GpaG~~aA~~aa~-~G~~v~lie~~~~ 38 (472)
T PRK05976 3 KEYDLV-IIGGGPGGYVAAIRAGQ-LGLKTALVEKGKL 38 (472)
T ss_pred ccccEE-EECCCHHHHHHHHHHHh-CCCeEEEEEccCC
Confidence 469999 99999999999999998 5899999998643
No 77
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=5.6e-05 Score=61.68 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=31.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+||++ |||+|++|..+|.++++ .+.+|+|||++.
T Consensus 3 ~~~Dvv-IIG~GpaG~~AA~~aa~-~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVV-VLGAGPGGYVAAIRAAQ-LGLKTAVVEKKY 37 (466)
T ss_pred CcCCEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 359999 99999999999999998 589999999864
No 78
>PRK06996 hypothetical protein; Provisional
Probab=97.69 E-value=5.8e-05 Score=60.17 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=34.2
Q ss_pred cCCCCccceEEEeCccHHHHHHHHHHHHhc---CCeEEEEcCCCC
Q psy4105 34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVA---HWSVLLLEAGPD 75 (107)
Q Consensus 34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~---~~~VlvIEag~~ 75 (107)
++....+|++ |||||++|+++|..|++.. +++|+|||+...
T Consensus 6 ~~~~~~~dv~-IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 6 SMAAPDFDIA-IVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred hccCCCCCEE-EECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 4556678999 9999999999999999843 368999999753
No 79
>PLN02268 probable polyamine oxidase
Probab=97.69 E-value=5.7e-05 Score=60.56 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=30.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+++ |||+|.+|+++|++|.+ .+.+|+|+|+.+.-
T Consensus 2 ~Vv-VIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~ 35 (435)
T PLN02268 2 SVI-VIGGGIAGIAAARALHD-ASFKVTLLESRDRI 35 (435)
T ss_pred CEE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 578 99999999999999998 58999999997643
No 80
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=5.2e-05 Score=61.55 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=31.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..||++ |||+|+||+.+|.++++ .+.+|+|||++.
T Consensus 3 ~~yDvv-VIGaGpaG~~aA~~aa~-~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVI-VIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK 37 (462)
T ss_pred ccccEE-EECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence 459999 99999999999999998 489999999865
No 81
>PRK06184 hypothetical protein; Provisional
Probab=97.69 E-value=6.4e-05 Score=61.80 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=32.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+.+|++ |||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 2 ~~~dVl-IVGaGpaGl~~A~~La~-~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVL-IVGAGPTGLTLAIELAR-RGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence 458999 99999999999999998 58999999997543
No 82
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.68 E-value=4.2e-05 Score=59.47 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=31.8
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..|++ |||+|++|+++|++|++ .+++|+|+|+.-.
T Consensus 30 esDVi-IVGaGPsGLtAAyyLAk-~g~kV~i~E~~ls 64 (262)
T COG1635 30 ESDVI-IVGAGPSGLTAAYYLAK-AGLKVAIFERKLS 64 (262)
T ss_pred hccEE-EECcCcchHHHHHHHHh-CCceEEEEEeecc
Confidence 46999 99999999999999999 5999999999644
No 83
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.68 E-value=5.4e-05 Score=61.24 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=30.8
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.||++ |||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus 1 ~yDvv-VIG~G~aGl~aA~~la~-~G~~v~lie~~~ 34 (461)
T TIGR01350 1 AYDVV-VIGGGPGGYVAAIRAAQ-LGLKVALVEKEY 34 (461)
T ss_pred CccEE-EECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 48999 99999999999999998 589999999843
No 84
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.68 E-value=8.4e-05 Score=62.27 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCCCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105 35 LLVNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP 74 (107)
Q Consensus 35 ~~~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~ 74 (107)
....++|++ |||||..|+++|+.|++. +..+|+|||+..
T Consensus 41 ~~~~~~DVv-IIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 41 LGSDVYDVV-IVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred ccCCcccEE-EECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 344579999 999999999999999984 457999999974
No 85
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.68 E-value=5.7e-05 Score=61.16 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=30.3
Q ss_pred cceEEEeCccHHHHHHHHHHHHh---cCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEV---AHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~ 74 (107)
||++ |||||++|+++|..|++. .+.+|+|||+.+
T Consensus 1 ~DV~-IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVV-IVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEE-EECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 6899 999999999999999973 489999999953
No 86
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.68 E-value=6.6e-05 Score=62.34 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=33.4
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...++|++ |||+|.+|+++|.++++ .+.+|+|||+...
T Consensus 58 ~~~~~DVv-VVG~G~AGl~AAi~Aa~-~Ga~VivlEK~~~ 95 (506)
T PRK06481 58 LKDKYDIV-IVGAGGAGMSAAIEAKD-AGMNPVILEKMPV 95 (506)
T ss_pred ccccCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 34578999 99999999999999998 5899999999764
No 87
>KOG0029|consensus
Probab=97.67 E-value=6.3e-05 Score=63.24 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=34.0
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.....++| |||||.||+++|..|.+ .+.+|+|+||.+.-
T Consensus 12 ~~~~~~VI-VIGAGiaGLsAArqL~~-~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 12 AGKKKKVI-VIGAGLAGLSAARQLQD-FGFDVLVLEARDRV 50 (501)
T ss_pred ccCCCcEE-EECCcHHHHHHHHHHHH-cCCceEEEeccCCc
Confidence 34567999 99999999999999998 59999999997643
No 88
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.67 E-value=6.7e-05 Score=61.62 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=31.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+||++ |||+|++|..+|.++++ .+.+|+|||+.+
T Consensus 3 ~~~Dvv-VIG~GpaG~~aA~~aa~-~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVV-VLGAGPAGYSAAFRAAD-LGLETVCVERYS 37 (471)
T ss_pred ccceEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 469999 99999999999999998 589999999863
No 89
>PLN02985 squalene monooxygenase
Probab=97.66 E-value=7.5e-05 Score=62.51 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=33.5
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
....+|++ |||+|.+|+++|..|++ .+.+|+|||+...
T Consensus 40 ~~~~~DVi-IVGAG~aGlalA~aLa~-~G~~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVI-IVGAGVGGSALAYALAK-DGRRVHVIERDLR 77 (514)
T ss_pred cCCCceEE-EECCCHHHHHHHHHHHH-cCCeEEEEECcCC
Confidence 45568999 99999999999999998 5899999999753
No 90
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.66 E-value=6.2e-05 Score=59.54 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=30.7
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+|++ |||||++|+++|..|++ .+++|+|+|+.+
T Consensus 1 ~~dV~-IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTV-ILGCGLSGMLTALSFAQ-KGIKTTIFESKS 34 (374)
T ss_pred CccEE-EECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence 37899 99999999999999988 589999999864
No 91
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.66 E-value=6.7e-05 Score=64.20 Aligned_cols=38 Identities=29% Similarity=0.216 Sum_probs=33.7
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...||++ |||||..|+.+|..|++ .+++|+|||+++..
T Consensus 69 ~~~~DVv-VIGGGi~Ga~~A~~lA~-rGl~V~LvE~~d~a 106 (627)
T PLN02464 69 AEPLDVL-VVGGGATGAGVALDAAT-RGLRVGLVEREDFS 106 (627)
T ss_pred CCccCEE-EECCCHHHHHHHHHHHh-CCCEEEEEeccccC
Confidence 4569999 99999999999999998 58999999998543
No 92
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.64 E-value=6.9e-05 Score=60.93 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=30.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
||++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus 1 yDvv-VIGaGpaG~~aA~~aa~-~g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLV-IIGSGAAAFAAAIKAAE-LGASVAMVERGPL 34 (463)
T ss_pred CCEE-EECCCHHHHHHHHHHHH-CCCeEEEEeCCcc
Confidence 7999 99999999999999998 5899999998653
No 93
>PRK08244 hypothetical protein; Provisional
Probab=97.64 E-value=7.9e-05 Score=61.03 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=32.4
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.+|++ |||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 2 ~~dVl-IVGaGpaGl~lA~~L~~-~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVI-IIGGGPVGLMLASELAL-AGVKTCVIERLKET 37 (493)
T ss_pred CCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 47999 99999999999999998 59999999997654
No 94
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.64 E-value=6.9e-05 Score=61.55 Aligned_cols=35 Identities=31% Similarity=0.265 Sum_probs=31.7
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
||++ |||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus 1 ~dvv-ViGaG~~Gl~aA~~La~-~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAI-VIGSGIGGLVTATQLAV-KGAKVLVLERYLIP 35 (493)
T ss_pred CcEE-EECCcHHHHHHHHHHHH-CCCcEEEEECCCCC
Confidence 6899 99999999999999998 59999999997653
No 95
>PRK06847 hypothetical protein; Provisional
Probab=97.63 E-value=8.9e-05 Score=57.84 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=31.6
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..|++ |||||.+|+++|..|++ .+.+|+|+|+...
T Consensus 4 ~~~V~-IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVL-IVGGGIGGLSAAIALRR-AGIAVDLVEIDPE 38 (375)
T ss_pred cceEE-EECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 46899 99999999999999998 5899999998764
No 96
>PRK07236 hypothetical protein; Provisional
Probab=97.63 E-value=8.2e-05 Score=58.89 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=32.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||||.+|+++|..|++ .+.+|+|+|+.+.
T Consensus 5 ~~~~Vi-IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAV-VIGGSLGGLFAALLLRR-AGWDVDVFERSPT 40 (386)
T ss_pred CCCeEE-EECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 357899 99999999999999998 5899999999763
No 97
>PRK06753 hypothetical protein; Provisional
Probab=97.63 E-value=7.7e-05 Score=58.26 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=30.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+++ |||||.+|+++|..|++ .+.+|.|+|+.+..
T Consensus 2 ~V~-IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIA-IIGAGIGGLTAAALLQE-QGHEVKVFEKNESV 35 (373)
T ss_pred EEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCCcc
Confidence 688 99999999999999998 58999999998753
No 98
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.63 E-value=7.9e-05 Score=62.58 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=32.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..||++ |||||+||+.+|..|++ .+.+|+|||++..
T Consensus 3 ~~yDVv-IIGgGpAGL~AA~~lar-~g~~V~liE~~~~ 38 (555)
T TIGR03143 3 EIYDLI-IIGGGPAGLSAGIYAGR-AKLDTLIIEKDDF 38 (555)
T ss_pred CcCcEE-EECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence 359999 99999999999999998 5899999998653
No 99
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.63 E-value=7.4e-05 Score=60.06 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=30.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhc---CCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVA---HWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~---~~~VlvIEag~~ 75 (107)
.|++ |||||.+|+++|.+|.+.. +.+|+|+|+.+.
T Consensus 3 ~~v~-VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r 40 (462)
T TIGR00562 3 KHVV-IIGGGISGLCAAYYLEKEIPELPVELTLVEASDR 40 (462)
T ss_pred ceEE-EECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence 5889 9999999999999999842 799999999764
No 100
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.62 E-value=8.2e-05 Score=63.51 Aligned_cols=39 Identities=21% Similarity=0.117 Sum_probs=33.8
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
....+|++ |||+|.||+.+|.++++ .+.+|+|||++...
T Consensus 26 ~~~~~DVl-VIG~G~AGl~AAi~Aa~-~G~~V~lveK~~~~ 64 (617)
T PTZ00139 26 IDHTYDAV-VVGAGGAGLRAALGLVE-LGYKTACISKLFPT 64 (617)
T ss_pred cccccCEE-EECccHHHHHHHHHHHH-cCCcEEEEeccCCC
Confidence 33568999 99999999999999988 58999999998653
No 101
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.62 E-value=7.5e-05 Score=59.49 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=30.9
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.+|++ |||||.+|+++|..|++ .+++|.|||+.
T Consensus 2 ~~dV~-IvGaG~aGl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVA-IVGAGPAGLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred CCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence 47999 99999999999999998 58999999998
No 102
>PRK07190 hypothetical protein; Provisional
Probab=97.62 E-value=9.1e-05 Score=61.44 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=33.2
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...+|++ |||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 3 ~~~~dVl-IVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVV-IIGAGPVGLMCAYLGQL-CGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEE-EECCCHHHHHHHHHHHH-cCCCEEEEeCCCcc
Confidence 3458999 99999999999999987 58999999998643
No 103
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.62 E-value=7.9e-05 Score=59.28 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=29.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~ 75 (107)
+++ |||||.+|+++|.+|.+.+ +.+|+|+|+.+.
T Consensus 2 ~v~-IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~ 36 (451)
T PRK11883 2 KVA-IIGGGITGLSAAYRLHKKGPDADITLLEASDR 36 (451)
T ss_pred eEE-EECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 467 9999999999999999852 389999999653
No 104
>PLN02661 Putative thiazole synthesis
Probab=97.62 E-value=7.4e-05 Score=60.71 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=32.4
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.+|++ |||+|.+|+.+|..|++.++.+|+|||++..
T Consensus 92 ~~DVl-IVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 92 DTDVV-IVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred cCCEE-EECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 57999 9999999999999999766899999999754
No 105
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.61 E-value=8.9e-05 Score=59.21 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.9
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.+|++ |||||++|+++|..|++ .+++|+|||+.+.
T Consensus 2 ~~dV~-IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVA-IIGAGPSGLLLGQLLHK-AGIDNVILERQSR 36 (390)
T ss_pred CceEE-EECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 37899 99999999999999998 5999999999874
No 106
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.61 E-value=8.8e-05 Score=58.91 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=31.9
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.+|++ |||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus 2 ~~dV~-IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVA-IIGAGPAGLLLGQLLHL-AGIDSVVLERRSR 36 (392)
T ss_pred cceEE-EECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence 47899 99999999999999998 5999999999874
No 107
>PLN02576 protoporphyrinogen oxidase
Probab=97.60 E-value=9.6e-05 Score=60.23 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=31.8
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||||.+|+++|++|.+..+.+|.|+|+.+.
T Consensus 11 ~~~~v~-IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r 47 (496)
T PLN02576 11 SSKDVA-VVGAGVSGLAAAYALASKHGVNVLVTEARDR 47 (496)
T ss_pred CCCCEE-EECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 347899 9999999999999999832789999999764
No 108
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.60 E-value=8.5e-05 Score=61.79 Aligned_cols=35 Identities=29% Similarity=0.236 Sum_probs=31.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++|++ |||+| +|+++|.++++ .+.+|+|||+...
T Consensus 6 ~~~DVv-VVG~G-aGl~aA~~aa~-~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVL-VAGSG-GGVAGAYTAAR-EGLSVALVEATDK 40 (513)
T ss_pred CccCEE-EECch-HHHHHHHHHHH-CCCcEEEEecCCC
Confidence 468999 99999 99999999998 5899999998754
No 109
>PRK14694 putative mercuric reductase; Provisional
Probab=97.59 E-value=0.0001 Score=60.31 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=32.9
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...||++ |||+|++|..+|.+|++ .+.+|+|||++..
T Consensus 4 ~~~~dvi-VIGaG~aG~~aA~~l~~-~g~~v~lie~~~~ 40 (468)
T PRK14694 4 DNNLHIA-VIGSGGSAMAAALKATE-RGARVTLIERGTI 40 (468)
T ss_pred CCcCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEEcccc
Confidence 3579999 99999999999999998 4889999998753
No 110
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.59 E-value=9.6e-05 Score=62.70 Aligned_cols=40 Identities=28% Similarity=0.204 Sum_probs=34.2
Q ss_pred cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
++....+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 7 ~~~~~~~DVl-VIG~G~AGl~AAi~Aa~-~G~~V~vleK~~~ 46 (591)
T PRK07057 7 SLPRRKFDVV-IVGAGGSGMRASLQLAR-AGLSVAVLSKVFP 46 (591)
T ss_pred CcccccCCEE-EECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence 4445578999 99999999999999988 5889999999753
No 111
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.59 E-value=0.0001 Score=57.97 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=31.8
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..|++ |||||.+|+++|..|++ .+.+|.|+|+.+.
T Consensus 4 ~~~V~-IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVL-IVGGGIGGLAAALALAR-QGIKVKLLEQAAE 38 (396)
T ss_pred CCeEE-EECCcHHHHHHHHHHHh-CCCcEEEEeeCcc
Confidence 47899 99999999999999998 5899999999764
No 112
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.58 E-value=8.6e-05 Score=64.02 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=32.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..||++ |||||.||+.+|..+++ .+.+|++||...
T Consensus 3 ~~yDVI-VVGGGpAG~eAA~~aAR-~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVI-VVGGGHAGCEAALAAAR-MGAKTLLLTHNL 37 (618)
T ss_pred ccceEE-EECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence 469999 99999999999999998 599999999874
No 113
>PRK06126 hypothetical protein; Provisional
Probab=97.58 E-value=0.00012 Score=60.75 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=33.5
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
....+|++ |||||++|+++|..|++ .+.+|+|||+.+.
T Consensus 4 ~~~~~~Vl-IVGaGpaGL~~Al~La~-~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVL-IVGGGPVGLALALDLGR-RGVDSILVERKDG 41 (545)
T ss_pred CCccCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence 34568999 99999999999999998 5899999998754
No 114
>PRK07588 hypothetical protein; Provisional
Probab=97.58 E-value=0.0001 Score=58.29 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=30.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
|++ |||||.+|+++|..|++ .+.+|+|+|+.+..
T Consensus 2 ~V~-IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVA-ISGAGIAGPTLAYWLRR-YGHEPTLIERAPEL 35 (391)
T ss_pred eEE-EECccHHHHHHHHHHHH-CCCceEEEeCCCCc
Confidence 688 99999999999999998 58999999998643
No 115
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.58 E-value=0.00011 Score=61.57 Aligned_cols=35 Identities=37% Similarity=0.422 Sum_probs=32.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..+|++ |||+|.||+++|..+++ .+.+|+|||++.
T Consensus 3 ~~~DVv-VVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVI-VVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred ccCCEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 468999 99999999999999988 589999999987
No 116
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.58 E-value=9.3e-05 Score=59.62 Aligned_cols=33 Identities=36% Similarity=0.381 Sum_probs=29.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~~ 75 (107)
|++ |||+|.+|+++|.++++ .+ .+|+|||+.+.
T Consensus 1 DVv-VVG~G~AGl~AA~~aa~-~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVV-VVGSGFAGLSAALSAKK-AGAANVVLLEKMPV 34 (439)
T ss_pred CEE-EECCCHHHHHHHHHHHH-cCCccEEEEecCCC
Confidence 788 99999999999999998 47 89999999764
No 117
>PTZ00367 squalene epoxidase; Provisional
Probab=97.56 E-value=0.00012 Score=62.22 Aligned_cols=37 Identities=35% Similarity=0.322 Sum_probs=33.2
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
....+|++ |||||.+|+++|..|++ .+.+|+|+|+..
T Consensus 30 ~~~~~dVi-IVGaGiaGlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVI-IVGGSIAGPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred cccCccEE-EECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 44579999 99999999999999998 589999999975
No 118
>PRK13748 putative mercuric reductase; Provisional
Probab=97.55 E-value=0.00011 Score=61.12 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=31.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..||++ |||+|++|+.+|.++++ .+.+|+|||++.
T Consensus 97 ~~~Dvv-VIG~GpaG~~aA~~~~~-~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVA-VIGSGGAAMAAALKAVE-QGARVTLIERGT 131 (561)
T ss_pred CCCCEE-EECcCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 469999 99999999999999998 589999999874
No 119
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.55 E-value=0.00016 Score=51.37 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=28.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
|++ |||||.||+.+|.+|.. .+.+|+++|+.+
T Consensus 1 ~vv-IIGgG~aGl~aA~~l~~-~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVV-IIGGGPAGLSAALELAR-PGAKVLIIEKSP 32 (201)
T ss_dssp EEE-EESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred CEE-EEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence 578 99999999999999996 799999997754
No 120
>PTZ00058 glutathione reductase; Provisional
Probab=97.55 E-value=0.00014 Score=61.70 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=32.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..||++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus 47 ~~yDvv-VIG~G~aG~~aA~~aa~-~G~~ValIEk~~~ 82 (561)
T PTZ00058 47 MVYDLI-VIGGGSGGMAAARRAAR-NKAKVALVEKDYL 82 (561)
T ss_pred ccccEE-EECcCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 469999 99999999999999998 5899999998643
No 121
>PRK06834 hypothetical protein; Provisional
Probab=97.55 E-value=0.00012 Score=60.72 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=32.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus 2 ~~~dVl-IVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVV-IAGGGPTGLMLAGELAL-AGVDVAIVERRPN 37 (488)
T ss_pred CcceEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 358999 99999999999999998 5899999998764
No 122
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.55 E-value=0.00012 Score=58.08 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=29.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
|++ |||||.+|+++|.+|++ .+.+|+|||++.
T Consensus 2 ~v~-IVG~Gi~Gls~A~~l~~-~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVV-VLGSGVIGVTSAWYLAQ-AGHEVTVIDRQP 33 (416)
T ss_pred EEE-EECCcHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 788 99999999999999998 489999999975
No 123
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.54 E-value=0.00012 Score=52.24 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=24.1
Q ss_pred EeCccHHHHHHHHHHHHhcCCe-EEEEcCCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWS-VLLLEAGPDE 76 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~~ 76 (107)
|||||++|+++|.+|.+. +.+ |+|||++...
T Consensus 2 IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 2 IIGAGPAGLAAAAHLLER-GIDPVVVLERNDRP 33 (203)
T ss_dssp EE--SHHHHHHHHHHHHT-T---EEEEESSSSS
T ss_pred EECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Confidence 899999999999999985 777 9999998654
No 124
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.54 E-value=0.00011 Score=62.71 Aligned_cols=34 Identities=41% Similarity=0.586 Sum_probs=31.2
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+|++ |||||.+|+++|..|++ .+.+|+|||++.
T Consensus 260 ~~dVv-IIGaGIaG~s~A~~La~-~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAA-IIGGGIAGAALALALAR-RGWQVTLYEADE 293 (662)
T ss_pred CCCEE-EECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 47999 99999999999999998 489999999974
No 125
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.54 E-value=0.00011 Score=61.74 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=31.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEA 72 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEa 72 (107)
..+|++ |||||.+|+++|+.|++. ++++|+|+|+
T Consensus 5 ~~~Dvv-IIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 5 ESKDVV-LVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred ccCCEE-EECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 468999 999999999999999983 5799999999
No 126
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.53 E-value=0.00012 Score=62.26 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=32.5
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
||++ |||+|++|+++|+.|++ .+++|++||++....
T Consensus 1 ~dv~-ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVF-IAGSGPIGCTYARLCVD-AGLKVAMVEIGAADS 36 (544)
T ss_pred CcEE-EECCchHHHHHHHHHHH-CCCeEEEEeccCccC
Confidence 6999 99999999999999998 479999999987653
No 127
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.53 E-value=0.00012 Score=61.69 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=32.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus 2 ~~~DVl-VIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVV-IVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEE-EECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 357999 999999999999999974 2589999999864
No 128
>PRK07233 hypothetical protein; Provisional
Probab=97.52 E-value=0.00013 Score=57.53 Aligned_cols=34 Identities=32% Similarity=0.453 Sum_probs=29.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+++ |||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus 1 ~vv-VIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIA-IVGGGIAGLAAAYRLAK-RGHEVTVFEADDQL 34 (434)
T ss_pred CEE-EECCCHHHHHHHHHHHH-CCCcEEEEEeCCCC
Confidence 367 99999999999999998 48999999997643
No 129
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.52 E-value=0.00014 Score=60.44 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=30.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
.||++ |||+|++|..+|.++++ .+.+|+|||+
T Consensus 5 ~yDvi-VIG~GpaG~~AA~~aa~-~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLV-VIGGGSGGMAAAKEAAA-HGKKVALFDY 36 (499)
T ss_pred ccCEE-EECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 58999 99999999999999998 5899999996
No 130
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.51 E-value=0.00014 Score=61.78 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=33.1
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
....+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 9 ~~~~~DVv-VIG~G~AGl~AAl~Aa~-~G~~V~lveK~~~ 46 (598)
T PRK09078 9 IDHKYDVV-VVGAGGAGLRATLGMAE-AGLKTACITKVFP 46 (598)
T ss_pred cccccCEE-EECccHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence 33568999 99999999999999998 5789999999754
No 131
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.50 E-value=0.00014 Score=60.42 Aligned_cols=37 Identities=41% Similarity=0.387 Sum_probs=32.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
.+||++ |||||..|+++|..|++. |.++|+|||+-..
T Consensus 2 ~~~Dvv-IIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~ 39 (429)
T COG0579 2 MDYDVV-IIGGGIMGAATAYELSEYEPDLSVALLEKEDG 39 (429)
T ss_pred CceeEE-EECCcHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 569999 999999999999999994 4599999999654
No 132
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.50 E-value=0.00014 Score=59.47 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.1
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
-|++ |||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus 2 ~dvv-IIGaG~~GL~aa~~La~-~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVV-VIGAGIAGLTAAALLAK-RGYRVTLLEQHAQP 36 (492)
T ss_pred CeEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 4788 99999999999999998 59999999997543
No 133
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.50 E-value=0.00014 Score=60.94 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=33.4
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...+|++ |||+|.||+.+|.++++ .+.+|+|||++...
T Consensus 14 ~~~~DVl-VIG~G~AGl~AAi~aae-~G~~VilleK~~~~ 51 (541)
T PRK07804 14 RDAADVV-VVGSGVAGLTAALAARR-AGRRVLVVTKAALD 51 (541)
T ss_pred ccccCEE-EECccHHHHHHHHHHHH-cCCeEEEEEccCCC
Confidence 3468999 99999999999999998 58899999998653
No 134
>PRK08275 putative oxidoreductase; Provisional
Probab=97.49 E-value=0.00014 Score=60.95 Aligned_cols=37 Identities=35% Similarity=0.430 Sum_probs=32.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus 8 ~~~DVl-VIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDIL-VIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEE-EECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 458999 999999999999999874 3689999999875
No 135
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.49 E-value=0.00015 Score=59.53 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=30.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 2 ~DVv-VVGaG~AGl~AAi~aae-~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVG-IVGGGLAGLTAAISLAK-KGFDVTIIGPGIK 35 (466)
T ss_pred CeEE-EECccHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 6999 99999999999999998 5899999999753
No 136
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.48 E-value=0.00015 Score=61.49 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=31.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 2 ~~~DVl-VVG~G~AGl~AAi~Aa~-~G~~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVI-VVGGGLAGLMATIKAAE-AGVHVDLFSLVPV 37 (589)
T ss_pred CCccEE-EECchHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence 346999 99999999999999988 5899999998754
No 137
>PLN02815 L-aspartate oxidase
Probab=97.47 E-value=0.00021 Score=60.96 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=34.0
Q ss_pred ccCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 33 HSLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 33 ~~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+......+|++ |||+|.||+.+|.++++. + +|+|||+....
T Consensus 23 ~~~~~~~~DVl-VVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~ 63 (594)
T PLN02815 23 DDESTKYFDFL-VIGSGIAGLRYALEVAEY-G-TVAIITKDEPH 63 (594)
T ss_pred ccCcccccCEE-EECccHHHHHHHHHHhhC-C-CEEEEECCCCC
Confidence 34455568999 999999999999999884 6 89999997653
No 138
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.47 E-value=0.00016 Score=61.78 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=32.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++ .+.+|+|||+...
T Consensus 7 ~~~DVv-VIG~G~AGl~AAl~Aae-~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVV-VIGAGGAGLRAAIEARE-RGLRVAVVCKSLF 42 (626)
T ss_pred eeecEE-EECcCHHHHHHHHHHHH-CCCCEEEEeccCC
Confidence 468999 99999999999999988 5899999999754
No 139
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.47 E-value=0.00018 Score=59.80 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.8
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...+|++ |||+|++|+++|..|.+ .+.+|+|||+....
T Consensus 8 ~~~~dV~-IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVV-IVGAGPVGLTLANLLGQ-YGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 4568999 99999999999999998 58999999998643
No 140
>PRK07538 hypothetical protein; Provisional
Probab=97.46 E-value=0.00016 Score=57.76 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=30.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|++ |||||.+|+++|..|++ .+.+|+|+|+.+.
T Consensus 2 dV~-IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVL-IAGGGIGGLTLALTLHQ-RGIEVVVFEAAPE 34 (413)
T ss_pred eEE-EECCCHHHHHHHHHHHh-CCCcEEEEEcCCc
Confidence 788 99999999999999998 5899999999764
No 141
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.46 E-value=0.00014 Score=59.45 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=28.4
Q ss_pred EEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 43 PVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 43 i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+ |||+|.+|+++|.+|++ .+.+|+|+|+...
T Consensus 2 v-VIGaG~~GL~aA~~La~-~G~~V~VlE~~~~ 32 (502)
T TIGR02734 2 V-VIGAGFGGLALAIRLAA-AGIPVTVVEQRDK 32 (502)
T ss_pred E-EECcCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence 5 99999999999999998 5899999999764
No 142
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.45 E-value=0.00018 Score=59.03 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=30.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
..||++ |||+|++|+.+|.++++ .+.+|+|||+
T Consensus 3 ~~~Dvi-IIG~G~aG~~aA~~~~~-~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVV-VIGAGPGGYVAAIRAAQ-LGLKVACIEA 35 (475)
T ss_pred cceeEE-EECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 359999 99999999999999998 5899999998
No 143
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.45 E-value=0.00018 Score=60.77 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=32.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 4 ~~~DVv-VVG~G~AGl~AAl~Aae-~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAV-VIGGGLAGLMSAHEIAS-AGFKVAVISKVFP 39 (566)
T ss_pred ccCcEE-EECccHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence 458999 99999999999999988 5899999999754
No 144
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.45 E-value=0.00023 Score=59.19 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=33.2
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+|++ |||+|++|+++|..|++ .+.+|+|||+...
T Consensus 21 ~~~~dVl-IVGaGpaGl~lA~~L~~-~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVV-VVGAGPVGLALAIDLAQ-QGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence 3568999 99999999999999998 5999999999864
No 145
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.45 E-value=0.00019 Score=60.45 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=32.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.+|+++|.++++ .+.+|+|||+...
T Consensus 8 ~~~DVv-VVG~G~aGl~AA~~aa~-~G~~v~llEk~~~ 43 (574)
T PRK12842 8 LTCDVL-VIGSGAGGLSAAITARK-LGLDVVVLEKEPV 43 (574)
T ss_pred CCCCEE-EECcCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 368999 99999999999999998 5889999999764
No 146
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.44 E-value=0.00019 Score=59.66 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=31.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
..||++ |||+|++|..+|.++++..+.+|+|||++
T Consensus 2 ~~~Dvi-VIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLV-VIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEE-EECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 359999 99999999999999998437999999973
No 147
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.43 E-value=0.00021 Score=60.74 Aligned_cols=37 Identities=27% Similarity=0.183 Sum_probs=32.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..+|++ |||+|.||+.+|.++++ .+.+|+|||++...
T Consensus 6 ~~~DVl-VVG~G~AGl~AAi~Aa~-~G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAV-VIGAGGAGMRAALQISQ-SGQSCALLSKVFPT 42 (588)
T ss_pred cccCEE-EECccHHHHHHHHHHHH-cCCcEEEEEccCCC
Confidence 358999 99999999999999988 58999999998543
No 148
>PRK10262 thioredoxin reductase; Provisional
Probab=97.42 E-value=0.00022 Score=55.13 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
...+|++ |||+|+||+.+|..|.+ .+.+|++||..
T Consensus 4 ~~~~~vv-IIGgGpaGl~aA~~l~~-~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLL-ILGSGPAGYTAAVYAAR-ANLQPVLITGM 38 (321)
T ss_pred CCcCCEE-EECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence 4568999 99999999999999998 47889999864
No 149
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.41 E-value=0.00021 Score=60.64 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.+|+++|.++++ .+.+|+|||++..
T Consensus 10 ~~~DVv-VVG~G~AGl~AA~~aae-~G~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVL-VVGSGGGGMTAALTAAA-RGLDTLVVEKSAH 45 (584)
T ss_pred CcCCEE-EECccHHHHHHHHHHHH-CCCcEEEEEcCCC
Confidence 358999 99999999999999988 5899999998764
No 150
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.41 E-value=0.00031 Score=60.84 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
..||++ |||+|++|..+|.++++ .+.+|+|||.+
T Consensus 115 ~~yDvi-VIG~G~gG~~aA~~aa~-~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVG-IIGCGVGGHAAAINAME-RGLKVIIFTGD 148 (659)
T ss_pred ccCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 368999 99999999999999998 59999999965
No 151
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00026 Score=56.09 Aligned_cols=36 Identities=36% Similarity=0.459 Sum_probs=30.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~ 75 (107)
..||++ |||+|+||+.+|..+.. .+++ ++|+|.+..
T Consensus 2 ~~~Dvi-IIG~GPAGl~AAiya~r-~~l~~~li~~~~~~ 38 (305)
T COG0492 2 KIYDVI-IIGGGPAGLTAAIYAAR-AGLKVVLILEGGEP 38 (305)
T ss_pred ceeeEE-EECCCHHHHHHHHHHHH-cCCCcEEEEecCCc
Confidence 469999 99999999999999997 5777 788887543
No 152
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.40 E-value=0.00022 Score=59.43 Aligned_cols=47 Identities=32% Similarity=0.382 Sum_probs=36.7
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC-CCC---Ccccchhh
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP-DEN---EVTDVPSL 85 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~-~~~---~~~~iP~~ 85 (107)
+..||++ |||+|++|..+|.++++. +.+|++||+++ ... +.-.+|.-
T Consensus 2 ~~~yDvv-VIG~GpaG~~aA~raa~~-G~kvalvE~~~~lGGtCln~GCIPsK 52 (454)
T COG1249 2 MKEYDVV-VIGAGPAGYVAAIRAAQL-GLKVALVEKGERLGGTCLNVGCIPSK 52 (454)
T ss_pred CccccEE-EECCCHHHHHHHHHHHhC-CCCEEEEeecCCcCceEEeeCccccH
Confidence 3569999 999999999999999995 66699999995 432 33445553
No 153
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.40 E-value=0.00017 Score=58.85 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=31.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..+|++ |||+|.||+.+|..+. .+.+|+|||++...
T Consensus 3 ~~~DVv-VVG~G~AGl~AA~~a~--~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVL-IVGSGVAGLYSALNLR--KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEE-EECchHHHHHHHHHhc--cCCCEEEEecCCCC
Confidence 358999 9999999999999974 48999999998653
No 154
>PLN02507 glutathione reductase
Probab=97.40 E-value=0.0002 Score=59.47 Aligned_cols=34 Identities=24% Similarity=0.066 Sum_probs=30.9
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
..+||++ |||+|++|..+|.++++ .+.+|+|||+
T Consensus 23 ~~~yDvv-VIG~GpaG~~aA~~a~~-~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLF-VIGAGSGGVRAARFSAN-FGAKVGICEL 56 (499)
T ss_pred ccccCEE-EECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 3469999 99999999999999998 5899999995
No 155
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.39 E-value=0.00021 Score=59.85 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=29.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|++ |||+|.||+.+|..+++ .+.+|+|||++..
T Consensus 1 DVl-VVG~G~AGl~AA~~aae-~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVV-IVGAGLAGLRAAVEAAK-AGLNTAVISKVYP 33 (566)
T ss_pred CEE-EECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence 788 99999999999999998 4899999999754
No 156
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.39 E-value=0.00021 Score=60.88 Aligned_cols=37 Identities=30% Similarity=0.286 Sum_probs=32.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus 10 ~~~DVl-VIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDIL-IIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eEeCEE-EECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 458999 999999999999999884 3889999999864
No 157
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.38 E-value=0.00029 Score=59.32 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=33.4
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
....+|++ |||+|.+|+++|.++++ .+.+|+|||+...
T Consensus 4 ~~~~~Dvv-VvG~G~aG~~aA~~aa~-~G~~v~llEk~~~ 41 (557)
T PRK07843 4 TVQEYDVV-VVGSGAAGMVAALTAAH-RGLSTVVVEKAPH 41 (557)
T ss_pred CCCcCCEE-EECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence 34578999 99999999999999998 5899999999653
No 158
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.38 E-value=0.00025 Score=57.43 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=29.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhc-----CCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVA-----HWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~-----~~~VlvIEag~~ 75 (107)
+++ |||||.+|+++|++|.+.. +.+|+|+|+.+.
T Consensus 3 ~v~-VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r 41 (463)
T PRK12416 3 TVV-VIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY 41 (463)
T ss_pred eEE-EECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence 577 9999999999999999742 479999999754
No 159
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.37 E-value=0.00024 Score=59.86 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=31.8
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhc--CCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVA--HWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~--~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++.. +.+|+|||++..
T Consensus 4 ~~~DVl-VVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVV-IVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEE-EECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 358999 9999999999999999853 189999999764
No 160
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.36 E-value=0.00028 Score=60.51 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=33.7
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...+|++ |||||++|+++|..|++..+.+|.|||+.+..
T Consensus 30 ~~~~dVl-IVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 30 PDEVDVL-IVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCCCEE-EECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 4478999 99999999999999997338999999987643
No 161
>PRK05868 hypothetical protein; Validated
Probab=97.35 E-value=0.00031 Score=55.84 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=31.1
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.|++ |||||.+|+++|..|++ .+++|.|+|+.+..
T Consensus 2 ~~V~-IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVV-VSGASVAGTAAAYWLGR-HGYSVTMVERHPGL 36 (372)
T ss_pred CeEE-EECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Confidence 3788 99999999999999998 58999999997654
No 162
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.34 E-value=0.00026 Score=60.83 Aligned_cols=36 Identities=25% Similarity=0.164 Sum_probs=32.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 49 ~~~DVl-VIG~G~AGl~AAl~Aae-~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAV-VVGAGGAGLRAAIGLSE-HGFNTACITKLFP 84 (635)
T ss_pred eecCEE-EECccHHHHHHHHHHHh-cCCcEEEEEcCCC
Confidence 358999 99999999999999988 5899999999864
No 163
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.33 E-value=0.00025 Score=59.34 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=31.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++ + .+.+|+|||++..
T Consensus 6 ~~~DVl-VVG~G~AGl~AAi~A-~-~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVL-IIGSGGAGARAAIEA-E-RGKNVVIVSKGLF 40 (543)
T ss_pred eccCEE-EECccHHHHHHHHHH-h-cCCCEEEEEccCC
Confidence 357999 999999999999999 6 5899999999754
No 164
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.33 E-value=0.00031 Score=60.34 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=31.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..+|++ |||+|.||+++|.++++ .+.+|+|||+..
T Consensus 34 ~~~DVl-VVG~G~AGl~AAi~Aae-~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVI-VVGTGLAGASAAATLGE-LGYNVKVFCYQD 68 (640)
T ss_pred cccCEE-EECccHHHHHHHHHHHH-cCCcEEEEecCC
Confidence 368999 99999999999999988 589999999754
No 165
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.32 E-value=0.00028 Score=60.76 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=32.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..+|++ |||+|.||+.+|.++++ .+.+|+|||+....
T Consensus 4 ~~~DVl-VIG~G~AGl~AAi~Aae-~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDAL-VIGAGLAGLRVAIAAAQ-RGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEE-EECccHHHHHHHHHHHH-cCCCEEEEeCCCCC
Confidence 358999 99999999999999998 58999999987654
No 166
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.32 E-value=0.0003 Score=59.63 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=32.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++. ++.+|+|||++..
T Consensus 3 ~~~DVl-VVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLA-IIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred eeeeEE-EECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 358999 999999999999999874 3579999999854
No 167
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.32 E-value=0.00033 Score=59.07 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=31.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++|++ |||+|.+|+++|.++++ .+.+|+|||+...
T Consensus 5 ~~~Dvv-IiG~G~aGl~aA~~~a~-~G~~v~liEk~~~ 40 (557)
T PRK12844 5 ETYDVV-VVGSGGGGMCAALAAAD-SGLEPLIVEKQDK 40 (557)
T ss_pred CcCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 368999 99999999999999998 4899999998643
No 168
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.29 E-value=0.00029 Score=59.53 Aligned_cols=36 Identities=28% Similarity=0.236 Sum_probs=31.3
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+|++ |||+|.||+++|.++.+ +.+|+|||++..
T Consensus 7 ~~e~DVl-VVG~G~AGl~AAi~A~~--G~~V~lieK~~~ 42 (553)
T PRK07395 7 PSQFDVL-VVGSGAAGLYAALCLPS--HLRVGLITKDTL 42 (553)
T ss_pred cccCCEE-EECccHHHHHHHHHhhc--CCCEEEEEccCC
Confidence 3458999 99999999999999864 789999999764
No 169
>PLN02546 glutathione reductase
Probab=97.28 E-value=0.00033 Score=59.45 Aligned_cols=32 Identities=25% Similarity=0.149 Sum_probs=30.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
.||++ |||+|++|..+|.++++ .+.+|+|||+
T Consensus 79 ~yDvv-VIG~GpaG~~aA~~aa~-~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLF-TIGAGSGGVRASRFASN-FGASAAVCEL 110 (558)
T ss_pred CCCEE-EECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 58999 99999999999999998 5999999995
No 170
>KOG1298|consensus
Probab=97.28 E-value=0.00031 Score=58.55 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
....+|+| |||+|.+|+++|+.|+++ +.+|+|||+.-.+
T Consensus 42 ~~~~~DvI-IVGAGV~GsaLa~~L~kd-GRrVhVIERDl~E 80 (509)
T KOG1298|consen 42 NDGAADVI-IVGAGVAGSALAYALAKD-GRRVHVIERDLSE 80 (509)
T ss_pred cCCcccEE-EECCcchHHHHHHHHhhC-CcEEEEEeccccc
Confidence 44568999 999999999999999984 8999999997544
No 171
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.28 E-value=0.00034 Score=59.19 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=30.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++ . .+|+|||++..
T Consensus 4 ~~~DVl-VIG~G~AGl~AAl~aa~-~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVV-IVGAGGAGMRAAIEAGP-R-ARTAVLTKLYP 38 (583)
T ss_pred eeccEE-EECccHHHHHHHHHHHh-C-CCEEEEeCCCC
Confidence 358999 99999999999999987 3 89999999754
No 172
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.27 E-value=0.0004 Score=55.33 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=30.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
-+++ |||||.+|+++|..|++ .+++|.|+|+.+.
T Consensus 3 ~~V~-IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPL-IAGAGVAGLSAALELAA-RGWAVTIIEKAQE 36 (400)
T ss_pred CcEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 3678 99999999999999998 6899999998764
No 173
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.27 E-value=0.00039 Score=55.50 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=29.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.++ |||||.+|+++|..|++.++.+|.|+|+.+..
T Consensus 2 ~V~-IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVA-IIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEE-EECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 467 99999999999999998544799999997653
No 174
>PRK14727 putative mercuric reductase; Provisional
Probab=97.26 E-value=0.00044 Score=56.87 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=31.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..||++ |||+|++|..+|.+|++ .+.+|++||++.
T Consensus 15 ~~~dvv-vIG~G~aG~~~a~~~~~-~g~~v~~ie~~~ 49 (479)
T PRK14727 15 LQLHVA-IIGSGSAAFAAAIKAAE-HGARVTIIEGAD 49 (479)
T ss_pred CCCcEE-EECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 468999 99999999999999998 588999999873
No 175
>PLN02568 polyamine oxidase
Probab=97.25 E-value=0.00051 Score=58.00 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=31.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhc----CCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVA----HWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~----~~~VlvIEag~~~ 76 (107)
...|++ |||+|.+|+++|.+|.+.. +.+|+|+|+....
T Consensus 4 ~~~~v~-iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIV-IIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEE-EECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 346899 9999999999999999743 3899999997643
No 176
>KOG2415|consensus
Probab=97.23 E-value=0.00034 Score=59.00 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=32.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHh-----cCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEV-----AHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~-----~~~~VlvIEag~~ 75 (107)
..+|++ |||+|+||+++|.||.+- ..++|+|+|++..
T Consensus 75 e~~Dv~-IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~ 116 (621)
T KOG2415|consen 75 EEVDVV-IVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE 116 (621)
T ss_pred ccccEE-EECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence 468999 999999999999999762 4689999999764
No 177
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.22 E-value=0.0006 Score=56.46 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=32.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...+++ |||||++|+++|.+|.+ .+.+|+|+|++..-
T Consensus 9 ~~~~Va-IIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~v 45 (461)
T PLN02172 9 NSQHVA-VIGAGAAGLVAARELRR-EGHTVVVFEREKQV 45 (461)
T ss_pred CCCCEE-EECCcHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence 347899 99999999999999998 48999999997643
No 178
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.22 E-value=0.00041 Score=57.85 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.1
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
++|++ |||+|.||+.+|.++.+ +.+|+|||+....
T Consensus 3 ~~DVl-VVG~G~AGl~AAl~a~~--g~~V~lveK~~~~ 37 (510)
T PRK08071 3 SADVI-IIGSGIAALTVAKELCH--EYNVIIITKKTKR 37 (510)
T ss_pred ccCEE-EECccHHHHHHHHHhhc--CCCEEEEeccCCC
Confidence 57999 99999999999999875 6899999998653
No 179
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.21 E-value=0.00048 Score=56.75 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=31.1
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.||++ |||+|.+|+.+|.++++ .+.+|+|||++.
T Consensus 2 ~~Dvi-IIG~G~aGl~aA~~la~-~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVL-VIGGGLAGLTAALAAAE-AGKRVALVAKGQ 35 (422)
T ss_pred CCCEE-EECccHHHHHHHHHHHH-CCCcEEEEECCC
Confidence 48999 99999999999999998 589999999874
No 180
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.21 E-value=0.00047 Score=55.65 Aligned_cols=31 Identities=32% Similarity=0.400 Sum_probs=28.3
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
++ |||+|.+|+++|.+|.+ .+.+|+|+|+.+
T Consensus 2 v~-IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~ 32 (453)
T TIGR02731 2 VA-IAGAGLAGLSCAKYLAD-AGHTPIVLEARD 32 (453)
T ss_pred EE-EECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 56 99999999999999998 589999999975
No 181
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.19 E-value=0.00047 Score=58.57 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=32.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~ 76 (107)
.+|++ |||+|.||+.+|..+++. ++.+|+|||++...
T Consensus 3 ~~DVl-VIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~ 40 (580)
T TIGR01176 3 QHDIA-VIGAGGAGLRAAIAAAEANPHLDVALISKVYPM 40 (580)
T ss_pred ceeEE-EECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 57999 999999999999999874 36899999997643
No 182
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.19 E-value=0.0005 Score=56.99 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=30.3
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.||++ |||+|++|..+|.++++ .+.+|++||+.
T Consensus 2 ~yDvv-VIG~G~aG~~aA~~aa~-~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLI-VIGGGSGGLAAAKEAAD-YGAKVMLLDFV 34 (484)
T ss_pred ccCEE-EECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 48999 99999999999999998 58999999973
No 183
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.18 E-value=0.00048 Score=57.69 Aligned_cols=35 Identities=37% Similarity=0.500 Sum_probs=31.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.++++ . .+|+|||++..
T Consensus 7 ~~~DVl-VVG~G~AGl~AA~~aa~-~-~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVL-IIGSGAAGLSLALRLAE-H-RRVAVLSKGPL 41 (536)
T ss_pred ccCCEE-EECchHHHHHHHHHHHH-C-CCEEEEeccCC
Confidence 458999 99999999999999987 3 79999999764
No 184
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00055 Score=57.19 Aligned_cols=38 Identities=32% Similarity=0.343 Sum_probs=33.6
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
....|+| |||+|.+|+++|+.|.+ .+++|+|+|+.+..
T Consensus 5 ~~~~~vi-ivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVI-IVGAGLAGLSAAYELKK-AGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEE-EECCchHHHHHHHHHhh-cCcEEEEEeccCCc
Confidence 4567999 99999999999999998 59999999997653
No 185
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.18 E-value=0.00052 Score=56.66 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=29.9
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.+|++ |||+|.||+.+|..+++. +. |+|||+...
T Consensus 2 ~~DVl-VVG~G~AGl~AA~~aa~~-G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVV-VIGSGAAGLSAALALADQ-GR-VIVLSKAPV 35 (488)
T ss_pred CccEE-EECccHHHHHHHHHHHhC-CC-EEEEEccCC
Confidence 47999 999999999999999984 55 999999854
No 186
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.17 E-value=0.00077 Score=57.12 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=31.9
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...++|++ |||+| +|+++|...++ .+.+|+|||+.+.
T Consensus 13 ~d~e~Dvv-vvG~G-~G~~aA~~a~~-~G~~v~v~Ek~~~ 49 (564)
T PRK12845 13 RDTTVDLL-VVGSG-TGMAAALAAHE-LGLSVLIVEKSSY 49 (564)
T ss_pred CCceeCEE-EECCc-HHHHHHHHHHH-CCCcEEEEecCCC
Confidence 44579999 99999 89999999887 5899999999743
No 187
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00063 Score=56.04 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=33.2
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGPDE 76 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~~ 76 (107)
....+|++ |||||.+|+++|.+|.+. +.. ++|+|+....
T Consensus 5 ~~~~~~v~-IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~ 44 (443)
T COG2072 5 VATHTDVA-IIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDV 44 (443)
T ss_pred cCCcccEE-EECCCHHHHHHHHHHHHc-CCCcEEEEEccCCc
Confidence 45578999 999999999999999984 555 9999998643
No 188
>PRK12839 hypothetical protein; Provisional
Probab=97.14 E-value=0.00072 Score=57.33 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=32.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.+|+++|..+++ .+.+|+|||++..
T Consensus 7 ~~~dv~-ViG~G~aG~~aa~~~~~-~g~~v~~iek~~~ 42 (572)
T PRK12839 7 HTYDVV-VVGSGAGGLSAAVAAAY-GGAKVLVVEKAST 42 (572)
T ss_pred CcCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 468999 99999999999999988 4899999998753
No 189
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.13 E-value=0.00066 Score=56.42 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=30.9
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
...||++ |||||+||+.+|.++++ .+.+|+||+..
T Consensus 209 ~~~~dvv-IIGgGpaGl~aA~~la~-~G~~v~li~~~ 243 (517)
T PRK15317 209 KDPYDVL-VVGGGPAGAAAAIYAAR-KGIRTGIVAER 243 (517)
T ss_pred CCCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEecC
Confidence 3469999 99999999999999998 58999999863
No 190
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.13 E-value=0.00059 Score=60.54 Aligned_cols=37 Identities=35% Similarity=0.348 Sum_probs=32.9
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+|++ |||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 11 ~~~~DVl-VVG~G~AGl~AAl~Aa~-~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVL-VIGGGTAGTMAALTAAE-HGANVLLLEKAHV 47 (897)
T ss_pred eeecCEE-EECcCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 3468999 99999999999999987 5899999999875
No 191
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.11 E-value=0.00063 Score=58.46 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=30.0
Q ss_pred ceEEEeCccHHHHHHHHHHHH---hcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSE---VAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~---~~~~~VlvIEag~~~ 76 (107)
|++ |||+|.||+.+|.++++ ..+.+|+|||++...
T Consensus 1 DVl-VIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLL-IVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEE-EECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 788 99999999999999972 258899999998653
No 192
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.07 E-value=0.00079 Score=61.39 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=32.7
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+..+|+| |||+|.||+++|.+.++ .+.+|+|||+++.
T Consensus 407 t~~~DVv-VVG~G~AGl~AAi~Aae-~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 407 SLPARVI-VVGGGLAGCSAAIEAAS-CGAQVILLEKEAK 443 (1167)
T ss_pred CCCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence 3458999 99999999999999988 5899999999764
No 193
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.07 E-value=0.00079 Score=55.98 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.4
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
...||++ |||||+||+.+|.+|++ .+.+|+|||.
T Consensus 210 ~~~~dVv-IIGgGpAGl~AA~~la~-~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVL-VVGGGPAGAAAAIYAAR-KGLRTAMVAE 243 (515)
T ss_pred cCCCCEE-EECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 4469999 99999999999999998 6899999975
No 194
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.06 E-value=0.00086 Score=53.67 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=29.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+++ |||+|.+|+++|+.|++ .+.+|.|+|+|.
T Consensus 3 sia-IVGaGiAGl~aA~~L~~-aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIA-IVGAGIAGLAAAYALRE-AGREVTVFEKGR 34 (331)
T ss_pred cEE-EEccchHHHHHHHHHHh-cCcEEEEEEcCC
Confidence 577 99999999999999998 599999999975
No 195
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.06 E-value=0.00079 Score=56.08 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
-|++ |||||.+|+.+|..|++ .+.+|.|+|..+..
T Consensus 3 ~dVv-VIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVN-VIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK 37 (436)
T ss_pred CcEE-EECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence 4888 99999999999999998 58999999976543
No 196
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.05 E-value=0.00086 Score=54.72 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=30.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+++ |||+|++|..+|.++++ .+.+|+|||++...
T Consensus 2 ~vv-VIG~G~aG~~aA~~~~~-~g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLV-VIGGGPAGYVAAITAAQ-NGKNVTLIDEADLG 35 (458)
T ss_pred eEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCccc
Confidence 577 99999999999999998 58999999997543
No 197
>PLN02676 polyamine oxidase
Probab=97.05 E-value=0.001 Score=55.36 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=31.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~ 75 (107)
..+|++ |||+|.+|+++|.+|.+. +. +|+|+|++..
T Consensus 25 ~~~~v~-IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVI-IVGAGMSGISAAKTLSEA-GIEDILILEATDR 61 (487)
T ss_pred CCCCEE-EECCCHHHHHHHHHHHHc-CCCcEEEecCCCC
Confidence 357999 999999999999999985 66 6999999764
No 198
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.03 E-value=0.0011 Score=56.39 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=35.6
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
.+..+|++ |||||..|+-+|..++. .+++|+|+|+++...
T Consensus 9 ~~~~~Dvi-VIGGGitG~GiArDaA~-RGl~v~LvE~~D~As 48 (532)
T COG0578 9 RMEEFDVI-VIGGGITGAGIARDAAG-RGLKVALVEKGDLAS 48 (532)
T ss_pred cccCCCEE-EECCchhhHHHHHHHHh-CCCeEEEEecCcccC
Confidence 34779999 99999999999999998 699999999998654
No 199
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.01 E-value=0.0011 Score=54.87 Aligned_cols=38 Identities=34% Similarity=0.452 Sum_probs=33.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
..+|+| |||+|.||+++|.+|++ .+.+|+++|....++
T Consensus 4 ~~~dvi-vvgaglaglvaa~elA~-aG~~V~ildQEgeqn 41 (552)
T COG3573 4 LTADVI-VVGAGLAGLVAAAELAD-AGKRVLILDQEGEQN 41 (552)
T ss_pred ccccEE-EECccHHHHHHHHHHHh-cCceEEEEccccccc
Confidence 468999 99999999999999998 699999999876554
No 200
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.00 E-value=0.00092 Score=55.17 Aligned_cols=45 Identities=33% Similarity=0.462 Sum_probs=29.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhc--CCeEEEEcCCCCCC---Ccccchhhh
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVA--HWSVLLLEAGPDEN---EVTDVPSLA 86 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~--~~~VlvIEag~~~~---~~~~iP~~~ 86 (107)
|++ |||||+||..+|..|++.. .++|.|||...... ....+|.+.
T Consensus 1 ~v~-IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~ 50 (454)
T PF04820_consen 1 DVV-IVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLR 50 (454)
T ss_dssp EEE-EE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHH
T ss_pred CEE-EECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHH
Confidence 577 9999999999999999842 28999999987654 234455443
No 201
>PRK12831 putative oxidoreductase; Provisional
Probab=96.99 E-value=0.0015 Score=53.87 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=32.3
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
....+++ |||+|+||+.+|..|++ .+.+|+|+|+...
T Consensus 138 ~~~~~V~-IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~ 174 (464)
T PRK12831 138 KKGKKVA-VIGSGPAGLTCAGDLAK-MGYDVTIFEALHE 174 (464)
T ss_pred CCCCEEE-EECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 3457999 99999999999999998 5899999998653
No 202
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.99 E-value=0.00064 Score=54.88 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=27.4
Q ss_pred EeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|||+|.+|+++|.++++ .+.+|+|+|+.+.
T Consensus 2 IIGgG~aGl~aAi~aa~-~G~~V~llEk~~~ 31 (400)
T TIGR00275 2 IIGGGAAGLMAAITAAR-EGLSVLLLEKNKK 31 (400)
T ss_pred EEEEeHHHHHHHHHHHh-cCCcEEEEecCcc
Confidence 89999999999999998 5899999998764
No 203
>PRK07846 mycothione reductase; Reviewed
Probab=96.98 E-value=0.00099 Score=54.55 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=32.2
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC---Ccccchhh
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN---EVTDVPSL 85 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~---~~~~iP~~ 85 (107)
+||++ |||+|++|..+|.+. .+.+|+|||++.... +.-.+|.-
T Consensus 1 ~yD~v-VIG~G~~g~~aa~~~---~G~~V~lie~~~~GGtC~n~GCiPsK 46 (451)
T PRK07846 1 HYDLI-IIGTGSGNSILDERF---ADKRIAIVEKGTFGGTCLNVGCIPTK 46 (451)
T ss_pred CCCEE-EECCCHHHHHHHHHH---CCCeEEEEeCCCCCCcccCcCcchhH
Confidence 38999 999999999888763 389999999865442 23345653
No 204
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.96 E-value=0.0013 Score=55.73 Aligned_cols=37 Identities=24% Similarity=0.237 Sum_probs=32.6
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
....+|++ |||+|.+|+++|..+.+ .+.+|+|||+..
T Consensus 9 ~~~~~dvv-vvG~G~aG~~aa~~~~~-~g~~v~~iek~~ 45 (581)
T PRK06134 9 PDLECDVL-VIGSGAAGLSAAVTAAW-HGLKVIVVEKDP 45 (581)
T ss_pred CCCccCEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 34468999 99999999999999998 589999999865
No 205
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.95 E-value=0.0012 Score=57.44 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=32.4
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
...++++ |||||.+|+++|..|.+ .+.+|.|+|+..
T Consensus 79 ~~~~~Vl-IVGgGIaGLalAlaL~r-~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVL-VAGGGIGGLVFALAAKK-KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEE-EECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence 4568999 99999999999999998 589999999965
No 206
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.93 E-value=0.0011 Score=59.38 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=32.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|+||+.+|..+++ .+.+|+|+|++..
T Consensus 162 ~~~dVv-IIGaGPAGLaAA~~aar-~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVL-VVGAGPAGLAAALAAAR-AGARVILVDEQPE 197 (985)
T ss_pred ccCCEE-EECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence 358999 99999999999999988 6999999998754
No 207
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.89 E-value=0.0014 Score=54.69 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=30.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~ 76 (107)
.++ |||||.+|+++|++|.+. |+..|.|+|+++.-
T Consensus 2 ~i~-IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 2 KIA-IIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred eEE-EECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 356 999999999999999984 45899999998654
No 208
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.88 E-value=0.0014 Score=55.95 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=34.0
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
...+|++ |||+|.||+.+|.++++. +.+|+|||+.....
T Consensus 4 ~~~~Dvv-VIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVV-VIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEE-EECCcHHHHHHHHHHHhc-CCcEEEEEccccCC
Confidence 4568999 999999999999999984 69999999976543
No 209
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.86 E-value=0.0012 Score=55.00 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=29.9
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+|++ |||+|.||+.+|.+++ +.+|+|||++..
T Consensus 8 ~~~DVl-VIG~G~AGl~AAl~Aa---~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPV-IVGGGLAGLMAALKLA---PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEE-EECchHHHHHHHHHhC---cCCEEEEECCCC
Confidence 458999 9999999999999986 359999999875
No 210
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.85 E-value=0.0014 Score=53.82 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=24.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEE
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLL 70 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvI 70 (107)
|++ |||||.|||.+|..+++ .+.+|+|+
T Consensus 1 DVi-VVGgG~AG~eAA~aaAr-~G~~V~Li 28 (392)
T PF01134_consen 1 DVI-VVGGGHAGCEAALAAAR-MGAKVLLI 28 (392)
T ss_dssp EEE-EESSSHHHHHHHHHHHH-TT--EEEE
T ss_pred CEE-EECCCHHHHHHHHHHHH-CCCCEEEE
Confidence 788 99999999999999998 58999999
No 211
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.84 E-value=0.0024 Score=54.83 Aligned_cols=36 Identities=19% Similarity=0.024 Sum_probs=31.3
Q ss_pred ccceEEEeCccHHHHHHHHHHHHh---cCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEV---AHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~~ 75 (107)
.-+++ |||+|.||+++|.+|.++ ++.+|.|+|+...
T Consensus 22 ~~~a~-IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 22 NKKAY-IIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCeEE-EECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 45778 999999999999999985 4789999999764
No 212
>KOG0685|consensus
Probab=96.83 E-value=0.0016 Score=54.89 Aligned_cols=37 Identities=35% Similarity=0.410 Sum_probs=32.5
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||+|.||+.+|.||-+.....|+|+|+.+.-
T Consensus 21 ~~kIv-IIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 21 NAKIV-IIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred CceEE-EECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 34788 99999999999999998778899999998654
No 213
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.82 E-value=0.0017 Score=54.02 Aligned_cols=33 Identities=36% Similarity=0.553 Sum_probs=29.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+++ |||||.+|+.+|..|++ .+.+|.|+|..+.
T Consensus 2 ~Vv-VIGgGlAGleaA~~LAr-~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVH-VIGGGLAGSEAAWQLAQ-AGVPVILYEMRPE 34 (433)
T ss_pred CEE-EECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence 677 99999999999999998 5899999997654
No 214
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.82 E-value=0.0017 Score=53.19 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=28.2
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+||++ |||+|++|..+|.+. .+.+|++||++...
T Consensus 2 ~yD~v-vIG~G~~g~~aa~~~---~g~~V~lie~~~~G 35 (452)
T TIGR03452 2 HYDLI-IIGTGSGNSIPDPRF---ADKRIAIVEKGTFG 35 (452)
T ss_pred CcCEE-EECCCHHHHHHHHHH---CCCeEEEEeCCCCC
Confidence 58999 999999999886653 38999999986544
No 215
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.81 E-value=0.0019 Score=54.64 Aligned_cols=36 Identities=31% Similarity=0.214 Sum_probs=31.8
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++|++ |||+|.+|+.+|..+++ .+.+|+|||+...
T Consensus 15 ~~~dvv-vvG~G~aG~~aa~~~~~-~g~~v~l~ek~~~ 50 (578)
T PRK12843 15 AEFDVI-VIGAGAAGMSAALFAAI-AGLKVLLVERTEY 50 (578)
T ss_pred CCCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 368999 99999999999999998 5899999998653
No 216
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.80 E-value=0.0018 Score=53.60 Aligned_cols=33 Identities=39% Similarity=0.476 Sum_probs=30.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
||++ |||+|.+|+.+|.++.+ .+.+|+|||++.
T Consensus 1 ~Dv~-IIGgG~aGl~~A~~l~~-~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVI-IIGGGLAGLSCALRLAE-AGKKCAIIAAGQ 33 (419)
T ss_pred CCEE-EECchHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence 6899 99999999999999998 489999999985
No 217
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.79 E-value=0.0027 Score=52.03 Aligned_cols=37 Identities=32% Similarity=0.388 Sum_probs=32.3
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...++++ |||+|.+|+.+|..|++ .+.+|.|+|+.+.
T Consensus 131 ~~~~~V~-IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~ 167 (449)
T TIGR01316 131 STHKKVA-VIGAGPAGLACASELAK-AGHSVTVFEALHK 167 (449)
T ss_pred CCCCEEE-EECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 3457999 99999999999999998 5899999998653
No 218
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.78 E-value=0.0026 Score=52.28 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=31.8
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|.+|+.+|..|.+ .+.+|+|+|+.+.
T Consensus 142 ~~~~Vv-IIGaGpAGl~aA~~l~~-~G~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVA-VVGSGPAGLAAADQLAR-AGHKVTVFERADR 177 (471)
T ss_pred CCCEEE-EECcCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence 446899 99999999999999998 5899999998754
No 219
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.78 E-value=0.0015 Score=55.76 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=28.0
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
++ |||+|.||+.+|.++++ .+.+|+|||++.
T Consensus 1 Vl-VVG~G~AGl~AAl~Aae-~G~~VilleK~~ 31 (603)
T TIGR01811 1 VI-VVGTGLAGGMAAAKLAE-LGYHVKLFSYVD 31 (603)
T ss_pred CE-EECccHHHHHHHHHHHH-cCCCEEEEEecC
Confidence 35 99999999999999988 588999999986
No 220
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.78 E-value=0.0034 Score=52.80 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=32.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~~ 76 (107)
....++ |||+|+||+.+|..|.+ ..+.+|.|+|+.+..
T Consensus 25 ~~~~Va-IVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 25 EPLHVC-VVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCcEE-EECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 346799 99999999999999985 358999999998754
No 221
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.77 E-value=0.002 Score=58.47 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=32.0
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||||+||+.+|..|++ .+.+|+|+|+.+.
T Consensus 536 ~~kkVa-IIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVA-VIGAGPAGLSAGYFLAR-AGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEE-EECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 457999 99999999999999998 5899999998754
No 222
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.72 E-value=0.0023 Score=55.96 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=30.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
+++ |||||++|+++|..|++. ++.+|+|+|+...
T Consensus 2 ~V~-IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIV-CIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEE-EECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 577 999999999999999984 3899999999764
No 223
>KOG2614|consensus
Probab=96.70 E-value=0.0027 Score=52.69 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=32.0
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
-+++ |||||.+|++.|..|++ .+++|+|+|...+..
T Consensus 3 ~~Vv-IvGgGI~Gla~A~~l~r-~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 3 PKVV-IVGGGIVGLATALALHR-KGIDVVVLESREDPR 38 (420)
T ss_pred CcEE-EECCcHHHHHHHHHHHH-cCCeEEEEeeccccc
Confidence 4688 99999999999999998 699999999976553
No 224
>KOG2665|consensus
Probab=96.69 E-value=0.0016 Score=53.36 Aligned_cols=40 Identities=30% Similarity=0.319 Sum_probs=34.6
Q ss_pred cCCCCccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCC
Q psy4105 34 SLLVNWGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGP 74 (107)
Q Consensus 34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~ 74 (107)
+.....||.+ |||||..|++.|++|.- .|+++|+|||+..
T Consensus 43 s~s~~~~D~V-vvGgGiVGlAsARel~lrhp~l~V~vleke~ 83 (453)
T KOG2665|consen 43 SISKERYDLV-VVGGGIVGLASARELSLRHPSLKVAVLEKEK 83 (453)
T ss_pred ccccccccEE-EECCceeehhhhHHHhhcCCCceEEeeehhh
Confidence 3345689999 99999999999999985 5799999999964
No 225
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.67 E-value=0.0025 Score=52.68 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=28.6
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
++ |||+|.+|+++|.+|++ .+.+|.|+|+...
T Consensus 2 v~-IiG~G~aGl~aA~~L~~-~G~~v~v~E~~~~ 33 (474)
T TIGR02732 2 VA-IVGAGLAGLSTAVELVD-AGHEVDIYESRSF 33 (474)
T ss_pred EE-EECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence 56 99999999999999998 5899999999654
No 226
>KOG2960|consensus
Probab=96.61 E-value=0.00042 Score=54.23 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=32.2
Q ss_pred ccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~~ 76 (107)
..|++ |||+|++|+.+|+.+++ +|+++|.+||+.-.+
T Consensus 76 esDvv-iVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVV-IVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceE-EECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 35999 99999999999999984 689999999996544
No 227
>KOG0405|consensus
Probab=96.60 E-value=0.003 Score=52.26 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=33.6
Q ss_pred cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
+.....|||+ +||+|+.|...|+|.++ .+.+|.|+|..
T Consensus 15 a~~~k~fDyl-vIGgGSGGvasARrAa~-~GAkv~l~E~~ 52 (478)
T KOG0405|consen 15 AADVKDFDYL-VIGGGSGGVASARRAAS-HGAKVALCELP 52 (478)
T ss_pred cccccccceE-EEcCCcchhHHhHHHHh-cCceEEEEecC
Confidence 3445589999 99999999999999887 59999999998
No 228
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.60 E-value=0.0041 Score=50.75 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=31.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|++|+.+|..|.+ .+.+|.|+|+.+.
T Consensus 139 ~~~~Vv-IIGgGpaGl~aA~~l~~-~g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVA-VIGAGPAGLTAAHRLAR-KGYDVTIFEARDK 174 (457)
T ss_pred CCCcEE-EECCCHHHHHHHHHHHh-CCCeEEEEccCCC
Confidence 346899 99999999999999998 5899999998754
No 229
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.55 E-value=0.0022 Score=51.84 Aligned_cols=30 Identities=50% Similarity=0.625 Sum_probs=27.2
Q ss_pred EeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|||+|.+|+++|.++++ .+.+|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~-~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR-AGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence 69999999999999998 4899999999764
No 230
>PLN02612 phytoene desaturase
Probab=96.53 E-value=0.0044 Score=52.43 Aligned_cols=34 Identities=32% Similarity=0.265 Sum_probs=30.7
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..+++ |||+|.+|+++|.+|.+ .+.+|+|+|+..
T Consensus 93 ~~~v~-iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~ 126 (567)
T PLN02612 93 PLKVV-IAGAGLAGLSTAKYLAD-AGHKPILLEARD 126 (567)
T ss_pred CCCEE-EECCCHHHHHHHHHHHh-cCCeEEEEecCC
Confidence 46889 99999999999999998 589999999964
No 231
>KOG3855|consensus
Probab=96.53 E-value=0.0037 Score=52.37 Aligned_cols=39 Identities=33% Similarity=0.414 Sum_probs=33.6
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhc---CCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVA---HWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~---~~~VlvIEag~~ 75 (107)
....||++ |||||+.|..+|..|..++ .+||+++|++..
T Consensus 33 ~~~~~dVv-IvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 33 DTAKYDVV-IVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred CcccCCEE-EECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 34579999 9999999999999998754 679999999954
No 232
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.0033 Score=53.06 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=30.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.++ |+|+|.||+++|..|++ .+..|.|.|+++..
T Consensus 2 rVa-i~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~ 35 (485)
T COG3349 2 RVA-IAGAGLAGLAAAYELAD-AGYDVTLYEARDRL 35 (485)
T ss_pred eEE-EEcccHHHHHHHHHHHh-CCCceEEEeccCcc
Confidence 356 99999999999999998 58999999998754
No 233
>KOG1399|consensus
Probab=96.51 E-value=0.0032 Score=52.52 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=32.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.-+++ |||+|+||+++|+.|.+ .+..|.++|+...-
T Consensus 6 ~~~va-IIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVA-VIGAGPAGLAAARELLR-EGHEVVVFERTDDI 41 (448)
T ss_pred CCceE-EECcchHHHHHHHHHHH-CCCCceEEEecCCc
Confidence 35788 99999999999999998 59999999998754
No 234
>KOG2820|consensus
Probab=96.50 E-value=0.0036 Score=51.32 Aligned_cols=38 Identities=32% Similarity=0.282 Sum_probs=33.1
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
....|++ |||+|..|+.+|.+|+++ +.++++||+-+..
T Consensus 5 ~~~~~vi-iVGAGVfG~stAyeLaK~-g~killLeqf~~p 42 (399)
T KOG2820|consen 5 VKSRDVI-IVGAGVFGLSTAYELAKR-GDKILLLEQFPLP 42 (399)
T ss_pred ccceeEE-EEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence 3457999 999999999999999995 7999999996643
No 235
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.49 E-value=0.0041 Score=50.99 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|++ |||+|++|..+|.++++ .+.+|+|||++..
T Consensus 3 ~vv-viG~G~~G~~~a~~~~~-~g~~v~~~e~~~~ 35 (466)
T PRK07845 3 RIV-IIGGGPGGYEAALVAAQ-LGADVTVIERDGL 35 (466)
T ss_pred cEE-EECCCHHHHHHHHHHHh-CCCeEEEEEccCC
Confidence 688 99999999999999998 5899999998753
No 236
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.48 E-value=0.0041 Score=53.28 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=31.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|+||+.+|..|.+ .+.+|+|+|+.+.
T Consensus 326 ~~~~Va-IIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVA-IIGAGPAGLACADVLAR-NGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 346899 99999999999999998 5899999998754
No 237
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.47 E-value=0.0047 Score=54.91 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=32.3
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
....+++ |||+|.+|+.+|..|.+ .+.+|+|+|+...
T Consensus 236 ~~~~~v~-IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r 272 (808)
T PLN02328 236 VEPANVV-VVGAGLAGLVAARQLLS-MGFKVVVLEGRAR 272 (808)
T ss_pred CCCCCEE-EECcCHHHHHHHHHHHH-CCCcEEEEecccc
Confidence 3457899 99999999999999988 5899999999653
No 238
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.46 E-value=0.0041 Score=53.86 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=29.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
||++ |||+|.+|+.+|..+++ .+.+|+|||...
T Consensus 1 yDVi-VIGaG~AGl~aA~ala~-~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVI-VIGGGHAGCEAALAAAR-MGAKTLLLTLNL 33 (617)
T ss_pred CeEE-EECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence 6999 99999999999999998 588999999864
No 239
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.46 E-value=0.0086 Score=37.60 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=29.9
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
++ |||+|..|+-+|..|++ .+.+|.+|+.++...
T Consensus 2 vv-ViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VV-VIGGGFIGIELAEALAE-LGKEVTLIERSDRLL 35 (80)
T ss_dssp EE-EESSSHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred EE-EECcCHHHHHHHHHHHH-hCcEEEEEeccchhh
Confidence 45 99999999999999998 589999999987644
No 240
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.45 E-value=0.0051 Score=53.49 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=31.1
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
...+++ |||+|+||+.+|..|++ .+.+|+|+|+.+
T Consensus 430 ~~~~V~-IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVA-VIGSGPAGLSFAGDLAK-RGYDVTVFEALH 464 (752)
T ss_pred CCCEEE-EECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 456899 99999999999999998 589999999854
No 241
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.35 E-value=0.006 Score=55.14 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=32.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...+++ |||+|+||+++|..|++ .+.+|+|+|+.+..
T Consensus 429 ~~~kVa-IIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVA-ICGSGPAGLAAAADLVK-YGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence 346899 99999999999999998 48999999997643
No 242
>PLN02529 lysine-specific histone demethylase 1
Probab=96.34 E-value=0.0057 Score=53.88 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=31.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|.+|+.+|..|.+ .+.+|+|+|+...
T Consensus 159 ~~~~v~-viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~ 194 (738)
T PLN02529 159 TEGSVI-IVGAGLAGLAAARQLLS-FGFKVVVLEGRNR 194 (738)
T ss_pred CCCCEE-EECcCHHHHHHHHHHHH-cCCcEEEEecCcc
Confidence 457899 99999999999999998 5899999999653
No 243
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.33 E-value=0.005 Score=55.37 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.4
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+++ |||+|+||+++|..|.+ .+.+|.|+|+.+.
T Consensus 306 gkkVa-VIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~ 340 (944)
T PRK12779 306 KPPIA-VVGSGPSGLINAYLLAV-EGFPVTVFEAFHD 340 (944)
T ss_pred CCeEE-EECCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Confidence 46889 99999999999999998 5899999998754
No 244
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.33 E-value=0.006 Score=49.08 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=29.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
.++ |||+|.+|+.+|..|.+. ++.+|.|||+.+.
T Consensus 2 ~vv-IIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KII-IIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEE-EECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 467 999999999999999874 3579999999864
No 245
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.32 E-value=0.0063 Score=49.50 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=29.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
.++ |||||.+|..+|.+|.+. ++.+|+|||+.+.
T Consensus 3 ~VV-IIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KII-VVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEE-EECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 577 999999999999999873 4789999999864
No 246
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.26 E-value=0.006 Score=55.48 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|+||+.+|..|++ .+.+|.|+|+.+.
T Consensus 538 tgKkVa-IIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVA-VIGAGPAGLAAAYFLAR-AGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEE-EECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 346899 99999999999999998 5899999998754
No 247
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.21 E-value=0.0083 Score=51.58 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=31.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|++|+.+|..|++ .+.+|.|+|+...
T Consensus 192 ~~k~Va-IIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVA-IIGAGPAGLTAAYYLLR-KGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEE-EECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 346899 99999999999999998 5899999998754
No 248
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.19 E-value=0.0089 Score=47.77 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=29.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~ 75 (107)
.+++ |||+|.||+.+|..|.+. ...+|.||++...
T Consensus 4 ~~vv-IIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 4 KTII-IVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred CcEE-EECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 4688 999999999999999874 3458999998753
No 249
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.16 E-value=0.0088 Score=47.07 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=31.4
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..+++ |||+|.+|+.+|..|.+ .+.+|.++|+.+..
T Consensus 18 ~~~Vv-IIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVA-IIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEE-EECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence 35888 99999999999999997 58999999997653
No 250
>KOG4716|consensus
Probab=96.16 E-value=0.0061 Score=50.50 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=32.9
Q ss_pred cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
......||.| |||||++|+++|.+.+. -+.+|+++|.-
T Consensus 14 ~~~sydyDLI-viGgGSgGLacaKeAa~-~G~kV~~lDfV 51 (503)
T KOG4716|consen 14 LFSSYDYDLI-VIGGGSGGLACAKEAAD-LGAKVACLDFV 51 (503)
T ss_pred hcccCCccEE-EEcCCcchhhHHHHHHh-cCCcEEEEeec
Confidence 4455679999 99999999999999887 58999999873
No 251
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.09 E-value=0.0073 Score=48.26 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=27.5
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.||+| .||.|++++++|..|.+.+..+++.+|+.+.-
T Consensus 2 ~~D~i-gIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLI-GIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEE-EE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEE-EEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 58999 99999999999999999778999999987643
No 252
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.04 E-value=0.016 Score=47.87 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=31.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|++|+.+|..|++ .+.+|.++|+.+.
T Consensus 140 ~~~~V~-IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVA-VIGAGPAGLACADILAR-AGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 446899 99999999999999998 5889999998754
No 253
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.03 E-value=0.01 Score=48.07 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=31.4
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..+.+++ |||||.||+.+|.+|.. .+.+|.|||..+..
T Consensus 8 ~~~~~vV-IvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVV-VLGTGWAGAYFVRNLDP-KKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEE-EECCCHHHHHHHHHhCc-CCCeEEEEcCCCCc
Confidence 3446899 99999999999999964 46899999987654
No 254
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.02 E-value=0.01 Score=48.83 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=31.1
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+||++ |||||.||+..+.+|.+ .+.++.||-.|..
T Consensus 2 ~fDv~-IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVA-IIGGGLAGLTCGLALQQ-AGKRCAIVNRGQS 36 (421)
T ss_pred cccEE-EEcCcHHHHHHHHHHHh-cCCcEEEEeCChh
Confidence 58999 99999999999999998 5888888888754
No 255
>PLN02487 zeta-carotene desaturase
Probab=96.02 E-value=0.01 Score=50.67 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=31.4
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..+++ |||+|.+|+++|.+|.+ .+.+|.|+|+.+..
T Consensus 75 ~~~v~-iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~ 110 (569)
T PLN02487 75 KLKVA-IIGAGLAGMSTAVELLD-QGHEVDIYESRPFI 110 (569)
T ss_pred CCeEE-EECCCHHHHHHHHHHHh-CCCeeEEEecCCCC
Confidence 45888 99999999999999998 48999999996543
No 256
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.99 E-value=0.014 Score=49.98 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|++|+.+|..|++ .+.+|.|+|+.+.
T Consensus 309 ~~kkVa-IIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVA-VIGAGPAGLGCADILAR-AGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEE-EECcCHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence 356788 99999999999999998 5889999999864
No 257
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.92 E-value=0.017 Score=47.96 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=31.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+++ |||+|.+|+.+|..|.+ .+.+|.|+|+.+.
T Consensus 143 ~~~V~-IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVA-VVGSGPAGLAAADQLNR-AGHTVTVFEREDR 177 (485)
T ss_pred CCEEE-EECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 36889 99999999999999998 5899999998764
No 258
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.91 E-value=0.012 Score=49.74 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.++ |||||.+|+++|..|.+ .++.|.++|+.++-
T Consensus 3 rVa-VIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVA-VIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDI 36 (531)
T ss_dssp EEE-EE--SHHHHHHHHHHHH-TT-EEEEEESSSSS
T ss_pred EEE-EECccHHHHHHHHHHHH-CCCCCeEEecCCCC
Confidence 366 99999999999999998 58999999998764
No 259
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.86 E-value=0.019 Score=48.82 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=31.6
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||+|+||+.+|.+|....+.+|.|+|+.+..
T Consensus 39 ~krVA-IVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVG-IIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEE-EECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 35688 99999999999998875568999999998765
No 260
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.84 E-value=0.015 Score=48.54 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=29.6
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
...||+| |+|.|..-+.+|..|+. .+.+||.||+.+...
T Consensus 2 ~~~yDvi-I~GTGl~esila~als~-~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVI-ILGTGLTESILAAALSR-SGKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEE-EE--SHHHHHHHHHHHH-TT--EEEE-SSSSSC
T ss_pred CccceEE-EECCCcHHHHHHHHHHh-cCCEEEecCCCCCcC
Confidence 4579999 99999999999999998 599999999987653
No 261
>PLN03000 amine oxidase
Probab=95.78 E-value=0.014 Score=52.35 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=32.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...+++ |||+|.+|+.+|..|.+ .+.+|+|+|+....
T Consensus 183 ~~~~Vv-IIGaG~aGL~aA~~L~~-~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVV-IVGAGLSGLAAARQLMR-FGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEE-EECccHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence 357899 99999999999999998 58899999997654
No 262
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=95.75 E-value=0.015 Score=49.20 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=33.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~ 75 (107)
..+|++ +||||..|++++..|++ .|.++|.|+|+-+.
T Consensus 2 ~~~DVv-LIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~ 39 (488)
T PF06039_consen 2 KEYDVV-LIGGGIMSATLGYLLKELEPDWSIAIFERLDS 39 (488)
T ss_pred CceeEE-EECchHHHHHHHHHHHHhCCCCeEEEEEecCc
Confidence 468999 99999999999999998 68999999999654
No 263
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.72 E-value=0.015 Score=45.43 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=28.4
Q ss_pred eEEEeCccHHHHHHHHHHHH--hcCCeEEEEcCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSE--VAHWSVLLLEAGPDE 76 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~--~~~~~VlvIEag~~~ 76 (107)
++ |||||.||..+|.+|.+ .++.+|+|||+....
T Consensus 2 vv-IiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 2 LV-LIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred EE-EECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 56 99999999999999964 357899999987653
No 264
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.69 E-value=0.014 Score=53.10 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=30.6
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
....++ |||+|+||+.+|..|++ .+.+|.++|+.
T Consensus 382 tgKKVa-VVGaGPAGLsAA~~La~-~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNIL-VTGLGPAGFSLSYYLLR-SGHNVTAIDGL 415 (1028)
T ss_pred CCCeEE-EECcCHHHHHHHHHHHh-CCCeEEEEccc
Confidence 346788 99999999999999998 59999999985
No 265
>PRK09897 hypothetical protein; Provisional
Probab=95.67 E-value=0.017 Score=49.12 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~ 74 (107)
.+++ |||+|++|+.+|.+|.+. ...+|.|+|.+.
T Consensus 2 ~~IA-IIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIA-IVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEE-EECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 4678 999999999999999873 357999999954
No 266
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.66 E-value=0.018 Score=45.55 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=29.4
Q ss_pred cceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~ 75 (107)
.+++ |||+|.||..+|.+|.+ .++.+|.||++...
T Consensus 3 ~~vv-IiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIV-IIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEE-EECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 4788 99999999999999987 45778999987653
No 267
>KOG2853|consensus
Probab=95.65 E-value=0.012 Score=48.76 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=33.3
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHh---cCCeEEEEcCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEV---AHWSVLLLEAGPD 75 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~~ 75 (107)
...++|++ |||||..|+++|.-|.+. .+++|+|+|....
T Consensus 83 f~~~~dVv-IIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 83 FPYHCDVV-IIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccccCEE-EECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 34578999 999999999999999873 4699999999764
No 268
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.63 E-value=0.018 Score=49.37 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=30.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+ |||||.||..+|..|++ .+.+|.++|+.+.
T Consensus 126 svL-VIGGGvAGitAAl~La~-~G~~v~LVEKeps 158 (622)
T COG1148 126 SVL-VIGGGVAGITAALELAD-MGFKVYLVEKEPS 158 (622)
T ss_pred ceE-EEcCcHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence 577 99999999999999998 5999999999764
No 269
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.53 E-value=0.021 Score=47.99 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=30.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.-+++ |||+|++|+.+|..|.+ .+.+|.|+|+.+.
T Consensus 137 g~~V~-VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~~ 171 (564)
T PRK12771 137 GKRVA-VIGGGPAGLSAAYHLRR-MGHAVTIFEAGPK 171 (564)
T ss_pred CCEEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 34788 99999999999999988 4789999998653
No 270
>KOG1276|consensus
Probab=95.52 E-value=0.023 Score=47.90 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=33.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCCCCc
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDENEV 79 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~~~~ 79 (107)
..+++ |+|||.+|+++|+.|+.. ++.+|.|.|+++.-..|
T Consensus 11 ~~~va-VvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 11 GMTVA-VVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred cceEE-EECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 35788 999999999999999984 56778999998765444
No 271
>PRK13984 putative oxidoreductase; Provisional
Probab=95.47 E-value=0.029 Score=47.46 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=31.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...+++ |||+|.+|+.+|..|.+ .+.+|.|+|+.+.
T Consensus 282 ~~~~v~-IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVA-IVGSGPAGLSAAYFLAT-MGYEVTVYESLSK 317 (604)
T ss_pred CCCeEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 345788 99999999999999998 5899999998764
No 272
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.43 E-value=0.028 Score=39.68 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=27.3
Q ss_pred EeCccHHHHHHHHHHHHh----cCCeEEEEcCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEV----AHWSVLLLEAGPD 75 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~----~~~~VlvIEag~~ 75 (107)
|||+|++|+.++.+|.+. ...+|.|+|+.+.
T Consensus 2 IIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 2 IIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred EECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 899999999999999986 3689999999554
No 273
>KOG0042|consensus
Probab=95.41 E-value=0.0075 Score=52.13 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=32.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
..||++ |||||..|.-+|.-.+. .+++|.++|+++..+
T Consensus 66 ~~fDVL-IIGGGAtGaGcALDA~T-RGLktaLVE~~DF~S 103 (680)
T KOG0042|consen 66 HEFDVL-IIGGGATGAGCALDAAT-RGLKTALVEAGDFAS 103 (680)
T ss_pred CcccEE-EECCCccCcceeehhhc-ccceeEEEecccccC
Confidence 459999 99999998888877665 699999999998764
No 274
>PLN02976 amine oxidase
Probab=95.24 E-value=0.027 Score=53.36 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=31.1
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++++ |||+|.+|+.+|.+|.+ .+.+|+|+|+...
T Consensus 693 ~~dV~-IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~ 727 (1713)
T PLN02976 693 RKKII-VVGAGPAGLTAARHLQR-QGFSVTVLEARSR 727 (1713)
T ss_pred CCcEE-EECchHHHHHHHHHHHH-CCCcEEEEeeccC
Confidence 47899 99999999999999998 5889999998643
No 275
>KOG3851|consensus
Probab=94.94 E-value=0.026 Score=46.51 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=33.9
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE 76 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~ 76 (107)
...+|.++ |||||++|+.+|+++... +.-+|.|||..++.
T Consensus 36 ~~~h~kvL-VvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 36 ARKHFKVL-VVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred cccceEEE-EEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 34679999 999999999999999873 56789999997754
No 276
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.87 E-value=0.026 Score=48.78 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=29.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..||+| |||||.||+-+|...++ -+.+++++=-..
T Consensus 3 ~~~DVI-VIGgGHAG~EAA~AaAR-mG~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVI-VIGGGHAGVEAALAAAR-MGAKTLLLTLNL 37 (621)
T ss_pred CCCceE-EECCCccchHHHHhhhc-cCCeEEEEEcCC
Confidence 349999 99999999999999887 488888876544
No 277
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=94.51 E-value=0.04 Score=46.92 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=29.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
|++ |||+|.||+.+|..|.+ ..+|+||-++...
T Consensus 9 dV~-IiGsG~AGL~~AL~L~~--~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVL-IIGSGLAGLTAALSLAP--SFRVTVLTKGPLG 41 (518)
T ss_pred cEE-EECCcHHHHHHHHhCCC--CCcEEEEeCCCCC
Confidence 889 99999999999999997 4999999998765
No 278
>KOG1335|consensus
Probab=94.13 E-value=0.061 Score=45.17 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=32.2
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..||++ |||+|+.|.++|.+.++ .+++...||....
T Consensus 38 ~d~Dvv-vIG~GpGGyvAAikAaQ-lGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVV-VIGGGPGGYVAAIKAAQ-LGLKTACVEKRGT 73 (506)
T ss_pred ccCCEE-EECCCCchHHHHHHHHH-hcceeEEEeccCc
Confidence 569999 99999999999999998 5999999999543
No 279
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.95 E-value=0.086 Score=39.80 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=28.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |+|+|..|..+|..|++ .+..|++||..+.
T Consensus 2 ~ii-IiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KII-IIGAGRVGRSVARELSE-EGHNVVLIDRDEE 34 (225)
T ss_pred EEE-EECCcHHHHHHHHHHHh-CCCceEEEEcCHH
Confidence 467 99999999999999998 4889999998654
No 280
>KOG2755|consensus
Probab=93.54 E-value=0.056 Score=43.36 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=29.2
Q ss_pred ceEEEeCccHHHHHHHHHHHH-hcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSE-VAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~ 75 (107)
.|+ |||||.||.+.|..|++ .|...|++|-+.+.
T Consensus 1 kfi-vvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFI-VVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeE-EEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 378 99999999999999997 47789999988653
No 281
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.40 E-value=0.19 Score=34.52 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=26.7
Q ss_pred EeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
|+|+|..|+..|.+|++ .+.+|.++-.+.
T Consensus 3 I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~ 31 (151)
T PF02558_consen 3 IIGAGAIGSLYAARLAQ-AGHDVTLVSRSP 31 (151)
T ss_dssp EESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred EECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence 99999999999999998 689999998876
No 282
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.37 E-value=0.15 Score=42.21 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=31.3
Q ss_pred cceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGPDEN 77 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~~~~ 77 (107)
..++ |||||.+|+.+|.+|.+.+ +.+|.+||......
T Consensus 4 ~~iV-IlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 4 KRIV-ILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred ceEE-EECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 4577 9999999999999999853 58899999987653
No 283
>KOG2311|consensus
Probab=93.24 E-value=0.087 Score=45.41 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=27.4
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
....||+| |||||.|||-+|...+.. +.+.+++-.
T Consensus 25 ~~~~~dVv-VIGgGHAG~EAAaAaaR~-Ga~TlLlT~ 59 (679)
T KOG2311|consen 25 STSTYDVV-VIGGGHAGCEAAAAAARL-GARTLLLTH 59 (679)
T ss_pred CCCcccEE-EECCCccchHHHHHHHhc-CCceEEeec
Confidence 45679999 999999999999988874 555555543
No 284
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=93.08 E-value=0.092 Score=43.62 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=30.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+.++. |||+|.+|+++|.-|+. ..+|.+.|++..
T Consensus 8 r~~IA-VIGsGisGLSAA~~Ls~--rhdVTLfEA~~r 41 (447)
T COG2907 8 RRKIA-VIGSGISGLSAAWLLSR--RHDVTLFEADRR 41 (447)
T ss_pred CcceE-EEcccchhhhhHHhhhc--ccceEEEecccc
Confidence 45788 99999999999999996 689999999764
No 285
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=93.05 E-value=0.17 Score=39.03 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=31.1
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
-+.+ |+|+|..|+.+|..+.+ .+.+|.++|..+..
T Consensus 137 ~~v~-vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVV-VVGAGPIGLEAAEAAAK-RGKKVTLIEAADRL 171 (415)
T ss_pred CeEE-EECCcHHHHHHHHHHHH-cCCeEEEEEccccc
Confidence 4677 99999999999999998 58999999998754
No 286
>KOG4254|consensus
Probab=93.02 E-value=0.098 Score=44.62 Aligned_cols=37 Identities=30% Similarity=0.231 Sum_probs=33.0
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
...||.+ |||+|.-|+.+|..|++ .+.+|+++|....
T Consensus 12 ~~~ydav-vig~GhnGL~aaayl~r-~g~~V~vlerrhv 48 (561)
T KOG4254|consen 12 KPEYDAV-VIGGGHNGLTAAAYLAR-YGQSVAVLERRHV 48 (561)
T ss_pred CcccceE-EecCCccchhHHHHHHh-cCcceEEEEEeee
Confidence 4579999 99999999999999998 6899999999743
No 287
>KOG1800|consensus
Probab=92.79 E-value=0.19 Score=42.07 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=32.9
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHh-cCCeEEEEcCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEV-AHWSVLLLEAGPDE 76 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~-~~~~VlvIEag~~~ 76 (107)
..+..+. |||+|+||+-+|..|-+. ++..|-|+|+.+.+
T Consensus 18 s~~p~vc-IVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 18 SSTPRVC-IVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred cCCceEE-EECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 3445777 999999999999999884 67999999998765
No 288
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.55 E-value=0.24 Score=44.26 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=29.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHh---cCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEV---AHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~~~ 76 (107)
.++ |||+|.||..+|.+|.+. .+.+|.||++.+..
T Consensus 5 kIV-IVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLA-IIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEE-EECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 688 999999999999999763 35899999988654
No 289
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.44 E-value=0.34 Score=31.71 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=26.9
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
++ |+|.|..|..++..|.+ .+.+|.+||..+
T Consensus 1 vv-I~G~g~~~~~i~~~L~~-~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VV-IIGYGRIGREIAEQLKE-GGIDVVVIDRDP 31 (116)
T ss_dssp EE-EES-SHHHHHHHHHHHH-TTSEEEEEESSH
T ss_pred eE-EEcCCHHHHHHHHHHHh-CCCEEEEEECCc
Confidence 46 99999999999999998 577999999875
No 290
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=92.39 E-value=0.14 Score=43.57 Aligned_cols=31 Identities=23% Similarity=0.116 Sum_probs=27.1
Q ss_pred EeCccHHHHHHHHHHHHh---cCCeEEEEcCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEV---AHWSVLLLEAGPD 75 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~~ 75 (107)
|||+|.|++++|..|.++ ++.+|.|+|+-..
T Consensus 7 ivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 7 IVGSGIASLAAAVFLIRDAKMPGENIHILEELDV 40 (500)
T ss_pred EECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence 899999999999999875 5779999998553
No 291
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.30 E-value=0.2 Score=44.12 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=27.9
Q ss_pred EEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy4105 43 PVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPDE 76 (107)
Q Consensus 43 i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~~ 76 (107)
+ |||+|.||..+|.+|.+. .+.+|.|||+.+..
T Consensus 2 V-IIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 2 V-LVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred E-EECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 5 999999999999998763 36799999988653
No 292
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=92.18 E-value=0.21 Score=41.29 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=33.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC-Ccccchhh
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN-EVTDVPSL 85 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~-~~~~iP~~ 85 (107)
-+. |||+|.||+-+|.++++ .+.+|.+.|-.+... +....-.+
T Consensus 5 ~i~-VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~k~TpaH~td~f 48 (439)
T COG1206 5 PIN-VIGAGLAGSEAAWQIAK-RGVPVILYEMRPVKGTPAHKTDNF 48 (439)
T ss_pred ceE-EEcccccccHHHHHHHH-cCCcEEEEEcccccCCCcccccch
Confidence 355 89999999999999999 699999999987542 43333333
No 293
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=91.97 E-value=0.28 Score=41.05 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=30.5
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
-.+. |||+|+||+.+|..|+. .+..|.+.|+-+..
T Consensus 124 ~~Va-viGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~ 158 (457)
T COG0493 124 KKVA-VIGAGPAGLAAADDLSR-AGHDVTVFERVALD 158 (457)
T ss_pred CEEE-EECCCchHhhhHHHHHh-CCCeEEEeCCcCCC
Confidence 4566 99999999999999998 59999999997654
No 294
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.93 E-value=0.25 Score=41.79 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=29.6
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhc--CCeEEEEcCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVA--HWSVLLLEAGPD 75 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~--~~~VlvIEag~~ 75 (107)
+++++ |||+|..|.++|.+|.+.+ ...|.|+|..+.
T Consensus 1 ~~~VA-IIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 1 MFKVA-IIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred CceEE-EECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 36889 9999999999999998853 334999999654
No 295
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.88 E-value=0.35 Score=34.16 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.8
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |+|+|..|.++|..|++ .+.+|.+.....
T Consensus 2 I~-ViGaG~~G~AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IA-VIGAGNWGTALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EE-EESSSHHHHHHHHHHHH-CTEEEEEETSCH
T ss_pred EE-EECcCHHHHHHHHHHHH-cCCEEEEEeccH
Confidence 45 99999999999999998 478999988764
No 296
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.62 E-value=0.3 Score=40.92 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=35.2
Q ss_pred CCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 37 VNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 37 ~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
+..+|+| .||-|++-+.+|..|.+..+.+++.+|..+.-.
T Consensus 3 ~~~~Dli-GIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~ 42 (436)
T COG3486 3 AEVLDLI-GIGIGPFNLSLAALLEEHSGLKSLFLERKPDFS 42 (436)
T ss_pred CcceeeE-EEccCchHHHHHHHhccccCcceEEEecCCCCC
Confidence 4568999 999999999999999997778999999987643
No 297
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.58 E-value=0.35 Score=38.67 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=29.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.|||.++.
T Consensus 146 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~ 178 (396)
T PRK09754 146 SVV-IVGAGTIGLELAASATQ-RRCKVTVIELAAT 178 (396)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence 467 99999999999999987 5889999998764
No 298
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.44 E-value=0.22 Score=42.15 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=35.9
Q ss_pred cCCCCccceEEEeCccHHHHHHHHHHHHh----cCCeEEEEcCCCCC
Q psy4105 34 SLLVNWGDFPVSLGGGSAGAVVASRLSEV----AHWSVLLLEAGPDE 76 (107)
Q Consensus 34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~----~~~~VlvIEag~~~ 76 (107)
......+|.+ +||+|++|+-+|++++.+ +..+|++||.|.+.
T Consensus 13 ~~~~~~~~vv-ivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~ 58 (486)
T COG2509 13 ALMNAALDVV-IVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI 58 (486)
T ss_pred HHhhhccceE-EECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence 3455679999 999999999999999974 47899999999765
No 299
>KOG2404|consensus
Probab=91.40 E-value=0.24 Score=41.05 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=27.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
-++ |||+|.||++++.++... +-.|+++|+...
T Consensus 11 pvv-VIGgGLAGLsasn~iin~-gg~V~llek~~s 43 (477)
T KOG2404|consen 11 PVV-VIGGGLAGLSASNDIINK-GGIVILLEKAGS 43 (477)
T ss_pred cEE-EECCchhhhhhHHHHHhc-CCeEEEEeccCC
Confidence 467 999999999999999974 555999998543
No 300
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.34 E-value=0.46 Score=37.01 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=28.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..+. |||+|..|+.+|.+|++ .+..|.++..+.
T Consensus 6 m~I~-IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIG-IIGTGAIGGFYGAMLAR-AGFDVHFLLRSD 38 (313)
T ss_pred cEEE-EECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence 4577 99999999999999998 478998887765
No 301
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.07 E-value=0.41 Score=38.72 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=29.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus 159 ~vv-IIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLG-IIGGGNIGLEFAGLYNK-LGSKVTVLDAAST 191 (438)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCc
Confidence 467 99999999999999987 5889999999764
No 302
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=90.97 E-value=0.39 Score=39.31 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=29.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|.+|+-+|..|++ .+.+|.+||.++.
T Consensus 182 ~vv-IIGgG~~G~E~A~~l~~-~g~~Vtli~~~~~ 214 (472)
T PRK05976 182 SLV-IVGGGVIGLEWASMLAD-FGVEVTVVEAADR 214 (472)
T ss_pred EEE-EECCCHHHHHHHHHHHH-cCCeEEEEEecCc
Confidence 567 99999999999999998 5889999998764
No 303
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=90.60 E-value=0.49 Score=37.42 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=29.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus 143 ~vv-ViGgG~~g~e~A~~L~~-~g~~Vtlv~~~~~ 175 (377)
T PRK04965 143 RVL-VVGGGLIGTELAMDLCR-AGKAVTLVDNAAS 175 (377)
T ss_pred eEE-EECCCHHHHHHHHHHHh-cCCeEEEEecCCc
Confidence 467 99999999999999987 4889999998764
No 304
>KOG4405|consensus
Probab=90.56 E-value=0.35 Score=41.03 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=34.5
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
....||+| |||.|..-+++|+.-++ .|.+||.||..++..
T Consensus 5 lP~~fDvV-ViGTGlpESilAAAcSr-sG~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 5 LPEEFDVV-VIGTGLPESILAAACSR-SGSSVLHLDSNEYYG 44 (547)
T ss_pred CchhccEE-EEcCCCcHHHHHHHhhh-cCCceEeccCccccC
Confidence 34569999 99999999999998887 599999999987653
No 305
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=90.44 E-value=0.62 Score=33.87 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=25.3
Q ss_pred EeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|||+|..|..+|..++. .+.+|.++|..+.
T Consensus 4 ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 4 VIGAGTMGRGIAALFAR-AGYEVTLYDRSPE 33 (180)
T ss_dssp EES-SHHHHHHHHHHHH-TTSEEEEE-SSHH
T ss_pred EEcCCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence 99999999999999998 5999999998654
No 306
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=90.17 E-value=0.5 Score=38.22 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus 172 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 204 (461)
T TIGR01350 172 SLV-IIGGGVIGIEFASIFAS-LGSKVTVIEMLDR 204 (461)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCcEEEEEcCCC
Confidence 577 99999999999999988 4889999998764
No 307
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=89.84 E-value=0.45 Score=36.10 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 50 SAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 50 ~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.||+++|.+|++ .+.+|+|+|+.+..
T Consensus 1 iaGL~aA~~L~~-~G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 1 IAGLAAAYYLAK-AGYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHH-TTTEEEEEESSSSS
T ss_pred ChHHHHHHHHHh-CCCCEEEEEcCCCC
Confidence 489999999998 48899999998654
No 308
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.82 E-value=0.59 Score=36.48 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=28.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..+. |+|+|..|..+|.+|++ .+..|.++.++.
T Consensus 3 m~I~-IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWH-ILGAGSLGSLWACRLAR-AGLPVRLILRDR 35 (305)
T ss_pred ceEE-EECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence 3577 99999999999999998 478899998864
No 309
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=89.76 E-value=0.61 Score=38.09 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=28.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..+.+ .+.+|.++|.++.
T Consensus 172 ~vv-IIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~ 204 (458)
T PRK06912 172 SLL-IVGGGVIGCEFASIYSR-LGTKVTIVEMAPQ 204 (458)
T ss_pred cEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 577 99999999999999987 5789999998764
No 310
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.51 E-value=0.61 Score=38.38 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=29.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus 176 ~vv-IiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLL-VMGGGIIGLEMGTVYHR-LGSEVDVVEMFDQ 208 (471)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCCEEEEecCCC
Confidence 567 99999999999999987 5889999998864
No 311
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.42 E-value=0.68 Score=37.93 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|+|.+|+.+|..|.+ .+.+|.++|..+
T Consensus 18 ~v~-viG~G~~G~~~A~~L~~-~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVV-VAGLGVSGFAAADALLE-LGARVTVVDDGD 49 (480)
T ss_pred EEE-EECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 567 99999999999998887 588999999764
No 312
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=89.22 E-value=0.71 Score=37.06 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=28.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+|+.+..
T Consensus 139 ~vv-ViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 171 (427)
T TIGR03385 139 NVV-IIGGGYIGIEMAEALRE-RGKNVTLIHRSER 171 (427)
T ss_pred eEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCcc
Confidence 567 99999999999999987 5788999998764
No 313
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=89.08 E-value=0.69 Score=37.66 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus 168 ~vv-IIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~ 200 (463)
T TIGR02053 168 SLA-VIGGGAIGVELAQAFAR-LGSEVTILQRSDR 200 (463)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCcEEEEEcCCc
Confidence 567 99999999999999987 4789999998854
No 314
>PRK07846 mycothione reductase; Reviewed
Probab=89.06 E-value=0.73 Score=37.77 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=29.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus 168 ~vv-IIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~ 200 (451)
T PRK07846 168 SLV-IVGGGFIAAEFAHVFSA-LGVRVTVVNRSGR 200 (451)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCc
Confidence 577 99999999999999987 5889999998764
No 315
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.68 E-value=0.84 Score=37.07 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=29.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.++ |||+|..|+-+|..|++ .+.+|.+||.++..
T Consensus 174 ~vv-VvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLV-VIGGGYIGVEFASAYAS-LGAEVTIVEALPRI 207 (462)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCCc
Confidence 467 99999999999999987 58899999987643
No 316
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.65 E-value=0.82 Score=34.67 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=26.3
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
+. |+|+|..|..+|..|++ .+..|.++...
T Consensus 3 I~-IiG~G~~G~~~a~~L~~-~g~~V~~~~r~ 32 (304)
T PRK06522 3 IA-ILGAGAIGGLFGAALAQ-AGHDVTLVARR 32 (304)
T ss_pred EE-EECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence 56 99999999999999998 47889999873
No 317
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=88.57 E-value=0.55 Score=38.97 Aligned_cols=36 Identities=36% Similarity=0.553 Sum_probs=29.3
Q ss_pred cceEEEeCccHHHHHHHHHHHHhc------------CCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVA------------HWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~------------~~~VlvIEag~~~ 76 (107)
..++ |+|||..|.=+|.+|.+.. ..+|.|||+++.-
T Consensus 156 lti~-IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 156 LTIV-IVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eEEE-EECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 4688 9999999999999987731 2499999999754
No 318
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.50 E-value=0.86 Score=36.99 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.8
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+. |||.|.+|..+|..|.+ .+.+|.+.|.....
T Consensus 3 v~-viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~~ 35 (459)
T PRK02705 3 AH-VIGLGRSGIAAARLLKA-QGWEVVVSDRNDSP 35 (459)
T ss_pred EE-EEccCHHHHHHHHHHHH-CCCEEEEECCCCch
Confidence 55 99999999999888887 58999999987543
No 319
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=88.36 E-value=0.82 Score=34.84 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=25.7
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
+. |+|+|..|+.+|..|++. +..|.++..
T Consensus 3 I~-IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 3 IA-VVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred EE-EECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 56 999999999999999984 788988877
No 320
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=0.29 Score=40.98 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=25.4
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeE-EEEcC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSV-LLLEA 72 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~V-lvIEa 72 (107)
..||++ |||+|+||.++|...++ .+.+. ++-|+
T Consensus 210 ~~yDVL-vVGgGPAgaaAAiYaAR-KGiRTGl~aer 243 (520)
T COG3634 210 DAYDVL-VVGGGPAGAAAAIYAAR-KGIRTGLVAER 243 (520)
T ss_pred CCceEE-EEcCCcchhHHHHHHHh-hcchhhhhhhh
Confidence 469999 99999999999998887 45554 33343
No 321
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.31 E-value=0.94 Score=37.20 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=28.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..+++ .+.+|.+||.++.
T Consensus 176 ~vv-IIGgG~ig~E~A~~l~~-~G~~Vtlie~~~~ 208 (466)
T PRK06115 176 HLV-VIGAGVIGLELGSVWRR-LGAQVTVVEYLDR 208 (466)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEeCCCC
Confidence 466 99999999999999987 5889999998764
No 322
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=88.26 E-value=0.88 Score=36.88 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=29.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus 177 ~v~-IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~~ 209 (461)
T PRK05249 177 SLI-IYGAGVIGCEYASIFAA-LGVKVTLINTRDR 209 (461)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 467 99999999999999998 5889999998764
No 323
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.24 E-value=0.8 Score=35.63 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=28.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|..|..+|..|.+ .+.+|.+++..+
T Consensus 4 ~V~-VIG~G~mG~~iA~~la~-~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVA-IIGAGLIGRAWAIVFAR-AGHEVRLWDADP 35 (308)
T ss_pred EEE-EECccHHHHHHHHHHHH-CCCeeEEEeCCH
Confidence 456 99999999999999998 488999998864
No 324
>KOG2844|consensus
Probab=88.14 E-value=0.61 Score=41.63 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=26.5
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEA 72 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEa 72 (107)
...|++ |||+|..|+.+|+.|++ .+.+ ++++|.
T Consensus 38 ~~A~vv-ViggG~~g~~~~yhlak-~g~k~avlle~ 71 (856)
T KOG2844|consen 38 STADVV-VIGGGSLGCSTAYHLAK-RGMKGAVLLER 71 (856)
T ss_pred CcccEE-EEcCCchhHHHHHHHHH-ccccceEEEee
Confidence 357999 99999999999999998 4666 444444
No 325
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.03 E-value=0.93 Score=37.05 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=28.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus 174 ~vv-VIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~ 206 (466)
T PRK07818 174 SIV-IAGAGAIGMEFAYVLKN-YGVDVTIVEFLDR 206 (466)
T ss_pred eEE-EECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 567 99999999999999987 4789999998764
No 326
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=87.98 E-value=0.88 Score=37.00 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+++.++.
T Consensus 150 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KAL-VVGAGYISLEVLENLYE-RGLHPTLIHRSDK 182 (438)
T ss_pred EEE-EECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence 467 99999999999999987 5789999998763
No 327
>PRK06370 mercuric reductase; Validated
Probab=87.96 E-value=0.95 Score=36.89 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=29.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus 173 ~vv-VIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~ 205 (463)
T PRK06370 173 HLV-IIGGGYIGLEFAQMFRR-FGSEVTVIERGPR 205 (463)
T ss_pred EEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCC
Confidence 467 99999999999999987 5889999998764
No 328
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=87.86 E-value=0.97 Score=37.01 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=29.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus 168 ~vv-IIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVV-IVGAGYIAVELAGVLHG-LGSETHLVIRHER 200 (450)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence 567 99999999999999997 4889999998864
No 329
>KOG0399|consensus
Probab=87.70 E-value=0.74 Score=43.67 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=33.8
Q ss_pred cCCCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 34 SLLVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 34 ~~~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
+....-..+. |||.|+||+.+|..|.+ .+..|.|-|+.....
T Consensus 1780 p~~rtg~~va-iigsgpaglaaadqlnk-~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1780 PAFRTGKRVA-IIGSGPAGLAAADQLNK-AGHTVTVYERSDRVG 1821 (2142)
T ss_pred cccccCcEEE-EEccCchhhhHHHHHhh-cCcEEEEEEecCCcC
Confidence 3333446777 99999999999999998 589999999976543
No 330
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=87.42 E-value=1.1 Score=36.21 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=28.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHh-------------cCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEV-------------AHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~-------------~~~~VlvIEag~~ 75 (107)
.++ |||+|..|.-+|..|++. .+.+|.+||.++.
T Consensus 175 ~vv-VvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFV-VVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEE-EECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 577 999999999999998762 3688999999864
No 331
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.41 E-value=1 Score=34.62 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=27.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|..|..+|..+++ .+.+|.++|...
T Consensus 5 kIa-ViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVT-VAGAGVLGSQIAFQTAF-HGFDVTIYDISD 36 (287)
T ss_pred EEE-EECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 356 99999999999999997 488999998754
No 332
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=87.23 E-value=1.1 Score=36.30 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=28.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus 171 ~v~-VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~ 203 (460)
T PRK06292 171 SLA-VIGGGVIGLELGQALSR-LGVKVTVFERGDR 203 (460)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence 567 99999999999999987 4889999998764
No 333
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.99 E-value=1.1 Score=37.15 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=29.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+++ |||+|..|.++|..|+++...+|.+.++..
T Consensus 3 ~il-viGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KIL-VIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEE-EECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 577 999999999999999997668899988864
No 334
>KOG2495|consensus
Probab=86.91 E-value=0.15 Score=43.14 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=29.0
Q ss_pred cceEEEeCccHHHHHHHHHHHHh-------------cCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEV-------------AHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~-------------~~~~VlvIEag~~ 75 (107)
..++ |||||+.|.-.|.+|+.. ...+|.+|||.+.
T Consensus 219 Lh~V-VVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFV-VVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEE-EECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 5677 999999999999999752 2468999999974
No 335
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.86 E-value=1.2 Score=35.91 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=28.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|+|..|..+|..|.+ .+.+|.++|...
T Consensus 7 ~v~-iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~ 38 (450)
T PRK14106 7 KVL-VVGAGVSGLALAKFLKK-LGAKVILTDEKE 38 (450)
T ss_pred EEE-EECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 467 99999999999999998 589999998864
No 336
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.58 E-value=1.9 Score=29.38 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=29.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.++ |+|+|.-|+.+|..|+..+-.++.|+|.....
T Consensus 4 ~v~-iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 4 RVL-IIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp EEE-EESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred EEE-EECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 467 99999999999999998645589999987654
No 337
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=86.46 E-value=1.5 Score=31.33 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=25.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEc
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLE 71 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIE 71 (107)
.++ |||||..|...+..|.+ .+.+|.||.
T Consensus 15 ~vl-VvGGG~va~rka~~Ll~-~ga~V~VIs 43 (157)
T PRK06719 15 VVV-IIGGGKIAYRKASGLKD-TGAFVTVVS 43 (157)
T ss_pred EEE-EECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 567 99999999999999987 588999984
No 338
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=86.41 E-value=1.2 Score=36.39 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=28.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.+||.++.
T Consensus 171 ~vv-VIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~ 203 (452)
T TIGR03452 171 SLV-IVGGGYIAAEFAHVFSA-LGTRVTIVNRSTK 203 (452)
T ss_pred cEE-EECCCHHHHHHHHHHHh-CCCcEEEEEccCc
Confidence 567 99999999999999987 5789999998764
No 339
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=86.22 E-value=1.3 Score=35.51 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=28.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus 151 ~vv-VvGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 183 (444)
T PRK09564 151 NIV-IIGAGFIGLEAVEAAKH-LGKNVRIIQLEDR 183 (444)
T ss_pred EEE-EECCCHHHHHHHHHHHh-cCCcEEEEeCCcc
Confidence 467 99999999999999887 4788999998753
No 340
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=86.08 E-value=1.4 Score=35.83 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=28.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..+++ .+.+|.++|.++.
T Consensus 168 ~vv-VIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SIL-ILGGGYIAVEFAGIWRG-LGVQVTLIYRGEL 200 (446)
T ss_pred eEE-EECCcHHHHHHHHHHHH-cCCeEEEEEeCCC
Confidence 467 99999999999999987 5789999998864
No 341
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=86.00 E-value=1.4 Score=36.91 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=30.4
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDEN 77 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~~ 77 (107)
++ |||+|..|+-+|..++. -+.+|.|||.++.-.
T Consensus 176 lv-IiGgG~IGlE~a~~~~~-LG~~VTiie~~~~iL 209 (454)
T COG1249 176 LV-IVGGGYIGLEFASVFAA-LGSKVTVVERGDRIL 209 (454)
T ss_pred EE-EECCCHHHHHHHHHHHH-cCCcEEEEecCCCCC
Confidence 56 99999999999999998 599999999997653
No 342
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.00 E-value=1.6 Score=32.46 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=26.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |||||..|...+..|.+ .+.+|.||+..
T Consensus 12 ~vL-VIGgG~va~~ka~~Ll~-~ga~V~VIs~~ 42 (202)
T PRK06718 12 RVV-IVGGGKVAGRRAITLLK-YGAHIVVISPE 42 (202)
T ss_pred EEE-EECCCHHHHHHHHHHHH-CCCeEEEEcCC
Confidence 577 99999999999999988 47899999753
No 343
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=85.98 E-value=1.5 Score=30.98 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=25.0
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
-.++ |||+|..+.-+|..|.+. +.+|.++=+.+
T Consensus 168 k~V~-VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 168 KRVV-VVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp SEEE-EE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CcEE-EEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 4677 999999999999999985 58888876553
No 344
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=85.84 E-value=1.5 Score=36.12 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus 185 ~vv-VvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~ 217 (475)
T PRK06327 185 KLA-VIGAGVIGLELGSVWRR-LGAEVTILEALPA 217 (475)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEeCCCc
Confidence 567 99999999999999987 4889999998764
No 345
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=85.79 E-value=1.3 Score=36.97 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=32.4
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.||++ |+|.|.--|+++.+|+- .+.+|++||+.+..
T Consensus 6 ~yDvi-i~GTgl~esils~~Ls~-~~k~VlhiD~Nd~Y 41 (434)
T COG5044 6 LYDVI-ILGTGLRESILSAALSW-DGKNVLHIDKNDYY 41 (434)
T ss_pred cccEE-EecccHHHHHHHHHhhh-cCceEEEEeCCCcc
Confidence 69999 99999999999999997 48999999997654
No 346
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.60 E-value=1.5 Score=34.17 Aligned_cols=31 Identities=35% Similarity=0.391 Sum_probs=26.6
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |||+|..|+.+|..|++ .+..|.++....
T Consensus 3 I~-IiGaGa~G~ala~~L~~-~g~~V~l~~r~~ 33 (326)
T PRK14620 3 IS-ILGAGSFGTAIAIALSS-KKISVNLWGRNH 33 (326)
T ss_pred EE-EECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence 55 99999999999999998 478898988743
No 347
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.40 E-value=1.3 Score=33.95 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=27.1
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |||+|..|..+|..|++ .+.+|.+++..+
T Consensus 4 V~-VIG~G~mG~~iA~~la~-~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LV-VVGAGVMGRGIAYVFAV-SGFQTTLVDIKQ 34 (288)
T ss_pred EE-EECccHHHHHHHHHHHh-CCCcEEEEeCCH
Confidence 45 99999999999999998 488999998764
No 348
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=85.11 E-value=1.7 Score=35.08 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=29.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.+||.++.
T Consensus 160 ~v~-ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~~ 192 (441)
T PRK08010 160 HLG-ILGGGYIGVEFASMFAN-FGSKVTILEAASL 192 (441)
T ss_pred eEE-EECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 467 99999999999999997 5889999998764
No 349
>KOG1439|consensus
Probab=84.90 E-value=0.53 Score=39.48 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=32.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+.||+| |+|-|..-|+++.+|+- .+.+|++||+.+..
T Consensus 3 eeyDvi-vlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 3 EEYDVI-VLGTGLTECILSGALSV-DGKKVLHIDRNDYY 39 (440)
T ss_pred CceeEE-EEcCCchhheeeeeeee-cCcEEEEEeCCCCC
Confidence 459999 99999999999999997 48899999997654
No 350
>KOG3923|consensus
Probab=84.88 E-value=1.5 Score=35.70 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=30.4
Q ss_pred ccceEEEeCccHHHHHHHHHHHH------hcCCeEEEEcCCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSE------VAHWSVLLLEAGPDEN 77 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~------~~~~~VlvIEag~~~~ 77 (107)
..+++ |||+|..|++.|..+.+ .+..+|.+++....+.
T Consensus 3 ~~~ia-ViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 3 TPRIA-VIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CccEE-EEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 45788 99999999999977766 2567899998877653
No 351
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=84.86 E-value=1.8 Score=35.58 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus 179 ~vv-VIGgG~ig~E~A~~l~~-~g~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLI-VVGSGVTGAEFASAYTE-LGVKVTLVSSRDR 211 (466)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEEcCCc
Confidence 467 99999999999999987 5889999998764
No 352
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.82 E-value=1.3 Score=37.33 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=29.7
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
-.++ |+|.|..|..+|.+|.+ .+..|++||..+.
T Consensus 418 ~hii-I~G~G~~G~~la~~L~~-~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHAL-LVGYGRVGSLLGEKLLA-AGIPLVVIETSRT 451 (558)
T ss_pred CCEE-EECCChHHHHHHHHHHH-CCCCEEEEECCHH
Confidence 4678 99999999999999998 4789999998754
No 353
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.74 E-value=2.3 Score=29.09 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=28.4
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
++ |||.|..|+.+|..|...+-.++.++|.....
T Consensus 2 Vl-iiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VL-LVGLGGLGSEIALNLARSGVGKITLIDFDTVE 35 (143)
T ss_pred EE-EECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence 46 99999999999999998544589999987644
No 354
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=84.74 E-value=1.8 Score=32.17 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.+++.++.
T Consensus 143 ~v~-ViG~G~~~~e~a~~l~~-~~~~V~~v~~~~~ 175 (300)
T TIGR01292 143 EVA-VVGGGDSAIEEALYLTR-IAKKVTLVHRRDK 175 (300)
T ss_pred EEE-EECCChHHHHHHHHHHh-hcCEEEEEEeCcc
Confidence 577 99999999999999987 4788999998753
No 355
>PRK13748 putative mercuric reductase; Provisional
Probab=84.66 E-value=1.8 Score=36.11 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=27.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |||+|..|+-+|..|++ .+.+|.+|+.+
T Consensus 272 ~vv-ViGgG~ig~E~A~~l~~-~g~~Vtli~~~ 302 (561)
T PRK13748 272 RLA-VIGSSVVALELAQAFAR-LGSKVTILARS 302 (561)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCEEEEEecC
Confidence 467 99999999999999987 58899999875
No 356
>PRK06116 glutathione reductase; Validated
Probab=84.60 E-value=1.8 Score=35.05 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=28.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+++.++.
T Consensus 169 ~vv-ViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~ 201 (450)
T PRK06116 169 RVA-VVGAGYIAVEFAGVLNG-LGSETHLFVRGDA 201 (450)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 567 99999999999999987 4889999998764
No 357
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.99 E-value=1.7 Score=36.73 Aligned_cols=33 Identities=33% Similarity=0.354 Sum_probs=28.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+|+.++.
T Consensus 145 ~Vv-VIGgG~~g~E~A~~L~~-~g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVF-VIGGGFAAAEEAVFLTR-YASKVTVIVREPD 177 (555)
T ss_pred EEE-EECCCHHHHHHHHHHHc-cCCEEEEEEeCCc
Confidence 467 99999999999999987 4889999998763
No 358
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.97 E-value=1.7 Score=36.19 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=28.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus 354 ~Vv-ViGgG~~g~E~A~~L~~-~g~~Vtli~~~~~ 386 (515)
T TIGR03140 354 DVA-VIGGGNSGIEAAIDLAG-IVRHVTVLEFADE 386 (515)
T ss_pred EEE-EECCcHHHHHHHHHHHh-cCcEEEEEEeCCc
Confidence 577 99999999999999987 4778999997653
No 359
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=83.88 E-value=1.9 Score=38.15 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.|||.++.
T Consensus 142 ~vv-VVGgG~~GlE~A~~L~~-~G~~Vtvv~~~~~ 174 (785)
T TIGR02374 142 KAA-VIGGGLLGLEAAVGLQN-LGMDVSVIHHAPG 174 (785)
T ss_pred eEE-EECCCHHHHHHHHHHHh-cCCeEEEEccCCc
Confidence 467 99999999999999998 4889999998764
No 360
>KOG2852|consensus
Probab=83.65 E-value=0.63 Score=37.99 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=28.7
Q ss_pred cceEEEeCccHHHHHHHHHHHHhc-----CCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVA-----HWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~-----~~~VlvIEag~ 74 (107)
-.++ |||||..|+..|+.|++.+ ...|.++|...
T Consensus 11 k~I~-IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 11 KKIV-IVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred eEEE-EECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 4667 9999999999999999864 36899999854
No 361
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.64 E-value=2.8 Score=32.62 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=27.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..+. |||+|..|..+|.+|.+ .+.+|.+.+...
T Consensus 5 m~I~-iiG~G~~G~~lA~~l~~-~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIA-ILGAGAWGSTLAGLASA-NGHRVRVWSRRS 37 (308)
T ss_pred CEEE-EECccHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 3466 99999999999999998 478999988754
No 362
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.51 E-value=2.6 Score=32.33 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=27.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|..|..+|..|.. .+..|.+.+...
T Consensus 6 kI~-vIGaG~mG~~iA~~la~-~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVG-VIGAGQMGNGIAHVCAL-AGYDVLLNDVSA 37 (292)
T ss_pred EEE-EECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 356 99999999999999998 588999998754
No 363
>PLN02507 glutathione reductase
Probab=83.50 E-value=2 Score=35.85 Aligned_cols=33 Identities=24% Similarity=0.064 Sum_probs=28.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.|++.++.
T Consensus 205 ~vv-VIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAV-VLGGGYIAVEFASIWRG-MGATVDLFFRKEL 237 (499)
T ss_pred eEE-EECCcHHHHHHHHHHHH-cCCeEEEEEecCC
Confidence 567 99999999999999987 4889999998764
No 364
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=83.44 E-value=2 Score=33.41 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=27.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|..|..+|.+|.+ .+.+|.+++...
T Consensus 4 kI~-IiG~G~mG~~~A~~L~~-~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RIC-VLGAGSIGCYLGGRLAA-AGADVTLIGRAR 35 (341)
T ss_pred eEE-EECCCHHHHHHHHHHHh-cCCcEEEEecHH
Confidence 466 99999999999999998 478899998753
No 365
>PRK14694 putative mercuric reductase; Provisional
Probab=83.36 E-value=2.3 Score=34.88 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |||+|..|+-+|..|.+ .+.+|.+++.+
T Consensus 180 ~vv-ViG~G~~G~E~A~~l~~-~g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLL-VIGASVVALELAQAFAR-LGSRVTVLARS 210 (468)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEECC
Confidence 467 99999999999999987 57899999864
No 366
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.34 E-value=2.5 Score=32.37 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=27.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|..|..+|.+|.+ .+..|.+++..+
T Consensus 3 kI~-iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIA-VLGAGSWGTALAIVLAR-NGHDVTLWARDP 34 (325)
T ss_pred EEE-EECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 466 99999999999999998 478898888753
No 367
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.32 E-value=2.2 Score=32.77 Aligned_cols=31 Identities=16% Similarity=0.384 Sum_probs=27.0
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |||+|..|..+|..++. .+..|.++|..+
T Consensus 6 I~-ViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (291)
T PRK06035 6 IG-VVGSGVMGQGIAQVFAR-TGYDVTIVDVSE 36 (291)
T ss_pred EE-EECccHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 55 99999999999999987 588999998754
No 368
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.26 E-value=3.1 Score=28.64 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=26.5
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
-.++ |+|+|-+|..++..|.+..-.+|.|+.+.
T Consensus 13 ~~vl-viGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 13 KRVL-VIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp SEEE-EESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CEEE-EECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4677 99999999999999998633448888764
No 369
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=83.13 E-value=2.2 Score=32.19 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=27.5
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCC---eEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHW---SVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~---~VlvIEag~ 74 (107)
-.++ |+|+|.+|..+|..|.+. +. +|.+++..+
T Consensus 26 ~rvl-vlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIV-INGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CEEE-EECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 3677 999999999999999874 44 699998874
No 370
>PRK10262 thioredoxin reductase; Provisional
Probab=82.90 E-value=2.3 Score=32.75 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=27.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |||+|..|+-+|..|++. +.+|.+++.++
T Consensus 148 ~vv-VvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~ 179 (321)
T PRK10262 148 KVA-VIGGGNTAVEEALYLSNI-ASEVHLIHRRD 179 (321)
T ss_pred EEE-EECCCHHHHHHHHHHHhh-CCEEEEEEECC
Confidence 567 999999999999999974 78999999875
No 371
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.56 E-value=2.8 Score=30.99 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=27.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|.|..|..+|.+|.+ .+.+|++.|...
T Consensus 30 ~v~-I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVA-VQGLGKVGYKLAEHLLE-EGAKLIVADINE 61 (200)
T ss_pred EEE-EECCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence 577 99999999999999998 588999887653
No 372
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.40 E-value=2.3 Score=34.20 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=29.1
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
-.++ |+|+|..|..+|..|.+ .+..|+++|..+.
T Consensus 232 ~~ii-IiG~G~~g~~l~~~L~~-~~~~v~vid~~~~ 265 (453)
T PRK09496 232 KRVM-IVGGGNIGYYLAKLLEK-EGYSVKLIERDPE 265 (453)
T ss_pred CEEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence 3578 99999999999999998 5889999987653
No 373
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=82.39 E-value=2.3 Score=37.25 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus 314 ~Vv-IVGgG~iGvE~A~~l~~-~G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMG-IVGMGIIGLEFMDIYTA-LGSEVVSFEYSPQ 346 (659)
T ss_pred ceE-EECCCHHHHHHHHHHHh-CCCeEEEEeccCc
Confidence 467 99999999999999987 4789999999764
No 374
>PRK14727 putative mercuric reductase; Provisional
Probab=82.34 E-value=2.5 Score=34.85 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=27.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |||+|..|+-+|..|.+ .+.+|.+|+..
T Consensus 190 ~vv-VIGgG~iG~E~A~~l~~-~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLT-VIGSSVVAAEIAQAYAR-LGSRVTILARS 220 (479)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCEEEEEEcC
Confidence 467 99999999999999987 58899999875
No 375
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.05 E-value=2.4 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|.-|..+|..++. .+..|.+.|..+
T Consensus 9 ~Va-VIGaG~MG~giA~~~a~-aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFA-AIGSGVIGSGWVARALA-HGLDVVAWDPAP 40 (321)
T ss_pred EEE-EECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 355 99999999999999987 699999998864
No 376
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=81.96 E-value=2.9 Score=31.10 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=27.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |||||..|..-+..|.+ .+.+|.|+....
T Consensus 11 ~vl-VvGgG~va~rk~~~Ll~-~ga~VtVvsp~~ 42 (205)
T TIGR01470 11 AVL-VVGGGDVALRKARLLLK-AGAQLRVIAEEL 42 (205)
T ss_pred eEE-EECcCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 567 99999999999999988 588999997643
No 377
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.85 E-value=2.3 Score=32.97 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
.+. |||+|.-|..+|..+.. .+..|.++|..+..
T Consensus 7 ~V~-ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVG-VVGAGQMGAGIAEVCAR-AGVDVLVFETTEEL 40 (286)
T ss_pred EEE-EEcccHHHHHHHHHHHh-CCCEEEEEECCHHH
Confidence 355 99999999999999987 58999999887543
No 378
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.80 E-value=2.7 Score=32.41 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|..|..+|..|.+ .+..|.+++...
T Consensus 6 ~I~-vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLA-IIGAGTMGSGIAALFAR-KGLQVVLIDVME 37 (311)
T ss_pred EEE-EECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence 355 99999999999999987 578999998644
No 379
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=81.64 E-value=4 Score=25.80 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=26.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEa 72 (107)
.++ |+|.|..|..++..|.+....+|.+.+.
T Consensus 25 ~v~-i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 25 TVV-VLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred EEE-EECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 577 9999999999999999854678888876
No 380
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=81.51 E-value=2.2 Score=28.11 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=27.0
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
-.++ |||+|..|..-+..|.+ .+.+|.|+...
T Consensus 8 ~~vl-VvGgG~va~~k~~~Ll~-~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVL-VVGGGPVAARKARLLLE-AGAKVTVISPE 39 (103)
T ss_dssp -EEE-EEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred CEEE-EECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence 3567 99999999999999987 57899998776
No 381
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=81.45 E-value=2.5 Score=35.19 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+++ |||+|..|+-+|..|+. .+.+|.+++.++.
T Consensus 353 ~Vv-VVGgG~~g~e~A~~L~~-~~~~Vtlv~~~~~ 385 (517)
T PRK15317 353 RVA-VIGGGNSGVEAAIDLAG-IVKHVTVLEFAPE 385 (517)
T ss_pred EEE-EECCCHHHHHHHHHHHh-cCCEEEEEEECcc
Confidence 577 99999999999999987 4789999988754
No 382
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.44 E-value=2.8 Score=32.68 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|.-|..+|.+|.+ .+..|.+++...
T Consensus 6 ~I~-iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVA-VLGAGAWGTALAVLAAS-KGVPVRLWARRP 37 (328)
T ss_pred eEE-EECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 466 99999999999999998 478999998853
No 383
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.44 E-value=2.6 Score=33.90 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|+|..|..+|..|.+ .+..|.++|..+
T Consensus 2 ~vi-IiG~G~ig~~~a~~L~~-~g~~v~vid~~~ 33 (453)
T PRK09496 2 KII-IVGAGQVGYTLAENLSG-ENNDVTVIDTDE 33 (453)
T ss_pred EEE-EECCCHHHHHHHHHHHh-CCCcEEEEECCH
Confidence 467 99999999999999998 478999998754
No 384
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.79 E-value=2.4 Score=31.01 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.0
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |+|.|..|+.+|..|++ .+.+|..+|..+
T Consensus 3 I~-ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~ 33 (185)
T PF03721_consen 3 IA-VIGLGYVGLPLAAALAE-KGHQVIGVDIDE 33 (185)
T ss_dssp EE-EE--STTHHHHHHHHHH-TTSEEEEE-S-H
T ss_pred EE-EECCCcchHHHHHHHHh-CCCEEEEEeCCh
Confidence 45 89999999999999998 589999998865
No 385
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.74 E-value=3.2 Score=33.47 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.8
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
++ |+|+|..|.++|..|.+ .+.+|.+.|...
T Consensus 8 v~-v~G~g~~G~s~a~~l~~-~G~~V~~~d~~~ 38 (447)
T PRK02472 8 VL-VLGLAKSGYAAAKLLHK-LGANVTVNDGKP 38 (447)
T ss_pred EE-EEeeCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 56 99999999999999987 589999998654
No 386
>PLN02546 glutathione reductase
Probab=80.74 E-value=2.9 Score=35.74 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=28.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ .+.+|.++|.++.
T Consensus 254 ~V~-VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIA-IVGGGYIALEFAGIFNG-LKSDVHVFIRQKK 286 (558)
T ss_pred eEE-EECCCHHHHHHHHHHHh-cCCeEEEEEeccc
Confidence 567 99999999999999987 4789999998754
No 387
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=80.68 E-value=2.7 Score=37.70 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=28.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+ .+.+|.|||.++.
T Consensus 147 ~vv-VIGgG~iGlE~A~~L~~-~G~~VtvVe~~~~ 179 (847)
T PRK14989 147 RGA-VVGGGLLGLEAAGALKN-LGVETHVIEFAPM 179 (847)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 356 99999999999999998 4889999998764
No 388
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.66 E-value=3.7 Score=32.92 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=29.8
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..++ |||+|..|+.+|..|+..+--++.|+|....+
T Consensus 25 ~~Vl-IiG~GglGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 25 KHVL-IVGAGALGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred CcEE-EECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 4688 99999999999999998533489999987644
No 389
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=80.23 E-value=3.1 Score=34.07 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=28.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..+.+ .+.+|.+++.+..
T Consensus 274 ~Vv-VIGgG~~a~d~A~~l~~-~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVV-VIGGGNTAVDSARTALR-LGAEVHCLYRRTR 306 (449)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCEEEEEeecCc
Confidence 577 99999999999999987 4778999988753
No 390
>PTZ00058 glutathione reductase; Provisional
Probab=80.00 E-value=2.9 Score=35.75 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=28.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|++ -+.+|.+||.++.
T Consensus 239 ~Vv-IIGgG~iGlE~A~~l~~-~G~~Vtli~~~~~ 271 (561)
T PTZ00058 239 RIG-IAGSGYIAVELINVVNR-LGAESYIFARGNR 271 (561)
T ss_pred EEE-EECCcHHHHHHHHHHHH-cCCcEEEEEeccc
Confidence 467 99999999999999987 5889999998763
No 391
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.90 E-value=3.1 Score=31.74 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=26.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|..|..+|..+.+ .+..|.++|..+
T Consensus 5 kI~-VIG~G~mG~~ia~~la~-~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIG-VIGAGTMGNGIAQVCAV-AGYDVVMVDISD 36 (282)
T ss_pred EEE-EEccCHHHHHHHHHHHH-CCCceEEEeCCH
Confidence 456 99999999999999998 478999998543
No 392
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=79.74 E-value=3.5 Score=32.40 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=26.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~ 74 (107)
.++ |||+|..|+-+|..|.+. +.+ |.||+.+.
T Consensus 174 ~vv-ViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVV-VVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEE-EECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 467 999999999999998864 554 99998754
No 393
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.58 E-value=3.8 Score=31.45 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=27.1
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |||+|.-|..+|..+.. .+..|.+.|...
T Consensus 7 V~-vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VG-VVGAGQMGSGIAQLAAA-AGMDVWLLDSDP 37 (295)
T ss_pred EE-EECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 55 99999999999999997 589999998764
No 394
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=79.39 E-value=3.8 Score=32.89 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=30.4
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||+|.-|+.+|..|+..+--++.++|.....
T Consensus 24 ~~~Vl-VvG~GglGs~va~~La~aGvg~i~lvD~D~Ve 60 (339)
T PRK07688 24 EKHVL-IIGAGALGTANAEMLVRAGVGKVTIVDRDYVE 60 (339)
T ss_pred CCcEE-EECCCHHHHHHHHHHHHcCCCeEEEEeCCccC
Confidence 35788 99999999999999998533489999997543
No 395
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=79.20 E-value=4.2 Score=29.95 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=30.5
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||.|..|+.+|..|+..+-.++.++|.....
T Consensus 21 ~~~Vl-viG~GglGs~ia~~La~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 21 NSHVL-IIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD 57 (202)
T ss_pred CCCEE-EECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence 35788 99999999999999998544589999987543
No 396
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=78.98 E-value=3.3 Score=32.76 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=25.5
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |+|+|.-|+..|++|++. +..|+++-.+.
T Consensus 3 I~-IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~ 33 (307)
T COG1893 3 IL-ILGAGAIGSLLGARLAKA-GHDVTLLVRSR 33 (307)
T ss_pred EE-EECCcHHHHHHHHHHHhC-CCeEEEEecHH
Confidence 45 999999999999999995 46777776655
No 397
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=78.93 E-value=4.5 Score=30.00 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~ 74 (107)
..++ |+|+|.-|+.+|..|+.. +. ++.++|...
T Consensus 22 ~~V~-IvG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 55 (200)
T TIGR02354 22 ATVA-ICGLGGLGSNVAINLARA-GIGKLILVDFDV 55 (200)
T ss_pred CcEE-EECcCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 5678 999999999999999985 65 799998873
No 398
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.87 E-value=4.6 Score=29.15 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=27.6
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
++ |+|+|..|+.+|..|+..+-.++.++|.....
T Consensus 2 Vl-ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~ 35 (174)
T cd01487 2 VG-IAGAGGLGSNIAVLLARSGVGNLKLVDFDVVE 35 (174)
T ss_pred EE-EECcCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 45 99999999999999998533469999987643
No 399
>PRK04148 hypothetical protein; Provisional
Probab=78.85 E-value=2.3 Score=30.23 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ +||.| .|..+|..|++ .+..|+.+|-.+.
T Consensus 19 kil-eIG~G-fG~~vA~~L~~-~G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIV-ELGIG-FYFKVAKKLKE-SGFDVIVIDINEK 50 (134)
T ss_pred EEE-EEEec-CCHHHHHHHHH-CCCEEEEEECCHH
Confidence 577 99999 88888889997 5899999997654
No 400
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=78.35 E-value=4.7 Score=30.09 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=30.3
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||.|..|+.+|..|+..+-.++.++|.....
T Consensus 21 ~~~Vl-ivG~GglGs~va~~La~~Gvg~i~lvD~D~ve 57 (228)
T cd00757 21 NARVL-VVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVE 57 (228)
T ss_pred CCcEE-EECCCHHHHHHHHHHHHcCCCEEEEEcCCEEc
Confidence 35788 99999999999999998655588888876543
No 401
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.29 E-value=4.4 Score=31.77 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=26.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~ 74 (107)
.+. |||+|..|+.+|..|...+- ..|.++|...
T Consensus 2 kI~-IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVA-IVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEE-EECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 356 99999999999999988432 5799999754
No 402
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=78.12 E-value=4.6 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=23.4
Q ss_pred EeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
+||.|..|..+|.+|.+ .+.+|.+.+..
T Consensus 6 ~IGlG~mG~~~a~~L~~-~g~~v~~~d~~ 33 (163)
T PF03446_consen 6 FIGLGNMGSAMARNLAK-AGYEVTVYDRS 33 (163)
T ss_dssp EE--SHHHHHHHHHHHH-TTTEEEEEESS
T ss_pred EEchHHHHHHHHHHHHh-cCCeEEeeccc
Confidence 89999999999999987 58999998865
No 403
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=78.09 E-value=4.1 Score=32.02 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=26.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.+. |||+|..|+.+|..++......|.++|.-
T Consensus 3 KV~-VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KIS-VIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEE-EECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 456 99999999999999988432279999984
No 404
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=78.03 E-value=3.2 Score=33.05 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=24.8
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~ 74 (107)
++ |+|+|..|..++..|.+.... +|++.+...
T Consensus 1 Il-vlG~G~vG~~~~~~L~~~~~~~~v~va~r~~ 33 (386)
T PF03435_consen 1 IL-VLGAGRVGSAIARLLARRGPFEEVTVADRNP 33 (386)
T ss_dssp EE-EE--SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred CE-EEcCcHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence 35 899999999999999987655 888887754
No 405
>PRK08328 hypothetical protein; Provisional
Probab=77.96 E-value=4.9 Score=30.32 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=29.5
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..++ |+|+|-.|+.+|..|+..+--++.++|.....
T Consensus 28 ~~Vl-IiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 28 AKVA-VVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CcEE-EECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 4688 99999999999999998655678888776543
No 406
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=77.95 E-value=4.1 Score=31.36 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=24.4
Q ss_pred EeCccHHHHHHHHHHHH-hcCCeEEEEcCCCC
Q psy4105 45 SLGGGSAGAVVASRLSE-VAHWSVLLLEAGPD 75 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~-~~~~~VlvIEag~~ 75 (107)
|||+|.+|..+|..+.+ .++..|.++.....
T Consensus 3 ivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~ 34 (415)
T COG0446 3 IVGGGAAGLSAATTLRRLLLAAEITLIGREPK 34 (415)
T ss_pred EECCcHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 99999999999998876 45667776666543
No 407
>PTZ00052 thioredoxin reductase; Provisional
Probab=77.87 E-value=3.7 Score=34.18 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=27.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |||+|..|+-+|..|++ .+.+|.+++..
T Consensus 184 ~vv-IIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTL-IVGASYIGLETAGFLNE-LGFDVTVAVRS 214 (499)
T ss_pred eEE-EECCCHHHHHHHHHHHH-cCCcEEEEEcC
Confidence 567 99999999999999998 47899999863
No 408
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=77.66 E-value=5.1 Score=28.46 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=26.7
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
..++ |+|+|.+|.-++.-+.. -+.+|.++|...
T Consensus 21 ~~vv-v~G~G~vg~gA~~~~~~-lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVV-VTGAGRVGQGAAEIAKG-LGAEVVVPDERP 53 (168)
T ss_dssp -EEE-EESTSHHHHHHHHHHHH-TT-EEEEEESSH
T ss_pred eEEE-EECCCHHHHHHHHHHhH-CCCEEEeccCCH
Confidence 5778 99999999999998887 488899888754
No 409
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=77.56 E-value=4.4 Score=33.85 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=27.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHh--cCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEV--AHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~--~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..+..- .+.+|.|||.++.
T Consensus 189 ~vv-IIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVL-TVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred eEE-EECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 467 999999999999766531 3789999998864
No 410
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.39 E-value=3.1 Score=35.91 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=29.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
-.++ |+|.|..|..+|..|.+ .+.++.+||..+.
T Consensus 401 ~~vI-I~G~Gr~G~~va~~L~~-~g~~vvvID~d~~ 434 (621)
T PRK03562 401 PRVI-IAGFGRFGQIVGRLLLS-SGVKMTVLDHDPD 434 (621)
T ss_pred CcEE-EEecChHHHHHHHHHHh-CCCCEEEEECCHH
Confidence 4688 99999999999999998 4889999998764
No 411
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=77.16 E-value=4.8 Score=31.34 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=26.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |+|+|-+|.+++..|.+..-.+|.|++..
T Consensus 129 ~vl-IlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 129 RVV-QLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred EEE-EECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 577 99999999999999998533478888764
No 412
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=77.14 E-value=3.8 Score=34.03 Aligned_cols=31 Identities=13% Similarity=0.067 Sum_probs=26.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |||+|..|+-+|..|++ .+.+|.+++..
T Consensus 182 ~vv-IIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTL-VVGASYVALECAGFLAG-IGLDVTVMVRS 212 (484)
T ss_pred CEE-EECCCHHHHHHHHHHHH-hCCcEEEEEec
Confidence 467 99999999999999998 47899999864
No 413
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=77.04 E-value=4.5 Score=32.69 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=27.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.+++ |+|+|.+|..++..+... +.+|.+++..
T Consensus 168 ~~Vl-ViGaG~vG~~aa~~a~~l-Ga~V~v~d~~ 199 (370)
T TIGR00518 168 GDVT-IIGGGVVGTNAAKMANGL-GATVTILDIN 199 (370)
T ss_pred ceEE-EEcCCHHHHHHHHHHHHC-CCeEEEEECC
Confidence 4688 999999999999999874 6789999864
No 414
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=76.82 E-value=4.9 Score=31.16 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=25.4
Q ss_pred EeCccHHHHHHHHHHHHhcCC-eEEEEcCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHW-SVLLLEAGPD 75 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~~ 75 (107)
|||+|..|..+|..++.. +. .|.++|..+.
T Consensus 3 IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 3 IIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred EECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 899999999999998873 44 9999998753
No 415
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=76.79 E-value=6.6 Score=24.68 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=24.0
Q ss_pred EeCccHHHHHHHHHHHHhcC---CeEEEE-cCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAH---WSVLLL-EAGP 74 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~---~~VlvI-Eag~ 74 (107)
+||+|.-|..++..|.+. + .+|.++ +..+
T Consensus 4 iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSP 36 (96)
T ss_dssp EESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSH
T ss_pred EECCCHHHHHHHHHHHHC-CCCceeEEeeccCcH
Confidence 899999999999999984 5 788866 5554
No 416
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=76.74 E-value=4.7 Score=32.90 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.8
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |||+|..|+-+|..|.+....+|.+++...
T Consensus 275 ~Vv-ViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 275 RVV-VIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred eEE-EECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 567 999999999999999874333899998754
No 417
>PRK06223 malate dehydrogenase; Reviewed
Probab=76.52 E-value=5.1 Score=30.94 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=26.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~ 74 (107)
.+. |||+|..|..+|..++.. +. .|.++|..+
T Consensus 4 KI~-VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KIS-IIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEE-EECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 566 999999999999999874 33 899998743
No 418
>KOG2018|consensus
Probab=76.48 E-value=4 Score=33.78 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=28.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.|++|||+|-.|+-++..|.+.+-.++.++|-...
T Consensus 75 syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqV 109 (430)
T KOG2018|consen 75 SYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQV 109 (430)
T ss_pred cEEEEEecCchhHHHHHHHHHhcCceEEEechhhc
Confidence 45558999999999999999976678999887543
No 419
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=76.39 E-value=5.6 Score=31.04 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=26.7
Q ss_pred eEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGPD 75 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~~ 75 (107)
+. |||+|..|..+|..|....- ..+.+++....
T Consensus 3 I~-IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VV-IIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EE-EECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 45 99999999999999987432 47999988543
No 420
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=76.39 E-value=0.98 Score=38.28 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=25.2
Q ss_pred EeCccHHHHHHHHHHHHh---cCCeEEEEcCCC
Q psy4105 45 SLGGGSAGAVVASRLSEV---AHWSVLLLEAGP 74 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~---~~~~VlvIEag~ 74 (107)
+||+|.||+++|-.|.++ .+.++-++|.-+
T Consensus 27 ~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelp 59 (587)
T COG4716 27 IVGGGLASLAAAVFLIRDGQMDGKRIHILEELP 59 (587)
T ss_pred EEccchHhhhheeEEEeccccCCceeEeeecCc
Confidence 799999999999998775 367999999743
No 421
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=76.26 E-value=5.8 Score=29.60 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=30.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||+|..|+.+|..|+..+-.++.++|....+
T Consensus 28 ~~~V~-ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 64 (212)
T PRK08644 28 KAKVG-IAGAGGLGSNIAVALARSGVGNLKLVDFDVVE 64 (212)
T ss_pred CCCEE-EECcCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 35678 99999999999999998544569999987533
No 422
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=76.21 E-value=5.5 Score=31.19 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.9
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |+|.|..|+.+|..|+..+--++.|+|.....
T Consensus 30 ~s~Vl-VvG~GGVGs~vae~Lar~GVg~itLiD~D~V~ 66 (268)
T PRK15116 30 DAHIC-VVGIGGVGSWAAEALARTGIGAITLIDMDDVC 66 (268)
T ss_pred CCCEE-EECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence 35788 99999999999999998544689999987654
No 423
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=76.08 E-value=6.2 Score=30.08 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=30.5
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||.|..|+.+|..|+..+--++.++|....+
T Consensus 32 ~~~Vl-iiG~GglGs~va~~La~~Gvg~i~lvD~D~ve 68 (245)
T PRK05690 32 AARVL-VVGLGGLGCAASQYLAAAGVGTLTLVDFDTVS 68 (245)
T ss_pred CCeEE-EECCCHHHHHHHHHHHHcCCCEEEEEcCCEEC
Confidence 35788 99999999999999998544588888887654
No 424
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=75.72 E-value=5.2 Score=30.64 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=26.4
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |||.|..|..+|..|.+ .+.+|.+++...
T Consensus 3 I~-IIG~G~mG~sla~~L~~-~g~~V~~~d~~~ 33 (279)
T PRK07417 3 IG-IVGLGLIGGSLGLDLRS-LGHTVYGVSRRE 33 (279)
T ss_pred EE-EEeecHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 45 99999999999999988 478899998653
No 425
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=75.64 E-value=2.3 Score=29.67 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=27.5
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
...+..+- |||+|..|..++..|.+ .+..|.-+....
T Consensus 7 ~~~~l~I~-iIGaGrVG~~La~aL~~-ag~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIG-IIGAGRVGTALARALAR-AGHEVVGVYSRS 43 (127)
T ss_dssp -----EEE-EECTSCCCCHHHHHHHH-TTSEEEEESSCH
T ss_pred CCCccEEE-EECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence 44456777 99999999999999997 578888877654
No 426
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=75.46 E-value=6.1 Score=30.08 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=30.5
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..++ |+|.|..|+.+|..|+..+--++.++|.....
T Consensus 25 ~~Vl-vvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 25 SRVL-IVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CcEE-EECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 5788 99999999999999998655688888887655
No 427
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=75.36 E-value=6.2 Score=31.32 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=27.5
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+. |||+|..|..+|..+....-..|.|+|..+.
T Consensus 7 ~KI~-IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKIS-LIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEE-EECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3567 9999999999999988642247999997654
No 428
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=75.22 E-value=5.3 Score=30.55 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=25.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
..++ |||||..+.-=+..|.+ .+.+|.||-..
T Consensus 26 ~~VL-VVGGG~VA~RK~~~Ll~-~gA~VtVVap~ 57 (223)
T PRK05562 26 IKVL-IIGGGKAAFIKGKTFLK-KGCYVYILSKK 57 (223)
T ss_pred CEEE-EECCCHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 4678 99999999888888777 57888888543
No 429
>PRK12831 putative oxidoreductase; Provisional
Probab=74.97 E-value=5.4 Score=32.98 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=27.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..|.+. +.+|.+|+....
T Consensus 283 ~Vv-VIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~ 315 (464)
T PRK12831 283 KVA-VVGGGNVAMDAARTALRL-GAEVHIVYRRSE 315 (464)
T ss_pred eEE-EECCcHHHHHHHHHHHHc-CCEEEEEeecCc
Confidence 567 999999999999988874 677999987653
No 430
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=74.17 E-value=4.5 Score=34.72 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=29.6
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
-.++ |+|.|..|..+|..|.+ .+..+++||..+.
T Consensus 401 ~~vI-I~G~Gr~G~~va~~L~~-~g~~vvvID~d~~ 434 (601)
T PRK03659 401 PQVI-IVGFGRFGQVIGRLLMA-NKMRITVLERDIS 434 (601)
T ss_pred CCEE-EecCchHHHHHHHHHHh-CCCCEEEEECCHH
Confidence 4678 99999999999999987 5889999998754
No 431
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=74.17 E-value=8.1 Score=26.22 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=26.1
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|+|..|..++..|.+....+|.+++...
T Consensus 21 ~i~-iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 21 KVL-ILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred EEE-EECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 466 999999999999999874346788887643
No 432
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=74.03 E-value=5.1 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=24.8
Q ss_pred EeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
|+|+|..+..++.-+.. -+++|.++|..+.
T Consensus 3 I~GaG~va~al~~la~~-lg~~v~v~d~r~e 32 (136)
T PF13478_consen 3 IFGAGHVARALARLAAL-LGFRVTVVDPRPE 32 (136)
T ss_dssp EES-STCHHHHHHHHHH-CTEEEEEEES-CC
T ss_pred EEeCcHHHHHHHHHHHh-CCCEEEEEcCCcc
Confidence 89999999999887776 5999999999865
No 433
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=74.02 E-value=4.8 Score=32.61 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=26.9
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. |||.|..|+.+|..|++ .+.+|.+++...
T Consensus 3 I~-vIGlG~~G~~lA~~La~-~G~~V~~~d~~~ 33 (411)
T TIGR03026 3 IA-VIGLGYVGLPLAALLAD-LGHEVTGVDIDQ 33 (411)
T ss_pred EE-EECCCchhHHHHHHHHh-cCCeEEEEECCH
Confidence 44 99999999999999998 588999998754
No 434
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.56 E-value=7.3 Score=31.62 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=27.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |+|.|..|..+|..|.+ .+.+|.+.|....
T Consensus 7 ~~~-v~G~g~~G~~~a~~l~~-~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KIL-VAGLGGTGISMIAYLRK-NGAEVAAYDAELK 39 (445)
T ss_pred EEE-EECCCHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 466 99999999999988887 5889999987653
No 435
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=73.47 E-value=5.3 Score=31.27 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=27.0
Q ss_pred cceEEEeCccHHHHHHHHHHHHhc----------CCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVA----------HWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~----------~~~VlvIEag~~ 75 (107)
-.++ +.|+|+||..+|..|.+.. ..++.++|..+.
T Consensus 26 ~riv-~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 26 HKVL-FNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred cEEE-EECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 4678 9999999999999887631 127888888653
No 436
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=73.25 E-value=7.2 Score=28.76 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=25.2
Q ss_pred eEEEeC-ccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 42 FPVSLG-GGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG-~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
+. ||| .|..|..+|.+|.+ .+.+|.+.....
T Consensus 3 I~-IIGG~G~mG~ala~~L~~-~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IA-VLGGTGDQGKGLALRLAK-AGNKIIIGSRDL 34 (219)
T ss_pred EE-EEcCCCHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence 45 897 79999999999998 468888886543
No 437
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.18 E-value=6.6 Score=32.65 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=27.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|.|..|..+|..+.. .+.+|.++|..+
T Consensus 204 tVv-ViG~G~IG~~va~~ak~-~Ga~ViV~d~d~ 235 (413)
T cd00401 204 VAV-VAGYGDVGKGCAQSLRG-QGARVIVTEVDP 235 (413)
T ss_pred EEE-EECCCHHHHHHHHHHHH-CCCEEEEEECCh
Confidence 456 99999999999999887 477999998764
No 438
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=73.09 E-value=6.6 Score=30.68 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=27.9
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
-.+. |+|.|..|..+|.+|... +.+|.+.+...
T Consensus 152 k~v~-IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVM-VLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CEEE-EEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3567 999999999999999874 67999988754
No 439
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=73.05 E-value=7.9 Score=28.79 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=28.0
Q ss_pred eEEEeCc-cHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 42 FPVSLGG-GSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 42 ~i~IvG~-G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
++ |.|+ |..|..++.+|.+. +..|..+......
T Consensus 3 IL-VtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~ 36 (314)
T COG0451 3 IL-VTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDG 36 (314)
T ss_pred EE-EEcCcccHHHHHHHHHHhC-CCeEEEEeCCCcc
Confidence 66 8885 99999999999984 8999999986544
No 440
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=73.02 E-value=6.5 Score=32.21 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||.|..|+.+|..|++ .+.+|.+++..+
T Consensus 5 kI~-VIGlG~~G~~~A~~La~-~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TIS-VIGLGYIGLPTAAAFAS-RQKQVIGVDINQ 36 (415)
T ss_pred EEE-EECcchhhHHHHHHHHh-CCCEEEEEeCCH
Confidence 456 99999999999999998 479999998754
No 441
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=72.12 E-value=6.2 Score=33.02 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=27.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |||+|.-|...|..|.. .+.+|.+.+..+
T Consensus 6 kIa-vIG~G~MG~~iA~~la~-~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAA-CIGGGVIGGGWAARFLL-AGIDVAVFDPHP 37 (495)
T ss_pred EEE-EECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 355 99999999999999997 589999998754
No 442
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=72.08 E-value=8.2 Score=27.63 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=28.2
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
-.+- |||.|..|..+|.+|.. -+.+|+..+....
T Consensus 37 ~tvg-IiG~G~IG~~vA~~l~~-fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 37 KTVG-IIGYGRIGRAVARRLKA-FGMRVIGYDRSPK 70 (178)
T ss_dssp SEEE-EESTSHHHHHHHHHHHH-TT-EEEEEESSCH
T ss_pred CEEE-EEEEcCCcCeEeeeeec-CCceeEEecccCC
Confidence 3555 99999999999999997 5899999988754
No 443
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=71.92 E-value=8.8 Score=25.68 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.6
Q ss_pred EeC-ccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 45 SLG-GGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 45 IvG-~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
||| .|..|..+...|.+.+...++.+-....
T Consensus 4 IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 4 IVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred EECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 899 8999999999999988888666555444
No 444
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=71.87 E-value=6.4 Score=31.74 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.5
Q ss_pred eEEEeCccHHHHHHHHHHHHhcC--------CeEEEEcC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAH--------WSVLLLEA 72 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~--------~~VlvIEa 72 (107)
+. |||+|..|.++|..|+++ + .+|.+-..
T Consensus 2 I~-VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 2 VA-VVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF 38 (342)
T ss_pred EE-EECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence 45 999999999999999984 5 78888765
No 445
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=71.72 E-value=6.9 Score=32.95 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=27.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhc-CCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVA-HWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~-~~~VlvIEag~ 74 (107)
.+. |||.|..|+.+|..|++.. +.+|..+|...
T Consensus 3 ~I~-ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KIC-CIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEE-EECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 466 9999999999999999842 68898888654
No 446
>PRK08017 oxidoreductase; Provisional
Probab=71.57 E-value=9 Score=27.78 Aligned_cols=30 Identities=20% Similarity=0.101 Sum_probs=25.0
Q ss_pred eEEEeCc-cHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 42 FPVSLGG-GSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 42 ~i~IvG~-G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
++ |.|+ |..|..+|.+|.+. +.+|.++...
T Consensus 5 vl-VtGasg~IG~~la~~l~~~-g~~v~~~~r~ 35 (256)
T PRK08017 5 VL-ITGCSSGIGLEAALELKRR-GYRVLAACRK 35 (256)
T ss_pred EE-EECCCChHHHHHHHHHHHC-CCEEEEEeCC
Confidence 66 8888 89999999999874 7888887654
No 447
>KOG0404|consensus
Probab=71.56 E-value=4.9 Score=32.03 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=27.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |||.|+|+-.+|..+++ ..++-+|.|..-
T Consensus 10 ~v~-IiGSGPAa~tAAiYaar-aelkPllfEG~~ 41 (322)
T KOG0404|consen 10 NVV-IIGSGPAAHTAAIYAAR-AELKPLLFEGMM 41 (322)
T ss_pred eEE-EEccCchHHHHHHHHhh-cccCceEEeeee
Confidence 567 99999999999999887 588999999743
No 448
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=71.48 E-value=9.3 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=26.3
Q ss_pred eEEEeCc-cHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105 42 FPVSLGG-GSAGAVVASRLSEVAH-WSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~-G~aG~~~A~~L~~~~~-~~VlvIEag~ 74 (107)
+. |||+ |..|..+|..|...+- ..+.++|...
T Consensus 3 V~-IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 3 VA-IIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EE-EESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EE-EECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 55 9999 9999999999998543 4588888874
No 449
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=71.32 E-value=6.2 Score=30.18 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=25.5
Q ss_pred EeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 45 SLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 45 IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
|||.|..|..+|.+|.+ .+.+|.+.+...
T Consensus 4 vIG~G~mG~~iA~~l~~-~G~~V~~~dr~~ 32 (291)
T TIGR01505 4 FIGLGIMGSPMSINLAK-AGYQLHVTTIGP 32 (291)
T ss_pred EEEecHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 89999999999999998 478999988654
No 450
>PTZ00117 malate dehydrogenase; Provisional
Probab=71.30 E-value=8.3 Score=30.48 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.8
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..+. |||+|..|..+|..+....-..+.|+|-...
T Consensus 6 ~KI~-IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 6 KKIS-MIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred cEEE-EECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 4677 9999999999999888743257999987543
No 451
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=71.20 E-value=7.8 Score=30.72 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=27.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHh---cC-------CeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEV---AH-------WSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~---~~-------~~VlvIEag~~ 75 (107)
..++ +.|+|+||..+|..|.+. .+ .++.++|..+.
T Consensus 26 ~~iv-~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 26 QRIL-FLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred cEEE-EECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 4678 999999999999988762 13 38888888653
No 452
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=71.15 E-value=10 Score=26.24 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.2
Q ss_pred eEEEeCc-cHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 42 FPVSLGG-GSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 42 ~i~IvG~-G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
++ |+|+ |..|..++..|.+. +.+|.++=+.+.
T Consensus 1 I~-V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 IL-VFGATGFVGRALAKQLLRR-GHEVTALVRSPS 33 (183)
T ss_dssp EE-EETTTSHHHHHHHHHHHHT-TSEEEEEESSGG
T ss_pred eE-EECCCChHHHHHHHHHHHC-CCEEEEEecCch
Confidence 35 8897 99999999999985 688888877654
No 453
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=71.14 E-value=9.4 Score=29.53 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=31.8
Q ss_pred CCCccceEEEeCccHHHHHHHHHHHHhc----------CCeEEEEcCCCCC
Q psy4105 36 LVNWGDFPVSLGGGSAGAVVASRLSEVA----------HWSVLLLEAGPDE 76 (107)
Q Consensus 36 ~~~~~d~i~IvG~G~aG~~~A~~L~~~~----------~~~VlvIEag~~~ 76 (107)
......++ |||+|-.|+-++..|++.. +.++.|+|.....
T Consensus 8 ~~~~~~V~-vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 8 LSRPVSVV-LVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred HhCCCeEE-EEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 34557888 9999999999999999742 3489999887654
No 454
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=71.10 E-value=7.2 Score=32.97 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=27.7
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+. |||+|.-|..+|..+.. .++.|.+.|..+.
T Consensus 8 V~-VIGaG~MG~gIA~~la~-aG~~V~l~d~~~e 39 (503)
T TIGR02279 8 VA-VIGAGAMGAGIAQVAAS-AGHQVLLYDIRAE 39 (503)
T ss_pred EE-EECcCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 55 99999999999999987 5899999987643
No 455
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=71.03 E-value=8.2 Score=31.07 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=29.2
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
..++ |+|.|-.|+.+|..|+..+--++.++|....
T Consensus 136 ~~Vl-vvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v 170 (376)
T PRK08762 136 ARVL-LIGAGGLGSPAALYLAAAGVGTLGIVDHDVV 170 (376)
T ss_pred CcEE-EECCCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 4678 9999999999999999864457999988743
No 456
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=70.63 E-value=9.2 Score=29.23 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=28.4
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
++ |||+|..|+.++..|+..+--++.++|....+
T Consensus 2 Vl-vvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve 35 (234)
T cd01484 2 VL-LVGAGGIGCELLKNLALMGFGQIHVIDMDTID 35 (234)
T ss_pred EE-EECCCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 46 99999999999999998655678888887654
No 457
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=70.42 E-value=7.6 Score=34.39 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=31.0
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||+|.-|+.+|..|..-+-.++.++|.+..+
T Consensus 338 ~~kVL-IvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve 374 (664)
T TIGR01381 338 QLKVL-LLGAGTLGCNVARCLIGWGVRHITFVDNGKVS 374 (664)
T ss_pred cCeEE-EECCcHHHHHHHHHHHHcCCCeEEEEcCCEEC
Confidence 35678 99999999999999998655678999988755
No 458
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.35 E-value=6.6 Score=34.54 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=28.6
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.+. |||+|.-|.-+|..++. .++.|.++|....
T Consensus 315 ~v~-ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAA-VLGAGIMGGGIAYQSAS-KGVPVIMKDINQK 347 (715)
T ss_pred eEE-EECCchhHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 356 99999999999999887 5999999998754
No 459
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=69.97 E-value=9.8 Score=28.65 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=28.7
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
...++ |.|.|..|..+|..|.+.....|.+.|...
T Consensus 23 g~~va-IqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 23 GLTVA-VQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCEEE-EECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 35788 999999999999999986455677787754
No 460
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.85 E-value=7.2 Score=34.23 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=28.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.+. |||+|..|..+|..++...+..|.++|....
T Consensus 311 ~v~-ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 311 KVG-VLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred EEE-EECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 355 9999999999999988446999999998643
No 461
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.75 E-value=8.2 Score=31.94 Aligned_cols=33 Identities=15% Similarity=-0.014 Sum_probs=28.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |+|.|..|..+|..|.+ .+.+|.+.|....
T Consensus 10 ~v~-v~G~G~sG~~~~~~l~~-~g~~v~~~d~~~~ 42 (468)
T PRK04690 10 RVA-LWGWGREGRAAYRALRA-HLPAQALTLFCNA 42 (468)
T ss_pred EEE-EEccchhhHHHHHHHHH-cCCEEEEEcCCCc
Confidence 467 99999999999999997 5899999997643
No 462
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=69.67 E-value=9.5 Score=30.74 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=28.5
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
++ |||+|.-|+.+|..|...+--++.++|.+...
T Consensus 2 VL-IvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve 35 (307)
T cd01486 2 CL-LLGAGTLGCNVARNLLGWGVRHITFVDSGKVS 35 (307)
T ss_pred EE-EECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 46 99999999999999998655579999887654
No 463
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=69.63 E-value=7.5 Score=30.43 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=26.1
Q ss_pred ccceEEEeCccHHHHHHHHHHHHh----cC------CeEEEEcCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEV----AH------WSVLLLEAGP 74 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~----~~------~~VlvIEag~ 74 (107)
...++ ++|+|+||..+|..|.+. +- .++.++|..+
T Consensus 25 d~riv-~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 25 DQRIV-FFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp G-EEE-EEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred HcEEE-EeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 35678 999999999999998763 22 5788888865
No 464
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=69.39 E-value=6 Score=32.91 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=27.0
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |||+|..|+-+|..|++. ..+|.++..+.
T Consensus 206 ~Vv-VVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVV-VIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred EEE-EECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 467 999999999999999984 66888887754
No 465
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=69.21 E-value=7.9 Score=32.71 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=27.5
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+- |||+|.-|..+|..+.. .++.|.+.|....
T Consensus 10 V~-VIGaG~MG~gIA~~la~-aG~~V~l~D~~~e 41 (507)
T PRK08268 10 VA-VIGAGAMGAGIAQVAAQ-AGHTVLLYDARAG 41 (507)
T ss_pred EE-EECCCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 44 99999999999999987 5899999987653
No 466
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=68.97 E-value=9.8 Score=29.56 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=25.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag 73 (107)
.++ |+|+|-+|.++|..|.+. +. +|.|+...
T Consensus 128 ~vl-I~GAGGagrAia~~La~~-G~~~V~I~~R~ 159 (289)
T PRK12548 128 KLT-VIGAGGAATAIQVQCALD-GAKEITIFNIK 159 (289)
T ss_pred EEE-EECCcHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence 466 999999999999999885 55 48888765
No 467
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=68.93 E-value=7.4 Score=34.29 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=28.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.+. |||+|.-|.-+|..++. .+..|.++|....
T Consensus 315 ~v~-ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAA-VLGAGIMGGGIAYQSAS-KGTPIVMKDINQH 347 (714)
T ss_pred eEE-EECCchHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 355 99999999999999987 5999999997653
No 468
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.90 E-value=9.2 Score=31.74 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=27.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|.|..|..+|.++.. -+.+|.++|..+
T Consensus 197 ~Vv-ViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp 228 (406)
T TIGR00936 197 TVV-VAGYGWCGKGIAMRARG-MGARVIVTEVDP 228 (406)
T ss_pred EEE-EECCCHHHHHHHHHHhh-CcCEEEEEeCCh
Confidence 456 99999999999999987 478999998665
No 469
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=68.78 E-value=9.1 Score=30.00 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=27.4
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
-.++ |+|+|..|..++..|.+....+|.+++...
T Consensus 179 ~~V~-ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 179 KKVL-VIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred CEEE-EECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4577 999999999999999874456788887754
No 470
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=68.67 E-value=9.1 Score=31.82 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=26.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..+.+.....|.++|..+.
T Consensus 285 ~Vv-ViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 285 KVV-VIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred EEE-EECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 466 9999999999877766644567999987653
No 471
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=68.63 E-value=9.1 Score=31.64 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=27.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
+++ |||+|.+|.-+|..|.+. +.+|.++=..+.
T Consensus 177 rV~-VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~ 209 (443)
T COG2072 177 RVL-VIGAGASAVDIAPELAEV-GASVTLSQRSPP 209 (443)
T ss_pred eEE-EECCCccHHHHHHHHHhc-CCeeEEEecCCC
Confidence 567 999999999999999995 478877766554
No 472
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=68.62 E-value=8.2 Score=33.89 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=28.4
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
.+. |||+|.-|..+|..++...+..|.++|..+.
T Consensus 306 ~v~-ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 306 KVG-ILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred EEE-EECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 355 9999999999999887446899999998753
No 473
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=68.59 E-value=10 Score=29.80 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=28.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
-++ |+|.|.-|..+|..|.+ .++.|.+++.....
T Consensus 5 ~v~-IvG~GliG~s~a~~l~~-~g~~v~i~g~d~~~ 38 (279)
T COG0287 5 KVG-IVGLGLMGGSLARALKE-AGLVVRIIGRDRSA 38 (279)
T ss_pred EEE-EECCchHHHHHHHHHHH-cCCeEEEEeecCcH
Confidence 455 99999999999999998 58888888776543
No 474
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=68.59 E-value=9.6 Score=29.53 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=26.2
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
-.++ |+|+|-++.+++..|.+.+-.+|.|+.+.
T Consensus 126 k~vl-vlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGL-VIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEE-EEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3577 99999999999999998544568887653
No 475
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=68.40 E-value=15 Score=29.11 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=28.0
Q ss_pred CccceEEEeCc-cHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 38 NWGDFPVSLGG-GSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 38 ~~~d~i~IvG~-G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
....++ |.|+ |..|..++.+|.+. +..|..+...
T Consensus 20 ~~~~Il-VtGgtGfIG~~l~~~L~~~-G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRIC-ITGAGGFIASHIARRLKAE-GHYIIASDWK 54 (370)
T ss_pred CCCEEE-EECCccHHHHHHHHHHHhC-CCEEEEEEec
Confidence 445677 8888 99999999999984 7889888764
No 476
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.94 E-value=11 Score=29.94 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.0
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~ 74 (107)
..+. |||+|..|..+|..|....- ..+.|+|...
T Consensus 4 ~Ki~-IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 4 NKVT-VVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CEEE-EECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4667 99999999999999987433 3689998754
No 477
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.82 E-value=10 Score=31.04 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=27.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.+. |+|.|..|.++|..|.+ .+.+|.+.|...
T Consensus 16 ~i~-v~G~G~sG~a~a~~L~~-~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVA-VVGIGVSNIPLIKFLVK-LGAKVTAFDKKS 47 (458)
T ss_pred eEE-EEcccHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 466 99999999999988887 588999999764
No 478
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=67.78 E-value=12 Score=27.52 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=29.7
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..++ |+|.|.-|+-+|..|+..+-.++.++|.....
T Consensus 22 s~Vl-IiG~gglG~evak~La~~GVg~i~lvD~d~ve 57 (197)
T cd01492 22 ARIL-LIGLKGLGAEIAKNLVLSGIGSLTILDDRTVT 57 (197)
T ss_pred CcEE-EEcCCHHHHHHHHHHHHcCCCEEEEEECCccc
Confidence 5678 99999999999999998644578999887543
No 479
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=67.75 E-value=12 Score=28.69 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=30.3
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~ 75 (107)
....++ |+|+|.-+..+|..+.. -+++|.|+|..+.
T Consensus 99 p~~~L~-IfGaG~va~~la~la~~-lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVV-LFGAGHVGRALVRALAP-LPCRVTWVDSREA 134 (246)
T ss_pred CCCEEE-EECCcHHHHHHHHHHhc-CCCEEEEEeCCcc
Confidence 345777 99999999999888776 5899999998765
No 480
>PRK07326 short chain dehydrogenase; Provisional
Probab=67.71 E-value=10 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=24.6
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGG-GSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~-G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
-++ |+|+ |..|..++.+|.+ .+.+|.++...
T Consensus 8 ~il-ItGatg~iG~~la~~l~~-~g~~V~~~~r~ 39 (237)
T PRK07326 8 VAL-ITGGSKGIGFAIAEALLA-EGYKVAITARD 39 (237)
T ss_pred EEE-EECCCCcHHHHHHHHHHH-CCCEEEEeeCC
Confidence 356 7775 7889999999998 47889888654
No 481
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=67.68 E-value=11 Score=29.54 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=25.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |+|+|-++.+++..|.+..-.+|.|+.+.
T Consensus 129 ~vl-ilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 129 SVV-QVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred eEE-EECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 467 99999999999999998544578887653
No 482
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=67.55 E-value=11 Score=25.43 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=22.6
Q ss_pred eEEEeCccH-HHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 42 FPVSLGGGS-AGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 42 ~i~IvG~G~-aG~~~A~~L~~~~~~~VlvIEag 73 (107)
++ |+|++. .|..+|.+|.+....+|+++...
T Consensus 3 ~l-ItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 3 VL-ITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EE-EETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred EE-EECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 45 778654 59999999998645566666665
No 483
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=67.31 E-value=10 Score=30.00 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=27.3
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCC-eEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHW-SVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~-~VlvIEag~ 74 (107)
..+. |||+|..|..+|..|...+-. .++|+|...
T Consensus 7 ~ki~-iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 7 NKVV-LVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CEEE-EECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4677 999999999999999875333 699998744
No 484
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=67.18 E-value=9.4 Score=33.43 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCe-EEEEcCCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWS-VLLLEAGPD 75 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~-VlvIEag~~ 75 (107)
.++ |||+|..|+-+|..+.+. +.+ |.+++.+..
T Consensus 572 ~Vv-VIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 572 KVA-VVGGGNTAMDSARTAKRL-GAERVTIVYRRSE 605 (752)
T ss_pred cEE-EECCcHHHHHHHHHHHHc-CCCeEEEeeecCc
Confidence 577 999999999999988874 554 999988653
No 485
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.12 E-value=9.7 Score=30.13 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=25.3
Q ss_pred eEEEeCccHHHHHHHHHHHHhcC-CeEEEEcCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP 74 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~-~~VlvIEag~ 74 (107)
+. |||+|..|..+|+.|...+- ..+.|+|-..
T Consensus 2 i~-IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 2 LV-VIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred EE-EECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45 99999999999999987433 3688998743
No 486
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=67.08 E-value=12 Score=31.06 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=27.6
Q ss_pred EEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 44 ~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
+|||||.-|.+++..-.. -+.+|.++|..++.
T Consensus 5 gIlGGGQLgrMm~~aa~~-lG~~v~vLdp~~~~ 36 (375)
T COG0026 5 GILGGGQLGRMMALAAAR-LGIKVIVLDPDADA 36 (375)
T ss_pred EEEcCcHHHHHHHHHHHh-cCCEEEEecCCCCC
Confidence 599999999999998776 48999999987754
No 487
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=67.06 E-value=11 Score=30.57 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=30.6
Q ss_pred ccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 39 WGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 39 ~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
...++ |||+|..|+.+|..|+..+-.++.++|.....
T Consensus 41 ~~~Vl-iiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve 77 (370)
T PRK05600 41 NARVL-VIGAGGLGCPAMQSLASAGVGTITLIDDDTVD 77 (370)
T ss_pred CCcEE-EECCCHHHHHHHHHHHHcCCCEEEEEeCCEEc
Confidence 35678 99999999999999998644689999887544
No 488
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=66.92 E-value=9.2 Score=31.10 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.+. |+|+|+.|.++|.-|+++ +..|.+--..
T Consensus 3 kI~-ViGaGswGTALA~~la~n-g~~V~lw~r~ 33 (329)
T COG0240 3 KIA-VIGAGSWGTALAKVLARN-GHEVRLWGRD 33 (329)
T ss_pred eEE-EEcCChHHHHHHHHHHhc-CCeeEEEecC
Confidence 355 999999999999999985 5777776553
No 489
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=66.83 E-value=14 Score=26.54 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=25.6
Q ss_pred cceEEEeCc-cHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 40 GDFPVSLGG-GSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 40 ~d~i~IvG~-G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
-.++ |+|+ |..|..++..|.+. +.+|.++...
T Consensus 29 ~~vl-VlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 29 KTAV-VLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CEEE-EECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3577 8996 99999999999874 6788888654
No 490
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=66.72 E-value=12 Score=29.21 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=25.9
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |+|+|-++.+++..|.+..-.+|.|+.+.
T Consensus 124 ~vl-ilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 124 VVA-LRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred eEE-EECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 577 99999999999999998544568887664
No 491
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=66.56 E-value=13 Score=28.34 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=30.0
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
..++ |+|.|..|+.+|..|+..+--++.|+|.....
T Consensus 12 ~~Vl-VvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~ 47 (231)
T cd00755 12 AHVA-VVGLGGVGSWAAEALARSGVGKLTLIDFDVVC 47 (231)
T ss_pred CCEE-EECCCHHHHHHHHHHHHcCCCEEEEECCCEEC
Confidence 4677 99999999999999998655589999887644
No 492
>PLN02256 arogenate dehydrogenase
Probab=66.53 E-value=13 Score=29.37 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=27.7
Q ss_pred CccceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 38 NWGDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 38 ~~~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
....+. |||.|..|..+|..|.+ .+.+|.+++...
T Consensus 35 ~~~kI~-IIG~G~mG~slA~~L~~-~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIG-IVGFGNFGQFLAKTFVK-QGHTVLATSRSD 69 (304)
T ss_pred CCCEEE-EEeeCHHHHHHHHHHHh-CCCEEEEEECcc
Confidence 334677 99999999999999987 467888887653
No 493
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=66.53 E-value=12 Score=28.59 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=25.7
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAG 73 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag 73 (107)
.++ |+|+|.+|..++..|.+. +.+|.++...
T Consensus 119 ~vl-iiGaGg~g~aia~~L~~~-g~~v~v~~R~ 149 (270)
T TIGR00507 119 RVL-IIGAGGAARAVALPLLKA-DCNVIIANRT 149 (270)
T ss_pred EEE-EEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 466 999999999999999974 6788888654
No 494
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.36 E-value=12 Score=29.89 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=28.9
Q ss_pred eEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCCCC
Q psy4105 42 FPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGPDE 76 (107)
Q Consensus 42 ~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~~~ 76 (107)
++ |||+|.-|+-+|..|+..+-.++.|+|....+
T Consensus 2 Vl-IVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 2 VL-VVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred EE-EECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 46 99999999999999998655689999887654
No 495
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=66.17 E-value=10 Score=32.76 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=26.5
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |||+|..|+-+|..+.+....+|.+|+.+.
T Consensus 325 ~Vv-VIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 325 KVV-VIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred eEE-EECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 467 999999999999988874344699988765
No 496
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=66.07 E-value=12 Score=29.28 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=28.1
Q ss_pred cceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
-.++ |+|.|.+|..++..|... +.+|.+++...
T Consensus 153 ~kvl-ViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVL-VLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CEEE-EECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 4677 999999999999999874 77999987764
No 497
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=65.87 E-value=12 Score=31.27 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=27.3
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|.|..|..+|.++... +.+|.++|..+
T Consensus 214 ~Vl-ViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 214 VVV-VAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred EEE-EECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 466 999999999999999874 77999998754
No 498
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.86 E-value=14 Score=26.46 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=25.5
Q ss_pred ceEEEeCc-cHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGG-GSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~-G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|+ |..|..+|.+|.+. +.+|.++....
T Consensus 7 ~~l-ItG~~g~iG~~~a~~l~~~-G~~vi~~~r~~ 39 (253)
T PRK08217 7 VIV-ITGGAQGLGRAMAEYLAQK-GAKLALIDLNQ 39 (253)
T ss_pred EEE-EECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 466 8887 88899999999884 77888887643
No 499
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.68 E-value=11 Score=30.67 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.2
Q ss_pred cceEEEeCccHHHHHHHHHHHHhc------CCeEEEEcCCC
Q psy4105 40 GDFPVSLGGGSAGAVVASRLSEVA------HWSVLLLEAGP 74 (107)
Q Consensus 40 ~d~i~IvG~G~aG~~~A~~L~~~~------~~~VlvIEag~ 74 (107)
..+. |||+|..|.++|..|+++. +.+|.+-...+
T Consensus 12 ~ki~-ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 12 LKVS-VIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred CeEE-EECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 4577 9999999999999999853 15777764443
No 500
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=65.60 E-value=11 Score=29.88 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=24.2
Q ss_pred ceEEEeCccHHHHHHHHHHHHhcCCeEEEEcCCC
Q psy4105 41 DFPVSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74 (107)
Q Consensus 41 d~i~IvG~G~aG~~~A~~L~~~~~~~VlvIEag~ 74 (107)
.++ |+|+|+.|+.++..+...+-.+|.++|..+
T Consensus 171 ~V~-V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVV-VVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEE-EECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 477 999999999986655554446777776644
Done!