RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4105
(107 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 96.1 bits (240), Expect = 6e-25
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
GGG G VA++L+E VL++E G ++ + + P+ + + D Y T P
Sbjct: 31 GGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP 89
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 93.8 bits (234), Expect = 5e-24
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
GGG+AG VA RL+E + +VL++EAG ++ PS A L+ SK+DW YKT
Sbjct: 13 GGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTM 71
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 91.1 bits (227), Expect = 5e-23
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEPT 103
GGG G A+RL+E + SVL++E+G D + + + + S D Y+T
Sbjct: 26 GGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL 85
Query: 104 G 104
Sbjct: 86 A 86
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 87.2 bits (217), Expect = 9e-22
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV--TDVPSLAAWLQL-SKFDWQYKTEP 102
G G+AG VVA+RL+E SVL+LEAG + V + P LA L S FDW Y T
Sbjct: 9 GAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTA 67
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 84.9 bits (211), Expect = 5e-21
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEP 102
GGG++G +A+ LSE + VL+LE G +V + ++ + + KT
Sbjct: 33 GGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPV 86
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 74.1 bits (183), Expect = 4e-17
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQL--SKFDWQYKTEP 102
GGGSAG+++A+RLSE VLL+EAG + P AAW L +DW Y+TE
Sbjct: 24 GGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNP--AAWPALQGRSYDWDYRTEA 80
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 72.6 bits (179), Expect = 1e-16
Identities = 28/58 (48%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPS-LAAWLQLSKFDWQYKTEP 102
GGGSAGA VA+RLSE SV L+EAGP D + L S +DW Y EP
Sbjct: 20 GGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEP 77
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 60.3 bits (147), Expect = 3e-12
Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP-DENEVTDVPSLAAWLQ--LSKF-----DWQY 98
G G G + A RLSE VLLLE G + L+KF
Sbjct: 14 GAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESL 72
Query: 99 KTEP 102
T+
Sbjct: 73 FTDS 76
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 43.1 bits (101), Expect = 3e-06
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPD 75
G G AV A RL E A L+LE G
Sbjct: 12 GTGYGAAVSALRLGE-AGVQTLMLEMGQL 39
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 42.1 bits (98), Expect = 8e-06
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGK 105
G G G A L A + V + + G ++ + ++ K ++ G+
Sbjct: 53 GSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQ 110
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 40.1 bits (93), Expect = 3e-05
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAA--WLQLSKFDWQYKTEPTG 104
G G GAV A RL++ A ++E G + + + W
Sbjct: 18 GSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQP 76
Query: 105 KQ 106
Sbjct: 77 VS 78
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 34.5 bits (78), Expect = 0.004
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G G A RL+++ S +++++
Sbjct: 16 IGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 34.1 bits (77), Expect = 0.005
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G G A RL+E+ + + L E
Sbjct: 15 IGAGPTGLGAAVRLTELGYKNWHLYECND 43
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 32.8 bits (74), Expect = 0.012
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G G +A R++ VL+LE P
Sbjct: 13 VGSGFFGLTIAERVATQLDKRVLVLERRP 41
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 31.4 bits (71), Expect = 0.037
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP 74
G G AG L + +LE
Sbjct: 13 GAGPAGLAAGMYLEQAGFHDYTILERTD 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.089
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 14 KEILKPLTNGVCLKAYVP--IHSLLVN 38
K+ LK L LK Y +L +
Sbjct: 19 KQALKKLQAS--LKLYADDSAPALAIK 43
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 30.0 bits (67), Expect = 0.12
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G GAV A+ L + + VL++E
Sbjct: 7 VGSGLFGAVCANELKK-LNKKVLVIEKRN 34
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 29.8 bits (67), Expect = 0.14
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP 74
G G G A L + SVL+++AG
Sbjct: 30 GAGVVGLAAAYYLKVWSGGSVLVVDAGH 57
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 29.3 bits (65), Expect = 0.21
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G +GAV+ +L+E V +++
Sbjct: 9 VGAGFSGAVIGRQLAE-KGHQVHIIDQRD 36
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 29.3 bits (64), Expect = 0.22
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 46 LGGGSAGAVVASRLSEV--AHWSVLLLEAGPDENEVTD---VPSLAAWLQLSKFDWQ 97
+GGG+AG + AS L V L+E+G ++ + D +
Sbjct: 8 VGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDER 64
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 28.9 bits (64), Expect = 0.25
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G AG+V+A RL+ + VL+++ P
Sbjct: 35 VGAGFAGSVLAERLAS-SGQRVLIVDRRP 62
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 28.9 bits (64), Expect = 0.27
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 44 VSLGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
V +G GSAG A +S+ + V ++E
Sbjct: 43 VVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 73
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 28.0 bits (62), Expect = 0.66
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAG 73
GGG G+ +AS ++ VLLLE
Sbjct: 14 GGGPGGSTLASFVAM-RGHRVLLLERE 39
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 27.2 bits (61), Expect = 0.92
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPD 75
G G AGA LS V++LE
Sbjct: 16 GAGIAGASTGYWLSAHG--RVVVLEREAQ 42
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 27.4 bits (61), Expect = 0.99
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 46 LGGGSAGAVVASRLSE-VAHWSVLLLEAGPD 75
+GGG+ GA A + V L+E D
Sbjct: 8 VGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 26.7 bits (58), Expect = 1.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEA 72
+G G AG AS L + L+LEA
Sbjct: 14 IGAGIAGLKAASTLHQNGIQDCLVLEA 40
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 26.5 bits (58), Expect = 1.8
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAG 73
GGG AG+V L + V + E
Sbjct: 30 GGGPAGSVAGLTLHK-LGHDVTIYERS 55
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 26.2 bits (56), Expect = 2.2
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAG 73
G G AG A L+ A V L +
Sbjct: 9 GTGIAGLSAAQALTA-AGHQVHLFDKS 34
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 26.3 bits (57), Expect = 2.4
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 47 GGGSAGAVVASRLSEV-AHWSVLLLEAGP 74
G GS+G A +++ V ++E+
Sbjct: 72 GAGSSGLSAAYVIAKNRPDLKVCIIESSV 100
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 26.0 bits (57), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEA 72
G G +G A RLSE +L+LEA
Sbjct: 11 GAGMSGISAAKRLSEAGITDLLILEA 36
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 25.9 bits (55), Expect = 3.5
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 46 LGGGSAGAVVASRLSEV--AHWSVLLLE------AGPDENEVTDVPS-LAAWLQLSKFDW 96
+GGG+AG + AS L + + LL+ G E + ++ + +L + + +W
Sbjct: 31 VGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQTAFFDFLGIPEDEW 90
Query: 97 QYKTEPTGKQ 106
+ + K
Sbjct: 91 MRECNASYKV 100
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 25.3 bits (55), Expect = 3.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 43 PVSLGGGSAGAVVASRLSEVAHWSVLLLEA 72
PV L G S G+ +A+++S L L
Sbjct: 75 PVVLAGSSLGSYIAAQVSLQVPTRALFLMV 104
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 25.8 bits (55), Expect = 3.9
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 46 LGGGSAGAVVASRLSEVAH--WSVLLLE 71
+GGG+AG + AS L ++ L+E
Sbjct: 11 VGGGTAGWMAASYLVRALQQQANITLIE 38
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 25.4 bits (54), Expect = 4.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75
+GGG+AG + A L+ + +L P
Sbjct: 13 VGGGTAGWITAGLLAAEHNVDKGVLAHSPK 42
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 25.1 bits (55), Expect = 6.7
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 46 LGGGSAGAVVASRLSE 61
LGG A L
Sbjct: 7 LGGRFGALTAAYTLKR 22
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 24.7 bits (54), Expect = 7.7
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 46 LGGGSAGAVVASRLSE 61
+GGG G A L
Sbjct: 8 IGGGVGGIATAYNLRN 23
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 24.3 bits (53), Expect = 9.6
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 46 LGGGSAGAVVASRLSE 61
LG G+ G A + E
Sbjct: 10 LGAGTGGMPAAYEMKE 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.421
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,686,540
Number of extensions: 88993
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 42
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.1 bits)