RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4105
(107 letters)
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 83.0 bits (204), Expect = 9e-21
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEP 102
GGG G VA++L+E VL++E G ++ + + P+ + + D Y T P
Sbjct: 31 GGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP 89
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 78.8 bits (193), Expect = 3e-19
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP---DENEVTDVPSLAAWLQLSKFDWQYKTEPT 103
GGG G A+RL+E + SVL++E+G D + + + + S D Y+T
Sbjct: 24 GGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL 83
Query: 104 G 104
Sbjct: 84 A 84
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 74.5 bits (182), Expect = 8e-18
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEP 102
GGG++G +A+ LSE + VL+LE G +V + ++ + + KT
Sbjct: 33 GGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPV 86
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 68.1 bits (165), Expect = 2e-15
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGKQ 106
G G G A L A + V + + G ++ + ++ K ++ G+
Sbjct: 11 GSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQL 69
Query: 107 C 107
Sbjct: 70 M 70
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 60.0 bits (144), Expect = 1e-12
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLS--------KFDWQY 98
G G G + A RLSE A VLLLE G + T +A W S
Sbjct: 9 GAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESL 67
Query: 99 KTEP 102
T+
Sbjct: 68 FTDS 71
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 56.9 bits (136), Expect = 1e-11
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAA--WLQLSKFDWQYKTEP 102
G G GAV A RL++ A ++E G + + + W
Sbjct: 14 GSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTD 70
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 56.1 bits (134), Expect = 3e-11
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSL--AAWLQLSKFDWQYKTEPT 103
G G AV A RL E A L+LE G N+ ++ + W
Sbjct: 9 GTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEA 66
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 32.9 bits (73), Expect = 0.004
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
LG G +++ +S VL ++ P
Sbjct: 12 LGTGLTECILSGIMSV-NGKKVLHMDRNP 39
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 31.7 bits (71), Expect = 0.009
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G GAV A+ L + + VL++E
Sbjct: 7 VGSGLFGAVCANELKK-LNKKVLVIEKRN 34
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 31.3 bits (70), Expect = 0.014
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G +GAV+ +L+E V +++
Sbjct: 8 VGAGFSGAVIGRQLAE-KGHQVHIIDQRD 35
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4
{Thale cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 31.4 bits (70), Expect = 0.015
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP 74
G GSAG A +S+ + V ++E
Sbjct: 40 GAGSAGLSAAYEISKNPNVQVAIIEQSV 67
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 297
Score = 31.3 bits (69), Expect = 0.017
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
LG G +++ LS VL ++
Sbjct: 11 LGTGITECILSGLLSV-DGKKVLHIDKQD 38
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 30.5 bits (67), Expect = 0.026
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP 74
GGG G+ +A L++ + + L E+G
Sbjct: 11 GGGIIGSAIAYYLAK-ENKNTALFESGT 37
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 29.7 bits (65), Expect = 0.055
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP 74
G GS G +L++ LL++A
Sbjct: 10 GAGSMGMAAGYQLAK-QGVKTLLVDAFD 36
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea
mays) [TaxId: 4577]}
Length = 347
Score = 29.5 bits (64), Expect = 0.073
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G +G A RLSE +L+LEA
Sbjct: 6 VGAGMSGISAAKRLSEAGITDLLILEATD 34
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase
{Arthrobacter globiformis [TaxId: 1665]}
Length = 305
Score = 28.6 bits (62), Expect = 0.12
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP 74
G G G +A L ++ +L+ GP
Sbjct: 8 GAGIVGTNLADELVTRGWNNITVLDQGP 35
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 28.1 bits (61), Expect = 0.17
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+GGGS G A R + + V L+E
Sbjct: 7 IGGGSGGMAAARRAAR-HNAKVALVEKSR 34
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 28.1 bits (61), Expect = 0.20
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVT 80
+G GS G A + + V +++
Sbjct: 9 IGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPF 43
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 28.1 bits (61), Expect = 0.21
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGP 74
G G AG A ++ + V+L+E P
Sbjct: 23 GSGGAGFSAAISATD-SGAKVILIEKEP 49
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 27.7 bits (60), Expect = 0.22
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPD 75
GGG +G + A +E +VLLL+ G
Sbjct: 9 GGGPSGLMAAIGAAE-EGANVLLLDKGNK 36
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 27.6 bits (60), Expect = 0.30
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+GGGS G +R + L+EA
Sbjct: 8 IGGGSGGIASINRAAM-YGQKCALIEAKE 35
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 27.5 bits (60), Expect = 0.30
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPD 75
G G+AG A++L++ SV + + G
Sbjct: 11 GAGAAGLFCAAQLAK-LGKSVTVFDNGKK 38
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide
dehydrogenase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 233
Score = 27.2 bits (59), Expect = 0.37
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+GGG AG V A + ++ ++ +E
Sbjct: 11 IGGGPAGYVAAIKAAQ-LGFNTACVEKRG 38
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 380
Score = 27.1 bits (59), Expect = 0.40
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 47 GGGSAGAVVASRLSEVAH-----WSVLLLEAGP 74
G G AG A+RL ++A V L+E
Sbjct: 39 GAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 71
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 288
Score = 27.0 bits (58), Expect = 0.40
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 47 GGGSAGAVVASRLSEVAHWSVLLLEAGPDENEV 79
G G G A L + V LLE+ + +
Sbjct: 8 GAGIGGLSCALALHQAGIGKVTLLESSSEIRPL 40
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 27.0 bits (58), Expect = 0.48
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTD 81
+GGGS G A ++ V++L+ T+
Sbjct: 9 IGGGSGGLAAAKEAAK-FDKKVMVLDFVTPTPLGTN 43
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide
dehydrogenase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 223
Score = 26.7 bits (58), Expect = 0.54
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+G G G V A R ++ V ++E G
Sbjct: 9 VGAGPGGYVAAIRAAQ-LGQKVTIVEKGN 36
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide
dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 26.5 bits (57), Expect = 0.56
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75
+G G G V A + ++ L+E
Sbjct: 9 IGAGPGGYVAAIKSAQ-LGLKTALIEKYKG 37
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 26.5 bits (57), Expect = 0.64
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+GGG G V A R + +L+E
Sbjct: 11 IGGGPGGYVAAIRAGQ-LGIPTVLVEGQA 38
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 26.5 bits (57), Expect = 0.65
Identities = 5/62 (8%), Positives = 14/62 (22%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGK 105
+G GS G + + V +++ + + +
Sbjct: 9 IGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANY 68
Query: 106 QC 107
Sbjct: 69 MD 70
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase,
N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}
Length = 268
Score = 26.5 bits (57), Expect = 0.70
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFDWQYKTEPTGK 105
LG G G A L+ +SV +L DV S + +W T
Sbjct: 12 LGSGVIGLSSALILAR-KGYSVHILARDL----PEDVSSQTFASPWAGANWTPFMTLTDG 66
Query: 106 QC 107
Sbjct: 67 PR 68
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide
dehydrogenase {Garden pea (Pisum sativum) [TaxId:
3888]}
Length = 221
Score = 26.3 bits (57), Expect = 0.73
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+GGG G V A + ++ + +E
Sbjct: 9 IGGGPGGYVAAIKAAQ-LGFKTTCIEKRG 36
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II,
mitochondrial [TaxId: 9606]}
Length = 306
Score = 26.4 bits (57), Expect = 0.79
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 6 ADEIDPKGKEILKPLTNGVCLKAYVPIHSLLVNWGDFPVSLGGGSAGAVVASR--LSEVA 63
+ D I+ P + G+ + + S V+ G V+LGG + A+
Sbjct: 53 VPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARHCP 112
Query: 64 HWSVLLLEAGPDENEVTDVPS 84
V+ ++A D N S
Sbjct: 113 DLCVVWVDAHADINTPLTTSS 133
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 26.0 bits (56), Expect = 0.81
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
+GGGS G A R +E ++E+
Sbjct: 9 IGGGSGGLASARRAAE-LGARAAVVESHK 36
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter
sp., py2 [TaxId: 35809]}
Length = 261
Score = 26.1 bits (56), Expect = 0.98
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGPD 75
+GGG+AG ++ L L+++ P
Sbjct: 48 IGGGAAGRFGSAYLRA-MGGRQLIVDRWPF 76
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 25.3 bits (54), Expect = 1.5
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAGP 74
LGGG G A ++ V ++E
Sbjct: 12 LGGGPGGYSAAFAAAD-EGLKVAIVERYK 39
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 356
Score = 25.3 bits (54), Expect = 1.6
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 46 LGGGSAG---AVVASRLSEVAHWSVLLLEAGP 74
+GGG +G A A+ +++ V L+E
Sbjct: 27 IGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 24.8 bits (53), Expect = 2.6
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 46 LGGGSAGAVVASRLSEVAHWSVLLLEAG 73
+G G G A + E + SVL
Sbjct: 6 IGAGVIGLSTALCIHE-RYHSVLQPLDV 32
>d2ccya_ a.24.3.2 (A:) Cytochrome c' {Rhodospirillum molischianum
[TaxId: 1083]}
Length = 127
Score = 23.4 bits (50), Expect = 5.2
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 53 AVVASRLSEVAHWSVLLLEAGPDENEVTDVPSLAAWLQLSKFD 95
A A ++ VA + + G + + A + ++F
Sbjct: 40 AQRAENMAMVAKLAPIGWAKGTEALPNGETKPEAFGSKSAEFL 82
>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide
dehydrogenase {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 233
Score = 23.5 bits (49), Expect = 6.6
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 46 LGGGSAGAVVASRLSEVAH--WSVLLLEAGP 74
LGGG AG A + V +++
Sbjct: 7 LGGGPAGYEAALVAATSHPETTQVTVIDCDG 37
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 23.2 bits (48), Expect = 8.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 44 VSLGGGSAGAVVASRLSEVAH-WSVLLLEAGP 74
V +GGG+ GA A + V L+E
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.421
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 413,946
Number of extensions: 16327
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 42
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)