BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4106
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/188 (40%), Positives = 117/188 (62%), Gaps = 21/188 (11%)
Query: 17 PGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGY 76
PGWSY +V PFF KSEDN +E D + + YH KGG L + + PY P+++A +++G + G+
Sbjct: 175 PGWSYQDVLPFFKKSEDN-LELDAVGTEYHAKGGLLPVGKFPYNPPLSYALLKAGEEMGF 233
Query: 77 PIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D+NG TGF +++ RNG R+S++RAFL P R R N
Sbjct: 234 SVQDLNGQNSTGFMI-------------------AQMTARNGIRYSSARAFLRPARMRNN 274
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIR-VFARKEVVLSAGAINSPQILMVSGI 195
LH+ + VTK++I +K VGVE+ +R + +KEV++S GA+NSPQIL++SG+
Sbjct: 275 LHILLNTTVTKVLIHPGTKNVVGVEVSDQFGSMRKILVKKEVIVSGGAVNSPQILLLSGV 334
Query: 196 GPREHLRE 203
GP+E L++
Sbjct: 335 GPKEDLQK 342
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 117/188 (62%), Gaps = 21/188 (11%)
Query: 17 PGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGY 76
PGW+Y++V PFF KSEDN ++ D + + YH KGG L + + PY P+++A +++G + G+
Sbjct: 175 PGWAYNDVLPFFKKSEDN-LDLDEVGTEYHAKGGLLPVGKFPYNPPLSYAILKAGEELGF 233
Query: 77 PIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D+NG TGF +++ RNG R+S++RAFL P R R N
Sbjct: 234 SVHDLNGQNSTGFMI-------------------AQMTARNGIRYSSARAFLRPARMRNN 274
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKG-NSKIRVFARKEVVLSAGAINSPQILMVSGI 195
LH+ + TK++I +K +GVE+ S ++ +KEVVLSAGA+NSP IL++SG+
Sbjct: 275 LHILLNTTATKILIHPHTKNVLGVEVSDQFGSTRKILVKKEVVLSAGAVNSPHILLLSGV 334
Query: 196 GPREHLRE 203
GP++ L++
Sbjct: 335 GPKDELQQ 342
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 103/187 (55%), Gaps = 26/187 (13%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW Y P+F K++ +++ + +Y G L ++ P+ AF+Q+ Q+GYP
Sbjct: 159 GWDYAHCLPYFRKAQRHELGAN----MYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYP 214
Query: 78 IV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF ++ ++++ G RWST+ A+LHP+ R N
Sbjct: 215 FTEDMNGFQQEGFGWM-------------------DMTVHQGKRWSTACAYLHPVLSRPN 255
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L +LV++++ + RAVGVE +K + + + +EV+LS GAINSPQ+LM+SG+G
Sbjct: 256 LRAEVQTLVSRVLFE--GTRAVGVEYIKDGQRHKAYVSREVILSGGAINSPQLLMLSGVG 313
Query: 197 PREHLRE 203
+ LR+
Sbjct: 314 NADDLRK 320
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 26/187 (13%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW Y P+F K++ +++ S Y G L ++ P+ AF+++ Q+GYP
Sbjct: 157 GWDYAHCLPYFRKAQGHELGA----SRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYP 212
Query: 78 IV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D+NG Q GF ++ ++++ G RWS + A+LHP R N
Sbjct: 213 LTEDMNGFQQEGFGWM-------------------DMTIHEGKRWSAACAYLHPALSRTN 253
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L +LV++++ + RAVGVE +K R +A KEV+LS GAINSPQ+LM+SGIG
Sbjct: 254 LKAEAETLVSRVLFE--GTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIG 311
Query: 197 PREHLRE 203
+ L++
Sbjct: 312 NADDLKK 318
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E++Q + + G L + P+ HAFV++G+Q+G+
Sbjct: 112 GWAYADVLPYFKRMENSQGGQEG----WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFE 167
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG Q GF +E ++ NG RWS + A+L P +R N
Sbjct: 168 VTDDYNGEKQEGFG-------------------PMEQTIHNGRRWSAANAYLKPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + K K++++ KRAVGVE+ G + + AR+EV+++A +INSP++LM+SGIG
Sbjct: 209 VKLVK-GFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL+E
Sbjct: 266 PAAHLKE 272
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E++Q + + G L + P+ HAFV++G+Q+G+
Sbjct: 112 GWAYADVLPYFKRMENSQGGQEG----WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFE 167
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG Q GF +E ++ NG RWS + A+L P +R N
Sbjct: 168 VTDDYNGEKQEGFG-------------------PMEQTIHNGRRWSAANAYLKPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + K K++++ KRAVGVE+ G + + AR+EV+++A +INSP++LM+SGIG
Sbjct: 209 VKLVK-GFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL+E
Sbjct: 266 PAAHLKE 272
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E++Q + + G L + P+ HAFV++G+Q+G+
Sbjct: 112 GWAYADVLPYFKRMENSQGGQEG----WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFE 167
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG Q GF +E ++ NG RWS + A+L P +R N
Sbjct: 168 VTDDYNGEKQEGFG-------------------PMEQTIHNGRRWSAANAYLKPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + K K++++ KRAVGVE+ G + + AR+EV+++A +INSP++LM+SGIG
Sbjct: 209 VKLVK-GFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL+E
Sbjct: 266 PAAHLKE 272
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E++Q + + G L + P+ HAFV++G+Q+G+
Sbjct: 112 GWAYADVLPYFKRMENSQGGQEG----WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFE 167
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG Q GF +E ++ NG RWS + A+L P +R N
Sbjct: 168 VTDDYNGEKQEGFG-------------------PMEQTIHNGRRWSAANAYLKPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + K K++++ KRAVGVE+ G + + AR+EV+++A +INSP++LM+SGIG
Sbjct: 209 VKLVK-GFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL+E
Sbjct: 266 PAAHLKE 272
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E++Q + + G L + P+ HAFV++G+Q+G+
Sbjct: 112 GWAYADVLPYFKRMENSQGGQEG----WRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFE 167
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG Q GF +E ++ NG RWS + A+L P +R N
Sbjct: 168 VADDYNGEKQEGFG-------------------PMEQTIHNGRRWSAANAYLKPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + K K++++ KRAVGVE+ G + + AR+EV+++A +INSP++LM+SGIG
Sbjct: 209 VKLVK-GFARKIVLE--GKRAVGVEIEAGRTFSTIRARREVIIAASSINSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL+E
Sbjct: 266 PAAHLKE 272
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 104/187 (55%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW + +V P+F + EDN D + + GG L + K P+ AFV++G Q+G+
Sbjct: 113 GWGFADVLPYFKRMEDN----DGGEDGWRGHGGPLHVQRGSRKNPLYGAFVEAGRQAGFE 168
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG+ Q GF +E ++ G RWS + A+L P +R+N
Sbjct: 169 LTDDYNGSKQEGFG-------------------PMEQTISGGRRWSAASAYLKPALKRKN 209
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + K ++II+ ++RA+GVE+ V AR+EV+++A +INSP+ILM+SGIG
Sbjct: 210 VSLVK-GFARRVIIE--NQRAIGVEIEAHKQIQVVKARREVIVAASSINSPKILMLSGIG 266
Query: 197 PREHLRE 203
P EHLRE
Sbjct: 267 PAEHLRE 273
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 103/187 (55%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E++ + + G L I P+ HAFV++G+++G+
Sbjct: 112 GWAYADVLPYFKRMENSSGGQEG----WRGTNGPLYIQRGKRDNPLFHAFVEAGHEAGFE 167
Query: 78 IV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG Q GF +E ++ NG RWS + A+L P +R N
Sbjct: 168 VTEDYNGEKQEGFG-------------------PMEQTIHNGRRWSAANAYLKPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + K L K++++ KRAVGVE+ G S + AR+EV+++A +INSP++LM+SGIG
Sbjct: 209 VKLVK-GLARKIVLE--GKRAVGVEIEAGRSFSTIRARREVIIAASSINSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P L+E
Sbjct: 266 PAAQLKE 272
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 26/187 (13%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW Y P+F K++ +++ + +Y G L ++ P+ AF+Q+ Q+GYP
Sbjct: 162 GWDYAHCLPYFRKAQKHELGAN----MYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYP 217
Query: 78 IV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF ++ ++++ G RWST+ A+L P R N
Sbjct: 218 FTEDMNGFQQEGFGWM-------------------DMTIHQGKRWSTASAYLRPALSRPN 258
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L +LV++++ + RAVGVE +K + + +EV+LS GAINSPQ+LM+SG+G
Sbjct: 259 LRAEVQTLVSRVLFE--GTRAVGVEYIKDGQSHKAYVSREVILSGGAINSPQLLMLSGVG 316
Query: 197 PREHLRE 203
+ L++
Sbjct: 317 NADDLKK 323
>sp|A5WA97|BETA_PSEP1 Choline dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=betA PE=3 SV=1
Length = 565
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 31/197 (15%)
Query: 12 AYVEGPG---WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTI-TEIPYKTPIAHAF 67
+ E PG W+Y + P+F K+E I ++ YH G +++ T P+ HA
Sbjct: 108 GWAELPGLEDWTYLDCLPYFRKAETRDIGPND----YHGGDGPVSVATPKAGNNPLFHAM 163
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
V++G Q+GYP D+NG Q GF + S +NG R ST+R
Sbjct: 164 VEAGVQAGYPRTEDLNGYQQEGFGPMDRSVT------------------KNGRRSSTARG 205
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFAR--KEVVLSAGAI 184
+L ++R NL + +L +++ D KRAVGV + G+S+ RV AR KEV++S+GAI
Sbjct: 206 YLDQAKKRPNLTIVTHALTDRVLFD--GKRAVGVTYLVGDSEERVEARARKEVIVSSGAI 263
Query: 185 NSPQILMVSGIGPREHL 201
SPQ+L SG+GPR L
Sbjct: 264 ASPQLLQRSGVGPRALL 280
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E + D + G L + P K P+ HAFV++G Q+G+
Sbjct: 112 GWAYADVLPYFKRMEHSHGGEDG----WRGTDGPLHVQRGPVKNPLFHAFVEAGKQAGFE 167
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG+ Q GF + E + G RWS + A+L P +R N
Sbjct: 168 MTDDYNGSKQEGFGLM-------------------EQTTWRGRRWSAASAYLKPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + + K++I+ + RA GVE+ +G V A +EV++SA + NSP++LM+SGIG
Sbjct: 209 VQLIR-CFARKIVIE--NGRATGVEIERGGRIEVVKANREVIVSASSFNSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL++
Sbjct: 266 PAAHLKD 272
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 26/188 (13%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GWS+ +V+ +FI+SE N + +H G L ++ + P + AFVQS + G P
Sbjct: 113 GWSFRDVQKYFIRSEGNAV----FSGTWHGTNGPLGVSNLAEPNPTSRAFVQSCQEMGLP 168
Query: 78 I-VDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D NGA+Q G ++++RN R ST+ +L P R+N
Sbjct: 169 YNPDFNGASQEGAGIY-------------------QMTIRNNRRCSTAVGYLRPALGRKN 209
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L V +LV K++ + RA GV+ + + A +E+V++AGAI +P+++M+SG+G
Sbjct: 210 LTVVTRALVLKIVFN--GTRATGVQYIANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVG 267
Query: 197 PREHLREK 204
P HLRE
Sbjct: 268 PAAHLREN 275
>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA
PE=3 SV=1
Length = 565
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 31/197 (15%)
Query: 12 AYVEGPG---WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTI-TEIPYKTPIAHAF 67
+ E PG W+Y + P+F K+E I ++ YH G +++ T P+ HA
Sbjct: 108 GWAELPGLQDWTYLDCLPYFRKAETRDIGPND----YHGGEGPVSVATPKAGNNPLFHAM 163
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
V++G Q+GYP D+NG Q GF + S +NG R ST+R
Sbjct: 164 VEAGVQAGYPRTEDLNGYQQEGFGPMDRSVT------------------KNGRRSSTARG 205
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFAR--KEVVLSAGAI 184
+L ++R NL + +L +++ D KRAVGV + G+S+ RV AR KEV++S+GAI
Sbjct: 206 YLDQAKKRPNLTIVTHALSDRVLFD--GKRAVGVTYLVGDSEERVEARARKEVIVSSGAI 263
Query: 185 NSPQILMVSGIGPREHL 201
SPQ+L SG+GPR L
Sbjct: 264 ASPQLLQRSGVGPRALL 280
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E + + + G L + P P+ HAF+Q+G Q+G+
Sbjct: 112 GWAYADVLPYFKRMEHSHGGEEG----WRGTDGPLHVQRGPVSNPLFHAFIQAGAQAGFE 167
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG+ Q GF + E ++ NG RWS + A+L P +R N
Sbjct: 168 LTDDYNGSKQEGFGLM-------------------EQTIHNGRRWSAANAYLKPALKRGN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + K+II+ + RAVGVE+ + V A +EV++SA + NSP++LM+SGIG
Sbjct: 209 VTLVN-GFARKVIIE--NGRAVGVEIERRGRVETVKANREVIVSASSFNSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL++
Sbjct: 266 PAAHLKD 272
>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA
PE=3 SV=1
Length = 565
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 31/197 (15%)
Query: 12 AYVEGPG---WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPY-KTPIAHAF 67
+ E PG W+Y + P+F K+E I ++ YH G +++T P+ HA
Sbjct: 108 GWAELPGLEDWTYLDCLPYFRKAETRDIGPND----YHGGEGPVSVTTPKAGNNPLFHAM 163
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
V++G Q+GYP D+NG Q GF + + +NG R ST+R
Sbjct: 164 VEAGVQAGYPRTEDLNGYQQEGFGPMDRTVT------------------KNGRRSSTARG 205
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFAR--KEVVLSAGAI 184
+L ++R NL + +L +++ D KRA+GV + G+S+ RV AR KEV++S+GAI
Sbjct: 206 YLDQAKKRPNLTIVTHALTDRVLFD--GKRAIGVTYLVGDSEERVEARARKEVIVSSGAI 263
Query: 185 NSPQILMVSGIGPREHL 201
SPQ+L SG+GPR L
Sbjct: 264 ASPQLLQRSGVGPRALL 280
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P++ + E + + + G L + P K P+ HAF+++G Q+G+
Sbjct: 112 GWAYADVLPYYKRMEHSHGGEEG----WRGTDGPLHVQRGPVKNPLFHAFIEAGKQAGFE 167
Query: 78 IV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG+ Q GF + E + G RWS + A+L P +R N
Sbjct: 168 VTEDYNGSKQEGFGLM-------------------EQTTWRGRRWSAASAYLRPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + + K++I+ + RA GVE+ +G V A +EV++SA + NSP++LM+SGIG
Sbjct: 209 VELVR-CFARKIVIE--NGRATGVEIERGGRTEVVRANREVIVSASSFNSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL+E
Sbjct: 266 PAAHLQE 272
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E + + + G L + + P+ AFV++G Q+G+
Sbjct: 112 GWAYADVLPYFKRMEHSHGGEEG----WRGTDGPLHVQRGGFTNPLFRAFVEAGKQAGFE 167
Query: 78 IV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D NG+ Q GF + E ++ +G RWS + A+L P +R+N
Sbjct: 168 TTEDYNGSKQEGFGLM-------------------EQTIFSGRRWSAANAYLKPALKRKN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + + +++I++ RA GVE+ +G V A +EV++SA + NSP++LM+SGIG
Sbjct: 209 VEII-YGFAQRIVIEDG--RATGVEIERGGKIEVVKANREVIVSASSFNSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P EHL+E
Sbjct: 266 PGEHLKE 272
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 31/197 (15%)
Query: 12 AYVEGPG---WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTI-TEIPYKTPIAHAF 67
+ E PG W+Y + P+F K+E I ++ YH G +++ T P+ HA
Sbjct: 108 GWAELPGLEDWTYLDCLPYFRKAETRDIGPND----YHGGEGPVSVATPKAGNNPLFHAM 163
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
V++G Q+GYP D+NG Q GF + S + G R ST+R
Sbjct: 164 VEAGVQAGYPRTEDLNGYQQEGFGPMDRSVT------------------KKGRRSSTARG 205
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFAR--KEVVLSAGAI 184
+L ++R NL + +L +++ D KRAVGV + G+S+ RV AR KEV++S+GAI
Sbjct: 206 YLDQAKKRPNLTIVTHALSDRVLFD--GKRAVGVTYLVGDSEERVEARARKEVIVSSGAI 263
Query: 185 NSPQILMVSGIGPREHL 201
SPQ+L SG+GPR L
Sbjct: 264 ASPQLLQRSGVGPRALL 280
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 26/186 (13%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPY-KTPIAHAFVQSGYQSGYP 77
WSY + P+F K+E + ++ YH G +++T + HA V++G Q+GYP
Sbjct: 116 WSYLDCLPYFRKAETRDVGAND----YHGASGPVSVTTPKMGNNELFHAMVEAGVQAGYP 171
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + + G R ST+R +L + R+N
Sbjct: 172 RTDDLNGYQQEGFGPMDRTVTP------------------KGRRASTARGYLDQAKSRKN 213
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L + +L +++ D KRAVGV KG S AR+EV+L AGAI SPQIL SG+G
Sbjct: 214 LTIVTHALTDRILFD--GKRAVGVAYFKGESAQTAKARREVLLCAGAIASPQILQRSGVG 271
Query: 197 PREHLR 202
P++ L+
Sbjct: 272 PKDLLQ 277
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P++ + E + + + G L + P K P+ HAF+++G ++G+
Sbjct: 112 GWAYADVLPYYKRMEHSHGGEEG----WRGTDGPLHVQRGPVKNPLFHAFIEAGKEAGFE 167
Query: 78 IV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
+ D NG+ Q GF + E + G RWS + A+L P +R N
Sbjct: 168 VTEDYNGSKQEGFGLM-------------------EQTTWRGRRWSAASAYLRPALKRPN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + + K++I+ + RA GVE+ +G V A +EV++SA + NSP++LM+SGIG
Sbjct: 209 VELIR-CFARKIVIE--NGRATGVEIERGGRIEVVKANREVIVSASSFNSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P HL+E
Sbjct: 266 PAAHLKE 272
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 102/199 (51%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLT-ITEIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G ++ IT P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVITSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + +G R STSR
Sbjct: 162 IEAGMQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------HGRRASTSRG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 100 bits (249), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAFVQSGYQSGYP 77
W+Y + P+F K+E + ++ YH G +++T P P+ A V++G Q+GYP
Sbjct: 119 WTYLDCLPYFRKAETRDVGPND----YHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYP 174
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + R V R G R ST+R +L R R N
Sbjct: 175 RTDDLNGYQQEGFGPM------DRTVTPR------------GRRASTARGYLDQARARPN 216
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L + +L +++ KRA GV + G++++ AR+EV++ +GAI SPQ+L SG+G
Sbjct: 217 LEIVTHALADRILF--SGKRATGVTFLHGSARVTAHARREVLVCSGAIASPQLLQRSGVG 274
Query: 197 PREHLRE 203
P E LRE
Sbjct: 275 PGEWLRE 281
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAFVQSGYQSGYP 77
W+Y + P+F K+E + ++ YH G +++T P P+ A V++G Q+GYP
Sbjct: 119 WAYLDCLPYFRKAETRDVGPND----YHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYP 174
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + R V R G R ST+R +L R R N
Sbjct: 175 RTDDLNGYQQEGFGPM------DRTVTPR------------GRRASTARGYLDQARARPN 216
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L + +L +++ KRA GV + G++++ AR+EV++ +GAI SPQ+L SG+G
Sbjct: 217 LEIVTHALADRILF--SGKRATGVTFLHGSARVTAHARREVLVCSGAIASPQLLQRSGVG 274
Query: 197 PREHLRE 203
P E LRE
Sbjct: 275 PGEWLRE 281
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAFVQSGYQSGYP 77
W+Y + P+F K+E + ++ YH G +++T P P+ A V++G Q+GYP
Sbjct: 119 WAYLDCLPYFRKAETRDVGPND----YHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYP 174
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + R V R G R ST+R +L R R N
Sbjct: 175 RTDDLNGYQQEGFGPM------DRTVTPR------------GRRASTARGYLDQARARPN 216
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L + +L +++ KRA GV + G++++ AR+EV++ +GAI SPQ+L SG+G
Sbjct: 217 LEIVTHALADRILF--SGKRATGVTFLHGSARVTAHARREVLVCSGAIASPQLLQRSGVG 274
Query: 197 PREHLRE 203
P E LRE
Sbjct: 275 PGEWLRE 281
>sp|Q63KK7|BETA_BURPS Choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243)
GN=betA PE=3 SV=1
Length = 565
Score = 100 bits (248), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAFVQSGYQSGYP 77
W+Y + P+F K+E + ++ YH G +++T P P+ A V++G Q+GYP
Sbjct: 119 WAYLDCLPYFRKAETRDVGPND----YHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYP 174
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + R V R G R ST+R +L R R N
Sbjct: 175 RTDDLNGYQQEGFGPM------DRTVTPR------------GRRASTARGYLDQARARPN 216
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L + +L +++ KRA GV + G++++ AR+EV++ +GAI SPQ+L SG+G
Sbjct: 217 LEIVTHALADRILF--SGKRATGVTFLHGSARVTAHARREVLVCSGAIASPQLLQRSGVG 274
Query: 197 PREHLRE 203
P E LRE
Sbjct: 275 PGEWLRE 281
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 102/199 (51%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLT-ITEIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G ++ IT P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVITSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + +G R ST+R
Sbjct: 162 IEAGMQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------HGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 97/186 (52%), Gaps = 26/186 (13%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTI-TEIPYKTPIAHAFVQSGYQSGYP 77
WSY + P+F K+E + +++ YH G +++ T + HA V++G Q+GYP
Sbjct: 116 WSYLDCLPYFRKAETRDVGSND----YHGATGPVSVATPKMGNNELFHAMVEAGVQAGYP 171
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + + G R ST+R +L + R+N
Sbjct: 172 RTDDLNGYQQEGFGPMDRTVTP------------------KGRRASTARGYLDQAKGRKN 213
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L + +L K++ + KRAVGV KG S V AR+EV+L AGAI SPQIL SG+G
Sbjct: 214 LTIVTHALTDKILFE--GKRAVGVAYFKGESPQTVQARREVLLCAGAIASPQILQRSGVG 271
Query: 197 PREHLR 202
P++ L+
Sbjct: 272 PKDLLQ 277
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + +G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------HGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGSAELLAE 280
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 97/190 (51%), Gaps = 30/190 (15%)
Query: 19 WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAFVQSGYQSGY 76
WSY + P++ K+E + END YH G +++T P P+ A +++G Q+GY
Sbjct: 116 WSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGY 170
Query: 77 P-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRR 135
P D+NG Q GF + + G R ST+R +L + R
Sbjct: 171 PRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARGYLDQAKSRP 212
Query: 136 NLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAINSPQILMVS 193
NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI SPQIL S
Sbjct: 213 NLTIRTHAMTDHIIFD--CKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRS 270
Query: 194 GIGPREHLRE 203
G+G E L E
Sbjct: 271 GVGNAELLAE 280
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 97/190 (51%), Gaps = 30/190 (15%)
Query: 19 WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAFVQSGYQSGY 76
WSY + P++ K+E + END YH G +++T P P+ A +++G Q+GY
Sbjct: 116 WSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGY 170
Query: 77 P-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRR 135
P D+NG Q GF + + G R ST+R +L + R
Sbjct: 171 PRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARGYLDQAKSRP 212
Query: 136 NLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAINSPQILMVS 193
NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI SPQIL S
Sbjct: 213 NLTIRTHAMTDHIIFD--CKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRS 270
Query: 194 GIGPREHLRE 203
G+G E L E
Sbjct: 271 GVGNAELLAE 280
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 30/190 (15%)
Query: 19 WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAFVQSGYQSGY 76
WSY + P++ K+E + END YH G +++T P P+ A +++G Q+GY
Sbjct: 116 WSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAMIEAGMQAGY 170
Query: 77 P-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRR 135
P D+NG Q GF + + +G R ST+R +L + R
Sbjct: 171 PRTDDLNGYQQEGFGPMDRTVTP------------------HGRRASTARGYLDQAKSRP 212
Query: 136 NLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAINSPQILMVS 193
NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI SPQIL S
Sbjct: 213 NLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAIASPQILQRS 270
Query: 194 GIGPREHLRE 203
G+G E L E
Sbjct: 271 GVGNAELLAE 280
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDMGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDMGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDMGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------QGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ +I D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIIFD--GKRAVGVEWLEGDSTIPTRATANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 100/187 (53%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E + + + G L + + P+ AF+++G Q+G+
Sbjct: 112 GWAYADVLPYFKRMEHSHGGEEG----WRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFE 167
Query: 78 IVD-VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D NG+ Q GF + E ++ +G RWS + A+L P +R+N
Sbjct: 168 TTDDYNGSKQEGFGLM-------------------EQTIFSGRRWSAANAYLKPALKRKN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + + L K++I++ RA GVE+ +G V A +EV++SA + NSP++LM+SGIG
Sbjct: 209 VGMV-YGLARKIVIEDG--RATGVEIERGGKVEVVKATREVIVSASSFNSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P +HL +
Sbjct: 266 PGQHLND 272
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 97/187 (51%), Gaps = 28/187 (14%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPY-KTPIAHAFVQSGYQSGYP 77
WSY + P+F K+E I ++ YH G +++T+ P+ HA V++G Q+G+P
Sbjct: 120 WSYLDCLPYFRKAETRDIGPND----YHGGEGPVSVTKPKAGNNPLFHAMVEAGVQAGFP 175
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + + NG R ST+R +L ++R
Sbjct: 176 RTDDLNGYQQEGFGPMDRTVTP------------------NGRRASTARGYLDEAKKRST 217
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFAR--KEVVLSAGAINSPQILMVSG 194
L + +L +++ + KRAVGV + G+S R+ AR KEV+L GAI SPQIL SG
Sbjct: 218 LTIVTHALTDRILFE--GKRAVGVAYLVGDSDTRIQARARKEVLLCGGAIASPQILQRSG 275
Query: 195 IGPREHL 201
+GP E L
Sbjct: 276 VGPAEVL 282
>sp|A9AMZ9|BETA_BURM1 Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=betA PE=3 SV=1
Length = 566
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 26/187 (13%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAFVQSGYQSGYP 77
W+Y + P+F K+E I ++ YH G +++T P P+ A V++G Q+GYP
Sbjct: 119 WTYLDCLPYFKKAETRDIGPND----YHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYP 174
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + + G R ST+R +L + R N
Sbjct: 175 RTEDLNGYQQEGFGPMDRTVTP------------------KGRRASTARGYLDQAKTRPN 216
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
L + +L +++ D KRA GV ++GN + AR+EV++ +GAI SPQ+L SG+G
Sbjct: 217 LEIVTHALADRILFD--GKRASGVTYLRGNERATAHARREVLVCSGAIASPQLLQRSGVG 274
Query: 197 PREHLRE 203
P L+E
Sbjct: 275 PGAWLKE 281
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 27/187 (14%)
Query: 18 GWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYP 77
GW+Y +V P+F + E + + + G L + + P+ AF+++G Q+G+
Sbjct: 112 GWAYADVLPYFKRMEHSHGGEEG----WRGTDGPLHVQRGGFTNPLFRAFIEAGKQAGFE 167
Query: 78 IV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D NG+ Q GF + E ++ G RWS + A+L P +R N
Sbjct: 168 TTEDYNGSKQEGFGLM-------------------EQTIFAGRRWSAANAYLKPALKRDN 208
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196
+ + + L +++I+ + RA GVE+ +G V A +EV++SA + NSP++LM+SGIG
Sbjct: 209 VGIV-YGLARRIVIE--NGRATGVEIERGGRTEVVKANREVIVSASSFNSPKLLMLSGIG 265
Query: 197 PREHLRE 203
P +HL+E
Sbjct: 266 PAKHLKE 272
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 28/187 (14%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPY-KTPIAHAFVQSGYQSGYP 77
WSY + P+F K+E I ++ YH G +++T P+ HA V++G Q+G+P
Sbjct: 120 WSYLDCLPYFRKAETRDIGPND----YHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGFP 175
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + + NG R ST+R +L ++R
Sbjct: 176 RTDDLNGYQQEGFGPMDRTVTP------------------NGRRASTARGYLDEAKKRST 217
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFAR--KEVVLSAGAINSPQILMVSG 194
L + +L +++ + KRAVGV + G+S R+ AR KEV+L GAI SPQIL SG
Sbjct: 218 LTIVTHALTDRILFE--GKRAVGVAYLVGDSDTRIQARARKEVLLCGGAIASPQILQRSG 275
Query: 195 IGPREHL 201
+GP E L
Sbjct: 276 VGPAEVL 282
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 99/187 (52%), Gaps = 28/187 (14%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPY-KTPIAHAFVQSGYQSGYP 77
W+Y + P+F K+E I ++ YH G +++T P+ HA V++G Q+GYP
Sbjct: 118 WTYLDCLPYFRKAETRDIGPND----YHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYP 173
Query: 78 -IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
D+NG Q GF + + G R ST+R +L ++R
Sbjct: 174 RTEDLNGYQQEGFGPMDRTVTP------------------KGRRASTARGYLDTAKKRST 215
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFAR--KEVVLSAGAINSPQILMVSG 194
L + +L K++ + KRAVGV ++G+++ RV AR KEV++S+GAI SPQ+L SG
Sbjct: 216 LTIVTHALTDKILFE--GKRAVGVSYLQGSTEERVEARARKEVIVSSGAIASPQLLQRSG 273
Query: 195 IGPREHL 201
+GPR L
Sbjct: 274 VGPRALL 280
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 33/199 (16%)
Query: 13 YVEGPG---WSYDEVRPFFIKSEDNQI-ENDNIDSLYHRKGGYLTIT-EIPYKTPIAHAF 67
+ + PG WSY + P++ K+E + END YH G +++T P P+ A
Sbjct: 107 WAQEPGLENWSYLDCLPYYRKAETRDVGEND-----YHGGDGPVSVTTSKPGVNPLFEAM 161
Query: 68 VQSGYQSGYP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+++G Q+GYP D+NG Q GF + + +G R ST+R
Sbjct: 162 IEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTP------------------HGRRASTARG 203
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI--RVFARKEVVLSAGAI 184
+L + R NL + ++ + D KRAVGVE ++G+S I R A KEV+L AGAI
Sbjct: 204 YLDQAKSRPNLTIRTHAMTDHIFFD--GKRAVGVEWLEGDSTIPTRAAANKEVLLCAGAI 261
Query: 185 NSPQILMVSGIGPREHLRE 203
SPQIL SG+G E L E
Sbjct: 262 ASPQILQRSGVGNAELLAE 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,132,807
Number of Sequences: 539616
Number of extensions: 2945002
Number of successful extensions: 6777
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6344
Number of HSP's gapped (non-prelim): 161
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)