Query psy4106
Match_columns 209
No_of_seqs 211 out of 1233
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:09:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 6.3E-46 1.4E-50 338.3 15.1 189 1-209 152-342 (623)
2 TIGR01810 betA choline dehydro 100.0 5.1E-41 1.1E-45 308.9 18.1 184 1-209 94-279 (532)
3 PRK02106 choline dehydrogenase 100.0 1.2E-40 2.7E-45 308.1 18.5 184 1-209 100-286 (560)
4 PF00732 GMC_oxred_N: GMC oxid 100.0 3.1E-41 6.7E-46 288.1 9.3 186 1-209 92-282 (296)
5 COG2303 BetA Choline dehydroge 100.0 6.6E-37 1.4E-41 282.1 18.5 188 1-209 99-290 (542)
6 PLN02785 Protein HOTHEAD 100.0 1.4E-29 3E-34 235.3 15.2 161 1-209 143-314 (587)
7 TIGR02462 pyranose_ox pyranose 99.8 8E-18 1.7E-22 155.0 13.5 83 114-197 202-291 (544)
8 PRK12835 3-ketosteroid-delta-1 97.8 7.5E-05 1.6E-09 70.2 7.4 63 128-191 219-282 (584)
9 PRK12837 3-ketosteroid-delta-1 97.7 9.7E-05 2.1E-09 68.3 7.8 64 127-192 179-243 (513)
10 PRK07843 3-ketosteroid-delta-1 97.5 0.00028 6E-09 66.0 7.9 57 132-190 218-274 (557)
11 PRK12844 3-ketosteroid-delta-1 97.4 0.00042 9.2E-09 64.8 7.7 57 132-190 218-275 (557)
12 PRK07121 hypothetical protein; 97.3 0.00072 1.6E-08 62.1 7.6 58 132-190 187-245 (492)
13 PF00890 FAD_binding_2: FAD bi 97.2 0.0012 2.6E-08 58.9 7.7 54 133-190 152-207 (417)
14 PRK12845 3-ketosteroid-delta-1 97.2 0.0011 2.5E-08 62.0 7.4 58 132-191 227-285 (564)
15 PRK06134 putative FAD-binding 97.0 0.0021 4.6E-08 60.4 7.8 57 132-190 227-283 (581)
16 PRK12839 hypothetical protein; 97.0 0.0018 4E-08 60.7 7.3 57 133-190 225-282 (572)
17 PRK12843 putative FAD-binding 96.9 0.0031 6.7E-08 59.3 7.5 57 132-190 231-288 (578)
18 PRK08274 tricarballylate dehyd 96.9 0.0029 6.3E-08 57.5 6.9 63 132-197 141-204 (466)
19 PRK06175 L-aspartate oxidase; 96.7 0.0043 9.3E-08 56.2 6.7 52 132-186 139-190 (433)
20 PRK12842 putative succinate de 96.6 0.0083 1.8E-07 56.3 7.9 57 132-190 224-280 (574)
21 TIGR01816 sdhA_forward succina 96.4 0.0093 2E-07 55.9 7.3 51 133-186 130-182 (565)
22 PRK05675 sdhA succinate dehydr 96.4 0.0097 2.1E-07 55.9 7.2 52 133-186 137-190 (570)
23 TIGR01811 sdhA_Bsu succinate d 96.4 0.012 2.6E-07 55.6 7.8 51 134-186 145-197 (603)
24 PRK07395 L-aspartate oxidase; 96.4 0.0054 1.2E-07 57.4 5.4 52 133-185 146-197 (553)
25 PRK09078 sdhA succinate dehydr 96.3 0.012 2.5E-07 55.6 7.2 52 133-186 160-213 (598)
26 PRK07573 sdhA succinate dehydr 96.2 0.013 2.9E-07 55.8 7.1 51 133-186 181-233 (640)
27 PRK06263 sdhA succinate dehydr 96.2 0.013 2.9E-07 54.5 7.0 53 132-186 144-198 (543)
28 PRK13977 myosin-cross-reactive 96.2 0.013 2.7E-07 55.0 6.8 68 119-186 220-294 (576)
29 TIGR01813 flavo_cyto_c flavocy 96.2 0.013 2.8E-07 52.8 6.7 57 132-190 140-198 (439)
30 PLN02815 L-aspartate oxidase 96.2 0.012 2.6E-07 55.6 6.6 54 132-186 166-223 (594)
31 PRK08958 sdhA succinate dehydr 96.2 0.016 3.5E-07 54.6 7.3 52 133-186 154-207 (588)
32 PRK12834 putative FAD-binding 96.1 0.025 5.3E-07 52.8 8.0 55 134-191 164-234 (549)
33 PTZ00139 Succinate dehydrogena 96.1 0.018 3.8E-07 54.7 7.1 52 133-186 177-230 (617)
34 PRK06452 sdhA succinate dehydr 96.0 0.023 4.9E-07 53.4 7.4 50 133-185 147-198 (566)
35 PRK08275 putative oxidoreducta 96.0 0.019 4.2E-07 53.6 6.9 52 132-185 147-200 (554)
36 TIGR03377 glycerol3P_GlpA glyc 96.0 0.07 1.5E-06 49.3 10.4 59 133-195 139-199 (516)
37 PLN00128 Succinate dehydrogena 96.0 0.022 4.8E-07 54.2 7.1 52 133-186 198-251 (635)
38 PF01266 DAO: FAD dependent ox 95.9 0.026 5.6E-07 48.3 6.6 56 133-196 158-213 (358)
39 PRK07803 sdhA succinate dehydr 95.7 0.04 8.7E-07 52.4 8.0 48 136-186 165-214 (626)
40 PRK07512 L-aspartate oxidase; 95.7 0.017 3.7E-07 53.5 5.3 50 133-185 148-197 (513)
41 PRK08626 fumarate reductase fl 95.7 0.03 6.6E-07 53.5 7.0 51 133-186 169-221 (657)
42 PRK09077 L-aspartate oxidase; 95.6 0.035 7.5E-07 51.7 6.7 54 132-186 149-208 (536)
43 PTZ00306 NADH-dependent fumara 95.5 0.042 9E-07 55.9 7.6 52 135-187 560-622 (1167)
44 PRK08641 sdhA succinate dehydr 95.5 0.053 1.2E-06 51.1 7.6 50 135-186 150-201 (589)
45 PRK06481 fumarate reductase fl 95.4 0.05 1.1E-06 50.3 7.2 56 133-191 201-258 (506)
46 PRK09231 fumarate reductase fl 95.4 0.053 1.1E-06 51.1 7.5 51 133-186 145-197 (582)
47 TIGR01176 fum_red_Fp fumarate 95.4 0.048 1E-06 51.4 7.2 51 133-186 144-196 (580)
48 PRK05945 sdhA succinate dehydr 95.4 0.054 1.2E-06 50.9 7.5 52 132-186 145-198 (575)
49 KOG2404|consensus 95.4 0.017 3.8E-07 50.5 3.8 48 136-186 159-207 (477)
50 TIGR00551 nadB L-aspartate oxi 95.4 0.044 9.5E-07 50.4 6.7 50 134-186 141-190 (488)
51 TIGR01812 sdhA_frdA_Gneg succi 95.4 0.047 1E-06 51.1 6.9 51 133-186 140-192 (566)
52 PRK07057 sdhA succinate dehydr 95.2 0.064 1.4E-06 50.6 7.1 52 133-186 159-212 (591)
53 COG0029 NadB Aspartate oxidase 95.1 0.023 5E-07 52.1 3.8 57 127-185 139-196 (518)
54 PRK08205 sdhA succinate dehydr 95.1 0.062 1.4E-06 50.6 6.8 54 132-186 150-207 (583)
55 PRK06069 sdhA succinate dehydr 95.1 0.066 1.4E-06 50.3 6.9 50 133-185 149-200 (577)
56 TIGR02485 CobZ_N-term precorri 94.9 0.073 1.6E-06 48.0 6.6 54 132-188 133-186 (432)
57 PF06039 Mqo: Malate:quinone o 94.9 0.099 2.1E-06 47.8 7.3 64 131-196 191-254 (488)
58 PRK06854 adenylylsulfate reduc 94.9 0.086 1.9E-06 49.9 7.2 50 133-185 144-195 (608)
59 PRK08071 L-aspartate oxidase; 94.6 0.088 1.9E-06 48.8 6.4 49 135-186 142-191 (510)
60 PRK11101 glpA sn-glycerol-3-ph 94.6 0.15 3.3E-06 47.6 8.0 59 133-195 160-220 (546)
61 PRK13800 putative oxidoreducta 94.5 0.13 2.8E-06 50.9 7.6 49 135-186 156-206 (897)
62 PF13738 Pyr_redox_3: Pyridine 94.4 0.022 4.8E-07 45.3 1.8 62 126-194 86-147 (203)
63 PLN02464 glycerol-3-phosphate 94.4 0.18 3.9E-06 48.0 8.1 60 133-194 243-304 (627)
64 TIGR02061 aprA adenosine phosp 94.4 0.15 3.4E-06 48.4 7.6 51 135-186 139-192 (614)
65 PRK07804 L-aspartate oxidase; 94.3 0.12 2.5E-06 48.3 6.4 51 133-185 155-210 (541)
66 COG0579 Predicted dehydrogenas 93.7 0.27 5.9E-06 44.7 7.5 59 134-198 165-223 (429)
67 PRK05257 malate:quinone oxidor 92.7 0.51 1.1E-05 43.7 7.9 60 133-196 195-256 (494)
68 TIGR03378 glycerol3P_GlpB glyc 92.6 0.36 7.8E-06 43.8 6.6 57 133-193 274-330 (419)
69 PTZ00383 malate:quinone oxidor 92.4 0.47 1E-05 44.0 7.2 54 136-197 231-284 (497)
70 COG0578 GlpA Glycerol-3-phosph 92.4 0.26 5.6E-06 46.0 5.4 60 133-197 175-236 (532)
71 PRK05329 anaerobic glycerol-3- 91.7 0.43 9.4E-06 43.3 6.0 55 131-189 268-322 (422)
72 TIGR01320 mal_quin_oxido malat 91.7 0.77 1.7E-05 42.3 7.7 61 133-197 189-251 (483)
73 PRK13339 malate:quinone oxidor 91.4 0.92 2E-05 42.1 7.9 67 127-197 190-258 (497)
74 PF01134 GIDA: Glucose inhibit 90.9 0.71 1.5E-05 41.5 6.5 47 132-185 106-152 (392)
75 TIGR02733 desat_CrtD C-3',4' d 90.8 0.61 1.3E-05 42.7 6.1 55 133-190 243-299 (492)
76 PF12831 FAD_oxidored: FAD dep 90.6 0.076 1.7E-06 48.0 0.0 63 127-195 95-157 (428)
77 PLN02661 Putative thiazole syn 89.7 0.66 1.4E-05 41.2 5.1 52 131-185 182-244 (357)
78 TIGR02730 carot_isom carotene 89.1 0.72 1.6E-05 42.3 5.2 54 132-191 239-292 (493)
79 PRK06185 hypothetical protein; 89.1 1.4 3E-05 39.0 6.9 60 133-197 120-179 (407)
80 KOG0042|consensus 88.8 0.15 3.3E-06 47.5 0.5 70 114-188 219-290 (680)
81 PRK04176 ribulose-1,5-biphosph 88.7 0.87 1.9E-05 38.4 5.0 51 133-185 115-173 (257)
82 TIGR02352 thiamin_ThiO glycine 88.4 0.95 2.1E-05 38.6 5.2 50 133-190 148-197 (337)
83 TIGR01373 soxB sarcosine oxida 88.1 1.4 3.1E-05 39.0 6.3 57 132-195 193-249 (407)
84 TIGR02734 crtI_fam phytoene de 87.9 1.1 2.4E-05 41.0 5.6 55 133-193 230-284 (502)
85 PRK12266 glpD glycerol-3-phosp 87.2 2.1 4.5E-05 39.7 6.9 54 133-191 166-221 (508)
86 PRK00711 D-amino acid dehydrog 86.6 2.1 4.6E-05 37.9 6.5 53 132-192 211-263 (416)
87 TIGR02731 phytoene_desat phyto 86.2 1.4 3E-05 39.8 5.2 48 134-183 225-274 (453)
88 KOG4254|consensus 85.7 0.62 1.3E-05 42.7 2.5 54 128-187 270-323 (561)
89 TIGR02732 zeta_caro_desat caro 84.9 2.2 4.8E-05 39.1 5.8 57 133-190 230-289 (474)
90 TIGR03862 flavo_PP4765 unchara 84.5 3.3 7.1E-05 37.1 6.6 51 131-189 95-145 (376)
91 PRK11728 hydroxyglutarate oxid 84.3 3.6 7.8E-05 36.4 6.8 55 133-196 160-214 (393)
92 PRK10157 putative oxidoreducta 84.3 2.2 4.9E-05 38.5 5.6 62 127-197 113-174 (428)
93 TIGR00136 gidA glucose-inhibit 84.3 1.1 2.3E-05 42.7 3.6 54 132-191 107-160 (617)
94 PRK08401 L-aspartate oxidase; 83.6 3 6.5E-05 38.1 6.2 47 132-186 130-176 (466)
95 PRK05192 tRNA uridine 5-carbox 83.5 2.6 5.7E-05 40.2 5.8 46 133-185 112-157 (618)
96 PRK13369 glycerol-3-phosphate 82.5 4.1 8.9E-05 37.6 6.6 54 133-191 166-220 (502)
97 COG1053 SdhA Succinate dehydro 81.3 1.5 3.2E-05 41.3 3.3 51 133-185 150-202 (562)
98 PF03486 HI0933_like: HI0933-l 80.6 4.6 9.9E-05 36.5 6.1 51 132-188 119-169 (409)
99 PRK07208 hypothetical protein; 80.3 4.6 9.9E-05 36.7 6.1 55 134-190 230-285 (479)
100 TIGR00292 thiazole biosynthesi 79.9 3.9 8.4E-05 34.4 5.1 59 133-192 111-178 (254)
101 PRK12409 D-amino acid dehydrog 79.9 4.5 9.7E-05 35.9 5.8 56 132-192 207-264 (410)
102 PRK15317 alkyl hydroperoxide r 79.6 8.5 0.00018 35.6 7.7 57 134-193 399-457 (517)
103 PLN02487 zeta-carotene desatur 79.1 4.5 9.8E-05 38.2 5.7 57 133-190 306-365 (569)
104 TIGR01377 soxA_mon sarcosine o 78.4 6.3 0.00014 34.3 6.2 55 133-196 156-210 (380)
105 TIGR01292 TRX_reduct thioredox 76.1 15 0.00032 30.5 7.6 56 134-193 189-246 (300)
106 COG3573 Predicted oxidoreducta 75.8 6.2 0.00013 35.2 5.2 57 131-190 162-233 (552)
107 PF13434 K_oxygenase: L-lysine 75.6 5.6 0.00012 35.0 5.0 60 127-189 100-161 (341)
108 PRK12810 gltD glutamate syntha 74.8 8 0.00017 35.3 6.0 60 133-195 340-411 (471)
109 TIGR01316 gltA glutamate synth 74.4 12 0.00027 33.9 7.1 61 133-195 320-397 (449)
110 PRK07364 2-octaprenyl-6-methox 74.2 8.3 0.00018 34.1 5.8 51 133-187 133-183 (415)
111 PLN02985 squalene monooxygenas 73.3 9.8 0.00021 35.4 6.3 52 133-188 159-211 (514)
112 PRK07233 hypothetical protein; 72.4 6.7 0.00014 34.7 4.8 50 134-190 210-259 (434)
113 COG1233 Phytoene dehydrogenase 72.1 5.3 0.00011 36.8 4.2 54 131-191 233-286 (487)
114 PRK12831 putative oxidoreducta 71.4 17 0.00037 33.3 7.3 61 133-195 329-407 (464)
115 PLN02172 flavin-containing mon 70.8 5.4 0.00012 36.6 3.9 66 126-195 115-183 (461)
116 TIGR03197 MnmC_Cterm tRNA U-34 70.0 13 0.00027 32.7 6.0 50 132-190 145-194 (381)
117 PRK06126 hypothetical protein; 69.0 15 0.00033 34.0 6.6 49 133-185 138-188 (545)
118 PRK10262 thioredoxin reductase 68.9 27 0.00058 29.8 7.7 61 132-196 195-258 (321)
119 TIGR01318 gltD_gamma_fam gluta 68.7 15 0.00033 33.6 6.4 60 134-195 332-409 (467)
120 COG0445 GidA Flavin-dependent 68.3 3.1 6.8E-05 39.1 1.8 53 132-190 111-163 (621)
121 TIGR03140 AhpF alkyl hydropero 67.1 25 0.00053 32.6 7.5 56 134-192 400-457 (515)
122 PF06100 Strep_67kDa_ant: Stre 66.7 18 0.0004 33.6 6.4 67 119-185 201-274 (500)
123 COG3634 AhpF Alkyl hydroperoxi 66.7 19 0.00041 32.4 6.2 58 133-193 401-460 (520)
124 PRK10015 oxidoreductase; Provi 66.3 13 0.00028 33.6 5.3 50 127-183 113-162 (429)
125 PRK12769 putative oxidoreducta 65.8 14 0.0003 35.4 5.7 61 133-195 517-595 (654)
126 COG0644 FixC Dehydrogenases (f 65.5 13 0.00029 33.0 5.2 51 127-183 100-150 (396)
127 PRK11259 solA N-methyltryptoph 63.7 21 0.00045 31.0 6.1 49 133-190 160-208 (376)
128 TIGR02032 GG-red-SF geranylger 63.7 21 0.00045 29.5 5.8 58 132-197 101-158 (295)
129 PLN02612 phytoene desaturase 62.9 13 0.00029 34.9 5.0 45 134-183 320-364 (567)
130 PRK11445 putative oxidoreducta 60.9 39 0.00084 29.4 7.3 51 134-188 110-160 (351)
131 PRK12809 putative oxidoreducta 60.7 23 0.0005 33.8 6.2 60 134-195 501-578 (639)
132 PRK06416 dihydrolipoamide dehy 60.7 24 0.00053 31.9 6.1 60 132-195 223-284 (462)
133 PRK09564 coenzyme A disulfide 58.9 26 0.00057 31.3 6.0 57 132-196 201-257 (444)
134 TIGR01350 lipoamide_DH dihydro 58.2 24 0.00053 31.8 5.7 59 132-195 221-281 (461)
135 PF07992 Pyr_redox_2: Pyridine 58.0 20 0.00044 27.8 4.6 49 133-184 69-121 (201)
136 PRK07818 dihydrolipoamide dehy 57.9 24 0.00051 32.1 5.5 60 132-195 223-285 (466)
137 COG3486 IucD Lysine/ornithine 57.4 34 0.00073 31.2 6.2 55 133-190 289-346 (436)
138 PRK06183 mhpA 3-(3-hydroxyphen 56.9 39 0.00085 31.3 6.9 54 134-191 126-180 (538)
139 COG2081 Predicted flavoprotein 56.9 24 0.00053 31.9 5.2 57 124-188 114-170 (408)
140 TIGR02053 MerA mercuric reduct 56.2 21 0.00045 32.4 4.8 53 132-188 217-269 (463)
141 PRK12771 putative glutamate sy 56.1 39 0.00084 31.7 6.8 60 134-196 317-392 (564)
142 PF13434 K_oxygenase: L-lysine 55.4 32 0.00069 30.2 5.7 48 133-183 290-339 (341)
143 PRK08244 hypothetical protein; 55.1 33 0.00071 31.3 6.0 49 132-185 110-159 (493)
144 COG2072 TrkA Predicted flavopr 54.5 27 0.00059 31.8 5.3 58 134-194 96-153 (443)
145 TIGR01372 soxA sarcosine oxida 54.4 51 0.0011 33.3 7.6 60 133-196 362-422 (985)
146 PRK06370 mercuric reductase; V 54.2 31 0.00066 31.3 5.6 60 132-195 222-283 (463)
147 PRK08243 4-hydroxybenzoate 3-m 54.1 47 0.001 29.3 6.7 51 133-186 114-164 (392)
148 TIGR03364 HpnW_proposed FAD de 53.5 19 0.00042 31.2 4.1 44 134-190 158-201 (365)
149 TIGR02028 ChlP geranylgeranyl 53.3 34 0.00073 30.5 5.7 66 127-196 98-169 (398)
150 PRK04965 NADH:flavorubredoxin 53.3 43 0.00093 29.4 6.3 58 132-196 193-250 (377)
151 KOG2311|consensus 52.0 12 0.00027 34.9 2.6 54 133-190 136-191 (679)
152 PF01593 Amino_oxidase: Flavin 51.8 34 0.00074 29.3 5.4 41 136-183 223-263 (450)
153 PRK06327 dihydrolipoamide dehy 51.3 28 0.0006 31.8 4.9 55 132-190 234-289 (475)
154 PF01494 FAD_binding_3: FAD bi 50.9 29 0.00063 29.2 4.7 49 133-184 122-171 (356)
155 PRK11749 dihydropyrimidine deh 50.5 43 0.00094 30.3 6.0 56 133-191 322-393 (457)
156 PRK13512 coenzyme A disulfide 50.1 41 0.00088 30.4 5.7 47 133-185 69-117 (438)
157 PRK07045 putative monooxygenas 48.7 38 0.00083 29.7 5.2 48 133-185 118-165 (388)
158 PRK14989 nitrite reductase sub 48.5 43 0.00093 33.3 6.0 59 132-195 197-255 (847)
159 PRK06115 dihydrolipoamide dehy 48.3 32 0.00069 31.4 4.8 54 132-189 225-280 (466)
160 PRK12775 putative trifunctiona 47.7 66 0.0014 32.7 7.2 57 133-191 620-692 (1006)
161 PRK06912 acoL dihydrolipoamide 47.2 29 0.00063 31.5 4.3 50 132-187 221-270 (458)
162 TIGR03385 CoA_CoA_reduc CoA-di 45.8 24 0.00052 31.5 3.5 55 133-195 55-111 (427)
163 TIGR01984 UbiH 2-polyprenyl-6- 45.7 42 0.00091 29.2 5.0 43 135-184 119-161 (382)
164 COG3075 GlpB Anaerobic glycero 45.5 19 0.00042 32.0 2.7 52 133-188 269-320 (421)
165 PTZ00363 rab-GDP dissociation 45.1 55 0.0012 29.9 5.8 47 133-184 243-289 (443)
166 PRK05976 dihydrolipoamide dehy 44.3 40 0.00087 30.6 4.8 55 132-189 231-285 (472)
167 PRK06184 hypothetical protein; 43.9 72 0.0016 29.2 6.4 50 133-186 120-169 (502)
168 PRK12770 putative glutamate sy 43.7 63 0.0014 28.1 5.8 61 132-196 220-298 (352)
169 PRK08132 FAD-dependent oxidore 43.7 81 0.0018 29.3 6.8 50 133-186 137-186 (547)
170 PRK12779 putative bifunctional 43.2 1E+02 0.0022 31.2 7.7 55 134-189 496-566 (944)
171 TIGR03329 Phn_aa_oxid putative 42.7 45 0.00099 30.2 4.9 45 132-185 193-237 (460)
172 COG0654 UbiH 2-polyprenyl-6-me 42.6 49 0.0011 29.2 5.0 49 132-187 115-163 (387)
173 TIGR00275 flavoprotein, HI0933 42.6 45 0.00097 29.8 4.7 48 132-187 115-162 (400)
174 PF00743 FMO-like: Flavin-bind 42.5 12 0.00027 34.9 1.2 65 126-191 88-156 (531)
175 PF00070 Pyr_redox: Pyridine n 42.4 37 0.00081 22.6 3.3 31 130-163 48-78 (80)
176 TIGR01988 Ubi-OHases Ubiquinon 42.3 50 0.0011 28.6 4.9 47 131-184 116-162 (385)
177 TIGR03467 HpnE squalene-associ 41.6 42 0.0009 29.3 4.4 50 134-189 209-258 (419)
178 PRK08773 2-octaprenyl-3-methyl 41.4 62 0.0013 28.4 5.4 55 133-196 124-178 (392)
179 PRK13984 putative oxidoreducta 41.3 87 0.0019 29.5 6.7 55 134-191 474-544 (604)
180 PRK12778 putative bifunctional 40.5 66 0.0014 31.3 5.9 56 133-190 619-691 (752)
181 PRK05732 2-octaprenyl-6-methox 40.4 53 0.0011 28.6 4.8 55 133-196 124-178 (395)
182 PRK09754 phenylpropionate diox 40.2 81 0.0018 27.9 6.0 57 132-196 196-252 (396)
183 KOG1298|consensus 40.1 32 0.0007 31.3 3.3 51 132-186 158-209 (509)
184 TIGR01438 TGR thioredoxin and 39.7 43 0.00093 30.8 4.2 56 132-191 230-285 (484)
185 PRK01747 mnmC bifunctional tRN 38.8 65 0.0014 30.8 5.5 47 136-190 421-467 (662)
186 PLN02576 protoporphyrinogen ox 38.0 85 0.0018 28.5 5.9 51 137-191 252-303 (496)
187 KOG2853|consensus 37.9 93 0.002 28.1 5.7 46 156-203 291-337 (509)
188 COG2509 Uncharacterized FAD-de 37.9 83 0.0018 29.2 5.6 50 134-189 185-234 (486)
189 TIGR02374 nitri_red_nirB nitri 37.8 65 0.0014 31.7 5.4 57 132-195 192-248 (785)
190 TIGR02023 BchP-ChlP geranylger 37.3 86 0.0019 27.6 5.7 63 127-196 97-164 (388)
191 PRK08163 salicylate hydroxylas 36.6 59 0.0013 28.4 4.5 49 133-188 121-169 (396)
192 PRK07538 hypothetical protein; 36.2 62 0.0013 28.7 4.6 49 135-186 117-165 (413)
193 PRK09564 coenzyme A disulfide 36.0 76 0.0016 28.4 5.2 46 133-184 67-114 (444)
194 COG0492 TrxB Thioredoxin reduc 35.8 1.6E+02 0.0034 25.6 6.9 58 133-195 190-248 (305)
195 COG1252 Ndh NADH dehydrogenase 34.9 56 0.0012 29.7 4.1 54 131-194 218-271 (405)
196 PRK07190 hypothetical protein; 34.4 90 0.0019 28.8 5.5 46 133-185 120-165 (487)
197 PRK07608 ubiquinone biosynthes 34.1 68 0.0015 27.9 4.5 55 131-195 121-175 (388)
198 KOG2415|consensus 32.8 81 0.0018 29.2 4.7 79 125-205 186-278 (621)
199 KOG2852|consensus 31.5 38 0.00082 29.7 2.3 60 131-195 157-217 (380)
200 TIGR03385 CoA_CoA_reduc CoA-di 31.1 1.3E+02 0.0028 26.7 5.9 56 132-196 189-244 (427)
201 PRK06834 hypothetical protein; 29.6 1.2E+02 0.0026 27.9 5.5 46 133-185 111-156 (488)
202 PRK09126 hypothetical protein; 29.0 1.2E+02 0.0027 26.3 5.3 45 133-184 122-166 (392)
203 PRK14727 putative mercuric red 28.8 88 0.0019 28.6 4.4 56 132-195 238-295 (479)
204 PRK10759 lipoprotein; Provisio 28.2 27 0.00058 25.6 0.7 19 5-25 71-89 (106)
205 PLN00093 geranylgeranyl diphos 27.9 1.3E+02 0.0028 27.5 5.3 60 133-196 143-208 (450)
206 PTZ00367 squalene epoxidase; P 27.5 1.9E+02 0.0041 27.4 6.4 52 133-186 145-220 (567)
207 PRK12814 putative NADPH-depend 27.5 1.5E+02 0.0032 28.5 5.9 61 134-195 373-447 (652)
208 PRK06847 hypothetical protein; 27.3 1.7E+02 0.0036 25.3 5.8 52 133-191 118-169 (375)
209 KOG2820|consensus 26.3 1.2E+02 0.0025 27.3 4.4 57 131-192 162-218 (399)
210 PRK06567 putative bifunctional 25.7 1.3E+02 0.0029 30.7 5.2 55 133-189 651-732 (1028)
211 PRK08020 ubiF 2-octaprenyl-3-m 25.5 1.5E+02 0.0033 25.8 5.2 56 133-197 124-179 (391)
212 PRK07333 2-octaprenyl-6-methox 25.4 1.7E+02 0.0036 25.6 5.4 55 133-196 122-176 (403)
213 PRK04965 NADH:flavorubredoxin 25.1 1.6E+02 0.0034 25.7 5.2 42 133-184 69-110 (377)
214 PRK06116 glutathione reductase 24.8 1.3E+02 0.0027 27.2 4.6 58 132-195 218-277 (450)
215 PRK06475 salicylate hydroxylas 24.5 1.1E+02 0.0024 27.0 4.1 50 133-187 119-168 (400)
216 PF04820 Trp_halogenase: Trypt 24.3 89 0.0019 28.5 3.6 53 125-183 157-209 (454)
217 PRK05249 soluble pyridine nucl 23.8 1E+02 0.0022 27.8 3.8 57 132-195 226-284 (461)
218 COG0665 DadA Glycine/D-amino a 23.6 1.6E+02 0.0034 25.4 4.9 52 134-194 169-220 (387)
219 cd01775 CYR1_RA Ubiquitin doma 23.3 56 0.0012 23.5 1.6 21 187-207 68-88 (97)
220 PRK12416 protoporphyrinogen ox 23.1 1.8E+02 0.0039 26.1 5.3 46 137-189 239-284 (463)
221 PRK07845 flavoprotein disulfid 23.0 1.3E+02 0.0029 27.3 4.5 57 132-195 228-286 (466)
222 PRK15317 alkyl hydroperoxide r 23.0 1.6E+02 0.0035 27.2 5.0 50 127-183 271-320 (517)
223 PRK06292 dihydrolipoamide dehy 22.8 1.8E+02 0.004 26.1 5.3 57 133-195 221-280 (460)
224 TIGR01421 gluta_reduc_1 glutat 22.8 1.3E+02 0.0028 27.2 4.3 59 132-195 217-277 (450)
225 TIGR00562 proto_IX_ox protopor 22.3 2.2E+02 0.0047 25.5 5.7 47 137-190 238-284 (462)
226 PRK08849 2-octaprenyl-3-methyl 22.3 1.8E+02 0.004 25.4 5.1 47 133-187 122-168 (384)
227 PRK09897 hypothetical protein; 22.3 2.7E+02 0.0059 26.2 6.4 43 137-185 124-166 (534)
228 PRK06467 dihydrolipoamide dehy 22.2 1.6E+02 0.0036 26.7 4.9 55 137-195 229-286 (471)
229 TIGR03143 AhpF_homolog putativ 22.0 3.3E+02 0.0072 25.4 7.0 56 133-191 190-252 (555)
230 PF07897 DUF1675: Protein of u 21.8 1.5E+02 0.0033 25.6 4.3 40 154-198 235-276 (284)
231 PRK05714 2-octaprenyl-3-methyl 21.7 2.1E+02 0.0045 25.1 5.4 46 133-186 123-168 (405)
232 TIGR02360 pbenz_hydroxyl 4-hyd 21.7 2.7E+02 0.0058 24.5 6.0 50 134-187 115-164 (390)
233 PRK08010 pyridine nucleotide-d 21.0 1.3E+02 0.0029 26.9 4.0 56 132-195 209-266 (441)
234 PRK13512 coenzyme A disulfide 20.6 2.3E+02 0.0051 25.4 5.5 53 132-195 199-251 (438)
235 PRK14694 putative mercuric red 20.4 1.4E+02 0.0031 27.1 4.1 51 132-190 228-278 (468)
No 1
>KOG1238|consensus
Probab=100.00 E-value=6.3e-46 Score=338.28 Aligned_cols=189 Identities=44% Similarity=0.652 Sum_probs=176.2
Q ss_pred CCCChHhHHHHHhcCCCCCCccchHHHHHHhhcCcCCCCCCCCCCCCCCCceeeecCCCCCHHHHHHHHHHHHcCCCCCC
Q psy4106 1 MSPNLVFRQTVAYVEGPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYPIVD 80 (209)
Q Consensus 1 ~r~~~~~~d~W~~~g~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~a~~~lG~~~~d 80 (209)
+|+++.|||+|++.|++||+|++++|||+|+|+...+. ....++|+..||+.+....+.+++..+|.++.+++|.+..|
T Consensus 152 ~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~-~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~~~D 230 (623)
T KOG1238|consen 152 VRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPD-PELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGSIFD 230 (623)
T ss_pred ecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-cccCcccccCCcceeccccccCchhhHhHHhHHhcCCCccC
Confidence 48999999999999999999999999999999986542 23445999999999999888999999999999999977799
Q ss_pred CCCCCCCCccccccccccchhhcccccceeeeeeccCCccccccccccccccc-CCCeEEEcCeEEEEEEeeCCCCeEEE
Q psy4106 81 VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRR-RRNLHVTKFSLVTKLIIDEKSKRAVG 159 (209)
Q Consensus 81 ~n~~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~R~sa~~~~L~~~~~-~~nl~i~~~~~V~rI~~~~~~~~a~g 159 (209)
+|+...+|+...+. ++++|.|+|+..+||.|+.. |+||++..++.|+||++|..+++|.|
T Consensus 231 ~nG~~~tg~~~l~~-------------------t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~g 291 (623)
T KOG1238|consen 231 RNGERHTGASLLQY-------------------TIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKG 291 (623)
T ss_pred CCCccccchhhhhc-------------------cccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEE
Confidence 99999999998887 89999999999999999876 99999999999999999987889999
Q ss_pred EEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHcCCCCcchhhcCCCccC
Q psy4106 160 VELMKG-NSKIRVFARKEVVLSAGAINSPQILMVSGIGPREHLREKSKFFR 209 (209)
Q Consensus 160 V~~~~~-g~~~~v~A~keVILsaGai~TP~lLl~SGIG~~~~L~~~gI~~~ 209 (209)
|++..+ |++++++|+||||||||||+||||||+|||||+++|+++||||+
T Consensus 292 v~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv 342 (623)
T KOG1238|consen 292 VEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVV 342 (623)
T ss_pred EEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCee
Confidence 999988 89999999999999999999999999999999999999999984
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=5.1e-41 Score=308.92 Aligned_cols=184 Identities=39% Similarity=0.575 Sum_probs=164.0
Q ss_pred CCCChHhHHHHHh-cCCCCCCccchHHHHHHhhcCcCCCCCCCCCCCCCCCceeeecCCCCCHHHHHHHHHHHHcCCCC-
Q psy4106 1 MSPNLVFRQTVAY-VEGPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYPI- 78 (209)
Q Consensus 1 ~r~~~~~~d~W~~-~g~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~a~~~lG~~~- 78 (209)
+|+++.|||.|++ .|+++|+|++|+|||+|+|+++.. ..++||.+||+.+.+++...+..+.|.++++++|++.
T Consensus 94 ~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~----~~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~~G~~~~ 169 (532)
T TIGR01810 94 QRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG----EKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKT 169 (532)
T ss_pred ecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC----CcccCCCCCCEEEecCCCCCHHHHHHHHHHHHcCCCcc
Confidence 5999999999998 799999999999999999998763 2357999999999988777888999999999999998
Q ss_pred CCCCCCCCCCccccccccccchhhcccccceeeeeeccCCcccccccccccccccCCCeEEEcCeEEEEEEeeCCCCeEE
Q psy4106 79 VDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAV 158 (209)
Q Consensus 79 ~d~n~~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~R~sa~~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~ 158 (209)
.|.|+....|++.+.. +|++|+|+|+..+||.++..++|++|+++++|+||+++ +++|+
T Consensus 170 ~~~~~~~~~g~~~~~~-------------------~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~--~~ra~ 228 (532)
T TIGR01810 170 PDVNGFRQEGFGPMDS-------------------TVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRAT 228 (532)
T ss_pred CCCCCCCccceEEEEE-------------------EcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEec--CCeEE
Confidence 7788776777776655 78899999999999998877999999999999999998 57999
Q ss_pred EEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCCcchhhcCCCccC
Q psy4106 159 GVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGPREHLREKSKFFR 209 (209)
Q Consensus 159 gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~~~~L~~~gI~~~ 209 (209)
||+|...+...++.++|+||||||||+||+|||+|||||+++|+++||+++
T Consensus 229 GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~ 279 (532)
T TIGR01810 229 GVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPR 279 (532)
T ss_pred EEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeE
Confidence 999987665556666689999999999999999999999999999999974
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.2e-40 Score=308.13 Aligned_cols=184 Identities=41% Similarity=0.671 Sum_probs=163.0
Q ss_pred CCCChHhHHHHHhc-CCCCCCccchHHHHHHhhcCcCCCCCCCCCCCCCCCceeeecC-CCCCHHHHHHHHHHHHcCCCC
Q psy4106 1 MSPNLVFRQTVAYV-EGPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEI-PYKTPIAHAFVQSGYQSGYPI 78 (209)
Q Consensus 1 ~r~~~~~~d~W~~~-g~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~g~~Gpl~v~~~-~~~~~~~~~~~~a~~~lG~~~ 78 (209)
+|+++.|||.|++. |+++|+|++|+|||+|+|+++.. ...+||..||+++..+ .+..+..+.|.++++++|++.
T Consensus 100 ~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~----~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~~lG~~~ 175 (560)
T PRK02106 100 IRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG----EDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPR 175 (560)
T ss_pred ecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC----CccccCCCCCEEEeCCCCCCCHHHHHHHHHHHHcCCCc
Confidence 59999999999986 89999999999999999998732 3357899999999876 567889999999999999998
Q ss_pred -CCCCCCCCCCccccccccccchhhcccccceeeeeeccCCcccccccccccccccCCCeEEEcCeEEEEEEeeCCCCeE
Q psy4106 79 -VDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRA 157 (209)
Q Consensus 79 -~d~n~~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~R~sa~~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a 157 (209)
.|.|++...|++.++. +|.+|+|+|+..+||+++.+++|++|++++.|+||+++ +++|
T Consensus 176 ~~~~~~~~~~g~~~~~~-------------------~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~--~~~a 234 (560)
T PRK02106 176 TDDLNGYQQEGFGPMDR-------------------TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFE--GKRA 234 (560)
T ss_pred CCCCCCCCCceeEEEee-------------------ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEe--CCeE
Confidence 7888877778776665 78899999999999999878999999999999999998 5799
Q ss_pred EEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCCcchhhcCCCccC
Q psy4106 158 VGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGPREHLREKSKFFR 209 (209)
Q Consensus 158 ~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~~~~L~~~gI~~~ 209 (209)
+||+|.+.+...++.++|+||||||||+||+|||+|||||+++|+++||+++
T Consensus 235 ~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~ 286 (560)
T PRK02106 235 VGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVV 286 (560)
T ss_pred EEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceE
Confidence 9999987655555666689999999999999999999999999999999974
No 4
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=3.1e-41 Score=288.08 Aligned_cols=186 Identities=33% Similarity=0.552 Sum_probs=156.8
Q ss_pred CCCChHhHHHHHhc-CCCCCCccchHHHHHHhhcCcCCCCCCCCCCCCCCCceee-ecCCCCCHHHHHHHHHHHHcCCCC
Q psy4106 1 MSPNLVFRQTVAYV-EGPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTI-TEIPYKTPIAHAFVQSGYQSGYPI 78 (209)
Q Consensus 1 ~r~~~~~~d~W~~~-g~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~g~~Gpl~v-~~~~~~~~~~~~~~~a~~~lG~~~ 78 (209)
+|+++.|||.|+.. |.++|+|++|+|||+++|+++.++ ...|+.++|+++ ..+....+....|.++++++|++.
T Consensus 92 ~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~----~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G~~~ 167 (296)
T PF00732_consen 92 FRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS----SDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELGIPV 167 (296)
T ss_dssp -B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB----GGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTTHHB
T ss_pred ccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc----ccccccccccccccccCCCCHHHHHHHHHHHHcCCcc
Confidence 58999999999985 888999999999999999998863 668899999999 455566788899999999999995
Q ss_pred -CCCCCCCCCCccccccccccchhhcccccceeeeeeccCCcccccccccccccccCCCeEEEcCeEEEEEEeeCCCCeE
Q psy4106 79 -VDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRA 157 (209)
Q Consensus 79 -~d~n~~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~R~sa~~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a 157 (209)
.+++.+..+|+|.... .|++|+|+|+..+||.++.+++|++|+++++|+||+++.++++|
T Consensus 168 ~~~~~~~~~~g~~~~~~-------------------~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a 228 (296)
T PF00732_consen 168 PQDFNGCDPCGFCMTGF-------------------NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRA 228 (296)
T ss_dssp CSCTTSSTCSEEEECEE-------------------CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEE
T ss_pred ccccccccccccccccc-------------------cccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccce
Confidence 6777776666665433 58999999999999999988999999999999999998667899
Q ss_pred EEEEEEeC-Ce-EEEEEeCcEEEEcCCCcccHHHHHHcCCCCcchhhcCCCccC
Q psy4106 158 VGVELMKG-NS-KIRVFARKEVVLSAGAINSPQILMVSGIGPREHLREKSKFFR 209 (209)
Q Consensus 158 ~gV~~~~~-g~-~~~v~A~keVILsaGai~TP~lLl~SGIG~~~~L~~~gI~~~ 209 (209)
+||+|.+. +. .+.+.++|+||||||||+||+|||+|||||.++|+++||+++
T Consensus 229 ~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~ 282 (296)
T PF00732_consen 229 TGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVV 282 (296)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHS
T ss_pred eeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccccHHHHHHcCCCce
Confidence 99999974 33 344555589999999999999999999999999999999874
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-37 Score=282.10 Aligned_cols=188 Identities=39% Similarity=0.615 Sum_probs=165.9
Q ss_pred CCCChHhHHHHHhc-CCCCCCccchHHHHHHhhcCcCCCCCCCCCCCCCCCceeeecCCCCCHHHHHHHHHHHHcCCCC-
Q psy4106 1 MSPNLVFRQTVAYV-EGPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYPI- 78 (209)
Q Consensus 1 ~r~~~~~~d~W~~~-g~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~a~~~lG~~~- 78 (209)
+|+++.|||.|++. |+++|+|+||+|||+++|++.+..+......||..||+.+..+....|+..+|.++++++|++.
T Consensus 99 ~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~G~~~~ 178 (542)
T COG2303 99 VRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTT 178 (542)
T ss_pred ecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHHHHHHHHHHHHcCCCcC
Confidence 69999999999985 7899999999999999999887643211457999999999887666899999999999999998
Q ss_pred CCCCCCCCCCccccccccccchhhcccccceeeeeeccCCcccccccccccccccCCCeEEEcCeEEEEEEeeCCCCeEE
Q psy4106 79 VDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAV 158 (209)
Q Consensus 79 ~d~n~~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~R~sa~~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~ 158 (209)
.|+|+....|++.++. ++.+|+|+|+..+||+|+..++|++|++++.|++|+++ +++++
T Consensus 179 ~~~~~~~~~g~g~~~~-------------------~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~--~~r~~ 237 (542)
T COG2303 179 PDPNGADQEGFGPYCV-------------------TICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLE--GDRAV 237 (542)
T ss_pred cccccCCCCCccccee-------------------eccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEE--CCeeE
Confidence 8899998888887766 65699999999999999999999999999999999999 68999
Q ss_pred EEEEEeCCe--EEEEEeCcEEEEcCCCcccHHHHHHcCCCCcchhhcCCCccC
Q psy4106 159 GVELMKGNS--KIRVFARKEVVLSAGAINSPQILMVSGIGPREHLREKSKFFR 209 (209)
Q Consensus 159 gV~~~~~g~--~~~v~A~keVILsaGai~TP~lLl~SGIG~~~~L~~~gI~~~ 209 (209)
||++...+. ...+.+.+|||||||+|+||+|||+||||+.+.|.++||+++
T Consensus 238 gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v 290 (542)
T COG2303 238 GVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVV 290 (542)
T ss_pred EEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeee
Confidence 999986432 345556689999999999999999999999999999999874
No 6
>PLN02785 Protein HOTHEAD
Probab=99.96 E-value=1.4e-29 Score=235.32 Aligned_cols=161 Identities=26% Similarity=0.371 Sum_probs=124.3
Q ss_pred CCCChHhHHHHHhcCCCCCCccchHHHHHHhhcCcCCCCCCCCCCCCCCCceeeecCCCCCHHHHHHHHHHHHcCCCCCC
Q psy4106 1 MSPNLVFRQTVAYVEGPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYPIVD 80 (209)
Q Consensus 1 ~r~~~~~~d~W~~~g~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~a~~~lG~~~~d 80 (209)
+|+++++||+ .||+|++++|||+++|+.... .+...+....|.++++++|++.
T Consensus 143 ~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-------------------~~~~~~~~~~~~~a~~e~G~~~-- 195 (587)
T PLN02785 143 SRASTRFIQK------AGWDAKLVNESYPWVERQIVH-------------------WPKVAPWQAALRDSLLEVGVSP-- 195 (587)
T ss_pred EeCCHHHhcc------CCCCcccccchHHHHhccccc-------------------CCCcChHHHHHHHHHHHcCCCc--
Confidence 5899999964 589999999999999986321 1123567889999999999974
Q ss_pred CCCCCCCCcc--ccccccccchhhcccccceeeeeec--cCCcccccccccccccccCCCeEEEcCeEEEEEEeeCCC--
Q psy4106 81 VNGAAQTGFS--FLPVSFNSARLVMGRAWVQSVEVSM--RNGTRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKS-- 154 (209)
Q Consensus 81 ~n~~~~~G~~--~~~~~~~~~~~~~g~~~~~~~~~~~--~~g~R~sa~~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~-- 154 (209)
+|+....+.. .+.. ++ +.|.|++++. ++ +...++||+|+++++|+||+|++++
T Consensus 196 ~n~~~~d~~~G~~~g~-------------------~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~ 254 (587)
T PLN02785 196 FNGFTYDHVYGTKVGG-------------------TIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKR 254 (587)
T ss_pred cCCCCCCCccceeeeE-------------------EEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCC
Confidence 3432222221 0111 23 5689998876 44 4667899999999999999998532
Q ss_pred CeEEEEEEEe-CCeEEEE----EeCcEEEEcCCCcccHHHHHHcCCCCcchhhcCCCccC
Q psy4106 155 KRAVGVELMK-GNSKIRV----FARKEVVLSAGAINSPQILMVSGIGPREHLREKSKFFR 209 (209)
Q Consensus 155 ~~a~gV~~~~-~g~~~~v----~A~keVILsaGai~TP~lLl~SGIG~~~~L~~~gI~~~ 209 (209)
++|+||+|.+ +|+++++ +++||||||||||+||+|||+|||||+++|+++||||+
T Consensus 255 ~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv 314 (587)
T PLN02785 255 PRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVV 314 (587)
T ss_pred ceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCee
Confidence 4899999986 4655544 26689999999999999999999999999999999985
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.76 E-value=8e-18 Score=154.99 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=70.7
Q ss_pred eccCCcccccccccccccc----cCCCeEEEcCeEEEEEEeeCCC-CeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 114 SMRNGTRWSTSRAFLHPIR----RRRNLHVTKFSLVTKLIIDEKS-KRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 114 ~~~~g~R~sa~~~~L~~~~----~~~nl~i~~~~~V~rI~~~~~~-~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.|+.+.|+|+..+.+..+. +++|++|++++.|++|++++++ ++|++|.|.+ +|+.++++| |.||||||+|+|
T Consensus 202 ~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A-~~vVLAagaIet 280 (544)
T TIGR02462 202 TDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKA-DVYVLACGAVHN 280 (544)
T ss_pred CCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEEC-CEEEEccCchhh
Confidence 4667888887666675544 4899999999999999998644 6899999997 588889999 599999999999
Q ss_pred HHHHHHcCCCC
Q psy4106 187 PQILMVSGIGP 197 (209)
Q Consensus 187 P~lLl~SGIG~ 197 (209)
|+|||+|+++.
T Consensus 281 pRLLL~S~~~~ 291 (544)
T TIGR02462 281 PQILVNSGFGQ 291 (544)
T ss_pred HHHHHhCCCCC
Confidence 99999999885
No 8
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.76 E-value=7.5e-05 Score=70.17 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=51.7
Q ss_pred ccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHHH
Q psy4106 128 LHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS-PQILM 191 (209)
Q Consensus 128 L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T-P~lLl 191 (209)
|....+..|++|++++.|++|+.++ +++|+||.+..+++.++++|+|-||||+|.+.. |.+|.
T Consensus 219 l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 219 LRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 3334467899999999999999875 578999999877878889997789999999985 55554
No 9
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.74 E-value=9.7e-05 Score=68.30 Aligned_cols=64 Identities=27% Similarity=0.442 Sum_probs=51.2
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc-cHHHHHH
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN-SPQILMV 192 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~-TP~lLl~ 192 (209)
++..+..+++++|++++.|++|+.+ +++++||.+..++..++++|+|.||||+|.++ .+.++..
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~--~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~~ 243 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVE--DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRAR 243 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEec--CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHHH
Confidence 3443444579999999999999987 57999999877787888999889999999996 4555543
No 10
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.55 E-value=0.00028 Score=65.98 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=47.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
.++.+++|++++.|++|+.+ +++++||.+..+++.+.++|++.||||+|.+.+-.-|
T Consensus 218 ~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 218 LQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred HHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHH
Confidence 45678999999999999987 5799999987677778899977899999999874443
No 11
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.44 E-value=0.00042 Score=64.76 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=48.5
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS-PQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T-P~lL 190 (209)
..+.+++|++++.|++|+.+ +++++||.+..+|+.+.++|+|-||||+|.+.. +.++
T Consensus 218 ~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~ 275 (557)
T PRK12844 218 ALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMR 275 (557)
T ss_pred HHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHH
Confidence 35678999999999999987 579999999877888889997789999999986 4444
No 12
>PRK07121 hypothetical protein; Validated
Probab=97.32 E-value=0.00072 Score=62.05 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=47.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS-PQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T-P~lL 190 (209)
..+.+++|++++.|++|+.++ +++++||.+..+++.+.++|+|.||||+|.+.. |.+|
T Consensus 187 ~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 187 AAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 356789999999999999875 468999999777777789997799999999874 4444
No 13
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.22 E-value=0.0012 Score=58.92 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=43.2
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELM--KGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~--~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
+..+++|+.++.|++|+.+ +++|+||.+. .+|+.++++|+ .||||+|.+.. .++
T Consensus 152 ~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~ 207 (417)
T PF00890_consen 152 EEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELL 207 (417)
T ss_dssp HHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHH
T ss_pred hhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccc
Confidence 4456999999999999998 5699999999 57888999996 99999999999 444
No 14
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.18 E-value=0.0011 Score=62.02 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=47.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH-HHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP-QILM 191 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP-~lLl 191 (209)
..+.+++|++++.|++|+.+ +++++||.+..++.+..++|+|-||||+|.++.. .++.
T Consensus 227 ~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 227 VLRAGIPIWTETSLVRLTDD--GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHHCCCEEEecCEeeEEEec--CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 34678999999999999865 5799999887777777899988999999999854 4443
No 15
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.05 E-value=0.0021 Score=60.37 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=46.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
..+.+++|+.++.|++|+.+ +++++||.+..++...+++|+|.||||+|++..-.-|
T Consensus 227 a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 227 AEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 45678999999999999887 5799999987666666789977999999999864433
No 16
>PRK12839 hypothetical protein; Provisional
Probab=97.04 E-value=0.0018 Score=60.72 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=45.5
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS-PQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T-P~lL 190 (209)
.+.+++|++++.|++|+.++ +++++||.+...+...++.++|.||||+|++.. +.++
T Consensus 225 ~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 225 DDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHH
Confidence 45789999999999998764 579999998764444567777899999999987 4433
No 17
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.89 E-value=0.0031 Score=59.27 Aligned_cols=57 Identities=32% Similarity=0.494 Sum_probs=47.6
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc-HHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS-PQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T-P~lL 190 (209)
..+.+++|++++.|++|+.+ +++++||.+..+++.+++.|++.||||+|++.. +.+|
T Consensus 231 ~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~ 288 (578)
T PRK12843 231 LRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLR 288 (578)
T ss_pred HHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHH
Confidence 35678999999999999876 579999998777777788887899999999987 4444
No 18
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.87 E-value=0.0029 Score=57.53 Aligned_cols=63 Identities=29% Similarity=0.312 Sum_probs=50.6
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELM-KGNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~-~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
..+.+++|+.++.|++|+.+ +++++||.+. .+++...++| |.||||+|.+.++..|+.+-.++
T Consensus 141 ~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a-~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 141 AERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRA-KAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEEC-CEEEECCCCCCCCHHHHHhhcCC
Confidence 34678999999999999886 5789999885 3565667888 69999999999888777765543
No 19
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.71 E-value=0.0043 Score=56.24 Aligned_cols=52 Identities=21% Similarity=0.531 Sum_probs=42.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T 186 (209)
.++.|++|+.++.|++|+.+ +++++||....++..+.+.| |.||||+|.+..
T Consensus 139 ~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~A-k~VILAtGG~~~ 190 (433)
T PRK06175 139 KKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYS-KVTILATGGIGG 190 (433)
T ss_pred HhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEc-CeEEEccCcccc
Confidence 34679999999999999876 57899988766666667889 699999999864
No 20
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.58 E-value=0.0083 Score=56.28 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=45.7
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
..+.+++|++++.|++|+.+ +++++||.+...+....++++|.||||+|.+..-.-|
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 280 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVLACGGFSHDLAR 280 (574)
T ss_pred HHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHH
Confidence 35678999999999999987 5799999987655455688877999999999743333
No 21
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=96.45 E-value=0.0093 Score=55.93 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=43.8
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+++|+.++.|++|+.+ +++++||...+ +|+...+.| |-||||+|.++.
T Consensus 130 ~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~A-kaVILATGG~~~ 182 (565)
T TIGR01816 130 LKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRA-KAVVLATGGYGR 182 (565)
T ss_pred HhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEe-CeEEECCCCccc
Confidence 4678999999999999986 57999998864 577778889 699999999975
No 22
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.42 E-value=0.0097 Score=55.87 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=44.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+++|+.++.+++|+.++ +++++||...+ +|+.+.++| |-||||+|.++.
T Consensus 137 ~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 190 (570)
T PRK05675 137 LKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKS-KATVLATGGAGR 190 (570)
T ss_pred hccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEec-CeEEECCCCccc
Confidence 46789999999999999864 57999999864 677778888 699999999985
No 23
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.40 E-value=0.012 Score=55.62 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=42.4
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
..|++|+.++.|++|+.++ +++++||.+.+ +|....+.| |-||||+|.++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSA-DAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcC
Confidence 4589999999999999864 56999999875 466667888 699999999863
No 24
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.39 E-value=0.0054 Score=57.37 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=43.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
+++|++|+.++.|++|+.++++++++||....++....++| |-||||+|.++
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~A-kaVILATGG~~ 197 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRA-GAVILATGGGG 197 (553)
T ss_pred hcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEc-CEEEEcCCCCc
Confidence 45699999999999999874237999998877777677888 69999999974
No 25
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.31 E-value=0.012 Score=55.64 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=43.9
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+++|++++.|++|+.++ +++++||.+.+ +|..+.+.| |-||||+|.++.
T Consensus 160 ~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 213 (598)
T PRK09078 160 LKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRA-HMVVLATGGYGR 213 (598)
T ss_pred hhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEc-CEEEECCCCCcc
Confidence 45789999999999999874 47999998864 677778888 699999999985
No 26
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.24 E-value=0.013 Score=55.77 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=43.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
...|++|+.++.|++|+.+ +++++||.+.+ +|....+.| |-||||+|.++.
T Consensus 181 ~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~A-kaVVLATGG~g~ 233 (640)
T PRK07573 181 AAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTA-DAVVLATGGYGN 233 (640)
T ss_pred HhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCccc
Confidence 4678999999999999987 47999999875 466667888 699999999885
No 27
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.23 E-value=0.013 Score=54.55 Aligned_cols=53 Identities=19% Similarity=0.443 Sum_probs=43.7
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
..+.+++|++++.|++|+.++ +++++||...+ ++..+.++| |-||||+|.+..
T Consensus 144 ~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 198 (543)
T PRK06263 144 LIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYA-KATILATGGAGQ 198 (543)
T ss_pred HhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEc-CcEEECCCCCCC
Confidence 345789999999999999875 45799998765 566677888 699999999874
No 28
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.23 E-value=0.013 Score=55.04 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=51.3
Q ss_pred ccccccccccccc---ccCCCeEEEcCeEEEEEEeeCCC--CeEEEEEEEeC--CeEEEEEeCcEEEEcCCCccc
Q psy4106 119 TRWSTSRAFLHPI---RRRRNLHVTKFSLVTKLIIDEKS--KRAVGVELMKG--NSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 119 ~R~sa~~~~L~~~---~~~~nl~i~~~~~V~rI~~~~~~--~~a~gV~~~~~--g~~~~v~A~keVILsaGai~T 186 (209)
.|.+...+++.|+ +...++++++++.|++|+++.++ ++|+||++..+ ++...+.+++-|||+.|.+.+
T Consensus 220 t~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 220 TKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred CCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 4444455566664 46789999999999999996223 78999999864 344567888999999998863
No 29
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.21 E-value=0.013 Score=52.80 Aligned_cols=57 Identities=26% Similarity=0.333 Sum_probs=43.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCccc-HHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG-NSKIRVFARKEVVLSAGAINS-PQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~-g~~~~v~A~keVILsaGai~T-P~lL 190 (209)
..+.+++|+.++.|++|+.++ +++++||.+... ++...+.+ |.||||+|++.. |.++
T Consensus 140 ~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a-~~VVlAtGg~~~n~~m~ 198 (439)
T TIGR01813 140 AKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAA-KAVVLATGGFGSNKEMI 198 (439)
T ss_pred HHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEec-ceEEEecCCCCCCHHHH
Confidence 456789999999999999865 478999998754 44445566 799999998875 4443
No 30
>PLN02815 L-aspartate oxidase
Probab=96.20 E-value=0.012 Score=55.61 Aligned_cols=54 Identities=13% Similarity=0.321 Sum_probs=43.5
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCC--eEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSK--RAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~--~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+|++|+.++.|++|+.+++++ +++||.+.+ +|....+.| |-||||+|.++-
T Consensus 166 ~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 223 (594)
T PLN02815 166 KNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-KVTLLASGGAGH 223 (594)
T ss_pred HhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-ceEEEcCCccee
Confidence 345799999999999999864343 499999864 576677888 799999999873
No 31
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.17 E-value=0.016 Score=54.59 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=44.0
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
...+++|+.++.|++|+.++ +++++||...+ +|....++| |-||||+|.+..
T Consensus 154 ~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 207 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_pred hhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 45789999999999999864 57999999864 677778889 699999999975
No 32
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.09 E-value=0.025 Score=52.84 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=42.2
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEE--eC-------------CeEEEEEeCcEEEEcCCCcc-cHHHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELM--KG-------------NSKIRVFARKEVVLSAGAIN-SPQILM 191 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~--~~-------------g~~~~v~A~keVILsaGai~-TP~lLl 191 (209)
..+++|++++.+++|+.+ +++++||... .+ +...++.| |-||||+|.+. .+.+|.
T Consensus 164 ~~gv~i~~~t~~~~Li~~--~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~A-kaVILATGGf~~n~em~~ 234 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVT--DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRA-QAVIVTSGGIGGNHELVR 234 (549)
T ss_pred hCCceEEecCEeeEEEEe--CCEEEEEEEEecccccccccccccccccceEEEec-CEEEEeCCCcccCHHHHH
Confidence 457999999999999986 5799999863 11 13457888 69999999998 455543
No 33
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.08 E-value=0.018 Score=54.68 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=43.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+++|+.++.|++|+.++ +++++||.+.+ +|+.+.++| |-||||+|.++.
T Consensus 177 ~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 230 (617)
T PTZ00139 177 LKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRA-HYTVIATGGYGR 230 (617)
T ss_pred HhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEEC-CcEEEeCCCCcc
Confidence 45789999999999999843 57999998864 577778888 699999999875
No 34
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.01 E-value=0.023 Score=53.37 Aligned_cols=50 Identities=24% Similarity=0.309 Sum_probs=42.8
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~ 185 (209)
.+.+++|+.++.|++|+.+ +++++||...+ +++.+.++| |-||||+|.++
T Consensus 147 ~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~ 198 (566)
T PRK06452 147 SGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKT-KAVVLATGGMG 198 (566)
T ss_pred HhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEe-CeEEECCCccc
Confidence 3468999999999999987 57999998875 456677888 79999999998
No 35
>PRK08275 putative oxidoreductase; Provisional
Probab=95.99 E-value=0.019 Score=53.59 Aligned_cols=52 Identities=25% Similarity=0.343 Sum_probs=42.6
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~ 185 (209)
..+.+++|+.++.|++|+.++ +++++||.+.+ +|....++| |.||||+|.+.
T Consensus 147 ~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (554)
T PRK08275 147 LKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRA-KAVILCCGAAG 200 (554)
T ss_pred HHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEEC-CEEEECCCCcc
Confidence 346789999999999999864 46899998764 566667888 69999999985
No 36
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.96 E-value=0.07 Score=49.35 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=48.0
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
...+.+|++++.|+.|..+ +++++||++.+ +|+...++| +.||+|||+- +.+|+...|+
T Consensus 139 ~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 139 QEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEA-QVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CEEEECCCcc-hHHHHHhcCC
Confidence 4678999999999999876 57899998865 466677899 6999999976 6788776665
No 37
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.95 E-value=0.022 Score=54.24 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=43.9
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+++|+.++.+++|+.++ +++++||.+.+ +|+.+.+.| |-||||+|.++.
T Consensus 198 ~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 251 (635)
T PLN00128 198 MKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRA-HSTILATGGYGR 251 (635)
T ss_pred HhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEc-CeEEECCCCCcc
Confidence 35689999999999998864 47999998865 577778888 699999999985
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.86 E-value=0.026 Score=48.28 Aligned_cols=56 Identities=34% Similarity=0.472 Sum_probs=42.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
.+.+++|++++.|++|..+ +++++||+.. +| .++| +.||+|+|+ .|++|+..+|+.
T Consensus 158 ~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~-~g---~i~a-d~vV~a~G~-~s~~l~~~~~~~ 213 (358)
T PF01266_consen 158 QRAGVEIRTGTEVTSIDVD--GGRVTGVRTS-DG---EIRA-DRVVLAAGA-WSPQLLPLLGLD 213 (358)
T ss_dssp HHTT-EEEESEEEEEEEEE--TTEEEEEEET-TE---EEEE-CEEEE--GG-GHHHHHHTTTTS
T ss_pred HHhhhhccccccccchhhc--cccccccccc-cc---cccc-ceeEecccc-cceeeeeccccc
Confidence 4568999999999999998 6788888763 33 3788 699999997 789988888763
No 39
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.75 E-value=0.04 Score=52.36 Aligned_cols=48 Identities=25% Similarity=0.237 Sum_probs=40.2
Q ss_pred CeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 136 NLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 136 nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
|++|+.++.|++|+.+ +++++||.... ++....+.| |.||||+|.++.
T Consensus 165 ~v~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKD--GGRIAGAFGYWRESGRFVLFEA-PAVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEE--CCEEEEEEEEECCCCeEEEEEc-CeEEECCCcccC
Confidence 4999999999999987 57899998764 566667888 699999999764
No 40
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.74 E-value=0.017 Score=53.53 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=41.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
.+++++|+.++.|++|+.+ +++++||.+...+....+.| |.||||+|.+.
T Consensus 148 ~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~A-k~VVLATGG~~ 197 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPA-RAVVLATGGIG 197 (513)
T ss_pred hCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEEC-CEEEEcCCCCc
Confidence 3468999999999999876 57999998876555557888 69999999986
No 41
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.70 E-value=0.03 Score=53.49 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=43.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+++|+.++.|++|+.+ +++++||.+.+ +|+.+.+.| |-||||+|.++.
T Consensus 169 ~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A-kaVVLATGG~g~ 221 (657)
T PRK08626 169 IKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVA-KATLIATGGYGR 221 (657)
T ss_pred HhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccC
Confidence 4678999999999999987 57999999875 677777888 699999998873
No 42
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.57 E-value=0.035 Score=51.73 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=43.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeC----CCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDE----KSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~----~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+|++|+.++.|++|+.++ ++++++||.+.+ +++...+.| |-||||+|.+..
T Consensus 149 ~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVlATGG~~~ 208 (536)
T PRK09077 149 RNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-KFVVLATGGASK 208 (536)
T ss_pred HhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-CeEEECCCCCCC
Confidence 346799999999999998763 137999999875 466677888 699999999873
No 43
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.53 E-value=0.042 Score=55.88 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=43.5
Q ss_pred CCeEEEcCeEEEEEEeeCC----C---CeEEEEEEEe----CCeEEEEEeCcEEEEcCCCcccH
Q psy4106 135 RNLHVTKFSLVTKLIIDEK----S---KRAVGVELMK----GNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 135 ~nl~i~~~~~V~rI~~~~~----~---~~a~gV~~~~----~g~~~~v~A~keVILsaGai~TP 187 (209)
.+++|++++.|++|+.+++ + ++|+||.+.+ +|+...+.| |-||||+|.++.-
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-kaVILATGGf~~N 622 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-DAVILATGGFSND 622 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-ceEEEecCCcccC
Confidence 5899999999999998742 2 3899999985 566778888 7999999999863
No 44
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.46 E-value=0.053 Score=51.14 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=41.2
Q ss_pred CCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 135 RNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 135 ~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+++|+.++.+++|+.++ +++++||...+ +++.+.+.| |-||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDD-EGVCRGIVAQDLFTMEIESFPA-DAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECC-CCEEEEEEEEECCCCcEEEEEC-CEEEECCCCCcC
Confidence 348999999999999864 57999999875 455566778 699999999885
No 45
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.44 E-value=0.05 Score=50.32 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=43.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccH-HHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG-NSKIRVFARKEVVLSAGAINSP-QILM 191 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~-g~~~~v~A~keVILsaGai~TP-~lLl 191 (209)
...+++|++++.|++|..+ +++++||.+... ++..+++| |.||||+|.+... .+|.
T Consensus 201 ~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a-~~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 201 QERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISS-KAVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEec-CeEEEeCCCcccCHHHHH
Confidence 4568999999999999865 578999988653 45567888 6999999988754 4443
No 46
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=95.43 E-value=0.053 Score=51.09 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=42.5
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
+.+|++++.++.|++|+.+ +++++||.... +|....++| |-||||.|.+..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEC-CEEEECCCCCcC
Confidence 4468999999999999987 57999998764 566677888 699999999774
No 47
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.43 E-value=0.048 Score=51.36 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=42.9
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
..+|++++.++.|++|+.+ +++++||...+ +|....+.| |-||||+|.+..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVD--DGRVCGLVAIEMAEGRLVTILA-DAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEee--CCEEEEEEEEEcCCCcEEEEec-CEEEEcCCCCcc
Confidence 4468999999999999987 57999998764 576677888 699999999874
No 48
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.41 E-value=0.054 Score=50.91 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=42.6
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
..+.|++|++++.|++|+.+ +++++||.... +++.+.++| |-||||+|++..
T Consensus 145 ~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVVlATGG~~~ 198 (575)
T PRK05945 145 LRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRA-KAVMFATGGYGR 198 (575)
T ss_pred HhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CEEEECCCCCcC
Confidence 34678999999999999886 57899998653 566667888 699999999863
No 49
>KOG2404|consensus
Probab=95.41 E-value=0.017 Score=50.53 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=40.9
Q ss_pred CeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc
Q psy4106 136 NLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 136 nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~T 186 (209)
-++|+++++|.+|+-+ .+++.||+|++ +|++..+.. ..||+|.|.++-
T Consensus 159 ~~ki~~nskvv~il~n--~gkVsgVeymd~sgek~~~~~-~~VVlatGGf~y 207 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRN--NGKVSGVEYMDASGEKSKIIG-DAVVLATGGFGY 207 (477)
T ss_pred HHhhhhcceeeeeecC--CCeEEEEEEEcCCCCccceec-CceEEecCCcCc
Confidence 4899999999999944 68999999997 577777777 499999999984
No 50
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.38 E-value=0.044 Score=50.39 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=41.7
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T 186 (209)
.+|++|+.++.|++|+.+ +++++||.....+....++| |.||||+|++..
T Consensus 141 ~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A-~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHA-DAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEc-CEEEECCCcccC
Confidence 479999999999999876 46899998876555556788 699999999874
No 51
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.36 E-value=0.047 Score=51.07 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=42.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+++|+.++.|++|+.+ +++++||.+.+ +|....++| |-||||+|.+..
T Consensus 140 ~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VVlAtGG~~~ 192 (566)
T TIGR01812 140 LKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRA-KAVVLATGGYGR 192 (566)
T ss_pred HHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEEC-CeEEECCCcccC
Confidence 3458999999999999987 57999998864 566667888 699999999863
No 52
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.16 E-value=0.064 Score=50.65 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=42.9
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
...+++++.++.|++|+.++ +++++||.+.+ +|+...+.| |-||||+|.+..
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~~ 212 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEA-KTTLFATGGAGR 212 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEEC-CeEEECCCCccc
Confidence 45789999999999999864 47899998864 566667778 699999999874
No 53
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.09 E-value=0.023 Score=52.07 Aligned_cols=57 Identities=30% Similarity=0.404 Sum_probs=44.9
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCC-eEEEEEeCcEEEEcCCCcc
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGN-SKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g-~~~~v~A~keVILsaGai~ 185 (209)
++..+.+++|++|+.++.+.+|+.++ +..+.||.+.+.+ +...++| +.||||+|.++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a-~~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRA-KAVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEec-CeEEEecCCCc
Confidence 34445677999999999999999984 3355599988654 4677888 69999999886
No 54
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.07 E-value=0.062 Score=50.58 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=43.4
Q ss_pred ccCCCeEEEcCeEEEEEEeeCC--CCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEK--SKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~--~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
....|++|+.++.|++|+.+++ +++++||.... +++.+.++| |-||||+|.+..
T Consensus 150 ~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 207 (583)
T PRK08205 150 CVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-KAVVFATGGSGR 207 (583)
T ss_pred HHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-CeEEECCCCCcc
Confidence 3467899999999999998741 17999998763 566667888 699999999873
No 55
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.07 E-value=0.066 Score=50.31 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=41.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~ 185 (209)
+..+++|+.++.|++|+.+ +++++||.+.+ +++...+.| |-||||+|.+.
T Consensus 149 ~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-k~VIlATGG~~ 200 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVE--NGVFKGVTAIDLKRGEFKVFQA-KAGIIATGGAG 200 (577)
T ss_pred hcCCCEEEECCEEEEEEEE--CCEEEEEEEEEcCCCeEEEEEC-CcEEEcCchhc
Confidence 3478999999999999887 57999998764 566667888 69999999985
No 56
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.94 E-value=0.073 Score=47.98 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=41.1
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~ 188 (209)
..+.+.+|++++.|++|+.++++++++||....++ ..+.| |.||||+|.+....
T Consensus 133 a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~a-k~VIlAtGG~~~n~ 186 (432)
T TIGR02485 133 AERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITT-QALVLAAGGLGANR 186 (432)
T ss_pred HHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEc-CEEEEcCCCcccCH
Confidence 35678999999999999876324688898764333 46778 69999999887644
No 57
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.92 E-value=0.099 Score=47.82 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=47.8
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
...++|++|..++.|+.|.-..++.=.+-|.-..+|.+.+++| |-|+|.||+- +=.||+.|||.
T Consensus 191 l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a-~FVfvGAGG~-aL~LLqksgi~ 254 (488)
T PF06039_consen 191 LQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRA-KFVFVGAGGG-ALPLLQKSGIP 254 (488)
T ss_pred HHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEEC-CEEEECCchH-hHHHHHHcCCh
Confidence 3456799999999999998765322222333234677889999 6999999985 77789999994
No 58
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.88 E-value=0.086 Score=49.94 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=40.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~ 185 (209)
+..|++|+.++.|+.|+.+ +++++||.... ++....+.| |.||||+|.+.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVD--DNRIAGAVGFSVRENKFYVFKA-KAVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEe--CCEEEEEEEEEccCCcEEEEEC-CEEEECCCchh
Confidence 3456999999999999887 46899997653 565567888 69999999886
No 59
>PRK08071 L-aspartate oxidase; Provisional
Probab=94.59 E-value=0.088 Score=48.77 Aligned_cols=49 Identities=29% Similarity=0.424 Sum_probs=41.4
Q ss_pred CCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc
Q psy4106 135 RNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 135 ~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~T 186 (209)
.+++|+.++.|++|+.+ +++++||...+ +++.+.++| |.||||+|.+..
T Consensus 142 ~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~g~~~~i~A-k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIE--NGRCIGVLTKDSEGKLKRYYA-DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeec--CCEEEEEEEEECCCcEEEEEc-CeEEEecCCCcc
Confidence 68999999999999876 57899998876 466667888 699999999874
No 60
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.58 E-value=0.15 Score=47.62 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=46.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
...+.+|++++.|+.|..+ +++++||.+.+ +++...++| +.||+|||+. +.+|+...|+
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A-~~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHA-PVVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred HhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEEC-CEEEECCChh-HHHHHHhcCC
Confidence 4678999999999999876 57899999865 455567899 5999999975 6777765553
No 61
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.47 E-value=0.13 Score=50.95 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=41.4
Q ss_pred CCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 135 RNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 135 ~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.++.+.+++.+.+|+.+ +++++||...+ +|+.+.++| |-||||+|.++.
T Consensus 156 ~~i~~~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~A-kaVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTE--GGRAVGAAALNTRTGEFVTVGA-KAVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEee--CCEEEEEEEEecCCCcEEEEEC-CEEEECCCcccc
Confidence 57999999999999876 57999999864 577778888 799999999863
No 62
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.41 E-value=0.022 Score=45.28 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=37.9
Q ss_pred ccccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy4106 126 AFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSG 194 (209)
Q Consensus 126 ~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SG 194 (209)
.||.....+.+++|+.++.|++|..++ ++ .-|++. ++ .+++| +.||||.|....|+++..-|
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~--~~-w~v~~~-~~--~~~~a-~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDG--DG-WTVTTR-DG--RTIRA-DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEET--TT-EEEEET-TS---EEEE-EEEEE---SSCSB---S-TT
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEec--cE-EEEEEE-ec--ceeee-eeEEEeeeccCCCCcccccc
Confidence 366555567788899999999999885 33 334442 34 45778 59999999999999987666
No 63
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=94.41 E-value=0.18 Score=48.02 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=46.5
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMVSG 194 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~SG 194 (209)
.+.+.+|+.++.|+.|..+++++++++|.+.+ +++.+++++ +.||+|||+. +..|+...|
T Consensus 243 ~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a-~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 243 ALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYA-KVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEe-CEEEECCCHh-HHHHHHhcc
Confidence 46789999999999998763136789998865 455667889 6999999987 666766554
No 64
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=94.37 E-value=0.15 Score=48.37 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=41.2
Q ss_pred CCeEEEcCeEEEEEEeeCCC-CeEEEEEEEe--CCeEEEEEeCcEEEEcCCCccc
Q psy4106 135 RNLHVTKFSLVTKLIIDEKS-KRAVGVELMK--GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 135 ~nl~i~~~~~V~rI~~~~~~-~~a~gV~~~~--~g~~~~v~A~keVILsaGai~T 186 (209)
.+.+|+.++.|++|+.++++ ++++||.+.+ +|+.+.+.| |-||||+|.+..
T Consensus 139 ~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~A-kaVVLATGG~~~ 192 (614)
T TIGR02061 139 ALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKA-KTVIVAAGGAVN 192 (614)
T ss_pred CCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEEC-CEEEECCCcccc
Confidence 44699999999999986422 6999998864 576677888 699999999863
No 65
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.26 E-value=0.12 Score=48.35 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=40.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE-----eCCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELM-----KGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~-----~~g~~~~v~A~keVILsaGai~ 185 (209)
.+.+++|+.++.|++|+.++ +++++||.+. .++....+.| |-||||+|.+.
T Consensus 155 ~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~A-k~VIlATGG~~ 210 (541)
T PRK07804 155 RADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHA-PAVVLATGGLG 210 (541)
T ss_pred HhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEc-CeEEECCCCCC
Confidence 45569999999999999874 4699999876 2233456788 69999999976
No 66
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=93.71 E-value=0.27 Score=44.70 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=43.8
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCCc
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGPR 198 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~~ 198 (209)
..|.+|..++.|+.|....+ + ++-+. ..+|++. ++| |-||.||| ..+-.|++++|+.+.
T Consensus 165 ~~g~~i~ln~eV~~i~~~~d-g-~~~~~-~~~g~~~-~~a-k~Vin~AG-l~Ad~la~~~g~~~~ 223 (429)
T COG0579 165 ANGVELRLNTEVTGIEKQSD-G-VFVLN-TSNGEET-LEA-KFVINAAG-LYADPLAQMAGIPED 223 (429)
T ss_pred HcCCEEEecCeeeEEEEeCC-c-eEEEE-ecCCcEE-EEe-eEEEECCc-hhHHHHHHHhCCCcc
Confidence 45999999999999988753 3 21121 2356555 888 69999998 568889999999874
No 67
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.69 E-value=0.51 Score=43.65 Aligned_cols=60 Identities=23% Similarity=0.191 Sum_probs=42.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
...+++|+.++.|+.|..++ ++++ .|...+ +|...++.| +.||+|||+- +..|+..+|+.
T Consensus 195 ~~Ggv~i~~~teV~~I~~~~-dg~~-~v~~~~~~~G~~~~i~A-~~VVvaAGg~-s~~L~~~~Gi~ 256 (494)
T PRK05257 195 KQGNFELQLGHEVRDIKRND-DGSW-TVTVKDLKTGEKRTVRA-KFVFIGAGGG-ALPLLQKSGIP 256 (494)
T ss_pred hCCCeEEEeCCEEEEEEECC-CCCE-EEEEEEcCCCceEEEEc-CEEEECCCcc-hHHHHHHcCCC
Confidence 33459999999999998754 3332 343332 354345888 5999999984 67788888885
No 68
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.63 E-value=0.36 Score=43.81 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=43.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVS 193 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~S 193 (209)
.+.+.+++.++.|+++.++ ++++++|... +++...+.|+ .||||+|+.-|..|+...
T Consensus 274 ~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~-~g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 274 EQLGGVMLPGDRVLRAEFE--GNRVTRIHTR-NHRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHCCCEEEECcEEEEEEee--CCeEEEEEec-CCccceEECC-EEEEccCCCcCHHHHhhc
Confidence 4567899999999999987 5788887643 3334468885 899999999888876554
No 69
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=92.43 E-value=0.47 Score=44.01 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=40.7
Q ss_pred CeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 136 NLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 136 nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
+++|++++.|+.|..+ ++....|.. .+| .++| +.||+|||+- |..|+..+|++.
T Consensus 231 ~v~i~~~t~V~~I~~~--~~~~~~V~T-~~G---~i~A-~~VVvaAG~~-S~~La~~~Gi~~ 284 (497)
T PTZ00383 231 KISINLNTEVLNIERS--NDSLYKIHT-NRG---EIRA-RFVVVSACGY-SLLFAQKMGYGL 284 (497)
T ss_pred CEEEEeCCEEEEEEec--CCCeEEEEE-CCC---EEEe-CEEEECcChh-HHHHHHHhCCCC
Confidence 3899999999999865 234445543 234 4788 5999999975 888999999863
No 70
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.36 E-value=0.26 Score=45.99 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=48.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
...+.+|++.+.|+++..+ ++ ++||++.+ +|+++.++| +.||-|||.- +-+|+...+..+
T Consensus 175 ~~~Ga~il~~~~v~~~~re--~~-v~gV~~~D~~tg~~~~ira-~~VVNAaGpW-~d~i~~~~~~~~ 236 (532)
T COG0578 175 AEHGAEILTYTRVESLRRE--GG-VWGVEVEDRETGETYEIRA-RAVVNAAGPW-VDEILEMAGLEQ 236 (532)
T ss_pred Hhcccchhhcceeeeeeec--CC-EEEEEEEecCCCcEEEEEc-CEEEECCCcc-HHHHHHhhcccC
Confidence 4678899999999999987 45 99999986 588999999 5999999976 455666655443
No 71
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.74 E-value=0.43 Score=43.30 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=41.7
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~l 189 (209)
...+.+.+|++++.|+++..+ +++++.|. ..+++...+.| +.||||+|.+.+.-|
T Consensus 268 ~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~-~~~g~~~~i~A-D~VVLAtGrf~s~GL 322 (422)
T PRK05329 268 AFERLGGRIMPGDEVLGAEFE--GGRVTAVW-TRNHGDIPLRA-RHFVLATGSFFSGGL 322 (422)
T ss_pred HHHhCCCEEEeCCEEEEEEEe--CCEEEEEE-eeCCceEEEEC-CEEEEeCCCcccCce
Confidence 345678999999999999877 45666665 34566667888 599999999876544
No 72
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=91.68 E-value=0.77 Score=42.34 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=42.8
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELM--KGNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~--~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
...+++|+.++.|+.|..++ ++.+ .|... ++|...+++| +.||+|||+- +..|+...|+..
T Consensus 189 ~~~Gv~i~~~t~V~~i~~~~-~~~v-~v~~~~~~~g~~~~i~A-~~VV~AAG~~-s~~La~~~Gi~~ 251 (483)
T TIGR01320 189 VQNGTTIRFGHEVRNLKRQS-DGSW-TVTVKNTRTGGKRTLNT-RFVFVGAGGG-ALPLLQKSGIPE 251 (483)
T ss_pred HhCCCEEEeCCEEEEEEEcC-CCeE-EEEEeeccCCceEEEEC-CEEEECCCcc-hHHHHHHcCCCc
Confidence 45689999999999997653 2222 23332 2344456888 5999999975 677888888863
No 73
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=91.37 E-value=0.92 Score=42.10 Aligned_cols=67 Identities=21% Similarity=0.145 Sum_probs=44.5
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELM--KGNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~--~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
|+..+....+++|+.++.|+.|..++ ++.. -|.+. .+++..+++| +.||+|||+ .+-+|+..+|+..
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w-~v~v~~t~~g~~~~i~A-d~VV~AAGa-wS~~La~~~Gi~~ 258 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLS-DGGW-EVTVKDRNTGEKREQVA-DYVFIGAGG-GAIPLLQKSGIPE 258 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECC-CCCE-EEEEEecCCCceEEEEc-CEEEECCCc-chHHHHHHcCCCc
Confidence 44333345689999999999997652 2222 23332 2343335788 599999997 5688888998854
No 74
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=90.94 E-value=0.71 Score=41.53 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=36.0
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
...+|++|+ +..|+.|..+ +++++||... +|. .+.+ +-|||++|++.
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e--~~~v~GV~~~-~g~--~~~a-~~vVlaTGtfl 152 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVE--NGKVKGVVTK-DGE--EIEA-DAVVLATGTFL 152 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEEC--TTEEEEEEET-TSE--EEEE-CEEEE-TTTGB
T ss_pred hcCCCeEEE-EcccceEEec--CCeEEEEEeC-CCC--EEec-CEEEEeccccc
Confidence 357999997 6799999988 5899998764 564 5778 69999999944
No 75
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=90.75 E-value=0.61 Score=42.68 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=41.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC--CeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG--NSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~--g~~~~v~A~keVILsaGai~TP~lL 190 (209)
+..+.+|++++.|++|+.+ ++++++|...++ +....+.| +.||+++-.-.+.+||
T Consensus 243 ~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~~~~~~~~~~~~a-d~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTK--GGRAGWVVVVDSRKQEDLNVKA-DDVVANLPPQSLLELL 299 (492)
T ss_pred HhcCCEEeCCceEEEEEEe--CCeEEEEEEecCCCCceEEEEC-CEEEECCCHHHHHHhc
Confidence 4467899999999999987 467889887643 22245778 5899999887666654
No 76
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=90.56 E-value=0.076 Score=48.00 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
.|.......|++|+.++.|..+..+ ++++++|.+...+...+++| |.||-|.| .-.|+-++|+
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~--~~~i~~V~~~~~~g~~~i~A-~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRD--GGRITGVIVETKSGRKEIRA-KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--cccccccccccccccccccc-cccccccc---cccccccccc
Confidence 3433445689999999999999987 67899999986434778999 59999999 3577777764
No 77
>PLN02661 Putative thiazole synthesis
Probab=89.65 E-value=0.66 Score=41.20 Aligned_cols=52 Identities=25% Similarity=0.211 Sum_probs=39.9
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE------e-CC----eEEEEEeCcEEEEcCCCcc
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELM------K-GN----SKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~------~-~g----~~~~v~A~keVILsaGai~ 185 (209)
+..++|++|+.++.|+.|+.+ ++++.||.+. . .+ ....++| |-||||+|.-+
T Consensus 182 a~~~~gVkI~~~t~V~DLI~~--~grVaGVVvnw~~v~~~~~~~s~~dp~~I~A-kaVVlATGh~g 244 (357)
T PLN02661 182 LLARPNVKLFNAVAAEDLIVK--GDRVGGVVTNWALVAQNHDTQSCMDPNVMEA-KVVVSSCGHDG 244 (357)
T ss_pred HHhcCCCEEEeCeEeeeEEec--CCEEEEEEeecchhhhccCCCCccceeEEEC-CEEEEcCCCCC
Confidence 445789999999999999987 5789999852 1 11 2346888 69999999654
No 78
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=89.13 E-value=0.72 Score=42.32 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=41.4
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
.++.+.+|++++.|++|..+ ++++.+|... +|+ ++.| +.||+++|...+=..|+
T Consensus 239 ~~~~G~~i~~~~~V~~I~~~--~~~~~gv~~~-~g~--~~~a-d~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 239 LEKHGGQIRYRARVTKIILE--NGKAVGVKLA-DGE--KIYA-KRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHCCCEEEeCCeeeEEEec--CCcEEEEEeC-CCC--EEEc-CEEEECCChHHHHHHhC
Confidence 45678999999999999987 5688898764 443 4677 58999999877665443
No 79
>PRK06185 hypothetical protein; Provisional
Probab=89.06 E-value=1.4 Score=39.02 Aligned_cols=60 Identities=23% Similarity=0.194 Sum_probs=43.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
..++++++.++.|+.+..+ ++++++|.+..++.+.++++ +-||.|.|+- |. +-...||..
T Consensus 120 ~~~~v~i~~~~~v~~~~~~--~~~v~~v~~~~~~g~~~i~a-~~vI~AdG~~-S~-vr~~~gi~~ 179 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEE--GGRVTGVRARTPDGPGEIRA-DLVVGADGRH-SR-VRALAGLEV 179 (407)
T ss_pred hCCCcEEEeCCEEEEEEEe--CCEEEEEEEEcCCCcEEEEe-CEEEECCCCc-hH-HHHHcCCCc
Confidence 3568999999999999877 46788888765333356888 5999999975 43 445556654
No 80
>KOG0042|consensus
Probab=88.75 E-value=0.15 Score=47.47 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=54.0
Q ss_pred eccCCcccccccccccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 114 SMRNGTRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 114 ~~~~g~R~sa~~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~ 188 (209)
+..+.+|.....+ |. +.+.+..++-.+.|.+++.++ ++++.|+++++ +|+++.++| |-||=|+|-+.---
T Consensus 219 GQ~nDaRmnl~vA-lT--A~r~GA~v~Nh~ev~~Llkd~-~~kv~Ga~~rD~iTG~e~~I~A-k~VVNATGpfsDsI 290 (680)
T KOG0042|consen 219 GQHNDARMNLAVA-LT--AARNGATVLNHVEVVSLLKDK-DGKVIGARARDHITGKEYEIRA-KVVVNATGPFSDSI 290 (680)
T ss_pred CCCchHHHHHHHH-HH--HHhcchhhhhHHHHHHHhhCC-CCceeeeEEEEeecCcEEEEEE-EEEEeCCCCccHHH
Confidence 3345566654432 22 347889999999999999887 57899999997 699999999 79999999885443
No 81
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=88.71 E-value=0.87 Score=38.40 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=38.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC-----C---eEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG-----N---SKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~-----g---~~~~v~A~keVILsaGai~ 185 (209)
...+++|+.++.|+.|..++ ++++.||.+... + ...+++| |-||+|+|.-.
T Consensus 115 ~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~A-k~VI~ATG~~a 173 (257)
T PRK04176 115 IDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEA-KAVVDATGHDA 173 (257)
T ss_pred HHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEc-CEEEEEeCCCc
Confidence 45789999999999998864 448999876421 1 2357889 69999999643
No 82
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=88.42 E-value=0.95 Score=38.61 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=37.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
...+++++.++.|+.|..+ ++++++|.. .+| +++| +.||+|+|+- |+.|+
T Consensus 148 ~~~g~~~~~~~~v~~i~~~--~~~~~~v~~-~~g---~~~a-~~vV~a~G~~-~~~l~ 197 (337)
T TIGR02352 148 EKLGVEIIEHTEVQHIEIR--GEKVTAIVT-PSG---DVQA-DQVVLAAGAW-AGELL 197 (337)
T ss_pred HHcCCEEEccceEEEEEee--CCEEEEEEc-CCC---EEEC-CEEEEcCChh-hhhcc
Confidence 4568999999999999876 567777763 233 4778 5999999974 44443
No 83
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=88.09 E-value=1.4 Score=39.01 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=40.3
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
..+.+.+++.++.|+.|..++ ++++++|... +| .+.+ +.||+|||+- ++.++...|+
T Consensus 193 a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~-~g---~i~a-~~vVvaagg~-~~~l~~~~g~ 249 (407)
T TIGR01373 193 ADRRGVDIIQNCEVTGFIRRD-GGRVIGVETT-RG---FIGA-KKVGVAVAGH-SSVVAAMAGF 249 (407)
T ss_pred HHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeC-Cc---eEEC-CEEEECCChh-hHHHHHHcCC
Confidence 346789999999999997543 3566666542 34 4778 5899999995 4556665565
No 84
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=87.88 E-value=1.1 Score=41.03 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=42.0
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVS 193 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~S 193 (209)
.+.+.+|++++.|++|..+ ++++++|+.. +|+ ++.| +.||++++...+-..|+-.
T Consensus 230 ~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~-~g~--~~~a-d~VI~a~~~~~~~~~l~~~ 284 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETE--GGRATAVHLA-DGE--RLDA-DAVVSNADLHHTYRRLLPN 284 (502)
T ss_pred HHCCCEEEECCeEEEEEee--CCEEEEEEEC-CCC--EEEC-CEEEECCcHHHHHHHhcCc
Confidence 4567899999999999987 4688888764 343 3677 5899999988887766533
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=87.16 E-value=2.1 Score=39.69 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=40.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
...+++++.++.|+.|..+ ++ .++|.+.+ +|+..+++| +.||+|+|+. +.+|+.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~ 221 (508)
T PRK12266 166 AERGAEILTRTRVVSARRE--NG-LWHVTLEDTATGKRYTVRA-RALVNAAGPW-VKQFLD 221 (508)
T ss_pred HHcCCEEEcCcEEEEEEEe--CC-EEEEEEEEcCCCCEEEEEc-CEEEECCCcc-HHHHHh
Confidence 4678999999999998765 33 35677664 466678899 6999999975 556654
No 86
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=86.62 E-value=2.1 Score=37.92 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=37.5
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMV 192 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~ 192 (209)
..+.+.+|++++.|+.|..+ ++++++|... ++ ++++ +.||+|+|+. ++.|+..
T Consensus 211 ~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~---~~~a-~~VV~a~G~~-~~~l~~~ 263 (416)
T PRK00711 211 AEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GG---VITA-DAYVVALGSY-STALLKP 263 (416)
T ss_pred HHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-Cc---EEeC-CEEEECCCcc-hHHHHHH
Confidence 34678999999999999876 4566666432 22 4778 6999999985 4555543
No 87
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=86.19 E-value=1.4 Score=39.80 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=35.7
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC-Ce-EEEEEeCcEEEEcCCC
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG-NS-KIRVFARKEVVLSAGA 183 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~-g~-~~~v~A~keVILsaGa 183 (209)
..+.+|++++.|++|..++ +++++||++.++ ++ .+++.+ +.||+++..
T Consensus 225 ~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a-~~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTA-DAYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCceeEEEC-CEEEEcCCH
Confidence 3467999999999998754 567889988643 22 235777 589998865
No 88
>KOG4254|consensus
Probab=85.73 E-value=0.62 Score=42.69 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=42.2
Q ss_pred ccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy4106 128 LHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 128 L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP 187 (209)
+.+.+.+.+.+|.|.+.|.+|++| +++|+||.+. +|+ ++++ |.||=-|+-..|=
T Consensus 270 ia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~-dG~--ev~s-k~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 270 IAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLA-DGT--EVRS-KIVVSNATPWDTF 323 (561)
T ss_pred HHHHHHhccceeeehhhhhheecc--CCeEEEEEec-CCc--EEEe-eeeecCCchHHHH
Confidence 334567889999999999999999 5899999987 453 4667 6777777776665
No 89
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=84.85 E-value=2.2 Score=39.14 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=41.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCC--CC-eEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEK--SK-RAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~--~~-~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
++.+.+|++++.|++|..+.. +. ++++|.+.+++....+.| +.||++..+-...+||
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~a-D~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKA-DAYVAACDVPGIKRLL 289 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEEC-CEEEECCChHHHHhhC
Confidence 456789999999999998642 22 488888753321234677 4899999988877776
No 90
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=84.54 E-value=3.3 Score=37.08 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=35.9
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~l 189 (209)
..++.|++|++++.|+.| ++ +. ..|... .+. ..++| +.||||+|..-.|++
T Consensus 95 ~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~-~~~-~~~~a-~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 95 RLAEQGVQFHTRHRWIGW--QG--GT-LRFETP-DGQ-STIEA-DAVVLALGGASWSQL 145 (376)
T ss_pred HHHHCCCEEEeCCEEEEE--eC--Cc-EEEEEC-CCc-eEEec-CEEEEcCCCcccccc
Confidence 456789999999999999 42 22 345442 221 24778 599999999877754
No 91
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=84.34 E-value=3.6 Score=36.41 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=40.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
...+.+++.++.|+.|..++ +.+ .|+. .++ ++.+ +.||+|+|+ .++.++...|+.
T Consensus 160 ~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~-~~g---~i~a-d~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 160 QARGGEIRLGAEVTALDEHA--NGV-VVRT-TQG---EYEA-RTLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HhCCCEEEcCCEEEEEEecC--CeE-EEEE-CCC---EEEe-CEEEECCCc-chHHHHHHhCCC
Confidence 45689999999999987653 332 3433 233 4778 599999997 688888888875
No 92
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=84.32 E-value=2.2 Score=38.47 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=42.3
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
+|.....+.+++|+.++.|+.|..+ ++++++|. .++. ++.| +-||+|.|+ + ..+....|+..
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~--~~g~--~i~A-~~VI~A~G~-~-s~l~~~lgl~~ 174 (428)
T PRK10157 113 WLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE--ADGD--VIEA-KTVILADGV-N-SILAEKLGMAK 174 (428)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE--cCCc--EEEC-CEEEEEeCC-C-HHHHHHcCCCC
Confidence 4433345678999999999999876 45666654 2443 4788 599999997 3 45555556653
No 93
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=84.31 E-value=1.1 Score=42.70 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=38.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
.+.+|++++.+ .|+.+..++ +++++||... +|. .+.| +.||||+|++-...++.
T Consensus 107 e~~pgV~Ile~-~Vv~li~e~-~g~V~GV~t~-~G~--~I~A-d~VILATGtfL~g~ihi 160 (617)
T TIGR00136 107 ENQPNLSLFQG-EVEDLILED-NDEIKGVVTQ-DGL--KFRA-KAVIITTGTFLRGKIHI 160 (617)
T ss_pred HcCCCcEEEEe-EEEEEEEec-CCcEEEEEEC-CCC--EEEC-CEEEEccCcccCCCEEe
Confidence 35678998755 678887653 4688999875 343 5788 59999999997554443
No 94
>PRK08401 L-aspartate oxidase; Provisional
Probab=83.60 E-value=3 Score=38.10 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=35.6
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T 186 (209)
..+.+++++.. .|+.|+.+ +++++||.. ++. .+.+ +.||||+|++..
T Consensus 130 ~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~--~g~--~i~a-~~VVLATGG~~~ 176 (466)
T PRK08401 130 ARELGVNFIRG-FAEELAIK--NGKAYGVFL--DGE--LLKF-DATVIATGGFSG 176 (466)
T ss_pred HHhcCCEEEEe-EeEEEEee--CCEEEEEEE--CCE--EEEe-CeEEECCCcCcC
Confidence 34578899876 78888765 578889876 343 4778 699999999875
No 95
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=83.53 E-value=2.6 Score=40.17 Aligned_cols=46 Identities=33% Similarity=0.432 Sum_probs=35.9
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
..+|++|+ ++.|+.|..+ +++++||... +| ..+.| +.||+|+|++-
T Consensus 112 ~~~nV~I~-q~~V~~Li~e--~grV~GV~t~-dG--~~I~A-k~VIlATGTFL 157 (618)
T PRK05192 112 NQPNLDLF-QGEVEDLIVE--NGRVVGVVTQ-DG--LEFRA-KAVVLTTGTFL 157 (618)
T ss_pred cCCCcEEE-EeEEEEEEec--CCEEEEEEEC-CC--CEEEC-CEEEEeeCcch
Confidence 46799985 6779999887 5789999874 45 35788 69999999864
No 96
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.48 E-value=4.1 Score=37.59 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=40.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG-NSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~-g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
...+.+++.++.|+.|..+ ++ ..+|...+. |++.+++| +.||.|+|+- +.+|+.
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~--~~-~~~v~~~~~~g~~~~i~a-~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 166 AERGATILTRTRCVSARRE--GG-LWRVETRDADGETRTVRA-RALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHCCCEEecCcEEEEEEEc--CC-EEEEEEEeCCCCEEEEEe-cEEEECCCcc-HHHHHh
Confidence 4678999999999999865 33 356766553 66678999 6999999975 556654
No 97
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=81.33 E-value=1.5 Score=41.35 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=42.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~ 185 (209)
+..++++..+..|++|+.++ ++.+.||...+ +++.+.++| |.||||.|+.+
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~-~~~v~Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDD-GGGVAGVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred HhhcchhhhhhhhhhheecC-CCcEEEEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 34778999999999999885 34488988775 577777888 79999999988
No 98
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=80.61 E-value=4.6 Score=36.55 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=32.6
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~ 188 (209)
..+.+++|.+++.|..|..+ ++.+..|+. .++ ..+.+ +.||||+|..--|+
T Consensus 119 l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~-~~~--~~~~a-~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 119 LKRLGVEIHFNTRVKSIEKK--EDGVFGVKT-KNG--GEYEA-DAVILATGGKSYPK 169 (409)
T ss_dssp HHHHT-EEE-S--EEEEEEE--TTEEEEEEE-TTT--EEEEE-SEEEE----SSSGG
T ss_pred HHHcCCEEEeCCEeeeeeec--CCceeEeec-cCc--ccccC-CEEEEecCCCCccc
Confidence 35688999999999999887 456777776 233 35778 69999999888776
No 99
>PRK07208 hypothetical protein; Provisional
Probab=80.32 E-value=4.6 Score=36.68 Aligned_cols=55 Identities=20% Similarity=0.035 Sum_probs=37.3
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
..+.+|++++.|++|..++ ++.+++|.+.. +|+...+.| +.||++.-.-....+|
T Consensus 230 ~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~a-d~VI~a~p~~~l~~~l 285 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTA-DQVISSMPLRELVAAL 285 (479)
T ss_pred HcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEc-CEEEECCCHHHHHHhc
Confidence 4467999999999999875 34455665543 355456778 5888877654444443
No 100
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=79.94 E-value=3.9 Score=34.44 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=40.9
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC-----C---eEEEEEeCcEEEEcCCCc-ccHHHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG-----N---SKIRVFARKEVVLSAGAI-NSPQILMV 192 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~-----g---~~~~v~A~keVILsaGai-~TP~lLl~ 192 (209)
...+++|+.++.|+.|.++++..+++||..... + ....++| |-||.|+|.- .-.++|.+
T Consensus 111 ~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~A-k~VVdATG~~a~v~~~l~~ 178 (254)
T TIGR00292 111 LQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRS-RVVVDATGHDAEIVAVCAK 178 (254)
T ss_pred HHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEc-CEEEEeecCCchHHHHHHH
Confidence 345799999999999998752237999987421 1 2467889 6999999932 33444433
No 101
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=79.93 E-value=4.5 Score=35.89 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=36.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCe--EEEEEeCcEEEEcCCCcccHHHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNS--KIRVFARKEVVLSAGAINSPQILMV 192 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~--~~~v~A~keVILsaGai~TP~lLl~ 192 (209)
..+.+++|+.++.|++|..+ ++.+ .|.+..++. ..+++| +.||+|+|+- ++.|+..
T Consensus 207 a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a-~~vV~a~G~~-s~~l~~~ 264 (410)
T PRK12409 207 CARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEF-DGVVVCAGVG-SRALAAM 264 (410)
T ss_pred HHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEec-CEEEECCCcC-hHHHHHH
Confidence 45678999999999999865 3333 333333221 235788 6999999965 4555543
No 102
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.64 E-value=8.5 Score=35.64 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=46.1
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMVS 193 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~S 193 (209)
.+|+++++++.|++|.-+ ++++++|++.+ +++..++.++ .|+++.|..-.+.+|..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~--~g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGD--GDKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcC--CCcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 479999999999999744 46888898874 4666678885 999999999888887654
No 103
>PLN02487 zeta-carotene desaturase
Probab=79.08 E-value=4.5 Score=38.21 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=41.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCC-CC--eEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEK-SK--RAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~-~~--~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
...+.+|++++.|++|.++.+ ++ +++||++.+++....+.+ ..||++++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~a-D~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKA-DAYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEEC-CEEEECCCHHHHHHhC
Confidence 466789999999999999742 22 589999853333345677 4899988876555554
No 104
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=78.38 E-value=6.3 Score=34.30 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=37.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
...+.+++.++.|++|..+ ++.+ .|.. .++ ++.+ +.||+|+|+.. +.|+..-|+.
T Consensus 156 ~~~g~~~~~~~~V~~i~~~--~~~~-~v~~-~~~---~i~a-~~vV~aaG~~~-~~l~~~~g~~ 210 (380)
T TIGR01377 156 EAHGATVRDGTKVVEIEPT--ELLV-TVKT-TKG---SYQA-NKLVVTAGAWT-SKLLSPLGIE 210 (380)
T ss_pred HHcCCEEECCCeEEEEEec--CCeE-EEEe-CCC---EEEe-CEEEEecCcch-HHHhhhcccC
Confidence 4568999999999999765 3333 3432 233 4777 59999999864 4566555654
No 105
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=76.08 E-value=15 Score=30.52 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=42.6
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMVS 193 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~S 193 (209)
+.+++++.++.+++|.-+ +++.+|++.+ +++..++.+ ..||+|.|....+.+|..+
T Consensus 189 ~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 189 NPNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKV-DGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEc-cEEEEeeCCCCChHHHHHh
Confidence 349999999999998743 3677777654 465667888 4999999987777777655
No 106
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=75.75 E-value=6.2 Score=35.24 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=42.5
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE---e----CCe--------EEEEEeCcEEEEcCCCcccHHHH
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELM---K----GNS--------KIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~---~----~g~--------~~~v~A~keVILsaGai~TP~lL 190 (209)
+++++.+++...++|.+|... +++++||.-. . .|+ .+++.| ..||++.|.|+--+=|
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t--~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-~aviv~SGGIGGnhel 233 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTT--GGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-SAVIVASGGIGGNHEL 233 (552)
T ss_pred HHhCCceEEEeeeeccceEee--CCeEeeecccccCCCccccCCCccceeecceEEee-eeEEEecCCcCCCHHH
Confidence 346788999999999999988 6899998642 0 121 356788 4999999999754444
No 107
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=75.57 E-value=5.6 Score=34.99 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=34.7
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCC-eEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSK-RAVGVELMK-GNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~-~a~gV~~~~-~g~~~~v~A~keVILsaGai~TP~l 189 (209)
|+.=++.+-...+..+..|+.|..+..++ ...-|...+ +|....+.| |.|||+.| .+|.|
T Consensus 100 Yl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~a-r~vVla~G--~~P~i 161 (341)
T PF13434_consen 100 YLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRA-RNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEE-SEEEE------EE--
T ss_pred HHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEe-CeEEECcC--CCCCC
Confidence 44434444444488899999999876322 344454443 577778899 59999999 66664
No 108
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=74.82 E-value=8 Score=35.34 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=43.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-----------CCeEEEEEeCcEEEEcCCCccc-HHHHHHcCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-----------GNSKIRVFARKEVVLSAGAINS-PQILMVSGI 195 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-----------~g~~~~v~A~keVILsaGai~T-P~lLl~SGI 195 (209)
...++++++++.+++|.-+ ++++++|++.+ .+...++.++ .||+|.|..-. ..||...|+
T Consensus 340 ~~~GV~i~~~~~~~~i~~~--~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGE--NGKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHcCCeEEeccCceEEEcc--CCEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence 3568999999999999643 57898888752 2445678885 99999995543 456655554
No 109
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=74.41 E-value=12 Score=33.95 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=43.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--------CC---------eEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--------GN---------SKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--------~g---------~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
...++++++++.+.+|.-++ ++++++|++.+ +| ....+.++ .||+|.|-.-...+|...|+
T Consensus 320 ~~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D-~Vi~AiG~~p~~~~l~~~gl 397 (449)
T TIGR01316 320 EEEGVKFHFLCQPVEIIGDE-EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEAD-AVIVAIGNGSNPIMAETTRL 397 (449)
T ss_pred HhCCCEEEeccCcEEEEEcC-CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECC-EEEECCCCCCCchhhhccCc
Confidence 46789999999999997543 56888888751 22 23468885 99999997655555544554
No 110
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=74.20 E-value=8.3 Score=34.11 Aligned_cols=51 Identities=18% Similarity=0.061 Sum_probs=36.0
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP 187 (209)
+.+|++++.++.|++|..++ +. +.|.+.+++...++++ +-||.|-|+-..-
T Consensus 133 ~~~~v~i~~~~~v~~v~~~~--~~-~~v~~~~~~~~~~i~a-dlvIgADG~~S~v 183 (415)
T PRK07364 133 SCPNITWLCPAEVVSVEYQQ--DA-ATVTLEIEGKQQTLQS-KLVVAADGARSPI 183 (415)
T ss_pred cCCCcEEEcCCeeEEEEecC--Ce-eEEEEccCCcceEEee-eEEEEeCCCCchh
Confidence 44789999999999997653 22 3355554454557889 5999999975433
No 111
>PLN02985 squalene monooxygenase
Probab=73.34 E-value=9.8 Score=35.39 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=37.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~TP~ 188 (209)
+.+|+++..+ .|+.+..+ ++.++||.+.. +|++.+++| +-||.|.|..-.-+
T Consensus 159 ~~~~V~i~~g-tvv~li~~--~~~v~gV~~~~~dG~~~~~~A-dLVVgADG~~S~vR 211 (514)
T PLN02985 159 SLPNVRLEEG-TVKSLIEE--KGVIKGVTYKNSAGEETTALA-PLTVVCDGCYSNLR 211 (514)
T ss_pred hCCCeEEEee-eEEEEEEc--CCEEEEEEEEcCCCCEEEEEC-CEEEECCCCchHHH
Confidence 4578998854 67777655 46788999864 566667888 59999999765433
No 112
>PRK07233 hypothetical protein; Provisional
Probab=72.36 E-value=6.7 Score=34.69 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=36.4
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
..+.+|++++.|++|..+ ++++++|. .+++ ++.+ +.||+++.+-..+.||
T Consensus 210 ~~g~~v~~~~~V~~i~~~--~~~~~~~~--~~~~--~~~a-d~vI~a~p~~~~~~ll 259 (434)
T PRK07233 210 ARGGEIRLGTPVTSVVID--GGGVTGVE--VDGE--EEDF-DAVISTAPPPILARLV 259 (434)
T ss_pred hcCceEEeCCCeeEEEEc--CCceEEEE--eCCc--eEEC-CEEEECCCHHHHHhhc
Confidence 456799999999999876 45565554 2443 4778 5899999987666654
No 113
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.14 E-value=5.3 Score=36.82 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=35.4
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
..+..+.+|.+++.|++|+.++ ++.++|.-. .| ..+.| +.||..+.. ..++.|.
T Consensus 233 ~~~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~-~g--~~~~a-d~vv~~~~~-~~~~~l~ 286 (487)
T COG1233 233 LAREHGGEIRTGAEVSQILVEG--GKGVGVRTS-DG--ENIEA-DAVVSNADP-ALLARLL 286 (487)
T ss_pred HHHHcCCEEECCCceEEEEEeC--CcceEEecc-cc--ceecc-ceeEecCch-hhhhhhh
Confidence 3456789999999999999984 554444322 23 45667 477766666 4444444
No 114
>PRK12831 putative oxidoreductase; Provisional
Probab=71.45 E-value=17 Score=33.27 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=43.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-----------------CCeEEEEEeCcEEEEcCCCcccHHHHHH-cC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-----------------GNSKIRVFARKEVVLSAGAINSPQILMV-SG 194 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-----------------~g~~~~v~A~keVILsaGai~TP~lLl~-SG 194 (209)
...++++++.+.+.+|.-++ ++++++|++.. .|...++.++ .||+|.|..-...++.. .|
T Consensus 329 ~~eGV~i~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~~~~g 406 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGDE-NGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVD-TVIMSLGTSPNPLISSTTKG 406 (464)
T ss_pred HHcCCEEEecccceEEEecC-CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECCCCCCChhhhcccCC
Confidence 35789999999999997654 57888988751 2334568885 99999997655555443 45
Q ss_pred C
Q psy4106 195 I 195 (209)
Q Consensus 195 I 195 (209)
+
T Consensus 407 l 407 (464)
T PRK12831 407 L 407 (464)
T ss_pred c
Confidence 4
No 115
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=70.83 E-value=5.4 Score=36.56 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=44.0
Q ss_pred ccccccccCCCeE--EEcCeEEEEEEeeCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 126 AFLHPIRRRRNLH--VTKFSLVTKLIIDEKSKRAVGVELMKG-NSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 126 ~~L~~~~~~~nl~--i~~~~~V~rI~~~~~~~~a~gV~~~~~-g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
.||...+.+-++. |..++.|++|..++ ++ .-|..... +...+... +.||||.|....|.+.-.-|+
T Consensus 115 ~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~-w~V~~~~~~~~~~~~~~-d~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 115 AYLQDFAREFKIEEMVRFETEVVRVEPVD--GK-WRVQSKNSGGFSKDEIF-DAVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHcCCcceEEecCEEEEEeecC--Ce-EEEEEEcCCCceEEEEc-CEEEEeccCCCCCcCCCCCCc
Confidence 4665545566666 89999999997652 32 23443332 23334456 599999999999988866665
No 116
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=69.98 E-value=13 Score=32.73 Aligned_cols=50 Identities=22% Similarity=0.120 Sum_probs=33.3
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
..+ +++|+.++.|+.|..+ +++ +.|+. .+|. .++| +.||+|+|+- ++.|+
T Consensus 145 ~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t-~~g~--~~~a-~~vV~a~G~~-~~~l~ 194 (381)
T TIGR03197 145 AGI-RLTLHFNTEITSLERD--GEG-WQLLD-ANGE--VIAA-SVVVLANGAQ-AGQLA 194 (381)
T ss_pred cCC-CcEEEeCCEEEEEEEc--CCe-EEEEe-CCCC--EEEc-CEEEEcCCcc-ccccc
Confidence 345 8999999999999865 333 33432 2343 3678 6999999965 34443
No 117
>PRK06126 hypothetical protein; Provisional
Probab=68.98 E-value=15 Score=34.01 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=35.8
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~ 185 (209)
+.+|++|+.++.|++|..+. +.++ |.+.+ +|+..++++ +-||.|.|+--
T Consensus 138 ~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~~~~g~~~~i~a-d~vVgADG~~S 188 (545)
T PRK06126 138 AQPGVTLRYGHRLTDFEQDA--DGVT-ATVEDLDGGESLTIRA-DYLVGCDGARS 188 (545)
T ss_pred hCCCceEEeccEEEEEEECC--CeEE-EEEEECCCCcEEEEEE-EEEEecCCcch
Confidence 35789999999999998763 3343 44443 466678889 58888888744
No 118
>PRK10262 thioredoxin reductase; Provisional
Probab=68.90 E-value=27 Score=29.83 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=43.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC---CeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG---NSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~---g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
.+..++++++++.|++|.-+ +..+.+|++.+. +...++.+ ..||++.|..-...|+. +++.
T Consensus 195 l~~~gV~i~~~~~v~~v~~~--~~~~~~v~~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~l~~-~~l~ 258 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGD--QMGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIFE-GQLE 258 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcC--CccEEEEEEEEcCCCCeEEEEEC-CEEEEEeCCccChhHhh-cccc
Confidence 34678999999999998643 346778887642 34456888 49999999887777553 4553
No 119
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=68.67 E-value=15 Score=33.55 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=43.0
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-----------------CCeEEEEEeCcEEEEcCCCccc-HHHHHHcCC
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-----------------GNSKIRVFARKEVVLSAGAINS-PQILMVSGI 195 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-----------------~g~~~~v~A~keVILsaGai~T-P~lLl~SGI 195 (209)
..++++++++.+.+|..++ ++++++|++.. .|...++.++ .||++.|..-. +.+|..+|+
T Consensus 332 ~~GV~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D-~Vi~a~G~~p~~~~~~~~~gl 409 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDE-DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPAD-VVIMAFGFQPHAMPWLAGHGI 409 (467)
T ss_pred hcCCEEEecCCcEEEEECC-CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECC-EEEECCcCCCCccccccccCc
Confidence 5789999999999997654 46888888742 1335578885 99999997654 345555554
No 120
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=68.35 E-value=3.1 Score=39.06 Aligned_cols=53 Identities=34% Similarity=0.462 Sum_probs=38.2
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
...+||+|+-+ .|+.|++++ +.+++||... .|. .+.| |-|||.+|++-.-+|.
T Consensus 111 e~~~NL~l~q~-~v~dli~e~-~~~v~GV~t~-~G~--~~~a-~aVVlTTGTFL~G~I~ 163 (621)
T COG0445 111 ENQPNLHLLQG-EVEDLIVEE-GQRVVGVVTA-DGP--EFHA-KAVVLTTGTFLRGKIH 163 (621)
T ss_pred hcCCCceehHh-hhHHHhhcC-CCeEEEEEeC-CCC--eeec-CEEEEeecccccceEE
Confidence 36789998876 577777764 4579998754 453 4677 6999999998655443
No 121
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.09 E-value=25 Score=32.60 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=43.7
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMV 192 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~ 192 (209)
+.|++|++++.|++|.-+ ++++++|.+.+ ++...++.++ .||++.|..-...+|..
T Consensus 400 ~~gV~i~~~~~v~~i~~~--~~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGD--GDKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCCEEEECCeeEEEEcC--CCEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 468999999999998643 46788888864 3555678885 99999998887777753
No 122
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=66.67 E-value=18 Score=33.59 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=49.8
Q ss_pred ccccccccccccc---ccCCCeEEEcCeEEEEEEeeCC--CCeEEEEEEEeCCeEEE--EEeCcEEEEcCCCcc
Q psy4106 119 TRWSTSRAFLHPI---RRRRNLHVTKFSLVTKLIIDEK--SKRAVGVELMKGNSKIR--VFARKEVVLSAGAIN 185 (209)
Q Consensus 119 ~R~sa~~~~L~~~---~~~~nl~i~~~~~V~rI~~~~~--~~~a~gV~~~~~g~~~~--v~A~keVILsaGai~ 185 (209)
.|.....+.+.|+ ++..++++..+++|+.|.++.+ ..+|+.+++..+|.... +....-||+.-|.+-
T Consensus 201 T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 201 TKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred CccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 4555555566664 4678999999999999999753 35788999887765544 566678999888764
No 123
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.67 E-value=19 Score=32.40 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=44.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcccHHHHHHc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAINSPQILMVS 193 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~TP~lLl~S 193 (209)
.-+|++|+++++-+.|.=+ +.+++|++|.+ +|+.+.+.- ..|.+--|-+-+..+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gd--g~kV~Gl~Y~dr~sge~~~l~L-eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGD--GDKVTGLEYRDRVSGEEHHLEL-EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecC--CceecceEEEeccCCceeEEEe-eeeEEEEecccChhHhhch
Confidence 5689999999999999765 67999999986 566666655 3677777777777776533
No 124
>PRK10015 oxidoreductase; Provisional
Probab=66.26 E-value=13 Score=33.65 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=35.8
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGA 183 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGa 183 (209)
+|.......+++++.++.|+.|..+ ++++++|.. ++ .++.| +-||+|.|+
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~--~~--~~i~A-~~VI~AdG~ 162 (429)
T PRK10015 113 WLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA--GD--DILEA-NVVILADGV 162 (429)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe--CC--eEEEC-CEEEEccCc
Confidence 3433334568999999999999876 456766652 33 35788 599999997
No 125
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.77 E-value=14 Score=35.39 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=43.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-----------------CCeEEEEEeCcEEEEcCCCccc-HHHHHHcC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-----------------GNSKIRVFARKEVVLSAGAINS-PQILMVSG 194 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-----------------~g~~~~v~A~keVILsaGai~T-P~lLl~SG 194 (209)
...+++++.++.+.+|..++ ++++++|++.. .|..+++.++ .||+|.|.... ..+|..+|
T Consensus 517 ~~~Gv~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~~~~g 594 (654)
T PRK12769 517 REEGANFEFNVQPVALELNE-QGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPAD-AVIMAFGFNPHGMPWLESHG 594 (654)
T ss_pred HHcCCeEEeccCcEEEEECC-CCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECC-EEEECccCCCCccccccccC
Confidence 45689999999999997654 57899998742 1334578885 99999996643 34555555
Q ss_pred C
Q psy4106 195 I 195 (209)
Q Consensus 195 I 195 (209)
|
T Consensus 595 l 595 (654)
T PRK12769 595 V 595 (654)
T ss_pred C
Confidence 5
No 126
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=65.46 E-value=13 Score=32.99 Aligned_cols=51 Identities=25% Similarity=0.260 Sum_probs=35.4
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGA 183 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGa 183 (209)
+|...+...+.+++++++|+.+..++ ++.++++.. ++ .+++| |-||.|-|+
T Consensus 100 ~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~--~~--~e~~a-~~vI~AdG~ 150 (396)
T COG0644 100 WLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRA--GD--DEVRA-KVVIDADGV 150 (396)
T ss_pred HHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEc--CC--EEEEc-CEEEECCCc
Confidence 44433456889999999999999885 344444432 22 67889 588888874
No 127
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=63.74 E-value=21 Score=30.97 Aligned_cols=49 Identities=29% Similarity=0.241 Sum_probs=33.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
.+.+++++.++.|++|..+. +. ..|.. .+| .+.+ +.||+|+|+. ++.|+
T Consensus 160 ~~~gv~i~~~~~v~~i~~~~--~~-~~v~~-~~g---~~~a-~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 160 REAGAELLFNEPVTAIEADG--DG-VTVTT-ADG---TYEA-KKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHCCCEEECCCEEEEEEeeC--Ce-EEEEe-CCC---EEEe-eEEEEecCcc-hhhhc
Confidence 45789999999999998753 32 22332 234 4678 6999999985 44554
No 128
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=63.70 E-value=21 Score=29.46 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=36.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
..+.+++++.++.|++|..++ +.+ .|.+.. ...++++ +-||+|.|+-.. +...-|+.+
T Consensus 101 ~~~~gv~~~~~~~v~~~~~~~--~~~-~~~~~~--~~~~~~a-~~vv~a~G~~s~--~~~~~~~~~ 158 (295)
T TIGR02032 101 AQEAGAELRLGTTVLDVEIHD--DRV-VVIVRG--GEGTVTA-KIVIGADGSRSI--VAKKLGLRK 158 (295)
T ss_pred HHHcCCEEEeCcEEeeEEEeC--CEE-EEEEcC--ccEEEEe-CEEEECCCcchH--HHHhcCCCC
Confidence 345689999999999998874 332 232222 2245788 599999997632 333335544
No 129
>PLN02612 phytoene desaturase
Probab=62.88 E-value=13 Score=34.88 Aligned_cols=45 Identities=16% Similarity=0.025 Sum_probs=33.7
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGA 183 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGa 183 (209)
+.+.+|++++.|++|..++ ++++++|.+. +|+ .+.| +.||++...
T Consensus 320 ~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~-~G~--~~~a-d~VI~a~p~ 364 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELND-DGTVKHFLLT-NGS--VVEG-DVYVSATPV 364 (567)
T ss_pred hcCCEEEeCCeeeEEEECC-CCcEEEEEEC-CCc--EEEC-CEEEECCCH
Confidence 4578999999999999865 4677777764 453 3677 589988753
No 130
>PRK11445 putative oxidoreductase; Provisional
Probab=60.94 E-value=39 Score=29.39 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=36.4
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~ 188 (209)
..+++++.++.|+.|..++ +. ..|.+..+|...++++ +-||.|.|+--..+
T Consensus 110 ~~gv~v~~~~~v~~i~~~~--~~-~~v~~~~~g~~~~i~a-~~vV~AdG~~S~vr 160 (351)
T PRK11445 110 PASVEVYHNSLCRKIWRED--DG-YHVIFRADGWEQHITA-RYLVGADGANSMVR 160 (351)
T ss_pred hcCCEEEcCCEEEEEEEcC--CE-EEEEEecCCcEEEEEe-CEEEECCCCCcHHh
Confidence 4679999999999997653 22 3355545665557888 59999999765443
No 131
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=60.74 E-value=23 Score=33.83 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-----------------CCeEEEEEeCcEEEEcCCCccc-HHHHHHcCC
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-----------------GNSKIRVFARKEVVLSAGAINS-PQILMVSGI 195 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-----------------~g~~~~v~A~keVILsaGai~T-P~lLl~SGI 195 (209)
..++++++.+.+++|..++ ++++++|++.. .|..+.+.++ .||+|.|.... ..+|...||
T Consensus 501 ~eGv~~~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD-~Vi~AiG~~p~~~~~~~~~gl 578 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDE-DGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPAD-VLIMAFGFQAHAMPWLQGSGI 578 (639)
T ss_pred HcCCeEEeccCCEEEEECC-CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECcCCCCCccccccccCc
Confidence 5689999999999997654 57888887631 1345678885 99999996543 334443454
No 132
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=60.67 E-value=24 Score=31.89 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=40.1
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH--HHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL--MVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL--l~SGI 195 (209)
....+++|++++.|++|.-++ +. +.|.+.+++...++.++ .||+|.|..-...+| ..+|+
T Consensus 223 l~~~gV~i~~~~~V~~i~~~~--~~-v~v~~~~gg~~~~i~~D-~vi~a~G~~p~~~~l~l~~~gl 284 (462)
T PRK06416 223 LKKRGIKIKTGAKAKKVEQTD--DG-VTVTLEDGGKEETLEAD-YVLVAVGRRPNTENLGLEELGV 284 (462)
T ss_pred HHHcCCEEEeCCEEEEEEEeC--CE-EEEEEEeCCeeEEEEeC-EEEEeeCCccCCCCCCchhcCC
Confidence 346789999999999997553 32 23444444555568884 999999987555543 34444
No 133
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=58.91 E-value=26 Score=31.35 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=40.7
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
.+..++++++++.|++|.- ++++..|.. ++. ++.+ ..||+|.|..-...+|..+|+.
T Consensus 201 l~~~gI~v~~~~~v~~i~~---~~~~~~v~~--~~~--~i~~-d~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 201 LRENGVELHLNEFVKSLIG---EDKVEGVVT--DKG--EYEA-DVVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHCCCEEEcCCEEEEEec---CCcEEEEEe--CCC--EEEc-CEEEECcCCCcCHHHHHhcCcc
Confidence 3567899999999999942 234444432 332 3677 5999999988777788888873
No 134
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=58.21 E-value=24 Score=31.79 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=39.3
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH--HHHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ--ILMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~--lLl~SGI 195 (209)
.+..++++++++.|++|..++ +.+. |+. .+|...++.++ .||+|.|..-... +|..+|+
T Consensus 221 l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~-~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~~gl 281 (461)
T TIGR01350 221 LKKKGVKILTNTKVTAVEKND--DQVV-YEN-KGGETETLTGE-KVLVAVGRKPNTEGLGLENLGV 281 (461)
T ss_pred HHHcCCEEEeCCEEEEEEEeC--CEEE-EEE-eCCcEEEEEeC-EEEEecCCcccCCCCCcHhhCc
Confidence 345689999999999997653 3332 332 24544457784 9999999877666 3444443
No 135
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=58.03 E-value=20 Score=27.84 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=35.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeE----EEEEEEeCCeEEEEEeCcEEEEcCCCc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRA----VGVELMKGNSKIRVFARKEVVLSAGAI 184 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a----~gV~~~~~g~~~~v~A~keVILsaGai 184 (209)
.+.+++++.++.|.+|... .+++ ..+.....+....+.+ +.||||.|+-
T Consensus 69 ~~~~v~~~~~~~v~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~-d~lviAtG~~ 121 (201)
T PF07992_consen 69 KNRGVEIRLNAKVVSIDPE--SKRVVCPAVTIQVVETGDGREIKY-DYLVIATGSR 121 (201)
T ss_dssp HHHTHEEEHHHTEEEEEES--TTEEEETCEEEEEEETTTEEEEEE-EEEEEESTEE
T ss_pred ccceEEEeecccccccccc--ccccccCcccceeeccCCceEecC-CeeeecCccc
Confidence 4588999999999999776 3432 2344444566677888 5999999954
No 136
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=57.91 E-value=24 Score=32.12 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=40.5
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELM-KGNSKIRVFARKEVVLSAGAINSPQI--LMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~-~~g~~~~v~A~keVILsaGai~TP~l--Ll~SGI 195 (209)
..+.+++|++++.|++|.-+ ++. ..|.+. .+|...++.+ ..||+|.|..-...+ |..+|+
T Consensus 223 l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~l~l~~~g~ 285 (466)
T PRK07818 223 YKKLGVKILTGTKVESIDDN--GSK-VTVTVSKKDGKAQELEA-DKVLQAIGFAPRVEGYGLEKTGV 285 (466)
T ss_pred HHHCCCEEEECCEEEEEEEe--CCe-EEEEEEecCCCeEEEEe-CEEEECcCcccCCCCCCchhcCc
Confidence 35678999999999999643 232 234444 2565556888 499999997765554 345554
No 137
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.44 E-value=34 Score=31.17 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=41.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCc-ccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAI-NSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai-~TP~lL 190 (209)
..+++.+++.+.|.++.-.. +++ .-+.+.. .|+..+++.. .||||.|-= ..|.+|
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G-~g~-~~l~~~~~~~~~~~t~~~D-~vIlATGY~~~~P~fL 346 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAG-DGR-YRLTLRHHETGELETVETD-AVILATGYRRAVPSFL 346 (436)
T ss_pred CCCCeeeccccceeeeecCC-Cce-EEEEEeeccCCCceEEEee-EEEEecccccCCchhh
Confidence 36889999999999998664 244 4455543 5777788884 999999987 677665
No 138
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=56.95 E-value=39 Score=31.33 Aligned_cols=54 Identities=26% Similarity=0.144 Sum_probs=38.5
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
.++++|+.++.|+.|..++ .. +.|.+.+ +|+..++++ +-||-|-|+--+-+=++
T Consensus 126 ~~gv~v~~g~~v~~i~~~~--~~-v~v~~~~~~G~~~~i~a-d~vVgADG~~S~vR~~l 180 (538)
T PRK06183 126 FPHVRVRFGHEVTALTQDD--DG-VTVTLTDADGQRETVRA-RYVVGCDGANSFVRRTL 180 (538)
T ss_pred CCCcEEEcCCEEEEEEEcC--Ce-EEEEEEcCCCCEEEEEE-EEEEecCCCchhHHHHc
Confidence 4689999999999998764 23 3355554 566678899 58998988765554333
No 139
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=56.94 E-value=24 Score=31.89 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=39.1
Q ss_pred ccccccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 124 SRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 124 ~~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~ 188 (209)
..++|.. .+..|++|++++.|..|.-++ ....|.. .+|. ++++ ..+|||.|..--|+
T Consensus 114 v~~ll~~-~~~~gV~i~~~~~v~~v~~~~---~~f~l~t-~~g~--~i~~-d~lilAtGG~S~P~ 170 (408)
T COG2081 114 VDALLKE-LEALGVTIRTRSRVSSVEKDD---SGFRLDT-SSGE--TVKC-DSLILATGGKSWPK 170 (408)
T ss_pred HHHHHHH-HHHcCcEEEecceEEeEEecC---ceEEEEc-CCCC--EEEc-cEEEEecCCcCCCC
Confidence 3445543 468899999999999998763 1222221 2453 6888 49999999887774
No 140
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=56.16 E-value=21 Score=32.40 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=35.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~ 188 (209)
.+..++++++++.|++|.-++ + ...|++..++...++.+ ..||+|.|..-...
T Consensus 217 l~~~gV~i~~~~~V~~i~~~~--~-~~~v~~~~~~~~~~i~~-D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 217 LAEEGIEVVTSAQVKAVSVRG--G-GKIITVEKPGGQGEVEA-DELLVATGRRPNTD 269 (463)
T ss_pred HHHcCCEEEcCcEEEEEEEcC--C-EEEEEEEeCCCceEEEe-CEEEEeECCCcCCC
Confidence 456789999999999997542 2 23444443333356788 49999999764444
No 141
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=56.09 E-value=39 Score=31.67 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=41.9
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe---------------CCeEEEEEeCcEEEEcCCCcccHHHHHH-cCCC
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK---------------GNSKIRVFARKEVVLSAGAINSPQILMV-SGIG 196 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~---------------~g~~~~v~A~keVILsaGai~TP~lLl~-SGIG 196 (209)
..++++++++.+.+|.-++ ++++ ||++.. .|...++.++ .||+|.|..-.+.+|.. +|+-
T Consensus 317 ~~GVki~~~~~~~~i~~~~-~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~~~~~~~gl~ 392 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDE-NGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEAD-LVVLAIGQDIDSAGLESVPGVE 392 (564)
T ss_pred HcCCEEEecCCcEEEEcCC-CCEE-EEEEEEEEecccCCCCCeeecCCceEEEECC-EEEECcCCCCchhhhhhccCcc
Confidence 4689999999999997543 3444 766531 2344678885 99999997776677763 5653
No 142
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=55.45 E-value=32 Score=30.23 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=29.2
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGA 183 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGa 183 (209)
.+..++|+.++.|+.+..+++ + -.-+.+.+ .++...+.++ .||||.|-
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~D-~VilATGy 339 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGD-G-GVRLTLRHRQTGEEETLEVD-AVILATGY 339 (341)
T ss_dssp T---SEEETTEEEEEEEEES--S-SEEEEEEETTT--EEEEEES-EEEE---E
T ss_pred CCCCeEEeCCCEEEEEEECCC-C-EEEEEEEECCCCCeEEEecC-EEEEcCCc
Confidence 455799999999999998852 2 23444554 5677788885 99999983
No 143
>PRK08244 hypothetical protein; Provisional
Probab=55.07 E-value=33 Score=31.35 Aligned_cols=49 Identities=16% Similarity=0.043 Sum_probs=34.2
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~ 185 (209)
....+++|+.++.|+.|..++ ..+ .|.+.+ +| ..++++ +-||.|.|+--
T Consensus 110 ~~~~gv~v~~~~~v~~i~~~~--~~v-~v~~~~~~g-~~~i~a-~~vVgADG~~S 159 (493)
T PRK08244 110 ARSLGVEIFRGAEVLAVRQDG--DGV-EVVVRGPDG-LRTLTS-SYVVGADGAGS 159 (493)
T ss_pred HHHcCCeEEeCCEEEEEEEcC--CeE-EEEEEeCCc-cEEEEe-CEEEECCCCCh
Confidence 345689999999999997663 333 344443 34 456888 59999999843
No 144
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=54.51 E-value=27 Score=31.81 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSG 194 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SG 194 (209)
....+|..++.|+.+.++++ ...--|.+.+.+... +.+ +.||+|+|.++.|.+=-.-|
T Consensus 96 ~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~-~~a-~~vV~ATG~~~~P~iP~~~G 153 (443)
T COG2072 96 GLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGE-LTA-DFVVVATGHLSEPYIPDFAG 153 (443)
T ss_pred CceeEEEcccceEEEEecCC-CCeEEEEEcCCCeee-Eec-CEEEEeecCCCCCCCCCCCC
Confidence 34466777777777888763 334455554433333 778 59999999999987654444
No 145
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=54.41 E-value=51 Score=33.32 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=47.2
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
++.+++|++++.|++|.- ++++.+|++.. ++...++.++ .|+++.|..-...|+...|..
T Consensus 362 ~~~GV~i~~~~~v~~i~g---~~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEG---GKRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHcCCEEEcCCeEEEEec---CCcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 467899999999999853 35677888764 3455568885 999999999999998888754
No 146
>PRK06370 mercuric reductase; Validated
Probab=54.15 E-value=31 Score=31.31 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=38.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH-H-HHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ-I-LMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~-l-Ll~SGI 195 (209)
++..++++++++.|.+|.-++ ++ ..|.+...+...++.++ .||+|.|..-... | |...|+
T Consensus 222 l~~~GV~i~~~~~V~~i~~~~-~~--~~v~~~~~~~~~~i~~D-~Vi~A~G~~pn~~~l~l~~~g~ 283 (463)
T PRK06370 222 LEREGIDVRLNAECIRVERDG-DG--IAVGLDCNGGAPEITGS-HILVAVGRVPNTDDLGLEAAGV 283 (463)
T ss_pred HHhCCCEEEeCCEEEEEEEcC-CE--EEEEEEeCCCceEEEeC-EEEECcCCCcCCCCcCchhhCc
Confidence 456789999999999997542 22 23444433333457784 9999999775555 3 444454
No 147
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=54.10 E-value=47 Score=29.26 Aligned_cols=51 Identities=10% Similarity=-0.154 Sum_probs=34.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T 186 (209)
...+.+++.++.|++|.-.+ +..+.|.+..+|++.++++ +-||-|-|+-..
T Consensus 114 ~~~gv~v~~~~~v~~i~~~~--~~~~~V~~~~~G~~~~i~a-d~vVgADG~~S~ 164 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDFD--SDRPYVTYEKDGEEHRLDC-DFIAGCDGFHGV 164 (392)
T ss_pred HhCCCeEEEeeeEEEEEecC--CCceEEEEEcCCeEEEEEe-CEEEECCCCCCc
Confidence 35688999999999986422 2234566655677778888 466666664443
No 148
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=53.49 E-value=19 Score=31.18 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=29.8
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
+.+++|+.++.|+.|. . + .|.. .+| .++| +.||+|+|+- |+.||
T Consensus 158 ~~Gv~i~~~t~V~~i~--~-~----~v~t-~~g---~i~a-~~VV~A~G~~-s~~l~ 201 (365)
T TIGR03364 158 QHGVEFHWNTAVTSVE--T-G----TVRT-SRG---DVHA-DQVFVCPGAD-FETLF 201 (365)
T ss_pred cCCCEEEeCCeEEEEe--c-C----eEEe-CCC---cEEe-CEEEECCCCC-hhhhC
Confidence 3589999999999984 2 2 3433 234 2568 5999999984 44443
No 149
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=53.30 E-value=34 Score=30.48 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=39.2
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC------CeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG------NSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~------g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
+|...+...+++|+..+ +..+..........+|++... |+..+++| +-||.|.|+-- .+...-|++
T Consensus 98 ~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a-~~VIgADG~~S--~v~~~~g~~ 169 (398)
T TIGR02028 98 FLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV-DAVIGADGANS--RVAKEIDAG 169 (398)
T ss_pred HHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEe-CEEEECCCcch--HHHHHhCCC
Confidence 34333345689998875 766654322344556766531 55567899 59999998643 333333554
No 150
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=53.28 E-value=43 Score=29.38 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=42.1
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
....++++++++.|.+|..+. +. ..|.+ .+|+ ++.+ ..||+|.|..-.+.++..+|+.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~-~~g~--~i~~-D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTD--SG-IRATL-DSGR--SIEV-DAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHhCCCEEEECCeEEEEEccC--CE-EEEEE-cCCc--EEEC-CEEEECcCCCcchHHHHHCCCC
Confidence 356789999999999987542 22 23443 3453 4777 4999999988888888888874
No 151
>KOG2311|consensus
Probab=51.98 E-value=12 Score=34.86 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=39.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCC--CeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKS--KRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~--~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
..+||+|+-++.+.-|+.+++. .++.||... +| ..|+| +-|||..|+|-+.+|-
T Consensus 136 st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~-dg--t~v~a-~~VilTTGTFL~~~I~ 191 (679)
T KOG2311|consen 136 STPNLEIREGAVADLIVEDPDDGHCVVSGVVLV-DG--TVVYA-ESVILTTGTFLRGQIN 191 (679)
T ss_pred cCCcchhhhhhhhheeeccCCCCceEEEEEEEe-cC--cEecc-ceEEEeeccceeeEEe
Confidence 5689999988766666655432 368888776 45 34788 5999999999877764
No 152
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=51.84 E-value=34 Score=29.34 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=27.4
Q ss_pred CeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy4106 136 NLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGA 183 (209)
Q Consensus 136 nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGa 183 (209)
+.+|++++.|++|..++ ++++ |.+. +|+ ++.| +.||+++..
T Consensus 223 g~~i~l~~~V~~I~~~~--~~v~-v~~~-~g~--~~~a-d~VI~a~p~ 263 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERED--GGVT-VTTE-DGE--TIEA-DAVISAVPP 263 (450)
T ss_dssp GGGEESSEEEEEEEEES--SEEE-EEET-TSS--EEEE-SEEEE-S-H
T ss_pred CceeecCCcceeccccc--cccc-cccc-cce--EEec-ceeeecCch
Confidence 44899999999999984 4442 4333 443 6778 489998873
No 153
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=51.30 E-value=28 Score=31.80 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=38.3
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
....+++|++++.|++|.-++ .. +.|.+.+ +|+...+.++ .||++.|..-....|
T Consensus 234 l~~~gi~i~~~~~v~~i~~~~--~~-v~v~~~~~~g~~~~i~~D-~vl~a~G~~p~~~~l 289 (475)
T PRK06327 234 FTKQGLDIHLGVKIGEIKTGG--KG-VSVAYTDADGEAQTLEVD-KLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHcCcEEEeCcEEEEEEEcC--CE-EEEEEEeCCCceeEEEcC-EEEEccCCccCCCCC
Confidence 346789999999999997552 22 2355544 3555568884 999999987665533
No 154
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=50.95 E-value=29 Score=29.23 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=32.8
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAI 184 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai 184 (209)
.+.+++|+.++.|+.+..+. ..++.+.... +|+..+++|+ -||-|-|+-
T Consensus 122 ~~~gv~i~~~~~v~~~~~d~--~~~~~~~~~~~~g~~~~i~ad-lvVgADG~~ 171 (356)
T PF01494_consen 122 EERGVDIRFGTRVVSIEQDD--DGVTVVVRDGEDGEEETIEAD-LVVGADGAH 171 (356)
T ss_dssp HHHTEEEEESEEEEEEEEET--TEEEEEEEETCTCEEEEEEES-EEEE-SGTT
T ss_pred hhhhhhheeeeecccccccc--cccccccccccCCceeEEEEe-eeecccCcc
Confidence 34459999999999998874 3444333332 5777789994 777776654
No 155
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=50.53 E-value=43 Score=30.32 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=39.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe----------------CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK----------------GNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~----------------~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
...++++++++.+.+|.-+ ++.+++|++.. .+...++.++ .||++.|..-...|+.
T Consensus 322 ~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~l~~ 393 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGD--EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPAD-LVIKAIGQTPNPLILS 393 (457)
T ss_pred HHCCCEEEecCCcEEEEec--CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECC-EEEECccCCCCchhhc
Confidence 4578999999999998744 34456776642 2344568885 9999999776655543
No 156
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=50.07 E-value=41 Score=30.36 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=33.0
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai~ 185 (209)
.+.|++++.+++|++|..++ + .|.+.+ ++....+.. +.+|||.|+--
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~--~---~v~~~~~~~~~~~~~~y-d~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDER--Q---TVTVLNRKTNEQFEESY-DKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCC--C---EEEEEECCCCcEEeeec-CEEEECCCCCC
Confidence 45789999999999997652 3 244443 234445667 59999999863
No 157
>PRK07045 putative monooxygenase; Reviewed
Probab=48.72 E-value=38 Score=29.67 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=32.8
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
..+|.+++.+++|+.|..++ ++.++.|.+. +|+ ++.+ +-||-|-|+-.
T Consensus 118 ~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~-~g~--~~~~-~~vIgADG~~S 165 (388)
T PRK07045 118 GLPNVRLRFETSIERIERDA-DGTVTSVTLS-DGE--RVAP-TVLVGADGARS 165 (388)
T ss_pred cCCCeeEEeCCEEEEEEECC-CCcEEEEEeC-CCC--EEEC-CEEEECCCCCh
Confidence 46789999999999998865 3445566653 453 4667 46666666444
No 158
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=48.50 E-value=43 Score=33.31 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=43.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
....+++|++++.|++|.-+. ......|.+. +|+ .+.++ .||+|+|..-...|+..+|+
T Consensus 197 L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~-dG~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 197 IESMGVRVHTSKNTLEIVQEG-VEARKTMRFA-DGS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHCCCEEEcCCeEEEEEecC-CCceEEEEEC-CCC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 456789999999999997542 2345556553 453 47774 99999999888888777886
No 159
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=48.32 E-value=32 Score=31.37 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=35.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE--eCCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELM--KGNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~--~~g~~~~v~A~keVILsaGai~TP~l 189 (209)
.+..+++|++++.|++|.-++ +. +.|.+. .+|....+.++ .||+|.|..-....
T Consensus 225 l~~~gV~i~~~~~V~~i~~~~--~~-v~v~~~~~~~g~~~~i~~D-~vi~a~G~~pn~~~ 280 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATAGA--DG-VSLTLEPAAGGAAETLQAD-YVLVAIGRRPYTQG 280 (466)
T ss_pred HHhcCCEEEECcEEEEEEEcC--Ce-EEEEEEEcCCCceeEEEeC-EEEEccCCcccccc
Confidence 456789999999999997542 22 233333 23445568884 99999997754443
No 160
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=47.69 E-value=66 Score=32.68 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=42.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe----------------CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK----------------GNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~----------------~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
...++++++.+.+.+|..++ ++++++|++.. .|...++.++ .||+|.|-.-.+.++.
T Consensus 620 ~eeGI~~~~~~~p~~i~~~~-~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D-~Vi~AiG~~p~~~~~~ 692 (1006)
T PRK12775 620 KEEGIDFFFLHSPVEIYVDA-EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECD-TVIYALGTKANPIITQ 692 (1006)
T ss_pred HhCCCEEEecCCcEEEEeCC-CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcC-EEEECCCcCCChhhhh
Confidence 45789999999999997654 57899988752 1234568885 9999999876665544
No 161
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=47.17 E-value=29 Score=31.49 Aligned_cols=50 Identities=16% Similarity=-0.002 Sum_probs=34.4
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP 187 (209)
..+.+++|++++.|++|.-+ +. .+.+..+|+..++.++ .||+|.|..-..
T Consensus 221 L~~~GI~i~~~~~V~~i~~~--~~---~v~~~~~g~~~~i~~D-~vivA~G~~p~~ 270 (458)
T PRK06912 221 LENDGVKIFTGAALKGLNSY--KK---QALFEYEGSIQEVNAE-FVLVSVGRKPRV 270 (458)
T ss_pred HHHCCCEEEECCEEEEEEEc--CC---EEEEEECCceEEEEeC-EEEEecCCccCC
Confidence 34678999999999998644 22 2334445554567784 999999965443
No 162
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=45.76 E-value=24 Score=31.51 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=35.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC--CeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG--NSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~--g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
...+++++.++.|++|..++ + .|.+... ++...+.+ +.||||.|+ +|..+-..|+
T Consensus 55 ~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~~~~~~~y-d~lIiATG~--~p~~~~i~G~ 111 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDER--Q---TVVVRNNKTNETYEESY-DYLILSPGA--SPIVPNIEGI 111 (427)
T ss_pred HhcCCeEEecCEEEEEECCC--C---EEEEEECCCCCEEecCC-CEEEECCCC--CCCCCCCCCc
Confidence 45689999999999997652 3 2444432 33333337 599999998 5655544443
No 163
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=45.66 E-value=42 Score=29.16 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCc
Q psy4106 135 RNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAI 184 (209)
Q Consensus 135 ~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai 184 (209)
+|++++.++.|+.|..++ .. +.|.+ .+|. ++.| +-||.|.|+-
T Consensus 119 ~gv~~~~~~~v~~i~~~~--~~-~~v~~-~~g~--~~~a-d~vV~AdG~~ 161 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQ--DY-VRVTL-DNGQ--QLRA-KLLIAADGAN 161 (382)
T ss_pred CCcEEEcCCeEEEEEEcC--Ce-EEEEE-CCCC--EEEe-eEEEEecCCC
Confidence 689999999999997653 22 23433 2443 4778 5899999954
No 164
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=45.48 E-value=19 Score=32.03 Aligned_cols=52 Identities=17% Similarity=0.042 Sum_probs=41.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~ 188 (209)
.+.+-.++++-.|.+..+. ++++++|..+ +.....++| +++||+.|.+-|--
T Consensus 269 ~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~tr-n~~diP~~a-~~~VLAsGsffskG 320 (421)
T COG3075 269 EQLGGLWMPGDEVKKATCK--GGRVTEIYTR-NHADIPLRA-DFYVLASGSFFSKG 320 (421)
T ss_pred HHcCceEecCCceeeeeee--CCeEEEEEec-ccccCCCCh-hHeeeecccccccc
Confidence 3456678999999999988 6899998766 566677899 59999999886643
No 165
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=45.06 E-value=55 Score=29.94 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=34.5
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAI 184 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai 184 (209)
+..+-++++++.|++|.+++ ++++++|... +|+ +++| +.||.....+
T Consensus 243 a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~-~Ge--~i~a-~~VV~~~s~~ 289 (443)
T PTZ00363 243 AIYGGTYMLNTPVDEVVFDE-NGKVCGVKSE-GGE--VAKC-KLVICDPSYF 289 (443)
T ss_pred HHcCcEEEcCCeEEEEEEcC-CCeEEEEEEC-CCc--EEEC-CEEEECcccc
Confidence 44677999999999999875 4678888754 453 3667 5888766654
No 166
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=44.30 E-value=40 Score=30.64 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=37.1
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~l 189 (209)
.+..+++|++++.|++|..+. .+.+..+. ..+|...++.++ .||+|.|..-....
T Consensus 231 l~~~gI~i~~~~~v~~i~~~~-~~~~~~~~-~~~g~~~~i~~D-~vi~a~G~~p~~~~ 285 (472)
T PRK05976 231 LKKLGVRVVTGAKVLGLTLKK-DGGVLIVA-EHNGEEKTLEAD-KVLVSVGRRPNTEG 285 (472)
T ss_pred HHhcCCEEEeCcEEEEEEEec-CCCEEEEE-EeCCceEEEEeC-EEEEeeCCccCCCC
Confidence 356789999999999997521 12333332 235655568885 99999998755443
No 167
>PRK06184 hypothetical protein; Provisional
Probab=43.88 E-value=72 Score=29.22 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=33.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T 186 (209)
...+++|..+++|+.|..++ ..+ -|.+...+...++++ +-||.|.|+--+
T Consensus 120 ~~~gv~i~~~~~v~~i~~~~--~~v-~v~~~~~~~~~~i~a-~~vVgADG~~S~ 169 (502)
T PRK06184 120 AELGHRVEFGCELVGFEQDA--DGV-TARVAGPAGEETVRA-RYLVGADGGRSF 169 (502)
T ss_pred HHCCCEEEeCcEEEEEEEcC--CcE-EEEEEeCCCeEEEEe-CEEEECCCCchH
Confidence 34579999999999998764 222 233333223346888 599999997643
No 168
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=43.75 E-value=63 Score=28.06 Aligned_cols=61 Identities=28% Similarity=0.330 Sum_probs=42.5
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-----------------CCeEEEEEeCcEEEEcCCCcccHHHHHH-c
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-----------------GNSKIRVFARKEVVLSAGAINSPQILMV-S 193 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-----------------~g~~~~v~A~keVILsaGai~TP~lLl~-S 193 (209)
+...++++++++.+.++.- .+++.+|++.+ ++....+.++ .||++.|..-++.++.. +
T Consensus 220 l~~~gi~i~~~~~v~~i~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D-~vi~a~G~~p~~~l~~~~~ 295 (352)
T PRK12770 220 LIARGVEFLELVTPVRIIG---EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEAD-TVVFAIGEIPTPPFAKECL 295 (352)
T ss_pred HHHcCCEEeeccCceeeec---CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECC-EEEECcccCCCchhhhccc
Confidence 3456899999999988752 24566666531 3444568884 99999999887766554 5
Q ss_pred CCC
Q psy4106 194 GIG 196 (209)
Q Consensus 194 GIG 196 (209)
|+.
T Consensus 296 g~~ 298 (352)
T PRK12770 296 GIE 298 (352)
T ss_pred Cce
Confidence 653
No 169
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=43.68 E-value=81 Score=29.28 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=33.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T 186 (209)
+.++++|..++.|+.+..++ ..+ .|.+...+...++++ +-||.|.|+--+
T Consensus 137 ~~~~v~v~~~~~v~~i~~~~--~~v-~v~~~~~~g~~~i~a-d~vVgADG~~S~ 186 (547)
T PRK08132 137 ALPNIDLRWKNKVTGLEQHD--DGV-TLTVETPDGPYTLEA-DWVIACDGARSP 186 (547)
T ss_pred hCCCcEEEeCCEEEEEEEcC--CEE-EEEEECCCCcEEEEe-CEEEECCCCCcH
Confidence 34679999999999998764 222 233433222346888 599999997543
No 170
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=43.25 E-value=1e+02 Score=31.15 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=39.9
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe----------------CCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK----------------GNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~----------------~g~~~~v~A~keVILsaGai~TP~l 189 (209)
..++++...+.+.+|.-+++++++++|++.. .|....+.++ .||+|.|....+.+
T Consensus 496 eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD-~VI~AiG~~p~~~l 566 (944)
T PRK12779 496 EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVD-LVIMALGNTANPIM 566 (944)
T ss_pred HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECC-EEEEcCCcCCChhh
Confidence 4689999999999997653345788877631 2344678885 99999998766543
No 171
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=42.67 E-value=45 Score=30.22 Aligned_cols=45 Identities=20% Similarity=0.131 Sum_probs=31.1
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
..+.+++|+.++.|+.|.. ++ .+.|.. .+| ++.| +.||+|+|+.-
T Consensus 193 a~~~Gv~i~~~t~V~~i~~---~~-~~~v~t-~~g---~v~A-~~VV~Atga~s 237 (460)
T TIGR03329 193 ALELGVEIHENTPMTGLEE---GQ-PAVVRT-PDG---QVTA-DKVVLALNAWM 237 (460)
T ss_pred HHHcCCEEECCCeEEEEee---CC-ceEEEe-CCc---EEEC-CEEEEcccccc
Confidence 3467899999999999863 22 223432 234 4788 59999999863
No 172
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=42.62 E-value=49 Score=29.19 Aligned_cols=49 Identities=22% Similarity=0.116 Sum_probs=35.1
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP 187 (209)
...+|++|+.++.|+.+..+ +..++ |.+..+|+ +++| +-||-|=| ++|.
T Consensus 115 ~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~--~~~a-~llVgADG-~~S~ 163 (387)
T COG0654 115 RALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGE--TLDA-DLLVGADG-ANSA 163 (387)
T ss_pred hhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCc--EEec-CEEEECCC-CchH
Confidence 35788999999999999987 34565 66554565 6888 47777766 4443
No 173
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=42.58 E-value=45 Score=29.77 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=33.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP 187 (209)
..+.+++|.+++.|+.|..+ ++ ...|.. ++. ++.+ +.||+|+|....|
T Consensus 115 l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~--~~~--~i~a-d~VIlAtG~~s~p 162 (400)
T TIGR00275 115 LKELGVEILTNSKVKSIKKD--DN-GFGVET--SGG--EYEA-DKVILATGGLSYP 162 (400)
T ss_pred HHHCCCEEEeCCEEEEEEec--CC-eEEEEE--CCc--EEEc-CEEEECCCCcccC
Confidence 34678999999999999654 23 334444 333 4677 6999999987655
No 174
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=42.53 E-value=12 Score=34.95 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=38.0
Q ss_pred ccccccccCCCe--EEEcCeEEEEEEeeCCCCe--EEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 126 AFLHPIRRRRNL--HVTKFSLVTKLIIDEKSKR--AVGVELMKGNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 126 ~~L~~~~~~~nl--~i~~~~~V~rI~~~~~~~~--a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
.||..-+++-+| +|..++.|++|...++... -.-|....+|+..+-.- ..||+|.|....|.+=.
T Consensus 88 ~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~f-D~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 88 EYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEF-DAVVVATGHFSKPNIPE 156 (531)
T ss_dssp HHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEE-CEEEEEE-SSSCESB--
T ss_pred HHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEe-CeEEEcCCCcCCCCCCh
Confidence 455543444444 7899999999987642111 12233333465443334 47999999999997654
No 175
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=42.40 E-value=37 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=23.2
Q ss_pred ccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE
Q psy4106 130 PIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELM 163 (209)
Q Consensus 130 ~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~ 163 (209)
...+..|+++++++.|++|.-++ ++ +. |.+.
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~~ 78 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTLE 78 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEET-TS-EE-EEEE
T ss_pred HHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEEe
Confidence 33456799999999999999775 34 55 6654
No 176
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=42.29 E-value=50 Score=28.55 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=30.9
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCc
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAI 184 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai 184 (209)
+.+.+|.+|+.++.|++|..++ +.+ .|.+. +|+ ++.+ +-||.|.|+-
T Consensus 116 ~~~~~~~~v~~~~~v~~i~~~~--~~~-~v~~~-~g~--~~~~-~~vi~adG~~ 162 (385)
T TIGR01988 116 LQEYPNVTLLCPARVVELPRHS--DHV-ELTLD-DGQ--QLRA-RLLVGADGAN 162 (385)
T ss_pred HHhCCCcEEecCCeEEEEEecC--Cee-EEEEC-CCC--EEEe-eEEEEeCCCC
Confidence 3345569999999999998763 333 24332 453 3677 5888888863
No 177
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=41.64 E-value=42 Score=29.31 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~l 189 (209)
..+.+|.+++.|++|..++ ++++. .+..+|+ .+.+ +.||++.-+-...+|
T Consensus 209 ~~g~~i~~~~~V~~i~~~~--~~~~~-~~~~~g~--~~~~-d~vi~a~p~~~~~~l 258 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANA--GGIRA-LVLSGGE--TLPA-DAVVLAVPPRHAASL 258 (419)
T ss_pred HcCCEEEcCCeeeEEEEcC--CcceE-EEecCCc--cccC-CEEEEcCCHHHHHHh
Confidence 3467999999999999874 33332 2223443 4667 588887664444443
No 178
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=41.42 E-value=62 Score=28.35 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=36.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
...+++++.++.|+.+..++ ..+ .|++ .+|. ++.+ +.||.|.|+- | .+-...|+.
T Consensus 124 ~~~gv~i~~~~~v~~i~~~~--~~v-~v~~-~~g~--~~~a-~~vV~AdG~~-S-~vr~~~g~~ 178 (392)
T PRK08773 124 HAAGVQLHCPARVVALEQDA--DRV-RLRL-DDGR--RLEA-ALAIAADGAA-S-TLRELAGLP 178 (392)
T ss_pred HhCCCEEEcCCeEEEEEecC--CeE-EEEE-CCCC--EEEe-CEEEEecCCC-c-hHHHhhcCC
Confidence 45689999999999998653 333 2433 2453 4677 5899998874 3 455555654
No 179
>PRK13984 putative oxidoreductase; Provisional
Probab=41.29 E-value=87 Score=29.54 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-------C---------CeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-------G---------NSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-------~---------g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
..++++++++.+.+|..+ ++++++|++.+ + |...++.++ .||+|.|..-...+|.
T Consensus 474 ~~GV~i~~~~~~~~i~~~--~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD-~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 474 EEGVVIYPGWGPMEVVIE--NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEAD-MVVEAIGQAPDYSYLP 544 (604)
T ss_pred HcCCEEEeCCCCEEEEcc--CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECC-EEEEeeCCCCChhhhh
Confidence 468999999999887643 56888887642 1 234568885 9999999886656654
No 180
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=40.51 E-value=66 Score=31.34 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=40.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--------C---------CeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--------G---------NSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--------~---------g~~~~v~A~keVILsaGai~TP~lL 190 (209)
...+++++..+.+.+|.-++ ++++++|++.. + |...++.++ .||+|.|..-...++
T Consensus 619 ~~~GV~i~~~~~~~~i~~~~-~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~l~ 691 (752)
T PRK12778 619 KEEGIEFLTLHNPIEYLADE-KGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVD-LVIVSVGVSPNPLVP 691 (752)
T ss_pred HHcCCEEEecCcceEEEECC-CCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECC-EEEECcCCCCCcccc
Confidence 45689999999999997654 57898988741 1 334568885 999999977555443
No 181
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=40.39 E-value=53 Score=28.64 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=34.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
..++++++.++.|+.|..++ +.+ .|.+. ++ .++.+ +.||.|.|+- | .+....|+.
T Consensus 124 ~~~g~~~~~~~~v~~i~~~~--~~~-~v~~~-~g--~~~~a-~~vI~AdG~~-S-~vr~~~~~~ 178 (395)
T PRK05732 124 KAPGVTLHCPARVANVERTQ--GSV-RVTLD-DG--ETLTG-RLLVAADGSH-S-ALREALGID 178 (395)
T ss_pred cCCCcEEEcCCEEEEEEEcC--CeE-EEEEC-CC--CEEEe-CEEEEecCCC-h-hhHHhhCCC
Confidence 45689999999999987553 322 24332 34 24677 5888888864 3 344444543
No 182
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=40.19 E-value=81 Score=27.89 Aligned_cols=57 Identities=11% Similarity=0.217 Sum_probs=40.0
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
....++++++++.|++|.-+ .. +.|+. .+|+ ++.+ ..||++.|..-...|+..+|+.
T Consensus 196 l~~~GV~i~~~~~V~~i~~~---~~-~~v~l-~~g~--~i~a-D~Vv~a~G~~pn~~l~~~~gl~ 252 (396)
T PRK09754 196 HQQAGVRILLNNAIEHVVDG---EK-VELTL-QSGE--TLQA-DVVIYGIGISANDQLAREANLD 252 (396)
T ss_pred HHHCCCEEEeCCeeEEEEcC---CE-EEEEE-CCCC--EEEC-CEEEECCCCChhhHHHHhcCCC
Confidence 34678999999999998531 22 23333 3453 4677 4999999998777787777764
No 183
>KOG1298|consensus
Probab=40.07 E-value=32 Score=31.33 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=38.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCccc
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~T 186 (209)
...+|+++.- ..|..|+-+ .+.++||+|.. .|++.+.+|- --|+|-|-+-.
T Consensus 158 ~slpNV~~ee-GtV~sLlee--~gvvkGV~yk~k~gee~~~~Ap-LTvVCDGcfSn 209 (509)
T KOG1298|consen 158 ASLPNVRLEE-GTVKSLLEE--EGVVKGVTYKNKEGEEVEAFAP-LTVVCDGCFSN 209 (509)
T ss_pred hcCCCeEEee-eeHHHHHhc--cCeEEeEEEecCCCceEEEecc-eEEEecchhHH
Confidence 4578988655 467777755 46999999986 4777888994 89999997753
No 184
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=39.73 E-value=43 Score=30.81 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=37.6
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
++..+++|++++.+++|.-.+ +. ..|++.+++...++.++ .||+|.|-.-.+.+|.
T Consensus 230 L~~~gV~i~~~~~v~~v~~~~--~~-~~v~~~~~~~~~~i~~D-~vl~a~G~~pn~~~l~ 285 (484)
T TIGR01438 230 MEEHGVKFKRQFVPIKVEQIE--AK-VKVTFTDSTNGIEEEYD-TVLLAIGRDACTRKLN 285 (484)
T ss_pred HHHcCCEEEeCceEEEEEEcC--Ce-EEEEEecCCcceEEEeC-EEEEEecCCcCCCcCC
Confidence 456789999999999986442 22 33554432222357784 9999999887776643
No 185
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=38.75 E-value=65 Score=30.80 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=31.5
Q ss_pred CeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 136 NLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 136 nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
++++..++.|++|..++ +.++ |+. .++ ..+.+ +.||+|+|+- ++.|+
T Consensus 421 Gv~i~~~~~V~~i~~~~--~~~~-v~t-~~g--~~~~a-d~VV~A~G~~-s~~l~ 467 (662)
T PRK01747 421 QLTIHFGHEVARLERED--DGWQ-LDF-AGG--TLASA-PVVVLANGHD-AARFA 467 (662)
T ss_pred CcEEEeCCEeeEEEEeC--CEEE-EEE-CCC--cEEEC-CEEEECCCCC-ccccc
Confidence 79999999999998763 4333 332 233 23567 5999999974 44544
No 186
>PLN02576 protoporphyrinogen oxidase
Probab=37.97 E-value=85 Score=28.52 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=33.7
Q ss_pred eEEEcCeEEEEEEeeCCCCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 137 LHVTKFSLVTKLIIDEKSKRAVGVELMK-GNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 137 l~i~~~~~V~rI~~~~~~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
-+|.+++.|++|..++ +++ +.|.+.. +|. .++.+ +.||++.=+-....||.
T Consensus 252 ~~i~l~~~V~~I~~~~-~~~-~~v~~~~~~g~-~~~~a-d~VI~a~P~~~l~~ll~ 303 (496)
T PLN02576 252 DKVKLNWKVLSLSKND-DGG-YSLTYDTPEGK-VNVTA-KAVVMTAPLYVVSEMLR 303 (496)
T ss_pred CcEEcCCEEEEEEECC-CCc-EEEEEecCCCc-eeEEe-CEEEECCCHHHHHHHhc
Confidence 3699999999998764 222 3444443 232 35778 58999887666666654
No 187
>KOG2853|consensus
Probab=37.88 E-value=93 Score=28.10 Aligned_cols=46 Identities=30% Similarity=0.243 Sum_probs=32.3
Q ss_pred eEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCCcchhhc
Q psy4106 156 RAVGVELM-KGNSKIRVFARKEVVLSAGAINSPQILMVSGIGPREHLRE 203 (209)
Q Consensus 156 ~a~gV~~~-~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~~~~L~~ 203 (209)
++.||.+. .++-.+.++.. -+|+||||- |-|+-.+.|||-...+-+
T Consensus 291 ~i~~vvV~m~d~~~r~vk~a-l~V~aAGa~-s~QvArlAgIG~g~g~L~ 337 (509)
T KOG2853|consen 291 RISGVVVRMNDALARPVKFA-LCVNAAGAW-SGQVARLAGIGKGPGLLA 337 (509)
T ss_pred ccceeEEecCchhcCceeEE-EEEeccCcc-HHHHHHHhccCCCCceee
Confidence 44555554 24445678884 999999986 789999999985554433
No 188
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=37.87 E-value=83 Score=29.15 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=35.4
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~l 189 (209)
..+.+++.+++|..|.+.+ +.+.+|... +| .++.+ ++||||-|--+.--+
T Consensus 185 ~~G~ei~f~t~VeDi~~~~--~~~~~v~~~-~g--~~i~~-~~vvlA~Grsg~dw~ 234 (486)
T COG2509 185 SLGGEIRFNTEVEDIEIED--NEVLGVKLT-KG--EEIEA-DYVVLAPGRSGRDWF 234 (486)
T ss_pred hcCcEEEeeeEEEEEEecC--CceEEEEcc-CC--cEEec-CEEEEccCcchHHHH
Confidence 3458999999999999984 445555543 34 35778 599999995544333
No 189
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=37.81 E-value=65 Score=31.67 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=42.7
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
.+..+++|++++.|++|.-+ +++.+|.+. +|+ ++.++ .||+|+|.--...|+..+|+
T Consensus 192 l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~-dG~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGA---TKADRIRFK-DGS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHcCCEEEeCCceEEEEcC---CceEEEEEC-CCC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 45678999999999998632 456677764 453 46774 99999998877777777776
No 190
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=37.27 E-value=86 Score=27.55 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=37.3
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-----CCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-----GNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-----~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
+|...+...+++++.. .|++|..++ +. +.|.+.+ +++..++.| +-||.|.|+-.. +-...|+.
T Consensus 97 ~L~~~a~~~G~~v~~~-~v~~v~~~~--~~-~~v~~~~~~~~~~~~~~~i~a-~~VI~AdG~~S~--v~r~lg~~ 164 (388)
T TIGR02023 97 YLRERAQKAGAELIHG-LFLKLERDR--DG-VTLTYRTPKKGAGGEKGSVEA-DVVIGADGANSP--VAKELGLP 164 (388)
T ss_pred HHHHHHHhCCCEEEee-EEEEEEEcC--Ce-EEEEEEeccccCCCcceEEEe-CEEEECCCCCcH--HHHHcCCC
Confidence 4433234467888755 688887653 33 3465553 334467889 599999996432 22334554
No 191
>PRK08163 salicylate hydroxylase; Provisional
Probab=36.62 E-value=59 Score=28.43 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=32.2
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQ 188 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~ 188 (209)
..++++++.++.|+.+..++ +.+ .|.+ .+|. ++.+ +.||.|.|+-...+
T Consensus 121 ~~~~v~~~~~~~v~~i~~~~--~~v-~v~~-~~g~--~~~a-d~vV~AdG~~S~~r 169 (396)
T PRK08163 121 DHPLVEFRTSTHVVGIEQDG--DGV-TVFD-QQGN--RWTG-DALIGCDGVKSVVR 169 (396)
T ss_pred hcCCcEEEeCCEEEEEecCC--Cce-EEEE-cCCC--EEec-CEEEECCCcChHHH
Confidence 45579999999999998653 322 2332 2443 4678 58888888655443
No 192
>PRK07538 hypothetical protein; Provisional
Probab=36.18 E-value=62 Score=28.72 Aligned_cols=49 Identities=18% Similarity=0.057 Sum_probs=30.2
Q ss_pred CCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy4106 135 RNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 135 ~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T 186 (209)
+..+|+.+++|+.+..++ ++.++.+....+|...+++| +-||-|-| ++|
T Consensus 117 g~~~i~~~~~v~~~~~~~-~~~~~~~~~~~~g~~~~~~a-dlvIgADG-~~S 165 (413)
T PRK07538 117 GPDAVRTGHRVVGFEQDA-DVTVVFLGDRAGGDLVSVRG-DVLIGADG-IHS 165 (413)
T ss_pred CCcEEEcCCEEEEEEecC-CceEEEEeccCCCccceEEe-eEEEECCC-CCH
Confidence 345799999999998764 33333333222455567888 36666666 455
No 193
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=35.99 E-value=76 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=32.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEEeCcEEEEcCCCc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVFARKEVVLSAGAI 184 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~A~keVILsaGai 184 (209)
...+++++.++.|++|..++ + .|.+.+ ++....+.. +.+|||.|+-
T Consensus 67 ~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~~~~~~~y-d~lviAtG~~ 114 (444)
T PRK09564 67 IKSGIDVKTEHEVVKVDAKN--K---TITVKNLKTGSIFNDTY-DKLMIATGAR 114 (444)
T ss_pred HHCCCeEEecCEEEEEECCC--C---EEEEEECCCCCEEEecC-CEEEECCCCC
Confidence 45689999999999997763 3 344443 344444557 5999999984
No 194
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=1.6e+02 Score=25.55 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=45.0
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG-NSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~-g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
+++|+.+++++.+.+|.=+ + +.+|.+.+. ++...+... -|.++-|..-.-.++...++
T Consensus 190 ~~~~i~~~~~~~i~ei~G~--~--v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGD--D--VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred hcCCeEEEeCCceeEEecC--c--cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence 4558999999999999744 2 778888764 666677774 89999998877778877665
No 195
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=34.93 E-value=56 Score=29.66 Aligned_cols=54 Identities=31% Similarity=0.361 Sum_probs=40.2
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSG 194 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SG 194 (209)
...+.|++|++++.|++|.-+ +|.+.+.++ ++.+ ..||-+||.=.+|-+=.++|
T Consensus 218 ~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~-~tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 218 ALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPA-DTVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEec-CEEEEcCCCcCChhhhhcCh
Confidence 346789999999999999643 455543333 6888 59999999988887665554
No 196
>PRK07190 hypothetical protein; Provisional
Probab=34.41 E-value=90 Score=28.75 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=32.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
...+++|..++.|+.|..+++ + ++ |.. .+|+ +++| +-||.|.|+-.
T Consensus 120 ~~~Gv~v~~~~~v~~l~~~~~-~-v~-v~~-~~g~--~v~a-~~vVgADG~~S 165 (487)
T PRK07190 120 KEAGAAVKRNTSVVNIELNQA-G-CL-TTL-SNGE--RIQS-RYVIGADGSRS 165 (487)
T ss_pred HHCCCEEEeCCEEEEEEEcCC-e-eE-EEE-CCCc--EEEe-CEEEECCCCCH
Confidence 446899999999999988742 2 21 222 3453 6788 69999999844
No 197
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=34.05 E-value=68 Score=27.88 Aligned_cols=55 Identities=25% Similarity=0.162 Sum_probs=33.7
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
+.+.+|++++ ++.|+.|..++ .. +.|.+. +| .++++ +.||.|.|+- |. +....|+
T Consensus 121 ~~~~~~v~~~-~~~v~~i~~~~--~~-~~v~~~-~g--~~~~a-~~vI~adG~~-S~-vr~~~~~ 175 (388)
T PRK07608 121 LRFQPNLTWF-PARAQGLEVDP--DA-ATLTLA-DG--QVLRA-DLVVGADGAH-SW-VRSQAGI 175 (388)
T ss_pred HHhCCCcEEE-cceeEEEEecC--Ce-EEEEEC-CC--CEEEe-eEEEEeCCCC-ch-HHHhcCC
Confidence 3344569999 99999987653 22 234432 34 25778 5999999974 32 3344444
No 198
>KOG2415|consensus
Probab=32.76 E-value=81 Score=29.20 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=54.4
Q ss_pred cccccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe-----CCe-------EEEEEeCcEEEEcCCCcc--cHHHH
Q psy4106 125 RAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK-----GNS-------KIRVFARKEVVLSAGAIN--SPQIL 190 (209)
Q Consensus 125 ~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~-----~g~-------~~~v~A~keVILsaGai~--TP~lL 190 (209)
..||...++.-+++|+.+..+..+++++ ++.+.||...+ +|. -..++| |.-|.|-|.-+ |-|||
T Consensus 186 v~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~ha-k~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 186 VRWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHA-KVTIFAEGCHGSLSKQII 263 (621)
T ss_pred HHHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecc-eeEEEeccccchhHHHHH
Confidence 3455544566789999999999999998 67888987653 221 235788 58899988877 56777
Q ss_pred HHcCCCCcchhhcCC
Q psy4106 191 MVSGIGPREHLREKS 205 (209)
Q Consensus 191 l~SGIG~~~~L~~~g 205 (209)
.+-++.-..+.+..|
T Consensus 264 kkf~Lr~n~e~qtYg 278 (621)
T KOG2415|consen 264 KKFDLRENCEPQTYG 278 (621)
T ss_pred HHhCcccCCCcceec
Confidence 766544333333333
No 199
>KOG2852|consensus
Probab=31.49 E-value=38 Score=29.73 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=41.0
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG-NSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~-g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
+.++.|++++.+. |..+. ++ ..|+++|.+... +..+...+ ..||||||-- |++||..-+|
T Consensus 157 a~k~~~V~lv~Gk-v~ev~-dE-k~r~n~v~~ae~~~ti~~~d~-~~ivvsaGPW-Tskllp~~rI 217 (380)
T KOG2852|consen 157 AEKRGGVKLVFGK-VKEVS-DE-KHRINSVPKAEAEDTIIKADV-HKIVVSAGPW-TSKLLPFTRI 217 (380)
T ss_pred HHhhcCeEEEEee-eEEee-cc-cccccccchhhhcCceEEeee-eEEEEecCCC-chhhcccccc
Confidence 4578899998874 55555 33 578888876521 32344556 5899999975 7888877655
No 200
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=31.06 E-value=1.3e+02 Score=26.74 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=39.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
....++++++++.|.+|.-+ +.+ |.. .+|+ ++.+ ..||+|.|..-...+|..+|+-
T Consensus 189 l~~~gV~v~~~~~v~~i~~~---~~~--v~~-~~g~--~i~~-D~vi~a~G~~p~~~~l~~~gl~ 244 (427)
T TIGR03385 189 LKKHEINLRLNEEVDSIEGE---ERV--KVF-TSGG--VYQA-DMVILATGIKPNSELAKDSGLK 244 (427)
T ss_pred HHHcCCEEEeCCEEEEEecC---CCE--EEE-cCCC--EEEe-CEEEECCCccCCHHHHHhcCcc
Confidence 34678999999999998643 222 333 3453 4677 4899999998777888877763
No 201
>PRK06834 hypothetical protein; Provisional
Probab=29.62 E-value=1.2e+02 Score=27.86 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=32.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
...+++|+.++.|+.|..++ ..+ .|++ .+|. ++++ +-||.|.|+--
T Consensus 111 ~~~gv~i~~~~~v~~v~~~~--~~v-~v~~-~~g~--~i~a-~~vVgADG~~S 156 (488)
T PRK06834 111 GELGVPIYRGREVTGFAQDD--TGV-DVEL-SDGR--TLRA-QYLVGCDGGRS 156 (488)
T ss_pred HhCCCEEEcCCEEEEEEEcC--CeE-EEEE-CCCC--EEEe-CEEEEecCCCC
Confidence 44579999999999998764 222 2333 2443 5788 59999999843
No 202
>PRK09126 hypothetical protein; Provisional
Probab=28.96 E-value=1.2e+02 Score=26.31 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=31.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAI 184 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai 184 (209)
...+++|+.++.|+.+..++ .. +.|.+. +|+ ++.+ +-||.|.|.-
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~--~~-~~v~~~-~g~--~~~a-~~vI~AdG~~ 166 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDD--DG-AQVTLA-NGR--RLTA-RLLVAADSRF 166 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcC--Ce-EEEEEc-CCC--EEEe-CEEEEeCCCC
Confidence 45789999999999997653 22 335443 453 5778 5888888863
No 203
>PRK14727 putative mercuric reductase; Provisional
Probab=28.80 E-value=88 Score=28.58 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=37.7
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH--HHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL--MVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL--l~SGI 195 (209)
.++.+++|++++.|++|..++ +. +.+..++. ++.+ ..||+|.|..-...+| ..+|+
T Consensus 238 L~~~GV~i~~~~~V~~i~~~~--~~---~~v~~~~g--~i~a-D~VlvA~G~~pn~~~l~l~~~g~ 295 (479)
T PRK14727 238 FEKEGIEVLNNTQASLVEHDD--NG---FVLTTGHG--ELRA-EKLLISTGRHANTHDLNLEAVGV 295 (479)
T ss_pred HHhCCCEEEcCcEEEEEEEeC--CE---EEEEEcCC--eEEe-CEEEEccCCCCCccCCCchhhCc
Confidence 456789999999999997653 22 22322222 3667 5999999998777654 44454
No 204
>PRK10759 lipoprotein; Provisional
Probab=28.24 E-value=27 Score=25.57 Aligned_cols=19 Identities=21% Similarity=0.585 Sum_probs=12.7
Q ss_pred hHhHHHHHhcCCCCCCccchH
Q psy4106 5 LVFRQTVAYVEGPGWSYDEVR 25 (209)
Q Consensus 5 ~~~~d~W~~~g~~gW~~~~l~ 25 (209)
+|.||.= .+.++|||+|+.
T Consensus 71 KE~yDsr--~~GsgwSwkDla 89 (106)
T PRK10759 71 KELYDSR--PAGSGWSWKDLA 89 (106)
T ss_pred HHHHhcC--CCCCCCCHHHHH
Confidence 4555542 356799999984
No 205
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=27.88 E-value=1.3e+02 Score=27.47 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=34.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeC------CeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG------NSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~------g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
...+.+++.. .|+.|..+.++...+.|.+... |+..+++| +-||-|-|+ +| ++-..-|++
T Consensus 143 ~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a-~~VIgADG~-~S-~vrr~lg~~ 208 (450)
T PLN00093 143 QSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEV-DAVIGADGA-NS-RVAKDIDAG 208 (450)
T ss_pred HHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEe-CEEEEcCCc-ch-HHHHHhCCC
Confidence 3457888765 5777765432222334555432 54567888 588888886 33 333333554
No 206
>PTZ00367 squalene epoxidase; Provisional
Probab=27.51 E-value=1.9e+02 Score=27.40 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=34.7
Q ss_pred cCCCeEEEcCeEEEEEEeeCCC--CeEEEEEEEeCC----------------------eEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKS--KRAVGVELMKGN----------------------SKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~--~~a~gV~~~~~g----------------------~~~~v~A~keVILsaGai~T 186 (209)
..+|++++ ++.|+.++.+..+ .++.||++..++ ...+++| +-||.|-|.--.
T Consensus 145 ~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~A-dLvVgADG~~S~ 220 (567)
T PTZ00367 145 CQDNVTML-EGTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATA-PLVVMCDGGMSK 220 (567)
T ss_pred cCCCcEEE-EeEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEe-CEEEECCCcchH
Confidence 35789986 4688888766421 468899886433 1346788 488888886433
No 207
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=27.48 E-value=1.5e+02 Score=28.45 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=38.7
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--------------CCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--------------GNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--------------~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
..+++|+.++.+.+|.-++++-++..+.+.. .|....+.++ .||++.|..-.+.+|..+|+
T Consensus 373 ~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D-~VI~AiG~~p~~~ll~~~gl 447 (652)
T PRK12814 373 AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQAD-TVISAIGQQVDPPIAEAAGI 447 (652)
T ss_pred HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECC-EEEECCCCcCCcccccccCc
Confidence 4678999999998886543111233333321 2344568885 99999998766666655555
No 208
>PRK06847 hypothetical protein; Provisional
Probab=27.34 E-value=1.7e+02 Score=25.25 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=35.1
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILM 191 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl 191 (209)
...+++|+.++.|++|..+. .. ..|.+. +|+ ++.+ +-||.|.|+-...+-++
T Consensus 118 ~~~gv~v~~~~~v~~i~~~~--~~-~~v~~~-~g~--~~~a-d~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 118 RAAGADVRLGTTVTAIEQDD--DG-VTVTFS-DGT--TGRY-DLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHhCCEEEeCCEEEEEEEcC--CE-EEEEEc-CCC--EEEc-CEEEECcCCCcchhhHh
Confidence 45688999999999997653 32 234432 453 4677 59999999866554433
No 209
>KOG2820|consensus
Probab=26.29 E-value=1.2e+02 Score=27.30 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=39.4
Q ss_pred cccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHH
Q psy4106 131 IRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMV 192 (209)
Q Consensus 131 ~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~ 192 (209)
.++..+..++.+..|.-+.+.++.+..++|... +|. .+.| |.+|+++||-- .+||-.
T Consensus 162 ~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt-~gs--~Y~a-kkiI~t~GaWi-~klL~~ 218 (399)
T KOG2820|consen 162 KARELGVIFRDGEKVKFIKFVDEEGNHVSVQTT-DGS--IYHA-KKIIFTVGAWI-NKLLPT 218 (399)
T ss_pred HHHHcCeEEecCcceeeEeeccCCCceeEEEec-cCC--eeec-ceEEEEecHHH-HhhcCc
Confidence 345678999999999999887544555566544 342 2567 79999999874 344443
No 210
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=25.65 E-value=1.3e+02 Score=30.70 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=41.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--------C------C-------------eEEEEEeCcEEEEcCCCcc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--------G------N-------------SKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--------~------g-------------~~~~v~A~keVILsaGai~ 185 (209)
...++.+...+.-.+|+.++ ++++++|++.. . + .+.++.+ +.||+|+|.--
T Consensus 651 ~eEGV~f~~~~~P~~i~~d~-~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~vi~A~G~~~ 728 (1028)
T PRK06567 651 LALGVDFKENMQPLRINVDK-YGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKT-KTVIMAIGIEN 728 (1028)
T ss_pred HHcCcEEEecCCcEEEEecC-CCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccC-CEEEEecccCC
Confidence 46789999999999998875 57999998862 1 1 3467888 59999999654
Q ss_pred cHHH
Q psy4106 186 SPQI 189 (209)
Q Consensus 186 TP~l 189 (209)
.-.+
T Consensus 729 ~~~~ 732 (1028)
T PRK06567 729 NTQF 732 (1028)
T ss_pred cccc
Confidence 4333
No 211
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=25.51 E-value=1.5e+02 Score=25.81 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=35.2
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGP 197 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG~ 197 (209)
..++++++.++.|+.+..++ .. +.|.+. +|. ++++ +-||.|.|+ .|+ +-...|++.
T Consensus 124 ~~~gv~i~~~~~v~~i~~~~--~~-~~v~~~-~g~--~~~a-~~vI~AdG~-~S~-vR~~~~~~~ 179 (391)
T PRK08020 124 AHPNVTLRCPASLQALQRDD--DG-WELTLA-DGE--EIQA-KLVIGADGA-NSQ-VRQMAGIGV 179 (391)
T ss_pred cCCCcEEEcCCeeEEEEEcC--Ce-EEEEEC-CCC--EEEe-CEEEEeCCC-Cch-hHHHcCCCc
Confidence 34689999999999987653 22 234332 443 4778 588888886 554 333445553
No 212
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=25.35 E-value=1.7e+02 Score=25.58 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=35.4
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGIG 196 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGIG 196 (209)
...+++|+.++.|+.|..++ ..+ .|++ .+|. ++.+ +-||.|.|+- |. +....|+.
T Consensus 122 ~~~gv~v~~~~~v~~i~~~~--~~v-~v~~-~~g~--~~~a-d~vI~AdG~~-S~-vr~~~g~~ 176 (403)
T PRK07333 122 EALGIDLREATSVTDFETRD--EGV-TVTL-SDGS--VLEA-RLLVAADGAR-SK-LRELAGIK 176 (403)
T ss_pred HhCCCEEEcCCEEEEEEEcC--CEE-EEEE-CCCC--EEEe-CEEEEcCCCC-hH-HHHHcCCC
Confidence 44689999999999997653 332 3443 2443 4677 5888888863 43 55555664
No 213
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=25.09 E-value=1.6e+02 Score=25.74 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=30.0
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAI 184 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai 184 (209)
.+.|++++.++.|++|..+ ...++ .++. .+.. +.+|||.|+-
T Consensus 69 ~~~gv~~~~~~~V~~id~~--~~~v~-----~~~~--~~~y-d~LVlATG~~ 110 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAE--AQVVK-----SQGN--QWQY-DKLVLATGAS 110 (377)
T ss_pred HhCCCEEECCCEEEEEECC--CCEEE-----ECCe--EEeC-CEEEECCCCC
Confidence 4578999999999999765 23222 1343 4667 5999999984
No 214
>PRK06116 glutathione reductase; Validated
Probab=24.78 E-value=1.3e+02 Score=27.16 Aligned_cols=58 Identities=7% Similarity=0.115 Sum_probs=37.4
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQI--LMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~l--Ll~SGI 195 (209)
+...++++++++.|.+|.-++ ++.+ .|++. +|+ ++.+ ..||+|.|..-.... |..+|+
T Consensus 218 L~~~GV~i~~~~~V~~i~~~~-~g~~-~v~~~-~g~--~i~~-D~Vv~a~G~~p~~~~l~l~~~g~ 277 (450)
T PRK06116 218 MEKKGIRLHTNAVPKAVEKNA-DGSL-TLTLE-DGE--TLTV-DCLIWAIGREPNTDGLGLENAGV 277 (450)
T ss_pred HHHCCcEEECCCEEEEEEEcC-CceE-EEEEc-CCc--EEEe-CEEEEeeCCCcCCCCCCchhcCc
Confidence 456789999999999997553 2322 34432 453 4677 499999997644443 344454
No 215
>PRK06475 salicylate hydroxylase; Provisional
Probab=24.47 E-value=1.1e+02 Score=26.97 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=29.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP 187 (209)
..++++|..+++|+++..++ .. +.|.+...+...++.+ .+||.|-.++|.
T Consensus 119 ~~~~i~v~~~~~v~~~~~~~--~~-v~v~~~~~~~~~~~~a--dlvIgADG~~S~ 168 (400)
T PRK06475 119 NNPGIEIKLGAEMTSQRQTG--NS-ITATIIRTNSVETVSA--AYLIACDGVWSM 168 (400)
T ss_pred hcCCcEEEECCEEEEEecCC--Cc-eEEEEEeCCCCcEEec--CEEEECCCccHh
Confidence 34689999999999997653 22 3344443222234666 445555555554
No 216
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=24.27 E-value=89 Score=28.54 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=35.1
Q ss_pred cccccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy4106 125 RAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGA 183 (209)
Q Consensus 125 ~~~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGa 183 (209)
..+|...+...+++++.+ .|..+.+++ ++.+++|+.. +| .++.| +-||=|.|.
T Consensus 157 d~~L~~~A~~~Gv~~~~g-~V~~v~~~~-~g~i~~v~~~-~g--~~i~a-d~~IDASG~ 209 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEG-TVVDVELDE-DGRITAVRLD-DG--RTIEA-DFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEET-TS--EEEEE-SEEEE-SGG
T ss_pred HHHHHHHHhcCCCEEEeC-EEEEEEEcC-CCCEEEEEEC-CC--CEEEE-eEEEECCCc
Confidence 346655445568999887 588888887 6888888765 35 35788 488888883
No 217
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=23.81 E-value=1e+02 Score=27.77 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=37.7
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH--HHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL--MVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL--l~SGI 195 (209)
....++++++++.|++|.-++ +.+ .|++ .+|+ ++.+ ..||+|.|..-...+| ..+|+
T Consensus 226 l~~~gI~v~~~~~v~~i~~~~--~~~-~v~~-~~g~--~i~~-D~vi~a~G~~p~~~~l~l~~~g~ 284 (461)
T PRK05249 226 LRDSGVTIRHNEEVEKVEGGD--DGV-IVHL-KSGK--KIKA-DCLLYANGRTGNTDGLNLENAGL 284 (461)
T ss_pred HHHcCCEEEECCEEEEEEEeC--CeE-EEEE-CCCC--EEEe-CEEEEeecCCccccCCCchhhCc
Confidence 346789999999999997553 222 2332 2443 4677 4999999987666654 34443
No 218
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=23.63 E-value=1.6e+02 Score=25.43 Aligned_cols=52 Identities=35% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcC
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSG 194 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SG 194 (209)
.....+..++.|..+.-+ + ++.+|... +|. +.| ..||+|+|+. |+.++...|
T Consensus 169 ~G~~~~~~~~~~~~~~~~--~-~~~~v~t~-~g~---i~a-~~vv~a~G~~-~~~l~~~~~ 220 (387)
T COG0665 169 LGVVIIEGGTPVTSLERD--G-RVVGVETD-GGT---IEA-DKVVLAAGAW-AGELAATLG 220 (387)
T ss_pred cCCeEEEccceEEEEEec--C-cEEEEEeC-Ccc---EEe-CEEEEcCchH-HHHHHHhcC
Confidence 333778889999988754 3 45555432 332 788 4999999976 444444444
No 219
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=23.30 E-value=56 Score=23.51 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=18.2
Q ss_pred HHHHHHcCCCCcchhhcCCCc
Q psy4106 187 PQILMVSGIGPREHLREKSKF 207 (209)
Q Consensus 187 P~lLl~SGIG~~~~L~~~gI~ 207 (209)
=++|+++|--+++.|+.+|++
T Consensus 68 krlL~q~GY~~~D~l~~lGre 88 (97)
T cd01775 68 KRLLLQVGYEERDRIEDIGRE 88 (97)
T ss_pred HHHHHHcCCCCCCcHHHhCcc
Confidence 368899999999999999875
No 220
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=23.09 E-value=1.8e+02 Score=26.11 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=28.8
Q ss_pred eEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH
Q psy4106 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQI 189 (209)
Q Consensus 137 l~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~l 189 (209)
.+|++++.|++|..++ ++ +.|.+. +|+ .+.+ +.||++.-.-..++|
T Consensus 239 ~~i~~~~~V~~I~~~~--~~-~~v~~~-~g~--~~~a-d~VI~a~p~~~~~~l 284 (463)
T PRK12416 239 TVVKKGAVTTAVSKQG--DR-YEISFA-NHE--SIQA-DYVVLAAPHDIAETL 284 (463)
T ss_pred ccEEcCCEEEEEEEcC--CE-EEEEEC-CCC--EEEe-CEEEECCCHHHHHhh
Confidence 4699999999998763 33 234332 443 3567 589988753333333
No 221
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=23.03 E-value=1.3e+02 Score=27.28 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=38.1
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQI--LMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~l--Ll~SGI 195 (209)
.++.+++|++++.|++|.-++ +.+ .|.+ .+|+ ++.++ .||++.|..-...+ |..+||
T Consensus 228 L~~~gV~i~~~~~v~~v~~~~--~~~-~v~~-~~g~--~l~~D-~vl~a~G~~pn~~~l~l~~~gl 286 (466)
T PRK07845 228 FARRGMTVLKRSRAESVERTG--DGV-VVTL-TDGR--TVEGS-HALMAVGSVPNTAGLGLEEAGV 286 (466)
T ss_pred HHHCCcEEEcCCEEEEEEEeC--CEE-EEEE-CCCc--EEEec-EEEEeecCCcCCCCCCchhhCc
Confidence 456789999999999997542 222 2333 2453 46774 89999998766665 355565
No 222
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=23.00 E-value=1.6e+02 Score=27.22 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=33.3
Q ss_pred cccccccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCC
Q psy4106 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGA 183 (209)
Q Consensus 127 ~L~~~~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGa 183 (209)
+|.....+.++++++++.|++|..++ + ...|.. .+|. .+.+ +.||+|.|+
T Consensus 271 ~l~~~~~~~gv~i~~~~~V~~I~~~~--~-~~~V~~-~~g~--~i~a-~~vViAtG~ 320 (517)
T PRK15317 271 ALEEHVKEYDVDIMNLQRASKLEPAA--G-LIEVEL-ANGA--VLKA-KTVILATGA 320 (517)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecC--C-eEEEEE-CCCC--EEEc-CEEEECCCC
Confidence 34333456689999999999997653 1 223332 2443 4677 699999998
No 223
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=22.81 E-value=1.8e+02 Score=26.08 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=36.5
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEE-eCCeEEEEEeCcEEEEcCCCcccHHH--HHHcCC
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELM-KGNSKIRVFARKEVVLSAGAINSPQI--LMVSGI 195 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~-~~g~~~~v~A~keVILsaGai~TP~l--Ll~SGI 195 (209)
++. ++|++++.|.+|.-++ + .+|.+. .++...++.++ .||++.|..-...+ |..+|+
T Consensus 221 ~~~-I~i~~~~~v~~i~~~~--~--~~v~~~~~~~~~~~i~~D-~vi~a~G~~p~~~~l~l~~~g~ 280 (460)
T PRK06292 221 SKE-FKIKLGAKVTSVEKSG--D--EKVEELEKGGKTETIEAD-YVLVATGRRPNTDGLGLENTGI 280 (460)
T ss_pred hhc-cEEEcCCEEEEEEEcC--C--ceEEEEEcCCceEEEEeC-EEEEccCCccCCCCCCcHhhCC
Confidence 445 9999999999997542 2 234432 24544567884 99999998654443 344454
No 224
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=22.80 E-value=1.3e+02 Score=27.25 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=38.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH--HHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL--MVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL--l~SGI 195 (209)
+...++++++++.|++|.-+. ++ ...|++. +++ ..+.++ .||+|.|..-...+| ..+|+
T Consensus 217 l~~~gI~i~~~~~v~~i~~~~-~~-~~~v~~~-~g~-~~i~~D-~vi~a~G~~pn~~~l~l~~~g~ 277 (450)
T TIGR01421 217 YEKEGINVHKLSKPVKVEKTV-EG-KLVIHFE-DGK-SIDDVD-ELIWAIGRKPNTKGLGLENVGI 277 (450)
T ss_pred HHHcCCEEEcCCEEEEEEEeC-Cc-eEEEEEC-CCc-EEEEcC-EEEEeeCCCcCcccCCccccCc
Confidence 356789999999999997542 22 2234442 342 357774 999999988776654 44444
No 225
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=22.34 E-value=2.2e+02 Score=25.47 Aligned_cols=47 Identities=28% Similarity=0.204 Sum_probs=31.8
Q ss_pred eEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 137 l~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
.+|+.++.|++|..++ ..+ .|+. .+|+ ++.+ +.||++.-+-..+.||
T Consensus 238 ~~i~~~~~V~~I~~~~--~~~-~v~~-~~g~--~~~a-d~VI~t~P~~~~~~ll 284 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRG--SNY-TLEL-DNGV--TVET-DSVVVTAPHKAAAGLL 284 (462)
T ss_pred CeEEcCCeEEEEEecC--CcE-EEEE-CCCc--EEEc-CEEEECCCHHHHHHHh
Confidence 5799999999998763 222 2332 2453 4677 5999988876666665
No 226
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=22.26 E-value=1.8e+02 Score=25.36 Aligned_cols=47 Identities=26% Similarity=0.210 Sum_probs=31.6
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP 187 (209)
..+|++|+.++.|+++..++ ..+ .|.+. +|. ++++ +-||.|-|+ +|+
T Consensus 122 ~~~~i~i~~~~~v~~~~~~~--~~~-~v~~~-~g~--~~~~-~lvIgADG~-~S~ 168 (384)
T PRK08849 122 QYPNLTLMCPEKLADLEFSA--EGN-RVTLE-SGA--EIEA-KWVIGADGA-NSQ 168 (384)
T ss_pred hCCCeEEECCCceeEEEEcC--CeE-EEEEC-CCC--EEEe-eEEEEecCC-Cch
Confidence 45789999999999998764 222 24443 453 5777 477777775 443
No 227
>PRK09897 hypothetical protein; Provisional
Probab=22.25 E-value=2.7e+02 Score=26.18 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=27.9
Q ss_pred eEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcc
Q psy4106 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAIN 185 (209)
Q Consensus 137 l~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~ 185 (209)
+++..++.|+.|..++ + ++.+..++....+.+ ..||||.|..-
T Consensus 124 V~v~~~~~V~~I~~~~--~---g~~V~t~~gg~~i~a-D~VVLAtGh~~ 166 (534)
T PRK09897 124 VAVYESCQVTDLQITN--A---GVMLATNQDLPSETF-DLAVIATGHVW 166 (534)
T ss_pred EEEEECCEEEEEEEeC--C---EEEEEECCCCeEEEc-CEEEECCCCCC
Confidence 7788899999997663 2 233332211134667 59999999743
No 228
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.15 E-value=1.6e+02 Score=26.75 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=36.5
Q ss_pred eEEEcCeEEEEEEeeCCCCeEEEEEEEeC-CeEEEEEeCcEEEEcCCCcccHHHH--HHcCC
Q psy4106 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKG-NSKIRVFARKEVVLSAGAINSPQIL--MVSGI 195 (209)
Q Consensus 137 l~i~~~~~V~rI~~~~~~~~a~gV~~~~~-g~~~~v~A~keVILsaGai~TP~lL--l~SGI 195 (209)
+++++++.|++|..++ +. ..|++.+. +...++.++ .||+|.|..-...+| ..+|+
T Consensus 229 v~i~~~~~v~~i~~~~--~~-~~v~~~~~~~~~~~i~~D-~vi~a~G~~pn~~~l~~~~~gl 286 (471)
T PRK06467 229 FNIMLETKVTAVEAKE--DG-IYVTMEGKKAPAEPQRYD-AVLVAVGRVPNGKLLDAEKAGV 286 (471)
T ss_pred eEEEcCCEEEEEEEcC--CE-EEEEEEeCCCcceEEEeC-EEEEeecccccCCccChhhcCc
Confidence 9999999999997553 22 33554432 334568885 999999987655543 44443
No 229
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.02 E-value=3.3e+02 Score=25.44 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=38.5
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEe--CCeEEEEE--eCc---EEEEcCCCcccHHHHH
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMK--GNSKIRVF--ARK---EVVLSAGAINSPQILM 191 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~--~g~~~~v~--A~k---eVILsaGai~TP~lLl 191 (209)
...+++|++++.|++|.- ++++..|.+.. +|+..++. ++. .||++.|..-...++.
T Consensus 190 ~~~gV~i~~~~~V~~i~~---~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~ 252 (555)
T TIGR03143 190 NHPKIEVKFNTELKEATG---DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFK 252 (555)
T ss_pred hCCCcEEEeCCEEEEEEc---CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHh
Confidence 346899999999999862 24566666653 46544433 431 3999999998777664
No 230
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=21.83 E-value=1.5e+02 Score=25.55 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=28.5
Q ss_pred CCeEEEEEEEe-CCeEEEEEeCcEEEEcCCCcccHHHH-HHcCCCCc
Q psy4106 154 SKRAVGVELMK-GNSKIRVFARKEVVLSAGAINSPQIL-MVSGIGPR 198 (209)
Q Consensus 154 ~~~a~gV~~~~-~g~~~~v~A~keVILsaGai~TP~lL-l~SGIG~~ 198 (209)
++++.|+.|.. .+.+. +.|.+|=|.+-||.=. .+.|=|+-
T Consensus 235 g~~i~g~ly~y~~~~~v-----~i~c~chg~~~~~~efv~h~~~~~~ 276 (284)
T PF07897_consen 235 GKRIEGFLYKYGKGEEV-----RIVCVCHGSFLSPAEFVKHAGGGDV 276 (284)
T ss_pred CceeeEEEEEecCCCeE-----EEEEEecCCCCCHHHHHHhcCCCCc
Confidence 67899999986 34332 5788999999999754 44454443
No 231
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.68 E-value=2.1e+02 Score=25.11 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=31.3
Q ss_pred cCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCccc
Q psy4106 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINS 186 (209)
Q Consensus 133 ~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~T 186 (209)
...+++|..++.|+.|..+. ..+ .|.+ .+|+ ++.| +-||.|.|+ +|
T Consensus 123 ~~~gv~v~~~~~v~~i~~~~--~~v-~v~~-~~g~--~~~a-~~vVgAdG~-~S 168 (405)
T PRK05714 123 HDSDIGLLANARLEQMRRSG--DDW-LLTL-ADGR--QLRA-PLVVAADGA-NS 168 (405)
T ss_pred hcCCCEEEcCCEEEEEEEcC--CeE-EEEE-CCCC--EEEe-CEEEEecCC-Cc
Confidence 34589999999999987653 222 2433 2453 4778 599999997 44
No 232
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=21.66 E-value=2.7e+02 Score=24.51 Aligned_cols=50 Identities=10% Similarity=-0.058 Sum_probs=30.4
Q ss_pred CCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccH
Q psy4106 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSP 187 (209)
Q Consensus 134 ~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP 187 (209)
..+..++.+..+..+.-.+ ...+.|.+..+|+..+++++ -||-|-| ++|.
T Consensus 115 ~~g~~~~~~~~~v~~~~~~--~~~~~V~~~~~g~~~~i~ad-lvIGADG-~~S~ 164 (390)
T TIGR02360 115 AAGLTTVYDADDVRLHDLA--GDRPYVTFERDGERHRLDCD-FIAGCDG-FHGV 164 (390)
T ss_pred hcCCeEEEeeeeEEEEecC--CCccEEEEEECCeEEEEEeC-EEEECCC-Cchh
Confidence 4567888888877765322 22345666546766678883 5555555 4553
No 233
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=21.04 E-value=1.3e+02 Score=26.89 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=36.4
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH--HHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL--MVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL--l~SGI 195 (209)
.++.++++++++.|++|.-+ ++. +.+..++. ++.++ .||+|.|..-...+| ..+|+
T Consensus 209 l~~~gV~v~~~~~v~~i~~~--~~~---v~v~~~~g--~i~~D-~vl~a~G~~pn~~~l~~~~~gl 266 (441)
T PRK08010 209 LRDQGVDIILNAHVERISHH--ENQ---VQVHSEHA--QLAVD-ALLIASGRQPATASLHPENAGI 266 (441)
T ss_pred HHhCCCEEEeCCEEEEEEEc--CCE---EEEEEcCC--eEEeC-EEEEeecCCcCCCCcCchhcCc
Confidence 45678999999999999754 232 22332222 35674 999999977665543 34454
No 234
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.64 E-value=2.3e+02 Score=25.42 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=38.8
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHHHHcCC
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSGI 195 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lLl~SGI 195 (209)
.++.++++++++.|++|. +. .|.+. +|+ .+.+ ..||+|.|..-.+.+|..+|+
T Consensus 199 l~~~gI~i~~~~~v~~i~----~~---~v~~~-~g~--~~~~-D~vl~a~G~~pn~~~l~~~gl 251 (438)
T PRK13512 199 LDKREIPYRLNEEIDAIN----GN---EVTFK-SGK--VEHY-DMIIEGVGTHPNSKFIESSNI 251 (438)
T ss_pred HHhcCCEEEECCeEEEEe----CC---EEEEC-CCC--EEEe-CEEEECcCCCcChHHHHhcCc
Confidence 456789999999999984 12 34443 343 3567 499999999887788887776
No 235
>PRK14694 putative mercuric reductase; Provisional
Probab=20.37 E-value=1.4e+02 Score=27.07 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=34.9
Q ss_pred ccCCCeEEEcCeEEEEEEeeCCCCeEEEEEEEeCCeEEEEEeCcEEEEcCCCcccHHHH
Q psy4106 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQIL 190 (209)
Q Consensus 132 ~~~~nl~i~~~~~V~rI~~~~~~~~a~gV~~~~~g~~~~v~A~keVILsaGai~TP~lL 190 (209)
..+.++++++++.|.+|..+ ++. ..|. .++. ++.++ .||+|.|..-...+|
T Consensus 228 l~~~GI~v~~~~~v~~i~~~--~~~-~~v~--~~~~--~i~~D-~vi~a~G~~pn~~~l 278 (468)
T PRK14694 228 FRREGIEVLKQTQASEVDYN--GRE-FILE--TNAG--TLRAE-QLLVATGRTPNTENL 278 (468)
T ss_pred HHhCCCEEEeCCEEEEEEEc--CCE-EEEE--ECCC--EEEeC-EEEEccCCCCCcCCC
Confidence 35678999999999998754 232 2232 2332 37774 999999988776654
Done!