RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4106
(209 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 232 bits (594), Expect = 5e-74
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 33/201 (16%)
Query: 17 PGWSYDEVRPFFIKSEDNQIENDN------IDSLYHRKGGYLTITEIPYKTPIAHAFVQS 70
GW++D ++ F K+E DN H G ++I+ + TP+ + +
Sbjct: 113 EGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLAT 172
Query: 71 GYQSGYPIV---DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAF 127
+ D+ G S+ S+ NG R S+S A+
Sbjct: 173 TQEQSEEFFFNPDMGTGHPLGISW-------------------SIASVGNGQRSSSSTAY 213
Query: 128 LHPIRRRRNLHVTKFSLVTKLIIDEKSK-----RAVGVELMKGNSKIRVFARKEVVLSAG 182
L P + R NL V + VTKL+ + R V +G V A+KEVVLSAG
Sbjct: 214 LRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAG 273
Query: 183 AINSPQILMVSGIGPREHLRE 203
++ +P +L +SGIG L
Sbjct: 274 SVGTPILLQLSGIGDENDLSS 294
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 226 bits (578), Expect = 2e-71
Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 32/201 (15%)
Query: 17 PGWSYDEVRPFFIKSEDNQIEND-------NIDSLYHRKGGYLTITEIPY---KTPIAHA 66
GW++D + + K+E + + ++ H G + +PI A
Sbjct: 133 EGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192
Query: 67 FVQSGYQSGYPIV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSR 125
+ + G P+ D G S + + + N R +R
Sbjct: 193 LMNTVSALGVPVQQDFLCGHPRGVSMIMNNLD------------------ENQVRVDAAR 234
Query: 126 AFLHPIRRRRNLHVTKFSLVTKLIIDEKS--KRAVGVELMKGNS-KIRVFARKEVVLSAG 182
A+L P +R NL + +V K++ + + +AVGV + VFA+ EV+L+AG
Sbjct: 235 AWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAG 294
Query: 183 AINSPQILMVSGIGPREHLRE 203
+ SP IL SGIG + L +
Sbjct: 295 SAISPLILEYSGIGLKSVLDQ 315
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 223 bits (570), Expect = 2e-70
Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 32/201 (15%)
Query: 17 PGWSYDEVRPFFIKSEDNQI-------ENDNIDSLYHRKGGYLTITEI---PYKTPIAHA 66
GW++D V + +++E + ++ H G + +PI A
Sbjct: 129 EGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 188
Query: 67 FVQSGYQSGYPIV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSR 125
+ + G P D G S P + + + R +R
Sbjct: 189 LMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLH------------------EDQVRSDAAR 230
Query: 126 AFLHPIRRRRNLHVTKFSLVTKLIID--EKSKRAVGVELMKGNSKIR-VFARKEVVLSAG 182
+L P +R NL V V K+++ + RAVGVE V+A+ EV+L+AG
Sbjct: 231 EWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAG 290
Query: 183 AINSPQILMVSGIGPREHLRE 203
+ SP IL SGIG + L
Sbjct: 291 SAVSPTILEYSGIGMKSILEP 311
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 212 bits (542), Expect = 3e-66
Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 30/195 (15%)
Query: 16 GPGWSYDEVRPFFIKSEDNQIEND--NIDSLYHRKGGYLTITEIPY---KTPIAHAFVQS 70
G W++D + P+ KS + + + GG + I+ P ++
Sbjct: 117 GKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKA 176
Query: 71 GYQSGYPIV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLH 129
G P++ ++ G + ++ G R +FL
Sbjct: 177 WKSMGQPLIENIYDGEMDGLTH-------------------CCDTIYRGQRSG---SFL- 213
Query: 130 PIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIR-VFARKEVVLSAGAINSPQ 188
++ + N+ + +LII+E + GV ++ FA +EV+LS G +P+
Sbjct: 214 FVKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPK 273
Query: 189 ILMVSGIGPREHLRE 203
+LM+SGIGP L
Sbjct: 274 LLMLSGIGPTRELSR 288
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 207 bits (530), Expect = 1e-64
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 27/192 (14%)
Query: 17 PGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGY 76
GW+ + P + + E N+ D+ +H G + + +P K P A + + Q+G
Sbjct: 122 TGWNAEAAWPLYKRLETNEDAGP--DAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGI 179
Query: 77 PIV-DVNGAAQT-GFSFLPVSFNSARLVMGRAWVQSVEVSMR-NGTRWSTSRAFLHPIRR 133
P G G +F +++ R +GTR S+S +++HPI
Sbjct: 180 PRAKFNTGTTVVNGANFF-------------------QINRRADGTRSSSSVSYIHPIVE 220
Query: 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNS--KIRVFARKEVVLSAGAINSPQILM 191
+ N + +L+ + +R GV+++ R+ AR EVVLS GAI++P++LM
Sbjct: 221 QENFTLLTGLRARQLVF-DADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLM 279
Query: 192 VSGIGPREHLRE 203
+SGIGP HL E
Sbjct: 280 LSGIGPAAHLAE 291
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 199 bits (509), Expect = 8e-62
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 17 PGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITE-IPYKTPIAHAFVQSGYQSG 75
W +DE+ P F ED+ + D H KGG L I +P+A AF+++G G
Sbjct: 126 RRWGWDELLPVFQAIEDHPLGGDG----IHGKGGPLPIHLPADEVSPLARAFIEAGASLG 181
Query: 76 YPIV-DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHP-IRR 133
P + N G + +++R+G R + + A+L +R
Sbjct: 182 LPRLEGHNSGEMIGVTP-------------------NSLNIRDGRRVTAADAWLTKAVRG 222
Query: 134 RRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVS 193
R+NL + S V +L ++ + +E++ VFA ++VL AGA+ SP +LM S
Sbjct: 223 RKNLTILTGSRVRRLKLEGN--QVRSLEVVGRQGSAEVFAD-QIVLCAGALESPALLMRS 279
Query: 194 GIGPREHLRE 203
GIGP + L
Sbjct: 280 GIGPHDVLDA 289
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 193 bits (492), Expect = 3e-59
Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 42/192 (21%)
Query: 16 GPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSG 75
G W D V + ED +Y +++ AF+++G
Sbjct: 126 GVDWDMDLVNQTYEWVEDTI--------VYKPNSQ-------SWQSVTKTAFLEAGVHPN 170
Query: 76 YPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRR 135
+ + + G + N + L+
Sbjct: 171 H---GFSLDHEEGTRI-------------------TGSTFDNKGTRHAADELLNK-GNSN 207
Query: 136 NLHVTKFSLVTKLIIDEKS-KRAVGVELMKGNSKIR---VFARKEVVLSAGAINSPQILM 191
NL V + V K+I A GV N V ++ EV++SAG I +PQ+L+
Sbjct: 208 NLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLL 267
Query: 192 VSGIGPREHLRE 203
+SG+GP +L
Sbjct: 268 LSGVGPESYLSS 279
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 176 bits (449), Expect = 6e-53
Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 35/193 (18%)
Query: 17 PGW--SYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQS 74
GW S+ P+ K D + G + + + ++ +
Sbjct: 116 VGWPSSWTNHAPYTSKLSSRLPSTD-----HPSTDGQRYLEQSF---NVVSQLLKGQGYN 167
Query: 75 GYPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRR 134
I D F + F NG R +L R
Sbjct: 168 QATINDNPNYKDHVFGYSAFDF-------------------LNGKRAGPVATYLQTALAR 208
Query: 135 RNLHVTKFSLVTKLIIDEKSKRAVGVEL----MKGNSKIRVFARKEVVLSAGAINSPQIL 190
N +V+ ++ + + +GV+ + N I V + V+LSAGA + +IL
Sbjct: 209 PNFTFKTNVMVSNVVRNGS--QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL 266
Query: 191 MVSGIGPREHLRE 203
SGIGP + ++
Sbjct: 267 FQSGIGPTDMIQT 279
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 56.0 bits (134), Expect = 1e-09
Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 20/182 (10%)
Query: 21 YDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYPIVD 80
E RP +K D ++ D LY + Y +K I H V + Y
Sbjct: 176 DREQRPLLVKD-DADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYK--- 231
Query: 81 VNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRNLHVT 140
Q F +P++ + + + ++
Sbjct: 232 ----GQRDFQQIPLAATRRSPTFVE---------WSSANTVFDLQNRPNTDAPEERFNLF 278
Query: 141 KFSLVTKLIIDEKSKRAVGVEL--MKGNSKIRVFARKEVVLSAGAINSPQILMVSGIGPR 198
+++ + + + + + + + A VL+AGA+++ Q+L+ SG G
Sbjct: 279 PAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV-YVLTAGAVHNTQLLVNSGFGQL 337
Query: 199 EH 200
Sbjct: 338 GR 339
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 49.7 bits (118), Expect = 2e-07
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 116 RNGTRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGN---SKIRVF 172
N + S + +L + + V + + A+ VE + +
Sbjct: 216 NNHGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEI 275
Query: 173 ARKEVVLSAGAINSPQILMVSGIG 196
+ + + L AG++ S ++L+ +
Sbjct: 276 SCRYLFLGAGSLGSTELLVRARDT 299
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 46.7 bits (110), Expect = 2e-06
Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 18/181 (9%)
Query: 17 PGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGY 76
S + +F ++ N+ + + A ++ +SG+
Sbjct: 137 SVDSNEMYNKYFPRANTGLGVNNIDQAWFES----------TEWYKFARTGRKTAQRSGF 186
Query: 77 PIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRN 136
V F ++ A + ++ + + N + S + +L
Sbjct: 187 TTAFVPNV--YDFEYMK---KEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGK 241
Query: 137 LHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI---RVFARKEVVLSAGAINSPQILMVS 193
L +T VTK+ S +V +E + + +V V +AG++ + ++L+
Sbjct: 242 LTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSM 301
Query: 194 G 194
Sbjct: 302 K 302
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 9e-06
Identities = 26/188 (13%), Positives = 63/188 (33%), Gaps = 46/188 (24%)
Query: 22 DEVRPFFIKSEDNQI--ENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYPIV 79
D + K E + I D + L T + + + FV+ + Y
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTL-----RLFWTLLSKQEEMVQKFVEEVLRINYK-- 92
Query: 80 DVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRNLHV 139
FL + + + + + + R+ ++ ++ F +V
Sbjct: 93 -----------FLMSPIKTEQR--QPSMMTRMYIEQRDRL-YNDNQVF-------AKYNV 131
Query: 140 TKFSLVTKL---IIDEKSKRAVGVELMKGNSK----IRVFARKEVV---------LSAGA 183
++ KL +++ + + V ++ + G+ K + V +V L+
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 184 INSPQILM 191
NSP+ ++
Sbjct: 192 CNSPETVL 199
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 36.5 bits (85), Expect = 0.004
Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 59 YKTPIAHAFVQSGYQSGYPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNG 118
++ P + SG ++ P ++ A G + G ++ + +
Sbjct: 156 WEPPFDDGLMYSGGENAAPFNEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVETAEK- 214
Query: 119 TRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVV 178
+R + + V L+ D+ + R VG+ + ++ V AR+ VV
Sbjct: 215 ----------LGVRAEYD---MR---VQTLVTDD-TGRVVGIVAKQYGKEVAVRARRGVV 257
Query: 179 LSAG 182
L+ G
Sbjct: 258 LATG 261
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 36.2 bits (84), Expect = 0.005
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 145 VTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAG 182
V KL++++ VG + ++ + K VVL+ G
Sbjct: 273 VVKLVVND-DHSVVGAVVHGKHTGYYMIGAKSVVLATG 309
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 33.9 bits (78), Expect = 0.033
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 145 VTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAG 182
V +++ D S + GV + + V VV++AG
Sbjct: 278 VVRILEDA-SGKVTGVLVKGEYTGYYVIKADAVVIAAG 314
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 32.0 bits (73), Expect = 0.12
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 133 RRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKIRVFARKEVVLSAG 182
+RN+ + + +++ D+K G+ + V+L+ G
Sbjct: 266 VKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKADAVILATG 314
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.81
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 26/84 (30%)
Query: 109 QSVEVSMRNGTRWSTSRAFL---HPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKG 165
+ VE+S+ NG ++ + P ++L+ L L K+K G++
Sbjct: 364 KQVEISLVNG-----AKNLVVSGPP----QSLY----GLNLTL---RKAKAPSGLD---- 403
Query: 166 NSKIRVFARKEVVLSAG--AINSP 187
S+I F+ +++ S + SP
Sbjct: 404 QSRIP-FSERKLKFSNRFLPVASP 426
Score = 28.1 bits (62), Expect = 2.7
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 29/111 (26%)
Query: 64 AHAFVQSGY-QSGYPIVDV--NGAAQTG-------FS---------FLPVS--FNSARLV 102
A V SG QS Y + A +G FS FLPV+ F+S +
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH--L 431
Query: 103 MGRAWVQSVEVSMRNGTRWSTSRAFLH-PI---RRRRNLHVTKFSLVTKLI 149
+ A + ++N ++ + P+ +L V S+ +++
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKD--IQIPVYDTFDGSDLRVLSGSISERIV 480
Score = 27.3 bits (60), Expect = 4.4
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 154 SKRAVGVELMKGNSKIRVFARKEVVLSAGAINSPQILMVSG-----IGPREHLREKSK 206
++ V + K NS + A K+V +S +N + L+VSG G LR K+K
Sbjct: 345 TQEQVQDYVNKTNS--HLPAGKQVEISL--VNGAKNLVVSGPPQSLYGLNLTLR-KAK 397
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 27.5 bits (62), Expect = 3.0
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 47 RKGGYLTITEIPYKTPIAHAFVQSGYQSGYPIVDVNG 83
GG + +P K + + + G + GY + D+
Sbjct: 170 NPGGKV-ALYLPDKEKLLNVIKERGIKLGYSVKDIKF 205
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 3.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 11 VAYV------EGPGWSYDEVRPFFIKSEDNQIENDNIDS---LYHR 47
+ ++ G GW D + PF E IE ++IDS HR
Sbjct: 550 IEFIYDTEKNGGLGWDLDAIIPFAAIPE-QGIELEHIDSKSEFAHR 594
>1szq_A 2-methylcitrate dehydratase; propionate catabolism, 2-methylcitric
acid cycle structural genomics target, NYSGXRC, PSI;
2.70A {Escherichia coli} SCOP: e.44.1.1
Length = 483
Score = 26.5 bits (58), Expect = 6.8
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 105 RAWVQSVEVSMRNGTRWS--TSRAFLHPIRRR---RNLHVTKFSLVTKLIIDEKSKRAV 158
RA ++ + +GTR+ + RRR V KF + + ++ +
Sbjct: 401 RAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRI 459
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.399
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,171,344
Number of extensions: 179579
Number of successful extensions: 428
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 33
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)