RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4106
(209 letters)
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 91.9 bits (227), Expect = 1e-22
Identities = 44/200 (22%), Positives = 71/200 (35%), Gaps = 30/200 (15%)
Query: 17 PGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYK----------TPIAHA 66
GW++D V + +++E + N + H +PI A
Sbjct: 127 EGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 186
Query: 67 FVQSGYQSGYPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+ + G P F + ++ +R
Sbjct: 187 LMSAVEDRGVPTKK--------------DFGCGDPHGVSMFPNTLHEDQVR---SDAARE 229
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKSK--RAVGVELMKGNSKI-RVFARKEVVLSAGA 183
+L P +R NL V V K+++ + RAVGVE V+A+ EV+L+AG+
Sbjct: 230 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGS 289
Query: 184 INSPQILMVSGIGPREHLRE 203
SP IL SGIG + L
Sbjct: 290 AVSPTILEYSGIGMKSILEP 309
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 86.5 bits (213), Expect = 1e-20
Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 30/200 (15%)
Query: 17 PGWSYDEVRPFFIKSEDNQIEND-------NIDSLYHRKGGYLTIT---EIPYKTPIAHA 66
GW++D + + K+E + + ++ H G + +PI A
Sbjct: 133 EGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKA 192
Query: 67 FVQSGYQSGYPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRA 126
+ + G P+ + N R +RA
Sbjct: 193 LMNTVSALGVPVQQDFLCGHPRG-----------------VSMIMNNLDENQVRVDAARA 235
Query: 127 FLHPIRRRRNLHVTKFSLVTKLIIDEKS--KRAVGVELMKGNS-KIRVFARKEVVLSAGA 183
+L P +R NL + +V K++ + + +AVGV + VFA+ EV+L+AG+
Sbjct: 236 WLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGS 295
Query: 184 INSPQILMVSGIGPREHLRE 203
SP IL SGIG + L +
Sbjct: 296 AISPLILEYSGIGLKSVLDQ 315
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 83.9 bits (206), Expect = 8e-20
Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 18/179 (10%)
Query: 19 WSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSGYPI 78
S + +F ++ E A + ++G
Sbjct: 131 DSSEMYDRYFPRANSM----------LRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGT 180
Query: 79 VDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRRNLH 138
V V G+ + + + + N + S + +L +
Sbjct: 181 VFVPNVYDFGYMQREAAGEVPKSALATEVIY-----GNNHGKQSLDKTYLAAALGTGKVT 235
Query: 139 VTKFSLVTKLIIDEKSKRAVGVELMKGNSKI---RVFARKEVVLSAGAINSPQILMVSG 194
+ V + + A+ VE + K+ + + + + L AG++ S ++L+ +
Sbjct: 236 IQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR 294
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 83.5 bits (205), Expect = 1e-19
Identities = 25/194 (12%), Positives = 55/194 (28%), Gaps = 24/194 (12%)
Query: 16 GPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSG 75
G + P F + + + D+ D+ T E Y F +S +
Sbjct: 121 GMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAE-SYFQTGTDQFKESIRHNL 179
Query: 76 YP-IVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPI--- 131
+ Q F +P++ WS++
Sbjct: 180 VLNKLAEEYKGQRDFQQIPLA---------------ATRRSPTFVEWSSANTVFDLQNRP 224
Query: 132 ---RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELM-KGNSKIRVFARKEVVLSAGAINSP 187
++ +++ + + + + + VL+AGA+++
Sbjct: 225 NTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNT 284
Query: 188 QILMVSGIGPREHL 201
Q+L+ SG G
Sbjct: 285 QLLVNSGFGQLGRP 298
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 80.5 bits (197), Expect = 1e-18
Identities = 30/206 (14%), Positives = 60/206 (29%), Gaps = 28/206 (13%)
Query: 1 MSPNLVFRQTVAYVEGPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYK 60
S N + +++ + + + G + +
Sbjct: 92 TSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFN- 150
Query: 61 TPIAHAFVQSGYQSGYPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTR 120
+ ++ + I D NG R
Sbjct: 151 --VVSQLLKGQGYNQATINDNPNYKDH-------------------VFGYSAFDFLNGKR 189
Query: 121 WSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGVEL----MKGNSKIRVFARKE 176
+L R N +V+ ++ + + +GV+ + N I V +
Sbjct: 190 AGPVATYLQTALARPNFTFKTNVMVSNVVRNGS--QILGVQTNDPTLGPNGFIPVTPKGR 247
Query: 177 VVLSAGAINSPQILMVSGIGPREHLR 202
V+LSAGA + +IL SGIGP + ++
Sbjct: 248 VILSAGAFGTSRILFQSGIGPTDMIQ 273
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 78.8 bits (193), Expect = 4e-18
Identities = 26/185 (14%), Positives = 58/185 (31%), Gaps = 8/185 (4%)
Query: 12 AYVEGPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSG 71
V ++E+ P +E ++ E A ++
Sbjct: 118 MAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTA 177
Query: 72 YQSGYPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPI 131
+SG+ V + + + +G + N + S + +L
Sbjct: 178 QRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIY-----GNNAGKKSLDKTYLAQA 232
Query: 132 RRRRNLHVTKFSLVTKLIIDEKSKRAVGVELMKGNSKI---RVFARKEVVLSAGAINSPQ 188
L +T VTK+ S +V +E + + +V V +AG++ + +
Sbjct: 233 AATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSK 292
Query: 189 ILMVS 193
+L+
Sbjct: 293 LLVSM 297
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 67.2 bits (163), Expect = 6e-14
Identities = 38/192 (19%), Positives = 57/192 (29%), Gaps = 42/192 (21%)
Query: 16 GPGWSYDEVRPFFIKSEDNQIENDNIDSLYHRKGGYLTITEIPYKTPIAHAFVQSGYQSG 75
G W D V + ED + N S KT A V +
Sbjct: 126 GVDWDMDLVNQTYEWVEDTIVYKPNSQSWQS-----------VTKTAFLEAGVHPNHGF- 173
Query: 76 YPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLHPIRRRR 135
+ + S + + L
Sbjct: 174 --------------------------SLDHEEGTRITGSTFDNKGTRHAADELLNKGNSN 207
Query: 136 NLHVTKFSLVTKLIIDEKSK-RAVGVELMKGNSKIRVF---ARKEVVLSAGAINSPQILM 191
NL V + V K+I A GV N ++ EV++SAG I +PQ+L+
Sbjct: 208 NLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLL 267
Query: 192 VSGIGPREHLRE 203
+SG+GP +L
Sbjct: 268 LSGVGPESYLSS 279
>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 381
Score = 25.2 bits (54), Expect = 6.6
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 108 VQSVEVSMRNGTRWSTSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGV 160
++S+ SM ++ RA + R +L +++ + ++E+ A
Sbjct: 286 LRSILRSMGMEDAFNKGRANFSGMSERNDLFLSEVFHQAMVDVNEEGTEAAAG 338
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 25.1 bits (54), Expect = 8.0
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 70 SGYQSGYPIVDVNGAAQTGFSFLPVSFNSARLVMGRAWVQSVEVSMRNGTRWSTSRAFLH 129
+G + Q SFL N ++ ++ GT A +
Sbjct: 148 EDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDY 207
Query: 130 PIRRRRNLHVTKFSLVTK 147
I R VT LV K
Sbjct: 208 AIEHGRK-SVT---LVHK 221
>g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 358
Score = 24.8 bits (53), Expect = 9.2
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 123 TSRAFLHPIRRRRNLHVTKFSLVTKLIIDEKSKRAVGV--ELMKGNSKIRVFA------- 173
TS A L I N+ V++ + +DE RA + + R+
Sbjct: 284 TSHADLSGISNHSNIQVSEMVHKAVVEVDESGTRAAAATGTIFTFRNSQRLVFNRPFLMF 343
Query: 174 -RKEVVLSAGAINSP 187
+L G +N P
Sbjct: 344 IVDNNILFLGKVNRP 358
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.399
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 760,964
Number of extensions: 33199
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 16
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)