Query psy4109
Match_columns 77
No_of_seqs 105 out of 692
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:13:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1541|consensus 99.9 4.5E-24 9.8E-29 150.0 6.1 75 1-75 78-152 (270)
2 PLN02232 ubiquinone biosynthes 99.4 1E-12 2.2E-17 86.4 5.1 63 1-75 3-73 (160)
3 COG2226 UbiE Methylase involve 99.3 1.3E-12 2.7E-17 92.1 4.5 62 1-74 81-147 (238)
4 PF08241 Methyltransf_11: Meth 99.3 8.2E-12 1.8E-16 72.8 5.1 63 1-75 25-89 (95)
5 PF01209 Ubie_methyltran: ubiE 99.2 1.8E-11 4E-16 85.3 3.6 62 1-74 78-144 (233)
6 PLN02233 ubiquinone biosynthes 99.1 7.4E-11 1.6E-15 82.9 5.0 62 1-74 104-173 (261)
7 PRK05785 hypothetical protein; 99.1 1.4E-10 2.9E-15 80.2 5.6 59 1-74 80-138 (226)
8 PRK10258 biotin biosynthesis p 99.1 2E-10 4.4E-15 79.1 5.8 62 1-74 70-131 (251)
9 PF13649 Methyltransf_25: Meth 99.0 3.1E-10 6.7E-15 68.7 3.5 64 1-74 30-98 (101)
10 TIGR03587 Pse_Me-ase pseudamin 99.0 1.7E-09 3.8E-14 73.8 6.0 63 1-74 73-135 (204)
11 PRK14103 trans-aconitate 2-met 98.8 3.6E-09 7.8E-14 73.4 4.5 59 1-74 59-117 (255)
12 PRK06202 hypothetical protein; 98.7 2.6E-08 5.7E-13 68.1 5.9 64 1-74 94-159 (232)
13 PRK01683 trans-aconitate 2-met 98.7 1.8E-08 4E-13 69.6 5.1 61 1-74 61-121 (258)
14 KOG1540|consensus 98.7 2.4E-08 5.3E-13 71.9 4.6 50 1-51 136-193 (296)
15 PLN02244 tocopherol O-methyltr 98.7 3.4E-08 7.5E-13 71.7 4.9 62 1-74 147-214 (340)
16 COG4106 Tam Trans-aconitate me 98.7 3E-08 6.4E-13 70.2 4.3 49 1-51 60-108 (257)
17 PRK11873 arsM arsenite S-adeno 98.6 6.6E-08 1.4E-12 67.4 5.2 62 1-74 108-174 (272)
18 smart00138 MeTrc Methyltransfe 98.6 3.7E-08 8E-13 69.6 3.4 65 1-75 138-234 (264)
19 TIGR02081 metW methionine bios 98.6 9.2E-08 2E-12 64.0 4.8 48 1-50 42-90 (194)
20 PLN02396 hexaprenyldihydroxybe 98.6 4E-08 8.7E-13 71.6 3.2 62 1-74 159-226 (322)
21 TIGR02072 BioC biotin biosynth 98.6 1.2E-07 2.5E-12 63.5 5.2 62 1-74 64-126 (240)
22 PLN02336 phosphoethanolamine N 98.6 1.1E-07 2.3E-12 71.1 5.3 62 1-74 295-360 (475)
23 PLN02490 MPBQ/MSBQ methyltrans 98.6 9.8E-08 2.1E-12 70.2 4.8 62 1-74 143-206 (340)
24 PF13847 Methyltransf_31: Meth 98.6 1.4E-07 3E-12 60.7 4.9 61 1-74 34-101 (152)
25 PRK11036 putative S-adenosyl-L 98.5 6.1E-08 1.3E-12 67.3 3.1 62 1-74 72-140 (255)
26 PTZ00098 phosphoethanolamine N 98.5 2.5E-07 5.4E-12 65.1 5.6 64 1-74 81-147 (263)
27 TIGR02752 MenG_heptapren 2-hep 98.5 1.7E-07 3.7E-12 63.6 4.5 62 1-74 76-142 (231)
28 PRK06922 hypothetical protein; 98.5 2.4E-07 5.3E-12 73.2 5.9 74 1-75 448-529 (677)
29 PRK15451 tRNA cmo(5)U34 methyl 98.5 4.8E-08 1E-12 67.8 1.5 63 1-75 88-156 (247)
30 PRK11207 tellurite resistance 98.4 4.1E-07 8.8E-12 61.4 5.2 64 1-75 58-126 (197)
31 TIGR00740 methyltransferase, p 98.4 1.2E-07 2.6E-12 65.1 2.4 62 1-74 85-152 (239)
32 PRK08317 hypothetical protein; 98.4 6.7E-07 1.5E-11 59.6 5.4 62 1-74 50-115 (241)
33 PRK11088 rrmA 23S rRNA methylt 98.4 5.4E-07 1.2E-11 63.3 4.9 43 1-44 118-160 (272)
34 PF08242 Methyltransf_12: Meth 98.4 1.3E-08 2.9E-13 60.9 -2.8 63 1-74 26-94 (99)
35 PF12847 Methyltransf_18: Meth 98.4 5.1E-07 1.1E-11 54.5 3.9 65 1-74 31-102 (112)
36 KOG3010|consensus 98.3 1.2E-06 2.6E-11 62.5 4.1 62 1-75 61-128 (261)
37 PRK15068 tRNA mo(5)U34 methylt 98.3 1.4E-06 3.1E-11 63.2 4.5 61 1-74 151-217 (322)
38 PLN02336 phosphoethanolamine N 98.2 3E-06 6.5E-11 63.3 5.5 66 1-75 65-134 (475)
39 TIGR00477 tehB tellurite resis 98.2 4E-06 8.7E-11 56.5 5.5 64 1-75 58-125 (195)
40 PF07021 MetW: Methionine bios 98.2 2.1E-06 4.6E-11 59.1 3.8 58 1-67 42-100 (193)
41 PRK12335 tellurite resistance 98.1 7.5E-06 1.6E-10 58.0 5.1 64 1-75 148-215 (287)
42 TIGR00452 methyltransferase, p 98.1 5.5E-06 1.2E-10 60.3 4.5 62 1-75 150-217 (314)
43 smart00828 PKS_MT Methyltransf 98.1 5.8E-06 1.3E-10 55.8 4.3 61 1-74 29-95 (224)
44 TIGR02021 BchM-ChlM magnesium 98.1 5.8E-06 1.2E-10 56.0 4.3 61 1-74 83-149 (219)
45 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 1.2E-05 2.6E-10 53.5 5.0 49 1-50 70-121 (223)
46 PRK00216 ubiE ubiquinone/menaq 98.0 1.6E-05 3.5E-10 53.3 5.2 49 1-50 82-136 (239)
47 PF05401 NodS: Nodulation prot 97.9 1.7E-05 3.8E-10 55.0 4.5 64 1-74 71-137 (201)
48 PRK00121 trmB tRNA (guanine-N( 97.9 4.1E-06 9E-11 56.8 1.0 71 1-74 70-147 (202)
49 PF13489 Methyltransf_23: Meth 97.8 7.9E-06 1.7E-10 51.6 1.6 57 1-74 50-106 (161)
50 KOG2940|consensus 97.8 1.1E-05 2.5E-10 58.0 2.4 50 1-51 101-153 (325)
51 TIGR00537 hemK_rel_arch HemK-r 97.8 6.1E-05 1.3E-09 49.6 5.7 72 1-75 47-132 (179)
52 TIGR03438 probable methyltrans 97.8 5.3E-05 1.1E-09 54.3 5.1 66 1-75 94-169 (301)
53 PRK11705 cyclopropane fatty ac 97.8 4.4E-05 9.6E-10 56.7 4.7 62 1-75 196-259 (383)
54 PLN02585 magnesium protoporphy 97.7 6.6E-05 1.4E-09 54.7 4.6 45 1-49 172-226 (315)
55 PRK07580 Mg-protoporphyrin IX 97.7 6.7E-05 1.4E-09 50.5 4.4 58 1-71 91-154 (230)
56 KOG1331|consensus 97.5 7.3E-05 1.6E-09 54.4 2.6 64 1-74 71-134 (293)
57 COG4976 Predicted methyltransf 97.5 2.5E-05 5.4E-10 56.0 -0.0 51 1-51 153-204 (287)
58 TIGR02469 CbiT precorrin-6Y C5 97.5 0.00038 8.2E-09 42.1 5.0 60 1-74 49-113 (124)
59 PLN03075 nicotianamine synthas 97.4 0.00015 3.2E-09 52.8 3.6 63 1-74 155-224 (296)
60 KOG4300|consensus 97.4 0.00018 4E-09 50.9 4.0 50 1-51 105-161 (252)
61 TIGR01177 conserved hypothetic 97.4 0.0005 1.1E-08 49.6 6.3 71 1-74 210-285 (329)
62 TIGR03840 TMPT_Se_Te thiopurin 97.4 0.00067 1.5E-08 46.7 6.1 65 1-75 62-144 (213)
63 TIGR01983 UbiG ubiquinone bios 97.4 0.00018 3.9E-09 48.4 3.1 62 1-74 73-140 (224)
64 PRK14967 putative methyltransf 97.4 0.00048 1E-08 47.0 5.3 72 1-74 65-150 (223)
65 PRK00107 gidB 16S rRNA methylt 97.4 0.00025 5.3E-09 48.1 3.6 58 1-75 75-137 (187)
66 COG2230 Cfa Cyclopropane fatty 97.3 0.00025 5.3E-09 51.4 3.8 62 1-75 101-168 (283)
67 PRK09489 rsmC 16S ribosomal RN 97.3 0.00071 1.5E-08 49.7 6.1 66 1-75 226-295 (342)
68 cd02440 AdoMet_MTases S-adenos 97.3 0.001 2.2E-08 37.5 5.1 64 1-74 27-95 (107)
69 PF02353 CMAS: Mycolic acid cy 97.3 0.00019 4.2E-09 51.2 2.5 61 1-74 91-157 (273)
70 TIGR00138 gidB 16S rRNA methyl 97.3 0.00044 9.6E-09 46.4 4.0 41 1-43 72-117 (181)
71 TIGR00091 tRNA (guanine-N(7)-) 97.2 0.00025 5.5E-09 47.6 2.5 70 1-75 46-124 (194)
72 PHA03411 putative methyltransf 97.2 0.00084 1.8E-08 48.6 5.3 47 1-49 94-140 (279)
73 PRK05134 bifunctional 3-demeth 97.2 0.00047 1E-08 46.8 3.7 49 1-50 76-129 (233)
74 COG2227 UbiG 2-polyprenyl-3-me 97.2 0.00027 5.8E-09 50.3 2.4 51 1-52 87-141 (243)
75 PRK15001 SAM-dependent 23S rib 97.2 0.0011 2.4E-08 49.6 5.6 67 1-75 258-332 (378)
76 PF05175 MTS: Methyltransferas 97.1 0.0011 2.5E-08 43.6 4.8 66 1-74 61-131 (170)
77 PRK14968 putative methyltransf 97.1 0.0019 4.1E-08 41.9 5.8 72 1-74 51-139 (188)
78 PF01170 UPF0020: Putative RNA 97.0 0.0011 2.3E-08 44.5 4.1 67 1-75 67-139 (179)
79 PRK00811 spermidine synthase; 97.0 0.00084 1.8E-08 47.9 3.8 66 1-75 106-183 (283)
80 TIGR03534 RF_mod_PrmC protein- 97.0 0.0014 3E-08 44.5 4.5 73 1-75 117-209 (251)
81 PRK14121 tRNA (guanine-N(7)-)- 97.0 0.00096 2.1E-08 50.2 3.8 67 1-75 152-227 (390)
82 PRK00377 cbiT cobalt-precorrin 97.0 0.0012 2.5E-08 44.4 3.8 43 1-43 71-119 (198)
83 KOG1270|consensus 96.9 0.001 2.3E-08 48.2 3.6 59 1-74 117-186 (282)
84 PHA03412 putative methyltransf 96.9 0.0011 2.4E-08 47.1 3.5 43 1-45 82-124 (241)
85 PRK13944 protein-L-isoaspartat 96.9 0.00075 1.6E-08 45.7 2.5 47 1-48 103-155 (205)
86 PRK09328 N5-glutamine S-adenos 96.9 0.0026 5.6E-08 44.0 5.2 41 1-43 138-183 (275)
87 TIGR03533 L3_gln_methyl protei 96.9 0.0028 6.1E-08 45.2 5.4 41 1-43 151-197 (284)
88 PRK13942 protein-L-isoaspartat 96.9 0.0018 4E-08 44.1 4.3 44 1-45 107-155 (212)
89 PRK11805 N5-glutamine S-adenos 96.9 0.0031 6.6E-08 45.6 5.6 72 1-74 163-254 (307)
90 PRK01581 speE spermidine synth 96.8 0.0014 3.1E-08 49.2 3.7 69 1-75 180-260 (374)
91 smart00650 rADc Ribosomal RNA 96.8 0.0029 6.2E-08 41.4 4.4 45 1-46 41-88 (169)
92 PRK14966 unknown domain/N5-glu 96.7 0.0055 1.2E-07 46.7 6.1 42 1-43 281-327 (423)
93 PF03291 Pox_MCEL: mRNA cappin 96.7 0.0034 7.4E-08 46.1 4.6 68 1-75 91-178 (331)
94 TIGR00536 hemK_fam HemK family 96.5 0.0065 1.4E-07 43.0 5.3 41 1-43 144-190 (284)
95 PRK08287 cobalt-precorrin-6Y C 96.5 0.0046 9.9E-08 40.9 4.1 42 1-45 61-107 (187)
96 PRK11188 rrmJ 23S rRNA methylt 96.5 0.0022 4.7E-08 43.9 2.4 54 17-74 92-156 (209)
97 PRK03612 spermidine synthase; 96.4 0.0023 4.9E-08 49.3 2.6 68 1-74 327-406 (521)
98 PF03848 TehB: Tellurite resis 96.4 0.0056 1.2E-07 42.0 4.2 62 1-73 58-123 (192)
99 PRK13255 thiopurine S-methyltr 96.4 0.013 2.7E-07 40.5 6.0 65 1-75 65-147 (218)
100 PF13659 Methyltransf_26: Meth 96.4 0.002 4.4E-08 38.9 1.6 70 1-74 29-106 (117)
101 TIGR00406 prmA ribosomal prote 96.3 0.0081 1.8E-07 42.8 4.6 58 1-75 188-251 (288)
102 PRK04457 spermidine synthase; 96.2 0.0041 8.9E-08 43.9 2.5 66 1-75 96-169 (262)
103 PRK00312 pcm protein-L-isoaspa 96.1 0.008 1.7E-07 40.5 3.6 47 1-48 106-157 (212)
104 TIGR00080 pimt protein-L-isoas 96.1 0.0063 1.4E-07 41.2 3.1 45 1-46 108-157 (215)
105 PRK01544 bifunctional N5-gluta 96.1 0.017 3.7E-07 44.4 5.6 41 1-43 168-214 (506)
106 COG1041 Predicted DNA modifica 96.0 0.023 5.1E-07 42.3 6.0 72 1-75 225-302 (347)
107 PRK14904 16S rRNA methyltransf 96.0 0.015 3.2E-07 43.8 5.0 39 1-41 281-324 (445)
108 TIGR02716 C20_methyl_CrtF C-20 95.9 0.021 4.6E-07 40.6 5.2 62 1-75 179-246 (306)
109 TIGR00438 rrmJ cell division p 95.9 0.01 2.2E-07 39.3 3.3 64 1-75 63-138 (188)
110 PRK10611 chemotaxis methyltran 95.9 0.025 5.4E-07 40.9 5.6 46 19-74 207-253 (287)
111 TIGR00417 speE spermidine synt 95.7 0.014 3E-07 41.2 3.5 67 1-74 102-177 (270)
112 KOG2361|consensus 95.6 0.037 8.1E-07 39.9 5.5 65 1-74 103-174 (264)
113 TIGR03704 PrmC_rel_meth putati 95.5 0.039 8.4E-07 38.7 5.2 43 1-43 116-161 (251)
114 PLN02366 spermidine synthase 95.4 0.021 4.6E-07 41.5 3.7 66 1-75 121-198 (308)
115 PRK13256 thiopurine S-methyltr 95.4 0.069 1.5E-06 37.5 6.0 65 1-75 71-155 (226)
116 PRK10901 16S rRNA methyltransf 95.3 0.056 1.2E-06 40.5 5.8 40 1-41 274-319 (427)
117 PRK00517 prmA ribosomal protei 95.2 0.019 4.2E-07 39.9 2.8 57 1-74 148-204 (250)
118 PRK13168 rumA 23S rRNA m(5)U19 95.1 0.013 2.8E-07 44.0 2.0 42 1-42 325-374 (443)
119 COG0500 SmtA SAM-dependent met 95.0 0.12 2.7E-06 29.2 5.4 48 1-48 78-132 (257)
120 PRK04266 fibrillarin; Provisio 94.7 0.053 1.1E-06 37.7 4.0 42 1-43 102-149 (226)
121 PRK14901 16S rRNA methyltransf 94.7 0.063 1.4E-06 40.3 4.6 40 1-41 283-331 (434)
122 KOG1975|consensus 94.7 0.037 8E-07 41.6 3.3 67 1-74 146-228 (389)
123 PRK14903 16S rRNA methyltransf 94.6 0.039 8.4E-07 41.6 3.2 40 1-41 268-313 (431)
124 PRK04148 hypothetical protein; 94.6 0.082 1.8E-06 34.5 4.3 58 1-74 45-102 (134)
125 PRK13943 protein-L-isoaspartat 94.4 0.035 7.7E-07 40.7 2.6 44 1-45 111-159 (322)
126 PLN02672 methionine S-methyltr 94.2 0.041 8.8E-07 46.2 2.8 48 1-50 148-216 (1082)
127 PF05891 Methyltransf_PK: AdoM 94.0 0.09 2E-06 37.0 3.9 64 1-74 84-152 (218)
128 PRK00274 ksgA 16S ribosomal RN 94.0 0.043 9.3E-07 38.8 2.3 43 1-44 70-114 (272)
129 PF01739 CheR: CheR methyltran 93.9 0.073 1.6E-06 36.4 3.2 46 19-74 121-166 (196)
130 PRK14896 ksgA 16S ribosomal RN 93.8 0.076 1.7E-06 37.2 3.3 43 1-46 57-102 (258)
131 PLN02823 spermine synthase 93.8 0.082 1.8E-06 39.0 3.5 43 1-43 133-184 (336)
132 PRK14902 16S rRNA methyltransf 93.7 0.13 2.7E-06 38.7 4.5 42 1-42 281-327 (444)
133 PRK03522 rumB 23S rRNA methylu 93.2 0.038 8.3E-07 39.7 1.0 41 1-42 201-247 (315)
134 PRK07402 precorrin-6B methylas 93.2 0.098 2.1E-06 34.8 2.9 41 1-41 70-115 (196)
135 PRK11783 rlmL 23S rRNA m(2)G24 93.1 0.24 5.3E-06 39.5 5.4 66 1-74 262-335 (702)
136 TIGR00446 nop2p NOL1/NOP2/sun 93.1 0.21 4.6E-06 35.1 4.6 40 1-41 102-146 (264)
137 PRK11783 rlmL 23S rRNA m(2)G24 92.9 0.09 2E-06 41.9 2.7 43 1-43 567-616 (702)
138 KOG2352|consensus 92.8 0.38 8.3E-06 37.4 5.9 72 1-74 77-152 (482)
139 TIGR00563 rsmB ribosomal RNA s 92.8 0.13 2.7E-06 38.6 3.2 40 1-41 268-315 (426)
140 COG2813 RsmC 16S RNA G1207 met 92.7 0.32 7E-06 35.7 5.1 66 1-75 188-258 (300)
141 COG2890 HemK Methylase of poly 92.4 0.11 2.4E-06 37.2 2.4 46 1-51 140-190 (280)
142 COG0116 Predicted N6-adenine-s 92.4 0.13 2.9E-06 38.8 2.9 42 1-43 260-307 (381)
143 PF11968 DUF3321: Putative met 92.3 0.091 2E-06 37.0 1.8 47 19-74 86-135 (219)
144 COG4123 Predicted O-methyltran 92.2 0.14 2.9E-06 36.7 2.6 63 1-65 74-143 (248)
145 PTZ00146 fibrillarin; Provisio 92.1 0.23 5E-06 36.2 3.8 43 1-44 163-211 (293)
146 PF00891 Methyltransf_2: O-met 92.0 0.38 8.3E-06 32.8 4.6 56 5-74 133-188 (241)
147 PF06859 Bin3: Bicoid-interact 92.0 0.072 1.6E-06 33.9 0.9 35 35-74 1-35 (110)
148 KOG3420|consensus 91.8 0.82 1.8E-05 31.2 5.9 44 1-45 77-124 (185)
149 KOG3045|consensus 91.2 0.37 8E-06 35.5 4.0 44 18-74 212-255 (325)
150 PF01135 PCMT: Protein-L-isoas 91.0 0.22 4.8E-06 34.3 2.6 44 1-45 103-151 (209)
151 PLN02781 Probable caffeoyl-CoA 90.5 0.21 4.5E-06 34.7 2.1 42 1-42 99-151 (234)
152 PF05219 DREV: DREV methyltran 90.4 0.69 1.5E-05 33.5 4.8 59 1-75 122-180 (265)
153 PF08003 Methyltransf_9: Prote 90.2 0.27 5.9E-06 36.3 2.6 36 27-74 175-210 (315)
154 KOG2899|consensus 90.1 0.69 1.5E-05 33.7 4.6 39 31-74 162-200 (288)
155 PF03141 Methyltransf_29: Puta 90.0 0.17 3.7E-06 39.5 1.5 49 2-51 149-198 (506)
156 COG4122 Predicted O-methyltran 89.9 0.12 2.7E-06 36.2 0.6 42 1-42 90-139 (219)
157 TIGR00755 ksgA dimethyladenosi 89.9 0.34 7.3E-06 33.6 2.8 43 1-46 57-105 (253)
158 COG2521 Predicted archaeal met 89.5 0.29 6.3E-06 35.5 2.2 49 18-74 187-236 (287)
159 TIGR00479 rumA 23S rRNA (uraci 89.2 0.14 3.1E-06 38.1 0.5 42 1-42 320-369 (431)
160 COG2518 Pcm Protein-L-isoaspar 89.2 0.54 1.2E-05 32.9 3.4 44 1-45 100-148 (209)
161 PTZ00338 dimethyladenosine tra 88.8 0.39 8.4E-06 34.7 2.5 43 1-46 64-112 (294)
162 PRK10909 rsmD 16S rRNA m(2)G96 88.3 0.21 4.6E-06 34.1 0.9 44 1-44 82-130 (199)
163 KOG1269|consensus 87.5 0.61 1.3E-05 34.9 2.9 43 19-73 163-205 (364)
164 PF03492 Methyltransf_7: SAM d 87.5 0.37 8E-06 35.4 1.7 20 31-50 103-122 (334)
165 PF05148 Methyltransf_8: Hypot 86.8 0.9 1.9E-05 32.1 3.3 44 18-74 106-149 (219)
166 PRK15128 23S rRNA m(5)C1962 me 85.5 0.27 5.8E-06 37.0 0.1 43 1-43 249-301 (396)
167 TIGR02691 arsC_pI258_fam arsen 85.5 5.6 0.00012 25.1 6.3 70 3-75 39-128 (129)
168 PF09243 Rsm22: Mitochondrial 84.4 1.8 3.9E-05 30.8 4.0 62 1-73 64-131 (274)
169 COG2263 Predicted RNA methylas 83.8 1.1 2.3E-05 31.3 2.5 40 1-44 74-117 (198)
170 PF01861 DUF43: Protein of unk 81.9 3.1 6.8E-05 29.8 4.3 62 1-74 73-139 (243)
171 TIGR02085 meth_trns_rumB 23S r 81.9 0.64 1.4E-05 34.4 0.9 42 1-42 261-307 (374)
172 COG0421 SpeE Spermidine syntha 81.4 1.3 2.9E-05 32.0 2.4 66 1-75 106-182 (282)
173 PF01564 Spermine_synth: Sperm 81.0 0.96 2.1E-05 31.7 1.5 67 1-74 106-182 (246)
174 PF05724 TPMT: Thiopurine S-me 80.9 2.1 4.6E-05 29.6 3.1 64 1-74 65-146 (218)
175 KOG3191|consensus 80.7 3.8 8.3E-05 28.7 4.3 67 1-69 74-154 (209)
176 TIGR03439 methyl_EasF probable 80.5 3.1 6.6E-05 30.6 4.0 65 1-74 110-188 (319)
177 PLN02476 O-methyltransferase 80.5 0.43 9.4E-06 34.5 -0.4 42 1-42 149-201 (278)
178 PF01234 NNMT_PNMT_TEMT: NNMT/ 80.5 8.9 0.00019 27.5 6.2 42 6-49 126-172 (256)
179 PRK00050 16S rRNA m(4)C1402 me 79.9 0.71 1.5E-05 33.6 0.5 52 1-53 50-110 (296)
180 PRK11727 23S rRNA mA1618 methy 79.8 1.9 4.2E-05 31.7 2.8 45 1-45 144-199 (321)
181 PF02390 Methyltransf_4: Putat 79.3 1.1 2.4E-05 30.4 1.3 69 1-74 47-124 (195)
182 COG3963 Phospholipid N-methylt 76.8 5.3 0.00012 27.7 4.0 62 2-73 80-146 (194)
183 COG1352 CheR Methylase of chem 75.9 6.1 0.00013 28.4 4.3 47 19-75 187-233 (268)
184 PLN02668 indole-3-acetate carb 75.8 1.7 3.7E-05 32.9 1.5 20 31-50 158-177 (386)
185 PF09445 Methyltransf_15: RNA 75.1 0.61 1.3E-05 31.3 -0.9 43 1-43 27-77 (163)
186 KOG1271|consensus 72.3 8.6 0.00019 27.2 4.2 44 1-45 97-146 (227)
187 PLN02589 caffeoyl-CoA O-methyl 71.8 1 2.3E-05 31.8 -0.4 42 1-42 110-163 (247)
188 COG2242 CobL Precorrin-6B meth 71.8 6.8 0.00015 27.0 3.6 43 1-44 64-111 (187)
189 PRK13530 arsenate reductase; P 71.6 17 0.00037 23.0 5.3 14 3-16 44-57 (133)
190 PRK00536 speE spermidine synth 71.1 9.1 0.0002 27.4 4.3 54 1-74 100-162 (262)
191 COG4627 Uncharacterized protei 67.2 1.5 3.2E-05 30.1 -0.4 43 23-74 35-77 (185)
192 PF01596 Methyltransf_3: O-met 66.5 1.3 2.8E-05 30.4 -0.8 43 1-43 76-129 (205)
193 TIGR02689 ars_reduc_gluta arse 66.4 29 0.00062 21.6 5.7 68 3-76 41-125 (126)
194 PF06325 PrmA: Ribosomal prote 63.4 14 0.00031 26.8 4.1 41 1-44 190-234 (295)
195 TIGR00478 tly hemolysin TlyA f 61.3 20 0.00043 25.0 4.4 44 1-44 104-152 (228)
196 KOG2904|consensus 61.1 10 0.00023 28.2 3.0 48 1-50 178-235 (328)
197 PF06080 DUF938: Protein of un 59.3 12 0.00025 26.1 2.9 47 20-75 80-133 (204)
198 PF12147 Methyltransf_20: Puta 59.3 36 0.00077 25.4 5.5 66 2-75 168-241 (311)
199 PF09921 DUF2153: Uncharacteri 58.1 12 0.00026 24.4 2.6 31 46-76 51-81 (126)
200 PRK05031 tRNA (uracil-5-)-meth 57.9 2.6 5.7E-05 31.1 -0.6 27 1-27 234-265 (362)
201 KOG3178|consensus 57.3 31 0.00067 25.9 5.0 47 16-75 221-267 (342)
202 PF10672 Methyltrans_SAM: S-ad 57.1 1.6 3.4E-05 31.7 -1.8 43 1-43 152-203 (286)
203 cd02900 Macro_Appr_pase Macro 56.7 60 0.0013 22.1 6.1 59 1-66 4-68 (186)
204 PF04214 DUF411: Protein of un 54.1 9.9 0.00021 22.3 1.6 32 29-68 19-51 (70)
205 COG0394 Wzb Protein-tyrosine-p 53.9 49 0.0011 21.3 5.0 38 3-43 46-84 (139)
206 PLN02941 inositol-tetrakisphos 52.9 51 0.0011 24.4 5.5 63 4-69 38-109 (328)
207 COG1092 Predicted SAM-dependen 52.5 2.3 5E-05 32.2 -1.6 43 1-43 246-298 (393)
208 PF06962 rRNA_methylase: Putat 51.1 28 0.0006 22.9 3.5 69 1-75 5-81 (140)
209 COG0220 Predicted S-adenosylme 50.5 14 0.00029 25.9 2.1 64 7-74 88-155 (227)
210 PF08225 Antimicrobial19: Pseu 50.1 22 0.00048 16.3 2.1 15 60-74 3-17 (23)
211 COG2264 PrmA Ribosomal protein 47.0 58 0.0013 24.0 4.9 40 1-43 191-237 (300)
212 PRK11933 yebU rRNA (cytosine-C 45.3 30 0.00066 26.8 3.4 43 1-44 144-196 (470)
213 COG4262 Predicted spermidine s 44.6 24 0.00052 27.5 2.7 42 1-42 319-372 (508)
214 COG2502 AsnA Asparagine synthe 44.1 71 0.0015 23.7 5.0 51 24-75 95-146 (330)
215 PRK04338 N(2),N(2)-dimethylgua 40.4 12 0.00026 28.1 0.6 42 1-43 87-133 (382)
216 COG2265 TrmA SAM-dependent met 38.5 17 0.00036 27.9 1.1 40 1-41 321-368 (432)
217 PF02384 N6_Mtase: N-6 DNA Met 37.7 36 0.00078 23.9 2.7 43 1-43 83-133 (311)
218 PRK13886 conjugal transfer pro 35.5 24 0.00052 25.0 1.5 37 31-76 202-238 (241)
219 PF05770 Ins134_P3_kin: Inosit 33.0 10 0.00022 27.9 -0.8 34 7-43 27-60 (307)
220 KOG1709|consensus 32.6 56 0.0012 23.7 2.9 60 2-74 131-197 (271)
221 PF04672 Methyltransf_19: S-ad 32.5 10 0.00023 27.4 -0.8 51 1-51 101-166 (267)
222 PRK10222 PTS system L-ascorbat 32.5 67 0.0015 18.9 2.9 33 10-43 10-42 (85)
223 PRK11797 D-ribose pyranase; Pr 30.9 1.4E+02 0.003 19.4 4.4 38 3-42 7-46 (139)
224 KOG0820|consensus 29.6 64 0.0014 24.1 2.8 40 2-44 87-132 (315)
225 PF05555 DUF762: Coxiella burn 29.6 56 0.0012 23.3 2.5 19 58-76 210-228 (248)
226 TIGR02143 trmA_only tRNA (urac 29.0 31 0.00068 25.3 1.2 27 1-27 225-256 (353)
227 PRK13699 putative methylase; P 28.0 59 0.0013 22.4 2.4 56 19-75 3-64 (227)
228 PF06226 DUF1007: Protein of u 27.9 53 0.0011 22.5 2.1 42 35-77 46-87 (212)
229 PF04716 ETC_C1_NDUFA5: ETC co 26.9 1.1E+02 0.0024 16.9 3.0 21 56-76 1-21 (57)
230 PF04816 DUF633: Family of unk 26.8 35 0.00075 23.4 1.1 41 1-43 27-74 (205)
231 cd04927 ACT_ACR-like_2 Second 26.6 97 0.0021 17.5 2.8 28 47-75 46-73 (76)
232 PF08527 PAD_M: Protein-argini 26.4 23 0.00051 23.9 0.1 18 27-44 138-155 (159)
233 PF11899 DUF3419: Protein of u 26.4 78 0.0017 23.9 2.9 54 12-74 271-325 (380)
234 COG3442 Predicted glutamine am 26.0 93 0.002 22.5 3.1 33 10-44 29-61 (250)
235 PF11599 AviRa: RRNA methyltra 24.8 44 0.00094 24.1 1.3 36 36-73 169-204 (246)
236 TIGR00308 TRM1 tRNA(guanine-26 24.7 21 0.00045 26.8 -0.4 43 1-43 75-122 (374)
237 PF02475 Met_10: Met-10+ like- 24.3 60 0.0013 22.2 1.9 41 1-43 131-177 (200)
238 COG2519 GCD14 tRNA(1-methylade 23.9 1.4E+02 0.0031 21.6 3.7 39 2-42 126-170 (256)
239 PF07084 Spot_14: Thyroid horm 23.6 1E+02 0.0022 20.6 2.8 21 56-76 118-138 (160)
240 PTZ00213 asparagine synthetase 23.5 2.7E+02 0.0058 21.2 5.2 56 18-75 92-148 (348)
241 PF06388 DUF1075: Protein of u 23.3 57 0.0012 21.7 1.5 14 2-15 78-91 (146)
242 PF12108 SF3a60_bindingd: Spli 23.1 64 0.0014 15.6 1.3 12 65-76 8-19 (28)
243 PF08704 GCD14: tRNA methyltra 22.7 98 0.0021 21.9 2.7 42 2-43 72-121 (247)
244 TIGR00669 asnA aspartate--ammo 22.7 2.9E+02 0.0063 20.8 5.2 56 18-75 89-146 (330)
245 COG4755 Uncharacterized protei 22.5 94 0.002 20.6 2.4 28 46-73 69-96 (151)
246 KOG2730|consensus 21.7 66 0.0014 23.4 1.7 42 1-42 122-172 (263)
247 cd05565 PTS_IIB_lactose PTS_II 21.6 68 0.0015 19.6 1.6 43 5-48 18-60 (99)
248 cd00645 AsnA Asparagine synthe 21.3 3.2E+02 0.0068 20.5 5.2 55 19-75 82-137 (309)
249 TIGR02987 met_A_Alw26 type II 21.2 1.4E+02 0.003 23.0 3.4 43 1-43 69-120 (524)
250 KOG3243|consensus 20.9 48 0.001 22.1 0.8 14 32-45 73-86 (158)
251 PF07942 N2227: N2227-like pro 20.8 1.4E+02 0.0031 21.5 3.3 45 18-74 146-193 (270)
252 PF11387 DUF2795: Protein of u 20.3 25 0.00053 18.4 -0.6 30 5-38 11-40 (44)
253 TIGR00095 RNA methyltransferas 20.2 29 0.00063 23.2 -0.4 43 1-43 78-129 (189)
254 cd00315 Cyt_C5_DNA_methylase C 20.2 3.2E+02 0.0069 19.2 5.0 49 1-50 28-77 (275)
255 PRK11524 putative methyltransf 20.2 31 0.00066 24.4 -0.3 26 18-43 9-35 (284)
No 1
>KOG1541|consensus
Probab=99.90 E-value=4.5e-24 Score=149.97 Aligned_cols=75 Identities=55% Similarity=1.026 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|||+.||++|.++..+++++.+||++++||++|+||++||++++||++|.+++.|+|.+||.+||..||.+|..
T Consensus 78 vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r 152 (270)
T KOG1541|consen 78 VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR 152 (270)
T ss_pred ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc
Confidence 699999999999887778999999999999999999999999999999999999999999999999999999863
No 2
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=1e-12 Score=86.36 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHhcCC--------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV--------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC 72 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~--------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~ 72 (77)
+|+|++||++|++|.. +.+++++|+ +.+|+.+++||+|+++++++|+.|+ .++|++++++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~v~~~~~l~~~~d~-----------~~~l~ei~rv 70 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA-IDLPFDDCEFDAVTMGYGLRNVVDR-----------LRAMKEMYRV 70 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEech-hhCCCCCCCeeEEEecchhhcCCCH-----------HHHHHHHHHH
Confidence 6999999999976632 358999997 6899999999999999999998653 4677888887
Q ss_pred Hhh
Q psy4109 73 LWS 75 (77)
Q Consensus 73 L~~ 75 (77)
|+.
T Consensus 71 Lkp 73 (160)
T PLN02232 71 LKP 73 (160)
T ss_pred cCc
Confidence 763
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=1.3e-12 Score=92.08 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHhcCCC-----CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVE-----GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~-----~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++||+.|++|... .++++||+ +.|||+|++||++.+++.|+++.|. .+.++++|++|+
T Consensus 81 ~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA-e~LPf~D~sFD~vt~~fglrnv~d~-----------~~aL~E~~RVlK 147 (238)
T COG2226 81 LDISESMLEVAREKLKKKGVQNVEFVVGDA-ENLPFPDNSFDAVTISFGLRNVTDI-----------DKALKEMYRVLK 147 (238)
T ss_pred EECCHHHHHHHHHHhhccCccceEEEEech-hhCCCCCCccCEEEeeehhhcCCCH-----------HHHHHHHHHhhc
Confidence 59999999999999743 57999996 7899999999999999999999553 345555666664
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.28 E-value=8.2e-12 Score=72.82 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHhcCCC--CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDREVE--GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~--~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|++|++.|+++... ..+.++|+ +.+||++++||.|+++.+++|+++ ..+++++++++|+.
T Consensus 25 ~D~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~sfD~v~~~~~~~~~~~-----------~~~~l~e~~rvLk~ 89 (95)
T PF08241_consen 25 IDISEEMLEQARKRLKNEGVSFRQGDA-EDLPFPDNSFDVVFSNSVLHHLED-----------PEAALREIYRVLKP 89 (95)
T ss_dssp EES-HHHHHHHHHHTTTSTEEEEESBT-TSSSS-TT-EEEEEEESHGGGSSH-----------HHHHHHHHHHHEEE
T ss_pred EeCCHHHHHHHHhcccccCchheeehH-HhCccccccccccccccceeeccC-----------HHHHHHHHHHHcCc
Confidence 59999999999998743 35999997 689999999999999999999933 46788888888763
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.18 E-value=1.8e-11 Score=85.31 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++||+.|++|.. +.+++++|+ +.+||++++||+|++.+.++.++|+ .+.+++++++|+
T Consensus 78 vD~s~~ML~~a~~k~~~~~~~~i~~v~~da-~~lp~~d~sfD~v~~~fglrn~~d~-----------~~~l~E~~RVLk 144 (233)
T PF01209_consen 78 VDISPGMLEVARKKLKREGLQNIEFVQGDA-EDLPFPDNSFDAVTCSFGLRNFPDR-----------ERALREMYRVLK 144 (233)
T ss_dssp EES-HHHHHHHHHHHHHTT--SEEEEE-BT-TB--S-TT-EEEEEEES-GGG-SSH-----------HHHHHHHHHHEE
T ss_pred ecCCHHHHHHHHHHHHhhCCCCeeEEEcCH-HHhcCCCCceeEEEHHhhHHhhCCH-----------HHHHHHHHHHcC
Confidence 5999999999998842 468999996 7899999999999999999888553 346777777775
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.13 E-value=7.4e-11 Score=82.89 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHhcCC--------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV--------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC 72 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~--------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~ 72 (77)
+|+|++|++.|++|.. +.+++++|+ +.+||.+++||+|+++.++||+.|+ .++++++++.
T Consensus 104 vD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sfD~V~~~~~l~~~~d~-----------~~~l~ei~rv 171 (261)
T PLN02233 104 LDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYFDAITMGYGLRNVVDR-----------LKAMQEMYRV 171 (261)
T ss_pred EECCHHHHHHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCEeEEEEecccccCCCH-----------HHHHHHHHHH
Confidence 5999999999987632 357899997 6899999999999999999998653 4577777777
Q ss_pred Hh
Q psy4109 73 LW 74 (77)
Q Consensus 73 L~ 74 (77)
|+
T Consensus 172 Lk 173 (261)
T PLN02233 172 LK 173 (261)
T ss_pred cC
Confidence 75
No 7
>PRK05785 hypothetical protein; Provisional
Probab=99.12 E-value=1.4e-10 Score=80.18 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++||+.|+++. ..+++|+ +.+||.+++||+|+++++++|+.|+ .+.+++++++|+
T Consensus 80 vD~S~~Ml~~a~~~~---~~~~~d~-~~lp~~d~sfD~v~~~~~l~~~~d~-----------~~~l~e~~RvLk 138 (226)
T PRK05785 80 LDYAENMLKMNLVAD---DKVVGSF-EALPFRDKSFDVVMSSFALHASDNI-----------EKVIAEFTRVSR 138 (226)
T ss_pred ECCCHHHHHHHHhcc---ceEEech-hhCCCCCCCEEEEEecChhhccCCH-----------HHHHHHHHHHhc
Confidence 699999999999874 4688997 6899999999999999999998654 335555555554
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.09 E-value=2e-10 Score=79.13 Aligned_cols=62 Identities=21% Similarity=0.348 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.....++++|+ +.+|+.+++||+|+|+.++||+.|+ ...++++++.|+
T Consensus 70 ~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~~~~d~-----------~~~l~~~~~~Lk 131 (251)
T PRK10258 70 LDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQWCGNL-----------STALRELYRVVR 131 (251)
T ss_pred EECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhhhcCCH-----------HHHHHHHHHHcC
Confidence 5999999999999876667899997 6799999999999999999998654 345666666665
No 9
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.01 E-value=3.1e-10 Score=68.66 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeec-cchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISI-SALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~-~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++||+.|+++. ...+++++|+ ..+|+.+++||.|+++ .+++|+ .++.+.++|+++++.|+
T Consensus 30 vD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~~~---------~~~~~~~ll~~~~~~l~ 98 (101)
T PF13649_consen 30 VDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLHHL---------SPEELEALLRRIARLLR 98 (101)
T ss_dssp EES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGGGS---------SHHHHHHHHHHHHHTEE
T ss_pred EECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccCCC---------CHHHHHHHHHHHHHHhC
Confidence 599999999999886 4679999998 5799999999999995 558775 35678889999888765
No 10
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.96 E-value=1.7e-09 Score=73.81 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.+..++.++|+. . |+.+++||+|+++.+++|+ ++..+.+++++++++++
T Consensus 73 iDiS~~~l~~A~~~~~~~~~~~~d~~-~-~~~~~sfD~V~~~~vL~hl---------~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 73 VEINEYAVEKAKAYLPNINIIQGSLF-D-PFKDNFFDLVLTKGVLIHI---------NPDNLPTAYRELYRCSN 135 (204)
T ss_pred EECCHHHHHHHHhhCCCCcEEEeecc-C-CCCCCCEEEEEECChhhhC---------CHHHHHHHHHHHHhhcC
Confidence 69999999999998777789999974 4 8999999999999999765 34678889999998875
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.85 E-value=3.6e-09 Score=73.40 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|++++ .+++++|+ +.++ .+++||+|+|+.++||+.|+ .++++++++.|+
T Consensus 59 vD~s~~~~~~a~~~~--~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~d~-----------~~~l~~~~~~Lk 117 (255)
T PRK14103 59 LDSSPEMVAAARERG--VDARTGDV-RDWK-PKPDTDVVVSNAALQWVPEH-----------ADLLVRWVDELA 117 (255)
T ss_pred EECCHHHHHHHHhcC--CcEEEcCh-hhCC-CCCCceEEEEehhhhhCCCH-----------HHHHHHHHHhCC
Confidence 699999999998875 67899997 5565 56899999999999999653 346777777765
No 12
>PRK06202 hypothetical protein; Provisional
Probab=98.74 E-value=2.6e-08 Score=68.12 Aligned_cols=64 Identities=14% Similarity=0.051 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.. +.++.++|. +.+|+.+++||+|+|+.++||+.++ .+.++++++++.++
T Consensus 94 vD~s~~~l~~a~~~~~~~~~~~~~~~~-~~l~~~~~~fD~V~~~~~lhh~~d~---------~~~~~l~~~~r~~~ 159 (232)
T PRK06202 94 IDPDPRAVAFARANPRRPGVTFRQAVS-DELVAEGERFDVVTSNHFLHHLDDA---------EVVRLLADSAALAR 159 (232)
T ss_pred EcCCHHHHHHHHhccccCCCeEEEEec-ccccccCCCccEEEECCeeecCChH---------HHHHHHHHHHHhcC
Confidence 6999999999998852 356777775 5688888999999999999998542 35677888877664
No 13
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.74 E-value=1.8e-08 Score=69.56 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++..+.+++.+|+ ..++ .+++||.|+|+.++||+.|. .+++++++++|+
T Consensus 61 vD~s~~~i~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~d~-----------~~~l~~~~~~Lk 121 (258)
T PRK01683 61 IDSSPAMLAEARSRLPDCQFVEADI-ASWQ-PPQALDLIFANASLQWLPDH-----------LELFPRLVSLLA 121 (258)
T ss_pred EECCHHHHHHHHHhCCCCeEEECch-hccC-CCCCccEEEEccChhhCCCH-----------HHHHHHHHHhcC
Confidence 5999999999999987788999997 4454 45699999999999999653 457788887776
No 14
>KOG1540|consensus
Probab=98.69 E-value=2.4e-08 Score=71.87 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHhcC---CC-----CcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109 1 MKKNAFYTNVARDRE---VE-----GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA 51 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~~-----~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~ 51 (77)
+||||+||+.+++|. +. ..++.+|+ +.|||.+++||+....+.|..+.+.
T Consensus 136 ~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA-E~LpFdd~s~D~yTiafGIRN~th~ 193 (296)
T KOG1540|consen 136 LDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA-EDLPFDDDSFDAYTIAFGIRNVTHI 193 (296)
T ss_pred EeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc-ccCCCCCCcceeEEEecceecCCCH
Confidence 599999999998886 21 46889996 8999999999999999999888554
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=98.67 E-value=3.4e-08 Score=71.73 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|++.|+++. ...+++++|+ ..+||.+++||+|+|+.+++|+.|. .++|++++++|+
T Consensus 147 vD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~~~~~~FD~V~s~~~~~h~~d~-----------~~~l~e~~rvLk 214 (340)
T PLN02244 147 ITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQPFEDGQFDLVWSMESGEHMPDK-----------RKFVQELARVAA 214 (340)
T ss_pred EECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccCCCCCCCccEEEECCchhccCCH-----------HHHHHHHHHHcC
Confidence 599999999988652 2368899997 6799999999999999999988653 467888888876
No 16
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.66 E-value=3e-08 Score=70.17 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA 51 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~ 51 (77)
+|-|++||+.|+++.+..++.++|+.+ .- .+..+|.++||.+|||++|-
T Consensus 60 iDsS~~Mla~Aa~rlp~~~f~~aDl~~-w~-p~~~~dllfaNAvlqWlpdH 108 (257)
T COG4106 60 IDSSPAMLAKAAQRLPDATFEEADLRT-WK-PEQPTDLLFANAVLQWLPDH 108 (257)
T ss_pred ccCCHHHHHHHHHhCCCCceecccHhh-cC-CCCccchhhhhhhhhhcccc
Confidence 689999999999999999999999853 32 46789999999999999763
No 17
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.62 E-value=6.6e-08 Score=67.44 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++. .+.+++++|+ +.+|+.+++||.|+++.+++|+.+. .+.|+++++.|+
T Consensus 108 vD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v~~~~~d~-----------~~~l~~~~r~Lk 174 (272)
T PRK11873 108 VDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCVINLSPDK-----------ERVFKEAFRVLK 174 (272)
T ss_pred ECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCcccCCCCH-----------HHHHHHHHHHcC
Confidence 699999999999863 2457888997 6799999999999999999987543 356777777775
No 18
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.60 E-value=3.7e-08 Score=69.57 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHhcC--------------------------------CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109 1 MKKNAFYTNVARDRE--------------------------------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL 48 (77)
Q Consensus 1 iDiS~~ML~~A~~r~--------------------------------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~ 48 (77)
+|+|++||+.|++.. ...++.++|+. ..|+.++.||+|+|..+++|+
T Consensus 138 ~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~-~~~~~~~~fD~I~crnvl~yf 216 (264)
T smart00138 138 TDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL-AESPPLGDFDLIFCRNVLIYF 216 (264)
T ss_pred EECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC-CCCCccCCCCEEEechhHHhC
Confidence 599999999998752 02478889985 577778999999999999988
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 49 CNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 49 ~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
.+ ...++.+++++++|+.
T Consensus 217 ~~---------~~~~~~l~~l~~~L~p 234 (264)
T smart00138 217 DE---------PTQRKLLNRFAEALKP 234 (264)
T ss_pred CH---------HHHHHHHHHHHHHhCC
Confidence 43 3456788888888863
No 19
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.58 E-value=9.2e-08 Score=63.96 Aligned_cols=48 Identities=23% Similarity=0.238 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCC-CCCCCceeeeeeccchhhhcc
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGV-PFRAGAFDGAISISALQWLCN 50 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~l-Pf~~~sFD~v~s~~~l~w~~d 50 (77)
+|+|++|++.|++++ .+++++|+.+.+ |+.+++||.|+++.++||+.|
T Consensus 42 iD~s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 42 IEIDQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred EeCCHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 599999999998775 568889975445 478899999999999999854
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.58 E-value=4e-08 Score=71.60 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++. .+.+++++|+ +.+|+.+++||+|+++.+++|+.|+ ..+++.+++.|+
T Consensus 159 ID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~vLeHv~d~-----------~~~L~~l~r~Lk 226 (322)
T PLN02396 159 VDAVDKNVKIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLEVIEHVANP-----------AEFCKSLSALTI 226 (322)
T ss_pred EeCCHHHHHHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhhHHHhcCCH-----------HHHHHHHHHHcC
Confidence 699999999998763 1357899997 6799989999999999999999764 246666766664
No 21
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.57 E-value=1.2e-07 Score=63.51 Aligned_cols=62 Identities=23% Similarity=0.267 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHhcCC-CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV-EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.++++.. +..++.+|+ +.+|+.+++||+|+++.++||+.++ .+++.++++.|+
T Consensus 64 ~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~~~~-----------~~~l~~~~~~L~ 126 (240)
T TIGR02072 64 LDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWCDDL-----------SQALSELARVLK 126 (240)
T ss_pred EeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhccCH-----------HHHHHHHHHHcC
Confidence 5999999999988763 457899998 5789999999999999999998553 345666666554
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.57 E-value=1.1e-07 Score=71.12 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.. ..++.++|+ ..+|+++++||+|+|..+++|+.|+ .++|++++++|+
T Consensus 295 vDiS~~~l~~A~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~I~s~~~l~h~~d~-----------~~~l~~~~r~Lk 360 (475)
T PLN02336 295 IDLSVNMISFALERAIGRKCSVEFEVADC-TKKTYPDNSFDVIYSRDTILHIQDK-----------PALFRSFFKWLK 360 (475)
T ss_pred EECCHHHHHHHHHHhhcCCCceEEEEcCc-ccCCCCCCCEEEEEECCcccccCCH-----------HHHHHHHHHHcC
Confidence 5999999999987642 357889997 5688889999999999999999653 357777777775
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.56 E-value=9.8e-08 Score=70.17 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHhcC--CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE--VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++. .+.+++.+|+ +.+|+.+++||.|+++.+++++.++ .+.|+++++.|+
T Consensus 143 VD~S~~mL~~A~~k~~~~~i~~i~gD~-e~lp~~~~sFDvVIs~~~L~~~~d~-----------~~~L~e~~rvLk 206 (340)
T PLN02490 143 LDQSPHQLAKAKQKEPLKECKIIEGDA-EDLPFPTDYADRYVSAGSIEYWPDP-----------QRGIKEAYRVLK 206 (340)
T ss_pred EECCHHHHHHHHHhhhccCCeEEeccH-HhCCCCCCceeEEEEcChhhhCCCH-----------HHHHHHHHHhcC
Confidence 599999999999875 2468899997 6799999999999999999998654 235677777665
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.55 E-value=1.4e-07 Score=60.65 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|+|++|++.|+++. .+.+++++|+.+ +| +. +.||.|++..+++|+.++ ..+++++++.|
T Consensus 34 vD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~-~~~D~I~~~~~l~~~~~~-----------~~~l~~~~~~l 100 (152)
T PF13847_consen 34 VDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELE-EKFDIIISNGVLHHFPDP-----------EKVLKNIIRLL 100 (152)
T ss_dssp EESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSS-TTEEEEEEESTGGGTSHH-----------HHHHHHHHHHE
T ss_pred EECcHHHHHHhhcccccccccccceEEeehhc-cccccC-CCeeEEEEcCchhhccCH-----------HHHHHHHHHHc
Confidence 599999999999852 246899999854 88 66 899999999999998654 35666766665
Q ss_pred h
Q psy4109 74 W 74 (77)
Q Consensus 74 ~ 74 (77)
+
T Consensus 101 k 101 (152)
T PF13847_consen 101 K 101 (152)
T ss_dssp E
T ss_pred C
Confidence 4
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.54 E-value=6.1e-08 Score=67.34 Aligned_cols=62 Identities=11% Similarity=0.182 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCC-CCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGV-PFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~l-Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|+|++|++.|+++.. +.+++++|+. .+ ++.+++||+|++..+++|+.++ ..+++++++.|
T Consensus 72 vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~-~l~~~~~~~fD~V~~~~vl~~~~~~-----------~~~l~~~~~~L 139 (255)
T PRK11036 72 CDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ-DIAQHLETPVDLILFHAVLEWVADP-----------KSVLQTLWSVL 139 (255)
T ss_pred EECCHHHHHHHHHHHHhcCCccceEEEEcCHH-HHhhhcCCCCCEEEehhHHHhhCCH-----------HHHHHHHHHHc
Confidence 6999999999987742 3478899974 45 4678999999999999999654 24666777766
Q ss_pred h
Q psy4109 74 W 74 (77)
Q Consensus 74 ~ 74 (77)
+
T Consensus 140 k 140 (255)
T PRK11036 140 R 140 (255)
T ss_pred C
Confidence 5
No 26
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.51 E-value=2.5e-07 Score=65.09 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.. ...+.++|+ ...|+.+++||+|++..+++|+. .+...++|+++++.|+
T Consensus 81 iD~s~~~~~~a~~~~~~~~~i~~~~~D~-~~~~~~~~~FD~V~s~~~l~h~~---------~~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 81 VDICEKMVNIAKLRNSDKNKIEFEANDI-LKKDFPENTFDMIYSRDAILHLS---------YADKKKLFEKCYKWLK 147 (263)
T ss_pred EECCHHHHHHHHHHcCcCCceEEEECCc-ccCCCCCCCeEEEEEhhhHHhCC---------HHHHHHHHHHHHHHcC
Confidence 5999999999998753 357888997 56899999999999998876652 3345678888888876
No 27
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.50 E-value=1.7e-07 Score=63.55 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++. ...+++++|+ ..+|+.+++||.|+++.+++|+.+. ..+++++++.|+
T Consensus 76 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~~~~-----------~~~l~~~~~~Lk 142 (231)
T TIGR02752 76 LDFSENMLSVGRQKVKDAGLHNVELVHGNA-MELPFDDNSFDYVTIGFGLRNVPDY-----------MQVLREMYRVVK 142 (231)
T ss_pred EECCHHHHHHHHHHHHhcCCCceEEEEech-hcCCCCCCCccEEEEecccccCCCH-----------HHHHHHHHHHcC
Confidence 599999999998764 2357899997 5688989999999999999998543 245556666554
No 28
>PRK06922 hypothetical protein; Provisional
Probab=98.50 E-value=2.4e-07 Score=73.21 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhccc--CCCCCChHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNA--DKTSHNPAKRLYKFFSSLFAC 72 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~--~~~~~~p~~~l~~~~~~l~~~ 72 (77)
+|+|++|++.|+++. ...+++++|+ ..+| |.+++||.|+++.++||+.+. ....+-..+.+.++|++++++
T Consensus 448 IDIS~~MLe~Ararl~~~g~~ie~I~gDa-~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV 526 (677)
T PRK06922 448 IDISENVIDTLKKKKQNEGRSWNVIKGDA-INLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV 526 (677)
T ss_pred EECCHHHHHHHHHHhhhcCCCeEEEEcch-HhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH
Confidence 599999999998764 2346788997 4688 889999999999999987541 112223457888999999999
Q ss_pred Hhh
Q psy4109 73 LWS 75 (77)
Q Consensus 73 L~~ 75 (77)
|+.
T Consensus 527 LKP 529 (677)
T PRK06922 527 LKP 529 (677)
T ss_pred cCC
Confidence 874
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.49 E-value=4.8e-08 Score=67.85 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.. ..+++++|+ ..+|+. .||+|++++++||+.+ ...+.++++++++|+
T Consensus 88 vD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~-~~~~~~--~~D~vv~~~~l~~l~~---------~~~~~~l~~i~~~Lk 155 (247)
T PRK15451 88 IDNSPAMIERCRRHIDAYKAPTPVDVIEGDI-RDIAIE--NASMVVLNFTLQFLEP---------SERQALLDKIYQGLN 155 (247)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh-hhCCCC--CCCEEehhhHHHhCCH---------HHHHHHHHHHHHhcC
Confidence 6999999999998742 358899997 567764 4999999999998842 235678899999886
Q ss_pred h
Q psy4109 75 S 75 (77)
Q Consensus 75 ~ 75 (77)
.
T Consensus 156 p 156 (247)
T PRK15451 156 P 156 (247)
T ss_pred C
Confidence 3
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.45 E-value=4.1e-07 Score=61.39 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|++|++.|+++. .+.++.++|+ ..+++ +++||+|+|+.++||+. +..+..+++++++.|+.
T Consensus 58 vD~S~~~i~~a~~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~I~~~~~~~~~~---------~~~~~~~l~~i~~~Lkp 126 (197)
T PRK11207 58 WDKNPMSIANLERIKAAENLDNLHTAVVDL-NNLTF-DGEYDFILSTVVLMFLE---------AKTIPGLIANMQRCTKP 126 (197)
T ss_pred EeCCHHHHHHHHHHHHHcCCCcceEEecCh-hhCCc-CCCcCEEEEecchhhCC---------HHHHHHHHHHHHHHcCC
Confidence 599999999988653 2356788897 45676 46799999999998872 34567899999988863
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.43 E-value=1.2e-07 Score=65.09 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.. +.+++++|+ ..+|+. .+|+|++++++||+.+ +....++++++++|+
T Consensus 85 vD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~--~~d~v~~~~~l~~~~~---------~~~~~~l~~i~~~Lk 152 (239)
T TIGR00740 85 IDNSQPMVERCRQHIAAYHSEIPVEILCNDI-RHVEIK--NASMVILNFTLQFLPP---------EDRIALLTKIYEGLN 152 (239)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEECCh-hhCCCC--CCCEEeeecchhhCCH---------HHHHHHHHHHHHhcC
Confidence 5999999999987731 347899998 568765 4899999999999843 234568888888875
No 32
>PRK08317 hypothetical protein; Provisional
Probab=98.41 E-value=6.7e-07 Score=59.60 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|++.|+++. ...+++.+|+ +.+|+.+++||.|++..+++|+.++ ..+++++++.|+
T Consensus 50 ~d~~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~~~-----------~~~l~~~~~~L~ 115 (241)
T PRK08317 50 IDRSEAMLALAKERAAGLGPNVEFVRGDA-DGLPFPDGSFDAVRSDRVLQHLEDP-----------ARALAEIARVLR 115 (241)
T ss_pred EeCCHHHHHHHHHHhhCCCCceEEEeccc-ccCCCCCCCceEEEEechhhccCCH-----------HHHHHHHHHHhc
Confidence 589999999998872 3457888997 5788999999999999999998553 335666666654
No 33
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.39 E-value=5.4e-07 Score=63.29 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISA 44 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~ 44 (77)
+|+|++|++.|+++.++..+.++|+ ..+||.+++||.|+++.+
T Consensus 118 iD~s~~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 118 LDISKVAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIRIYA 160 (272)
T ss_pred ECCCHHHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEEecC
Confidence 5999999999999887888999997 579999999999999864
No 34
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.39 E-value=1.3e-08 Score=60.89 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHhcCCC-----CcEEEccCCCCCCC-CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVE-----GDLVLSDLGQGVPF-RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~-----~~~~~~D~~~~lPf-~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|++.|++|... ...+..+..+.... ..++||.|+++.++||+++ ++.+++++++.|+
T Consensus 26 ~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~-----------~~~~l~~~~~~L~ 94 (99)
T PF08242_consen 26 VDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLED-----------IEAVLRNIYRLLK 94 (99)
T ss_dssp EESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S------------HHHHHHHHTTT-T
T ss_pred EECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhhh-----------HHHHHHHHHHHcC
Confidence 59999999888877521 12343333221111 2369999999999999933 3567777777665
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.37 E-value=5.1e-07 Score=54.53 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|+|++|++.|+++. .+.+++++|+ ...+-..+.||+|++.. +++++.. .+..+++++++++.|
T Consensus 31 vD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~~~--------~~~~~~~l~~~~~~L 101 (112)
T PF12847_consen 31 VDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSGFTLHFLLP--------LDERRRVLERIRRLL 101 (112)
T ss_dssp EESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECSGSGGGCCH--------HHHHHHHHHHHHHHE
T ss_pred EeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECCCccccccc--------hhHHHHHHHHHHHhc
Confidence 599999999999886 3458899997 32333455699999999 5554421 266778888888877
Q ss_pred h
Q psy4109 74 W 74 (77)
Q Consensus 74 ~ 74 (77)
+
T Consensus 102 ~ 102 (112)
T PF12847_consen 102 K 102 (112)
T ss_dssp E
T ss_pred C
Confidence 5
No 36
>KOG3010|consensus
Probab=98.25 E-value=1.2e-06 Score=62.52 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHhcCCCC----cEEEccCCCCCCCC--CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEG----DLVLSDLGQGVPFR--AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~----~~~~~D~~~~lPf~--~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++||+.|++..+.. ...-.+ .+..|+. ++|.|.|++..++||++ |.+|++.+++.|+
T Consensus 61 tD~s~~mL~~a~k~~~~~y~~t~~~ms~-~~~v~L~g~e~SVDlI~~Aqa~HWFd------------le~fy~~~~rvLR 127 (261)
T KOG3010|consen 61 TDVSEAMLKVAKKHPPVTYCHTPSTMSS-DEMVDLLGGEESVDLITAAQAVHWFD------------LERFYKEAYRVLR 127 (261)
T ss_pred ecCCHHHHHHhhcCCCcccccCCccccc-cccccccCCCcceeeehhhhhHHhhc------------hHHHHHHHHHHcC
Confidence 599999999998776422 111112 1345665 99999999999999994 4689999999998
Q ss_pred h
Q psy4109 75 S 75 (77)
Q Consensus 75 ~ 75 (77)
+
T Consensus 128 k 128 (261)
T KOG3010|consen 128 K 128 (261)
T ss_pred C
Confidence 6
No 37
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.25 E-value=1.4e-06 Score=63.16 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHh--cC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARD--RE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~--r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|+.+++. +. .+..++.+|+ +.+|+ +++||.|+|+++++|+.++ ..+|++++++|+
T Consensus 151 iD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~-e~lp~-~~~FD~V~s~~vl~H~~dp-----------~~~L~~l~~~Lk 217 (322)
T PRK15068 151 IDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI-EQLPA-LKAFDTVFSMGVLYHRRSP-----------LDHLKQLKDQLV 217 (322)
T ss_pred EcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH-HHCCC-cCCcCEEEECChhhccCCH-----------HHHHHHHHHhcC
Confidence 6999999986542 21 2467899997 67998 8999999999999987543 357788888775
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.20 E-value=3e-06 Score=63.35 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHhcC---CCCcEEEccCCC-CCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDRE---VEGDLVLSDLGQ-GVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~-~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|++|++.++++. .+..++++|+.. .+|+.+++||.|+++.+++|+.+ +.+.++++++++.|+.
T Consensus 65 iD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~---------~~~~~~l~~~~r~Lk~ 134 (475)
T PLN02336 65 LDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSD---------KEVENLAERMVKWLKV 134 (475)
T ss_pred EeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCH---------HHHHHHHHHHHHhcCC
Confidence 599999999987543 246789999742 57888999999999999998843 3456788888888763
No 39
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.19 E-value=4e-06 Score=56.46 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|++|++.|+++. ....+.++|+ ...|+ +++||.|+++.+++|+ +...+..+++++++.|+.
T Consensus 58 iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~~-~~~fD~I~~~~~~~~~---------~~~~~~~~l~~~~~~Lkp 125 (195)
T TIGR00477 58 WDHNPASIASVLDMKARENLPLRTDAYDI-NAAAL-NEDYDFIFSTVVFMFL---------QAGRVPEIIANMQAHTRP 125 (195)
T ss_pred EECCHHHHHHHHHHHHHhCCCceeEeccc-hhccc-cCCCCEEEEecccccC---------CHHHHHHHHHHHHHHhCC
Confidence 599999999987553 2356777786 45665 4679999999999876 234667889999988864
No 40
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.17 E-value=2.1e-06 Score=59.13 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFS 67 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~ 67 (77)
++++++.+..|-+|+ ..++++|+.+.|+ |+|++||.||.+.++|.+ +.|.+.|++++.
T Consensus 42 vEid~~~v~~cv~rG--v~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~-------~~P~~vL~EmlR 100 (193)
T PF07021_consen 42 VEIDPDNVAACVARG--VSVIQGDLDEGLADFPDQSFDYVILSQTLQAV-------RRPDEVLEEMLR 100 (193)
T ss_pred EecCHHHHHHHHHcC--CCEEECCHHHhHhhCCCCCccEEehHhHHHhH-------hHHHHHHHHHHH
Confidence 578999999999998 5589999988897 999999999999999998 556777777753
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.07 E-value=7.5e-06 Score=58.04 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|++|++.|+++. ...++..+|+ ...++ +++||.|+|+.+++++. ++.+..+++++++.|+.
T Consensus 148 vD~s~~ai~~~~~~~~~~~l~v~~~~~D~-~~~~~-~~~fD~I~~~~vl~~l~---------~~~~~~~l~~~~~~Lkp 215 (287)
T PRK12335 148 VDINQQSLENLQEIAEKENLNIRTGLYDI-NSASI-QEEYDFILSTVVLMFLN---------RERIPAIIKNMQEHTNP 215 (287)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEEEech-hcccc-cCCccEEEEcchhhhCC---------HHHHHHHHHHHHHhcCC
Confidence 699999999987653 3456788887 44555 78899999999998772 35677888998888864
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.07 E-value=5.5e-06 Score=60.32 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHh--cC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARD--RE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~--r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|+.+++. +. ....+..+|+ +.+|+. ++||+|+|+++++|+.++ ..+|++++++|+
T Consensus 150 iDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i-e~lp~~-~~FD~V~s~gvL~H~~dp-----------~~~L~el~r~Lk 216 (314)
T TIGR00452 150 IDPTVLFLCQFEAVRKLLDNDKRAILEPLGI-EQLHEL-YAFDTVFSMGVLYHRKSP-----------LEHLKQLKHQLV 216 (314)
T ss_pred EcCCHHHHHHHHHHHHHhccCCCeEEEECCH-HHCCCC-CCcCEEEEcchhhccCCH-----------HHHHHHHHHhcC
Confidence 6999999987532 21 2346777887 568864 489999999999998554 347788888776
Q ss_pred h
Q psy4109 75 S 75 (77)
Q Consensus 75 ~ 75 (77)
.
T Consensus 217 p 217 (314)
T TIGR00452 217 I 217 (314)
T ss_pred C
Confidence 3
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.07 E-value=5.8e-06 Score=55.81 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.. ..+++.+|+. ..|+ +++||.|+++.+++|+.++ ..+|+++++.|+
T Consensus 29 id~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~-~~~~-~~~fD~I~~~~~l~~~~~~-----------~~~l~~~~~~Lk 95 (224)
T smart00828 29 YTISPEQAEVGRERIRALGLQGRIRIFYRDSA-KDPF-PDTYDLVFGFEVIHHIKDK-----------MDLFSNISRHLK 95 (224)
T ss_pred EECCHHHHHHHHHHHHhcCCCcceEEEecccc-cCCC-CCCCCEeehHHHHHhCCCH-----------HHHHHHHHHHcC
Confidence 5899999999988741 2478889974 4566 4589999999999988442 468888888775
No 44
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.07 E-value=5.8e-06 Score=56.02 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++.. ...+.++|+ ..+| ++||.|+++.+++|+ |.+.+...++++++.++
T Consensus 83 vD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~---~~fD~ii~~~~l~~~---------~~~~~~~~l~~i~~~~~ 149 (219)
T TIGR02021 83 VDISEQMVQMARNRAQGRDVAGNVEFEVNDL-LSLC---GEFDIVVCMDVLIHY---------PASDMAKALGHLASLTK 149 (219)
T ss_pred EECCHHHHHHHHHHHHhcCCCCceEEEECCh-hhCC---CCcCEEEEhhHHHhC---------CHHHHHHHHHHHHHHhC
Confidence 5999999999998752 357888997 4565 789999999988765 23456667777776554
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.02 E-value=1.2e-05 Score=53.45 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109 1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN 50 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d 50 (77)
+|+|++|++.++++.. ..+++.+|+ ..+|+.+++||+|+++.++++..+
T Consensus 70 iD~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~i~~~~~~~~~~~ 121 (223)
T TIGR01934 70 VDFSSEMLEVAKKKSELPLNIEFIQADA-EALPFEDNSFDAVTIAFGLRNVTD 121 (223)
T ss_pred EECCHHHHHHHHHHhccCCCceEEecch-hcCCCCCCcEEEEEEeeeeCCccc
Confidence 5899999999998753 467889998 468888899999999999887744
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.99 E-value=1.6e-05 Score=53.27 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN 50 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d 50 (77)
+|+|++|++.|+++. ....++.+|+ ..+|+.+++||+|+++.+++++.+
T Consensus 82 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~I~~~~~l~~~~~ 136 (239)
T PRK00216 82 LDFSEGMLAVGREKLRDLGLSGNVEFVQGDA-EALPFPDNSFDAVTIAFGLRNVPD 136 (239)
T ss_pred EeCCHHHHHHHHHhhcccccccCeEEEeccc-ccCCCCCCCccEEEEecccccCCC
Confidence 589999999998874 2357888997 568888899999999999988754
No 47
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.92 E-value=1.7e-05 Score=54.97 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.-|+.||+|.. .+++.++|+.+ ..+++.||.|+.+-++.|+.+ .+.|++++.++.+.|.
T Consensus 71 vDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~--~~P~~~FDLIV~SEVlYYL~~--------~~~L~~~l~~l~~~L~ 137 (201)
T PF05401_consen 71 VDISPRALARARERLAGLPHVEWIQADVPE--FWPEGRFDLIVLSEVLYYLDD--------AEDLRAALDRLVAALA 137 (201)
T ss_dssp EES-HHHHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGSSS--------HHHHHHHHHHHHHTEE
T ss_pred EeCCHHHHHHHHHhcCCCCCeEEEECcCCC--CCCCCCeeEEEEehHhHcCCC--------HHHHHHHHHHHHHHhC
Confidence 5999999999999963 46899999854 457899999999999999954 3567778787777664
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.89 E-value=4.1e-06 Score=56.76 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|+|++|++.|+++. .+.+++++|+.+.+| +.+++||.|+++....|..... +........+++++++.|
T Consensus 70 VD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~---~~~~~~~~~~l~~i~~~L 146 (202)
T PRK00121 70 IEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRH---HKRRLVQPEFLALYARKL 146 (202)
T ss_pred EEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccc---cccccCCHHHHHHHHHHc
Confidence 699999999998753 245789999624566 7889999999988777764321 111122466788888877
Q ss_pred h
Q psy4109 74 W 74 (77)
Q Consensus 74 ~ 74 (77)
+
T Consensus 147 k 147 (202)
T PRK00121 147 K 147 (202)
T ss_pred C
Confidence 5
No 49
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.84 E-value=7.9e-06 Score=51.58 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|++. + ......-+. ...++.+++||+|+|+.+|+|+.|+ ..+++++++.|+
T Consensus 50 ~D~~~~~~~~---~--~~~~~~~~~-~~~~~~~~~fD~i~~~~~l~~~~d~-----------~~~l~~l~~~Lk 106 (161)
T PF13489_consen 50 VDISPQMIEK---R--NVVFDNFDA-QDPPFPDGSFDLIICNDVLEHLPDP-----------EEFLKELSRLLK 106 (161)
T ss_dssp EESSHHHHHH---T--TSEEEEEEC-HTHHCHSSSEEEEEEESSGGGSSHH-----------HHHHHHHHHCEE
T ss_pred EECCHHHHhh---h--hhhhhhhhh-hhhhccccchhhHhhHHHHhhcccH-----------HHHHHHHHHhcC
Confidence 5889999887 2 122222232 3456789999999999999999653 467777777664
No 50
>KOG2940|consensus
Probab=97.83 E-value=1.1e-05 Score=58.02 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109 1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA 51 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~ 51 (77)
+|-|-+|++.|+.-. .....+++| .+.|||.+++||.++|+..+||.-|+
T Consensus 101 ~DtS~~M~~s~~~~qdp~i~~~~~v~D-EE~Ldf~ens~DLiisSlslHW~NdL 153 (325)
T KOG2940|consen 101 MDTSYDMIKSCRDAQDPSIETSYFVGD-EEFLDFKENSVDLIISSLSLHWTNDL 153 (325)
T ss_pred eecchHHHHHhhccCCCceEEEEEecc-hhcccccccchhhhhhhhhhhhhccC
Confidence 589999999998653 234778899 58999999999999999999999764
No 51
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.82 E-value=6.1e-05 Score=49.63 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCC----------CCChHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKT----------SHNPAKRLYKFF 66 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~----------~~~p~~~l~~~~ 66 (77)
+|+|++|++.|+++. ...+++.+|..+ .+ +++||.|+++..++...+..+. +......+.+++
T Consensus 47 vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (179)
T TIGR00537 47 TDINPFAVKELRENAKLNNVGLDVVMTDLFK-GV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFL 123 (179)
T ss_pred EECCHHHHHHHHHHHHHcCCceEEEEccccc-cc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHH
Confidence 599999999998763 345778888743 32 5689999999887766543221 122345578889
Q ss_pred HHHHHHHhh
Q psy4109 67 SSLFACLWS 75 (77)
Q Consensus 67 ~~l~~~L~~ 75 (77)
..+++.|+.
T Consensus 124 ~~~~~~Lk~ 132 (179)
T TIGR00537 124 DELPEILKE 132 (179)
T ss_pred HhHHHhhCC
Confidence 998888863
No 52
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.77 E-value=5.3e-05 Score=54.25 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHhcC----CC--CcEEEccCCCCCCCCCC----ceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE----VE--GDLVLSDLGQGVPFRAG----AFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF 70 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~--~~~~~~D~~~~lPf~~~----sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~ 70 (77)
+|+|++||+.|+++. +. ...+++|+.+.+++... ...++++.++++++ ++.....+|++++
T Consensus 94 iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~---------~~~e~~~~L~~i~ 164 (301)
T TIGR03438 94 IDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNF---------TPEEAVAFLRRIR 164 (301)
T ss_pred EECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCC---------CHHHHHHHHHHHH
Confidence 699999999998773 22 35689998654554433 34566666677655 3566788999999
Q ss_pred HHHhh
Q psy4109 71 ACLWS 75 (77)
Q Consensus 71 ~~L~~ 75 (77)
+.|+.
T Consensus 165 ~~L~p 169 (301)
T TIGR03438 165 QLLGP 169 (301)
T ss_pred HhcCC
Confidence 98863
No 53
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.76 E-value=4.4e-05 Score=56.66 Aligned_cols=62 Identities=21% Similarity=0.385 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|++|++.|+++.. ..++..+|. ..+ +++||.|+|+.+++|+ +.+.+..+|+.+++.|+.
T Consensus 196 iDlS~~~l~~A~~~~~~l~v~~~~~D~-~~l---~~~fD~Ivs~~~~ehv---------g~~~~~~~l~~i~r~Lkp 259 (383)
T PRK11705 196 VTISAEQQKLAQERCAGLPVEIRLQDY-RDL---NGQFDRIVSVGMFEHV---------GPKNYRTYFEVVRRCLKP 259 (383)
T ss_pred EeCCHHHHHHHHHHhccCeEEEEECch-hhc---CCCCCEEEEeCchhhC---------ChHHHHHHHHHHHHHcCC
Confidence 5999999999998863 346777786 334 5789999999999876 234566789999988863
No 54
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.69 E-value=6.6e-05 Score=54.70 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHhcCC----------CCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109 1 MKKNAFYTNVARDREV----------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLC 49 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~----------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~ 49 (77)
+|+|++||+.|++|.. ..++.++|+ +.+ +++||.|+|+.+++|+.
T Consensus 172 vD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl-~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 172 SDISAAMVAEAERRAKEALAALPPEVLPKFEANDL-ESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred EECCHHHHHHHHHHHHhcccccccccceEEEEcch-hhc---CCCcCEEEEcCEEEecC
Confidence 5999999999998742 235677776 323 68999999999987653
No 55
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.69 E-value=6.7e-05 Score=50.52 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA 71 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~ 71 (77)
+|+|++|++.|+++.. ...+.++|+ +..+++||.|++..+++++.+ ..+...++++.+
T Consensus 91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~fD~v~~~~~l~~~~~---------~~~~~~l~~l~~ 154 (230)
T PRK07580 91 SDISPQMVEEARERAPEAGLAGNITFEVGDL----ESLLGRFDTVVCLDVLIHYPQ---------EDAARMLAHLAS 154 (230)
T ss_pred EECCHHHHHHHHHHHHhcCCccCcEEEEcCc----hhccCCcCEEEEcchhhcCCH---------HHHHHHHHHHHh
Confidence 5999999999988742 246777773 445789999999999876532 334555555544
No 56
>KOG1331|consensus
Probab=97.49 E-value=7.3e-05 Score=54.38 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|++.+.+..|++.+.. ...++|+ -.+|+++.+||+++|++++||+.+. .|-++.++++-++|+
T Consensus 71 ~D~c~~l~~~ak~~~~~-~~~~ad~-l~~p~~~~s~d~~lsiavihhlsT~--------~RR~~~l~e~~r~lr 134 (293)
T KOG1331|consen 71 CDLCTGLLGGAKRSGGD-NVCRADA-LKLPFREESFDAALSIAVIHHLSTR--------ERRERALEELLRVLR 134 (293)
T ss_pred cchhhhhccccccCCCc-eeehhhh-hcCCCCCCccccchhhhhhhhhhhH--------HHHHHHHHHHHHHhc
Confidence 58889999999888742 5788997 5799999999999999999999653 445556666666664
No 57
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.48 E-value=2.5e-05 Score=56.04 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCC-CCCCceeeeeeccchhhhccc
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNA 51 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~ 51 (77)
+|||+.||++|.+|+.|-.+.++|+..-++ ..+..||.|++.-|+-|+-++
T Consensus 153 vDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~L 204 (287)
T COG4976 153 VDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGAL 204 (287)
T ss_pred CchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhhcch
Confidence 699999999999999988888888632333 468899999999999999554
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.45 E-value=0.00038 Score=42.10 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|++.|+++. ...+++.+|+...++...++||.|++..... .++++++.+++.|+
T Consensus 49 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~--------------~~~~~l~~~~~~Lk 113 (124)
T TIGR02469 49 IERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG--------------LLQEILEAIWRRLR 113 (124)
T ss_pred EcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch--------------hHHHHHHHHHHHcC
Confidence 599999999998652 2357788886433555567899999975432 23578888888876
No 59
>PLN03075 nicotianamine synthase; Provisional
Probab=97.44 E-value=0.00015 Score=52.78 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHhcC-------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE-------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|++++|++.||+.. ...++.++|+.+ ++-..+.||.|++. +++++...++ ++.|.++++.|
T Consensus 155 iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k---------~~vL~~l~~~L 223 (296)
T PLN03075 155 FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD-VTESLKEYDVVFLA-ALVGMDKEEK---------VKVIEHLGKHM 223 (296)
T ss_pred EeCCHHHHHHHHHHhhhccCccCCcEEEECchhh-cccccCCcCEEEEe-cccccccccH---------HHHHHHHHHhc
Confidence 599999999999764 136899999865 43235789999999 8887743322 34677777766
Q ss_pred h
Q psy4109 74 W 74 (77)
Q Consensus 74 ~ 74 (77)
+
T Consensus 224 k 224 (296)
T PLN03075 224 A 224 (296)
T ss_pred C
Confidence 5
No 60
>KOG4300|consensus
Probab=97.44 E-value=0.00018 Score=50.93 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHhcC-----CCC-cEEEccCCCCCC-CCCCceeeeeeccchhhhccc
Q psy4109 1 MKKNAFYTNVARDRE-----VEG-DLVLSDLGQGVP-FRAGAFDGAISISALQWLCNA 51 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~-~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~ 51 (77)
+|.|+.|-+.|.++. .+. .+++++ ++++| ..++|+|+|++.+++.=.+|+
T Consensus 105 lDpn~~mee~~~ks~~E~k~~~~~~fvva~-ge~l~~l~d~s~DtVV~TlvLCSve~~ 161 (252)
T KOG4300|consen 105 LDPNEKMEEIADKSAAEKKPLQVERFVVAD-GENLPQLADGSYDTVVCTLVLCSVEDP 161 (252)
T ss_pred eCCcHHHHHHHHHHHhhccCcceEEEEeec-hhcCcccccCCeeeEEEEEEEeccCCH
Confidence 589999999987654 233 488899 58999 899999999999999755443
No 61
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.43 E-value=0.0005 Score=49.65 Aligned_cols=71 Identities=8% Similarity=-0.025 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+++.|++.|+++. ....++++|+ ..+|+.+++||+|+++.-+.- ......+...+-.+++++.+++.|+
T Consensus 210 ~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~-~~l~~~~~~~D~Iv~dPPyg~--~~~~~~~~~~~l~~~~l~~~~r~Lk 285 (329)
T TIGR01177 210 CDIDWKMVAGARINLEHYGIEDFFVKRGDA-TKLPLSSESVDAIATDPPYGR--STTAAGDGLESLYERSLEEFHEVLK 285 (329)
T ss_pred EcCCHHHHHHHHHHHHHhCCCCCeEEecch-hcCCcccCCCCEEEECCCCcC--cccccCCchHHHHHHHHHHHHHHcc
Confidence 599999999998774 1247889998 579998999999999853311 0111123344556888888888874
No 62
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.38 E-value=0.00067 Score=46.72 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHhc-C----------------CCCcEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHH
Q psy4109 1 MKKNAFYTNVARDR-E----------------VEGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRL 62 (77)
Q Consensus 1 iDiS~~ML~~A~~r-~----------------~~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l 62 (77)
+|+|+.+++.|.++ + ...+++++|+. .++.. .+.||.|+-..+++ |.|+...
T Consensus 62 vD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~fD~i~D~~~~~---------~l~~~~R 131 (213)
T TIGR03840 62 VELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF-ALTAADLGPVDAVYDRAALI---------ALPEEMR 131 (213)
T ss_pred EeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCC-CCCcccCCCcCEEEechhhc---------cCCHHHH
Confidence 69999999986432 2 23577899984 45542 46799999988775 5567788
Q ss_pred HHHHHHHHHHHhh
Q psy4109 63 YKFFSSLFACLWS 75 (77)
Q Consensus 63 ~~~~~~l~~~L~~ 75 (77)
.++++.|++.|+.
T Consensus 132 ~~~~~~l~~lLkp 144 (213)
T TIGR03840 132 QRYAAHLLALLPP 144 (213)
T ss_pred HHHHHHHHHHcCC
Confidence 8899999998874
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.37 E-value=0.00018 Score=48.35 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|++|++.|+++. . ...+..+|+ ..+|.. +++||.|+++.+++++.++ ..+++++.+.|+
T Consensus 73 iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~ 140 (224)
T TIGR01983 73 IDASEENIEVAKLHAKKDPLLKIEYRCTSV-EDLAEKGAKSFDVVTCMEVLEHVPDP-----------QAFIRACAQLLK 140 (224)
T ss_pred EeCCHHHHHHHHHHHHHcCCCceEEEeCCH-HHhhcCCCCCccEEEehhHHHhCCCH-----------HHHHHHHHHhcC
Confidence 589999999998763 2 356777886 445554 4899999999999888543 345566555554
No 64
>PRK14967 putative methyltransferase; Provisional
Probab=97.37 E-value=0.00048 Score=46.99 Aligned_cols=72 Identities=15% Similarity=0.031 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCC----------CCCChHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADK----------TSHNPAKRLYKFF 66 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~----------~~~~p~~~l~~~~ 66 (77)
+|+|+.|++.|+++. ....++.+|+.+ ++.+++||+|+++.-+........ .+......+.+++
T Consensus 65 vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~--~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 142 (223)
T PRK14967 65 VDISRRAVRSARLNALLAGVDVDVRRGDWAR--AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLC 142 (223)
T ss_pred EECCHHHHHHHHHHHHHhCCeeEEEECchhh--hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHH
Confidence 599999999988763 235778888743 456789999999964322211100 1233455678888
Q ss_pred HHHHHHHh
Q psy4109 67 SSLFACLW 74 (77)
Q Consensus 67 ~~l~~~L~ 74 (77)
+.+++.|+
T Consensus 143 ~~a~~~Lk 150 (223)
T PRK14967 143 DAAPALLA 150 (223)
T ss_pred HHHHHhcC
Confidence 88888775
No 65
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.35 E-value=0.00025 Score=48.11 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|++|++.|+++. .+.+++++|+ +.++. +++||+|+++.. ..+..+++.+++.|+.
T Consensus 75 iD~s~~~l~~A~~~~~~~~l~~i~~~~~d~-~~~~~-~~~fDlV~~~~~---------------~~~~~~l~~~~~~Lkp 137 (187)
T PRK00107 75 VDSLGKKIAFLREVAAELGLKNVTVVHGRA-EEFGQ-EEKFDVVTSRAV---------------ASLSDLVELCLPLLKP 137 (187)
T ss_pred EeCcHHHHHHHHHHHHHcCCCCEEEEeccH-hhCCC-CCCccEEEEccc---------------cCHHHHHHHHHHhcCC
Confidence 599999999998753 2368899997 45776 889999999741 1235577777777753
No 66
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.35 E-value=0.00025 Score=51.44 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+++|++|++.|++|. . .+++...|.. . .++.||.|+|+++|+++ ..+....||+++++.|.
T Consensus 101 vTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r-d---~~e~fDrIvSvgmfEhv---------g~~~~~~ff~~~~~~L~ 167 (283)
T COG2230 101 VTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR-D---FEEPFDRIVSVGMFEHV---------GKENYDDFFKKVYALLK 167 (283)
T ss_pred eeCCHHHHHHHHHHHHHcCCCcccEEEecccc-c---cccccceeeehhhHHHh---------CcccHHHHHHHHHhhcC
Confidence 589999999998863 2 3567777762 2 34459999999999877 34778899999999986
Q ss_pred h
Q psy4109 75 S 75 (77)
Q Consensus 75 ~ 75 (77)
.
T Consensus 168 ~ 168 (283)
T COG2230 168 P 168 (283)
T ss_pred C
Confidence 3
No 67
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.33 E-value=0.00071 Score=49.69 Aligned_cols=66 Identities=18% Similarity=0.088 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|+.|++.|+++. ...+++.+|... ..++.||.|+|+..||+..+ .-.+...++++...+.|+.
T Consensus 226 vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~---~~~~~fDlIvsNPPFH~g~~------~~~~~~~~~i~~a~~~Lkp 295 (342)
T PRK09489 226 SDVSAAALESSRATLAANGLEGEVFASNVFS---DIKGRFDMIISNPPFHDGIQ------TSLDAAQTLIRGAVRHLNS 295 (342)
T ss_pred EECCHHHHHHHHHHHHHcCCCCEEEEccccc---ccCCCccEEEECCCccCCcc------ccHHHHHHHHHHHHHhcCc
Confidence 599999999998653 345677788632 23688999999999987422 2245677888888888764
No 68
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.27 E-value=0.001 Score=37.49 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHhc---C--CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDR---E--VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r---~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+++++++.++++ . ...+++.+|..+..+...+.||.++++.+++++ .+....+++.+...|+
T Consensus 27 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~ 95 (107)
T cd02440 27 VDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL----------VEDLARFLEEARRLLK 95 (107)
T ss_pred EeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh----------hhHHHHHHHHHHHHcC
Confidence 58999999988722 1 235788889754333367889999999998775 3455667777766654
No 69
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.27 E-value=0.00019 Score=51.20 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+++|++..+.|+++.. ..++..+|.. .++. +||.|+|+.++.++ +.+.+..+|+++++.|+
T Consensus 91 itlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~-~~~~---~fD~IvSi~~~Ehv---------g~~~~~~~f~~~~~~Lk 157 (273)
T PF02353_consen 91 ITLSEEQAEYARERIREAGLEDRVEVRLQDYR-DLPG---KFDRIVSIEMFEHV---------GRKNYPAFFRKISRLLK 157 (273)
T ss_dssp EES-HHHHHHHHHHHHCSTSSSTEEEEES-GG-G------S-SEEEEESEGGGT---------CGGGHHHHHHHHHHHSE
T ss_pred EECCHHHHHHHHHHHHhcCCCCceEEEEeecc-ccCC---CCCEEEEEechhhc---------ChhHHHHHHHHHHHhcC
Confidence 4689999999886642 2467888873 4543 99999999999765 45778899999999886
No 70
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.25 E-value=0.00044 Score=46.38 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHhc----C-CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDR----E-VEGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r----~-~~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|+|++|++.|+++ + .+.+++++|+ +.++ .+++||.|+|..
T Consensus 72 iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~-~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 72 LESNHKKVAFLREVKAELGLNNVEIVNGRA-EDFQ-HEEQFDVITSRA 117 (181)
T ss_pred EeCcHHHHHHHHHHHHHhCCCCeEEEecch-hhcc-ccCCccEEEehh
Confidence 59999999888754 2 2468899997 4564 367999999986
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.22 E-value=0.00025 Score=47.59 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC---CCCCceeeeeeccchhhhcccCCCCCChHHH-HHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP---FRAGAFDGAISISALQWLCNADKTSHNPAKR-LYKFFSSLFA 71 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP---f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~-l~~~~~~l~~ 71 (77)
+|+|++|++.|+++. .+.+++++|+. .++ +.+++||.|+.+..-.|... .|...+. ..++++.+++
T Consensus 46 vD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~-~~~~~~~~~~~~d~v~~~~pdpw~k~----~h~~~r~~~~~~l~~~~r 120 (194)
T TIGR00091 46 IEIHTPIVLAANNKANKLGLKNLHVLCGDAN-ELLDKFFPDGSLSKVFLNFPDPWPKK----RHNKRRITQPHFLKEYAN 120 (194)
T ss_pred EEeeHHHHHHHHHHHHHhCCCCEEEEccCHH-HHHHhhCCCCceeEEEEECCCcCCCC----CccccccCCHHHHHHHHH
Confidence 589999999997663 24688999973 343 45679999999977677533 2222111 2568888888
Q ss_pred HHhh
Q psy4109 72 CLWS 75 (77)
Q Consensus 72 ~L~~ 75 (77)
.|+.
T Consensus 121 ~Lkp 124 (194)
T TIGR00091 121 VLKK 124 (194)
T ss_pred HhCC
Confidence 8863
No 72
>PHA03411 putative methyltransferase; Provisional
Probab=97.21 E-value=0.00084 Score=48.61 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhc
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLC 49 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~ 49 (77)
+|+|+.|++.|+++.++.+++++|+. .++ .+++||+|+|+.-+.++.
T Consensus 94 VDisp~al~~Ar~n~~~v~~v~~D~~-e~~-~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 94 VELNPEFARIGKRLLPEAEWITSDVF-EFE-SNEKFDVVISNPPFGKIN 140 (279)
T ss_pred EECCHHHHHHHHHhCcCCEEEECchh-hhc-ccCCCcEEEEcCCccccC
Confidence 59999999999998777889999984 344 467899999999888753
No 73
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.19 E-value=0.00047 Score=46.78 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcc
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCN 50 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d 50 (77)
+|+|++|++.|+++. ...+++.+|+. .++ ..++.||.|+++.++++..+
T Consensus 76 iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~Ii~~~~l~~~~~ 129 (233)
T PRK05134 76 IDASEENIEVARLHALESGLKIDYRQTTAE-ELAAEHPGQFDVVTCMEMLEHVPD 129 (233)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEecCHH-HhhhhcCCCccEEEEhhHhhccCC
Confidence 589999999998763 23467888864 444 45689999999999888754
No 74
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.18 E-value=0.00027 Score=50.34 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccC
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNAD 52 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~ 52 (77)
+|+|++|++.|+.+. ..+++.+..+ +.+-...++||+|+|+=|++|++|++
T Consensus 87 iD~se~~I~~Ak~ha~e~gv~i~y~~~~~-edl~~~~~~FDvV~cmEVlEHv~dp~ 141 (243)
T COG2227 87 IDASEKPIEVAKLHALESGVNIDYRQATV-EDLASAGGQFDVVTCMEVLEHVPDPE 141 (243)
T ss_pred ecCChHHHHHHHHhhhhccccccchhhhH-HHHHhcCCCccEEEEhhHHHccCCHH
Confidence 699999999999664 3345666665 55665668999999999999997764
No 75
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.16 E-value=0.0011 Score=49.56 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHhcC----C----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE----V----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC 72 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~ 72 (77)
+|+|+.|++.|+++. . ..+++.+|..+. +.+++||+|+||.-+|+... .......++|+..++.
T Consensus 258 vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~~~~~fDlIlsNPPfh~~~~------~~~~ia~~l~~~a~~~ 329 (378)
T PRK15001 258 VDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VEPFRFNAVLCNPPFHQQHA------LTDNVAWEMFHHARRC 329 (378)
T ss_pred EECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--CCCCCEEEEEECcCcccCcc------CCHHHHHHHHHHHHHh
Confidence 599999999999763 2 236777886432 35678999999998886421 1234557889998888
Q ss_pred Hhh
Q psy4109 73 LWS 75 (77)
Q Consensus 73 L~~ 75 (77)
|+.
T Consensus 330 Lkp 332 (378)
T PRK15001 330 LKI 332 (378)
T ss_pred ccc
Confidence 863
No 76
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.12 E-value=0.0011 Score=43.55 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHhcC----CC-CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE----VE-GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~-~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.+++.|+++. .. .+++.+|..+.+ .++.||.|+||.=+++- .......+++++..-.+.|+
T Consensus 61 vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~--~~~~fD~Iv~NPP~~~~------~~~~~~~~~~~i~~a~~~Lk 131 (170)
T PF05175_consen 61 VDINPDALELAKRNAERNGLENVEVVQSDLFEAL--PDGKFDLIVSNPPFHAG------GDDGLDLLRDFIEQARRYLK 131 (170)
T ss_dssp EESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--CTTCEEEEEE---SBTT------SHCHHHHHHHHHHHHHHHEE
T ss_pred EcCCHHHHHHHHHHHHhcCccccccccccccccc--cccceeEEEEccchhcc------cccchhhHHHHHHHHHHhcc
Confidence 599999999998764 22 578899986544 48999999999764332 23345677888888777765
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=97.11 E-value=0.0019 Score=41.91 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHhcC----C-C--CcEEEccCCCCCCCCCCceeeeeeccchhhhc----------ccCCCCCChHHHHH
Q psy4109 1 MKKNAFYTNVARDRE----V-E--GDLVLSDLGQGVPFRAGAFDGAISISALQWLC----------NADKTSHNPAKRLY 63 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~--~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~----------d~~~~~~~p~~~l~ 63 (77)
+|+|++|++.|+++. . . ..++++|+.+ ++.+++||+|+++..+..-. -....+......+.
T Consensus 51 ~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (188)
T PRK14968 51 VDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE--PFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVID 128 (188)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcceEEEeccccc--cccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHH
Confidence 589999999997663 1 1 5678899754 45666899999986543210 00011233456678
Q ss_pred HHHHHHHHHHh
Q psy4109 64 KFFSSLFACLW 74 (77)
Q Consensus 64 ~~~~~l~~~L~ 74 (77)
.+++++++.|+
T Consensus 129 ~~i~~~~~~Lk 139 (188)
T PRK14968 129 RFLDEVGRYLK 139 (188)
T ss_pred HHHHHHHHhcC
Confidence 88888888875
No 78
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.03 E-value=0.0011 Score=44.47 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
.|++++|++.|+++.. ...+.+.|+ ..+|+.++++|.|+++.=+ +..-.-.+.+++++.++.+.+.
T Consensus 67 ~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~-~~l~~~~~~~d~IvtnPPy-------G~r~~~~~~~~~ly~~~~~~~~ 138 (179)
T PF01170_consen 67 SDIDPKAVRGARENLKAAGVEDYIDFIQWDA-RELPLPDGSVDAIVTNPPY-------GRRLGSKKDLEKLYRQFLRELK 138 (179)
T ss_dssp EESSHHHHHHHHHHHHHTT-CGGEEEEE--G-GGGGGTTSBSCEEEEE--S-------TTSHCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcccCCceEEEecch-hhcccccCCCCEEEECcch-------hhhccCHHHHHHHHHHHHHHHH
Confidence 4899999999998852 236888997 5799889999999999633 2222334567777777777665
Q ss_pred h
Q psy4109 75 S 75 (77)
Q Consensus 75 ~ 75 (77)
.
T Consensus 139 ~ 139 (179)
T PF01170_consen 139 R 139 (179)
T ss_dssp C
T ss_pred H
Confidence 4
No 79
>PRK00811 spermidine synthase; Provisional
Probab=97.02 E-value=0.00084 Score=47.88 Aligned_cols=66 Identities=23% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHhcC----------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHH
Q psy4109 1 MKKNAFYTNVARDRE----------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSS 68 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~ 68 (77)
+||+++|++.|++.. +..+++.+|+.+-++..+++||+|++.+.-.| .|...| ++||+.
T Consensus 106 VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~---------~~~~~l~t~ef~~~ 176 (283)
T PRK00811 106 VEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPV---------GPAEGLFTKEFYEN 176 (283)
T ss_pred EeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCC---------CchhhhhHHHHHHH
Confidence 589999999999764 23478899964434445789999999754222 222333 778888
Q ss_pred HHHHHhh
Q psy4109 69 LFACLWS 75 (77)
Q Consensus 69 l~~~L~~ 75 (77)
+.+.|+.
T Consensus 177 ~~~~L~~ 183 (283)
T PRK00811 177 CKRALKE 183 (283)
T ss_pred HHHhcCC
Confidence 8888763
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.99 E-value=0.0014 Score=44.53 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccC-----CCCCChHH----------
Q psy4109 1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNAD-----KTSHNPAK---------- 60 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~-----~~~~~p~~---------- 60 (77)
+|+|+.|++.|+++. . +.+++++|+.+ ++.+++||.|+++.-+....+.. ...+.|..
T Consensus 117 iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 194 (251)
T TIGR03534 117 VDISPEALAVARKNAARLGLDNVTFLQSDWFE--PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLD 194 (251)
T ss_pred EECCHHHHHHHHHHHHHcCCCeEEEEECchhc--cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHH
Confidence 589999999998763 1 35789999744 56688999999986543222111 11122322
Q ss_pred HHHHHHHHHHHHHhh
Q psy4109 61 RLYKFFSSLFACLWS 75 (77)
Q Consensus 61 ~l~~~~~~l~~~L~~ 75 (77)
.++.+++.+++.|+.
T Consensus 195 ~~~~~i~~~~~~L~~ 209 (251)
T TIGR03534 195 FYRRIIAQAPRLLKP 209 (251)
T ss_pred HHHHHHHHHHHhccc
Confidence 335777777777753
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.97 E-value=0.00096 Score=50.22 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCC--CCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGV--PFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSLFA 71 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~l--Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l~~ 71 (77)
+|++++|++.|.++. .+..++++|+. .+ ++.+++||.|+.++..-|.. ..| +|| ..++..+++
T Consensus 152 IEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~-~ll~~~~~~s~D~I~lnFPdPW~K----krH---RRlv~~~fL~e~~R 223 (390)
T PRK14121 152 IEIHTPSIEQVLKQIELLNLKNLLIINYDAR-LLLELLPSNSVEKIFVHFPVPWDK----KPH---RRVISEDFLNEALR 223 (390)
T ss_pred EECCHHHHHHHHHHHHHcCCCcEEEEECCHH-HhhhhCCCCceeEEEEeCCCCccc----cch---hhccHHHHHHHHHH
Confidence 589999999987663 24678999973 33 57899999999887666642 233 454 788999998
Q ss_pred HHhh
Q psy4109 72 CLWS 75 (77)
Q Consensus 72 ~L~~ 75 (77)
.|+.
T Consensus 224 vLkp 227 (390)
T PRK14121 224 VLKP 227 (390)
T ss_pred HcCC
Confidence 8863
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.96 E-value=0.0012 Score=44.38 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|+|++|++.|+++. .+..++.+|+.+.++..++.||.|+++.
T Consensus 71 vD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 71 VDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred EECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 599999999988662 2356788887443554567899999964
No 83
>KOG1270|consensus
Probab=96.94 E-value=0.001 Score=48.17 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHhcC---C-------C-CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE---V-------E-GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSL 69 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~-------~-~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l 69 (77)
+|+|+.|++.|+++. | | .++.+.|+ +.+ -+.||+|+|+-+++|+.|+ +.|+..+
T Consensus 117 ID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~-E~~---~~~fDaVvcsevleHV~dp-----------~~~l~~l 181 (282)
T KOG1270|consen 117 IDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV-EGL---TGKFDAVVCSEVLEHVKDP-----------QEFLNCL 181 (282)
T ss_pred ecccHHHHHHHHHhhhcCchhccccceeeehhhcch-hhc---ccccceeeeHHHHHHHhCH-----------HHHHHHH
Confidence 699999999999773 1 1 24566675 444 2339999999999999775 3455555
Q ss_pred HHHHh
Q psy4109 70 FACLW 74 (77)
Q Consensus 70 ~~~L~ 74 (77)
.+.|+
T Consensus 182 ~~~lk 186 (282)
T KOG1270|consen 182 SALLK 186 (282)
T ss_pred HHHhC
Confidence 55554
No 84
>PHA03412 putative methyltransferase; Provisional
Probab=96.90 E-value=0.0011 Score=47.11 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l 45 (77)
+||++.|++.|+++.....++.+|+ ...++ +++||.||||-=+
T Consensus 82 VEID~~Al~~Ar~n~~~~~~~~~D~-~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 82 VELNHTYYKLGKRIVPEATWINADA-LTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred EECCHHHHHHHHhhccCCEEEEcch-hcccc-cCCccEEEECCCC
Confidence 5899999999998877788999997 44554 6789999999743
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.90 E-value=0.00075 Score=45.70 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISALQWL 48 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~ 48 (77)
+|+|++|++.|+++. . ..+++.+|..+.+| .+++||.|+++.++.++
T Consensus 103 iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 103 VEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAAASTI 155 (205)
T ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEccCcchh
Confidence 589999999998763 1 25788999754344 56799999999887654
No 86
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.89 E-value=0.0026 Score=43.98 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|+|+.|++.|+++.. ..+++.+|+.+ |+.+++||.|+|+.
T Consensus 138 iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~--~~~~~~fD~Iv~np 183 (275)
T PRK09328 138 VDISPEALAVARRNAKHGLGARVEFLQGDWFE--PLPGGRFDLIVSNP 183 (275)
T ss_pred EECCHHHHHHHHHHHHhCCCCcEEEEEccccC--cCCCCceeEEEECC
Confidence 5999999999998732 45789999744 34478999999974
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.88 E-value=0.0028 Score=45.22 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|+|++|++.|+++. . ..+++++|+.+. +++++||+|+|+.
T Consensus 151 vDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NP 197 (284)
T TIGR03533 151 VDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNP 197 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECC
Confidence 599999999998773 2 257899997543 4567899999983
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.88 E-value=0.0018 Score=44.13 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l 45 (77)
+|++++|++.|+++. .+.+++++|.. ..+..++.||.|++..++
T Consensus 107 vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~-~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 107 IERIPELAEKAKKTLKKLGYDNVEVIVGDGT-LGYEENAPYDRIYVTAAG 155 (212)
T ss_pred EeCCHHHHHHHHHHHHHcCCCCeEEEECCcc-cCCCcCCCcCEEEECCCc
Confidence 589999999998874 23688999974 344567899999998765
No 89
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.87 E-value=0.0031 Score=45.61 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeeccc------hhhhc-----ccC---CCCCChHH
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISISA------LQWLC-----NAD---KTSHNPAK 60 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~~------l~w~~-----d~~---~~~~~p~~ 60 (77)
+|+|+.|++.|+++. . ..+++++|+.+.+ .+++||.|+|+.= +.-+. .+. ..+.....
T Consensus 163 vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~ 240 (307)
T PRK11805 163 VDISPDALAVAEINIERHGLEDRVTLIESDLFAAL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLD 240 (307)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHH
Confidence 599999999998773 1 2578999975444 4678999999831 11010 010 01223345
Q ss_pred HHHHHHHHHHHHHh
Q psy4109 61 RLYKFFSSLFACLW 74 (77)
Q Consensus 61 ~l~~~~~~l~~~L~ 74 (77)
..+++++...+.|+
T Consensus 241 ~~~~i~~~a~~~L~ 254 (307)
T PRK11805 241 LVRRILAEAPDYLT 254 (307)
T ss_pred HHHHHHHHHHHhcC
Confidence 56778888777775
No 90
>PRK01581 speE spermidine synthase; Validated
Probab=96.83 E-value=0.0014 Score=49.17 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHhc------------CCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDR------------EVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68 (77)
Q Consensus 1 iDiS~~ML~~A~~r------------~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~ 68 (77)
+||+++|++.|++. .+..+++.+|+.+-++-.++.||+|+... .|+... +...-.-++||+.
T Consensus 180 VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl-----~DP~~~-~~~~LyT~EFy~~ 253 (374)
T PRK01581 180 VDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDF-----PDPATE-LLSTLYTSELFAR 253 (374)
T ss_pred EeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcC-----CCcccc-chhhhhHHHHHHH
Confidence 58999999999961 13457888997544555678899999984 233211 1222233678888
Q ss_pred HHHHHhh
Q psy4109 69 LFACLWS 75 (77)
Q Consensus 69 l~~~L~~ 75 (77)
+++.|+.
T Consensus 254 ~~~~LkP 260 (374)
T PRK01581 254 IATFLTE 260 (374)
T ss_pred HHHhcCC
Confidence 8888763
No 91
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.75 E-value=0.0029 Score=41.40 Aligned_cols=45 Identities=4% Similarity=-0.057 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHhcCC---CCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109 1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVPFRAGAFDGAISISALQ 46 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~ 46 (77)
+|+++.|++.++++.. +.+++++|+ ..+++.++.||.|+|+.-++
T Consensus 41 vE~~~~~~~~~~~~~~~~~~v~ii~~D~-~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 41 IEIDPRLAPRLREKFAAADNLTVIHGDA-LKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred EECCHHHHHHHHHHhccCCCEEEEECch-hcCCccccCCCEEEECCCcc
Confidence 5899999999998853 467899997 57888887899999997653
No 92
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.70 E-value=0.0055 Score=46.67 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCC-CCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPF-RAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf-~~~sFD~v~s~~ 43 (77)
+|+|++|++.|+++. .+.+++++|+.+ ..+ .+++||.|+||.
T Consensus 281 VDiS~~ALe~AreNa~~~g~rV~fi~gDl~e-~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 281 SDISPPALETARKNAADLGARVEFAHGSWFD-TDMPSEGKWDIIVSNP 327 (423)
T ss_pred EECCHHHHHHHHHHHHHcCCcEEEEEcchhc-cccccCCCccEEEECC
Confidence 599999999998773 245789999743 222 356899999986
No 93
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.66 E-value=0.0034 Score=46.11 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHhcC---------------CCCcEEEccCCC-----CCCCCCCceeeeeeccchhhhcccCCCCCChHH
Q psy4109 1 MKKNAFYTNVARDRE---------------VEGDLVLSDLGQ-----GVPFRAGAFDGAISISALQWLCNADKTSHNPAK 60 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---------------~~~~~~~~D~~~-----~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~ 60 (77)
+|||++-|+.|++|. -...++.+|... .++.....||+|-+-++|||.... .+
T Consensus 91 ~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fes-------e~ 163 (331)
T PF03291_consen 91 IDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFES-------EE 163 (331)
T ss_dssp EES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSS-------HH
T ss_pred EeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCC-------HH
Confidence 599999999999886 123667887532 233334699999999999997543 57
Q ss_pred HHHHHHHHHHHHHhh
Q psy4109 61 RLYKFFSSLFACLWS 75 (77)
Q Consensus 61 ~l~~~~~~l~~~L~~ 75 (77)
..+.++.++.+.|+.
T Consensus 164 ~ar~~l~Nvs~~Lk~ 178 (331)
T PF03291_consen 164 KARQFLKNVSSLLKP 178 (331)
T ss_dssp HHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHhcCC
Confidence 888999999988863
No 94
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.53 E-value=0.0065 Score=43.05 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|+|++|++.|+++. . ..+++++|+.+ ++.++.||+|+|+.
T Consensus 144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~--~~~~~~fDlIvsNP 190 (284)
T TIGR00536 144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFE--PLAGQKIDIIVSNP 190 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhc--cCcCCCccEEEECC
Confidence 599999999999763 2 25789999854 44555899999984
No 95
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.52 E-value=0.0046 Score=40.91 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l 45 (77)
+|+|++|++.|+++. ...+++.+|+. .++ +++||+|++....
T Consensus 61 vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~--~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 61 IERNPDALRLIKENRQRFGCGNIDIIPGEAP--IEL-PGKADAIFIGGSG 107 (187)
T ss_pred EECCHHHHHHHHHHHHHhCCCCeEEEecCch--hhc-CcCCCEEEECCCc
Confidence 599999999998753 23567888862 344 4679999987643
No 96
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.48 E-value=0.0022 Score=43.88 Aligned_cols=54 Identities=9% Similarity=-0.071 Sum_probs=35.7
Q ss_pred CCcEEEccCCCCC--------CCCCCceeeeeeccchhhhcccCCCCCChHH---HHHHHHHHHHHHHh
Q psy4109 17 EGDLVLSDLGQGV--------PFRAGAFDGAISISALQWLCNADKTSHNPAK---RLYKFFSSLFACLW 74 (77)
Q Consensus 17 ~~~~~~~D~~~~l--------Pf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~---~l~~~~~~l~~~L~ 74 (77)
+..++++|+. .. ++.+++||.|+|+.+.+|..++. ...+. -+...++.+++.|+
T Consensus 92 ~v~~i~~D~~-~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~---~d~~~~~~~~~~~L~~~~~~Lk 156 (209)
T PRK11188 92 GVDFLQGDFR-DELVLKALLERVGDSKVQVVMSDMAPNMSGTPA---VDIPRAMYLVELALDMCRDVLA 156 (209)
T ss_pred CcEEEecCCC-ChHHHHHHHHHhCCCCCCEEecCCCCccCCChH---HHHHHHHHHHHHHHHHHHHHcC
Confidence 4678999985 43 36789999999999988865432 11111 13456777776664
No 97
>PRK03612 spermidine synthase; Provisional
Probab=96.44 E-value=0.0023 Score=49.27 Aligned_cols=68 Identities=18% Similarity=-0.040 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHhcC------------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE------------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~ 68 (77)
+|++++|++.|+++. +..+++.+|..+-+...+++||.|++...-.+.+.. ..-.-++||+.
T Consensus 327 VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~------~~L~t~ef~~~ 400 (521)
T PRK03612 327 VDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPAL------GKLYSVEFYRL 400 (521)
T ss_pred EECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcch------hccchHHHHHH
Confidence 589999999999831 345788899744344456799999998532221100 00111457777
Q ss_pred HHHHHh
Q psy4109 69 LFACLW 74 (77)
Q Consensus 69 l~~~L~ 74 (77)
+.+.|+
T Consensus 401 ~~~~L~ 406 (521)
T PRK03612 401 LKRRLA 406 (521)
T ss_pred HHHhcC
Confidence 777765
No 98
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.43 E-value=0.0056 Score=42.05 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHH----hcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVAR----DREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 1 iDiS~~ML~~A~----~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|+|+.-++.++ +++...+..+.|+. ...+ ++.||.|+|..|++++. ++.+...++++-+++
T Consensus 58 vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~-~~~~-~~~yD~I~st~v~~fL~---------~~~~~~i~~~m~~~~ 123 (192)
T PF03848_consen 58 VDISPVALEKLQRLAEEEGLDIRTRVADLN-DFDF-PEEYDFIVSTVVFMFLQ---------RELRPQIIENMKAAT 123 (192)
T ss_dssp EESSHHHHHHHHHHHHHTT-TEEEEE-BGC-CBS--TTTEEEEEEESSGGGS----------GGGHHHHHHHHHHTE
T ss_pred EECCHHHHHHHHHHHhhcCceeEEEEecch-hccc-cCCcCEEEEEEEeccCC---------HHHHHHHHHHHHhhc
Confidence 588988777654 44555778889984 5666 46899999999998873 334455555554443
No 99
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.42 E-value=0.013 Score=40.54 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHh-cCC----------------CCcEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHH
Q psy4109 1 MKKNAFYTNVARD-REV----------------EGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRL 62 (77)
Q Consensus 1 iDiS~~ML~~A~~-r~~----------------~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l 62 (77)
+|+|+..++.|.+ ++. ..++.++|+ ..++.. .+.||.|+-..+++ |-|++..
T Consensus 65 vD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~-~~l~~~~~~~fd~v~D~~~~~---------~l~~~~R 134 (218)
T PRK13255 65 VELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF-FALTAADLADVDAVYDRAALI---------ALPEEMR 134 (218)
T ss_pred EccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc-cCCCcccCCCeeEEEehHhHh---------hCCHHHH
Confidence 6999999998743 321 246788997 455433 36899999998875 4467788
Q ss_pred HHHHHHHHHHHhh
Q psy4109 63 YKFFSSLFACLWS 75 (77)
Q Consensus 63 ~~~~~~l~~~L~~ 75 (77)
.++++.|++.|+.
T Consensus 135 ~~~~~~l~~lL~p 147 (218)
T PRK13255 135 ERYVQQLAALLPA 147 (218)
T ss_pred HHHHHHHHHHcCC
Confidence 8899999998864
No 100
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.36 E-value=0.002 Score=38.91 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC 72 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~ 72 (77)
+|+++..++.|+++.. ..+++++|.. .++ +.++.||.|+++.-+.... .......+...+++....+.
T Consensus 29 vdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~D~Iv~npP~~~~~---~~~~~~~~~~~~~~~~~~~~ 104 (117)
T PF13659_consen 29 VDIDPEAVELARRNLPRNGLDDRVEVIVGDAR-DLPEPLPDGKFDLIVTNPPYGPRS---GDKAALRRLYSRFLEAAARL 104 (117)
T ss_dssp EESSHHHHHHHHHHCHHCTTTTTEEEEESHHH-HHHHTCTTT-EEEEEE--STTSBT---T----GGCHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHccCCceEEEEECchh-hchhhccCceeEEEEECCCCcccc---ccchhhHHHHHHHHHHHHHH
Confidence 5899999999998752 2488999974 454 7899999999997553211 11122233556777777766
Q ss_pred Hh
Q psy4109 73 LW 74 (77)
Q Consensus 73 L~ 74 (77)
|+
T Consensus 105 L~ 106 (117)
T PF13659_consen 105 LK 106 (117)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.29 E-value=0.0081 Score=42.75 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|++.|+++.. ......+|. .++.++.||.|+++...+ .+.+++..+++.|+
T Consensus 188 vDid~~al~~a~~n~~~n~~~~~~~~~~~~~---~~~~~~~fDlVvan~~~~--------------~l~~ll~~~~~~Lk 250 (288)
T TIGR00406 188 IDIDPLAVESARKNAELNQVSDRLQVKLIYL---EQPIEGKADVIVANILAE--------------VIKELYPQFSRLVK 250 (288)
T ss_pred EECCHHHHHHHHHHHHHcCCCcceEEEeccc---ccccCCCceEEEEecCHH--------------HHHHHHHHHHHHcC
Confidence 5999999999988742 123344442 344578999999986543 34567777777765
Q ss_pred h
Q psy4109 75 S 75 (77)
Q Consensus 75 ~ 75 (77)
.
T Consensus 251 p 251 (288)
T TIGR00406 251 P 251 (288)
T ss_pred C
Confidence 3
No 102
>PRK04457 spermidine synthase; Provisional
Probab=96.17 E-value=0.0041 Score=43.94 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHH--HHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKR--LYKFFSSLFAC 72 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~--l~~~~~~l~~~ 72 (77)
+|++++|++.|+++. ...+++.+|+.+-++-.+++||+|+... + +. ..++.. ..+||+.+.++
T Consensus 96 VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~-~----~~----~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 96 VEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG-F----DG----EGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred EECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-C----CC----CCCccccCcHHHHHHHHHh
Confidence 589999999999874 2247888997544444467899999863 1 11 111222 35888888888
Q ss_pred Hhh
Q psy4109 73 LWS 75 (77)
Q Consensus 73 L~~ 75 (77)
|+.
T Consensus 167 L~p 169 (262)
T PRK04457 167 LSS 169 (262)
T ss_pred cCC
Confidence 764
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.11 E-value=0.008 Score=40.48 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWL 48 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~ 48 (77)
+|+|++|++.|+++. .+.+++.+|..+.+| ..++||.|++..+++++
T Consensus 106 vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 106 VERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILVTAAAPEI 157 (212)
T ss_pred EeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEEccCchhh
Confidence 589999999998763 236788999754333 35789999998766544
No 104
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.10 E-value=0.0063 Score=41.25 Aligned_cols=45 Identities=13% Similarity=-0.033 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISALQ 46 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~ 46 (77)
+|++++|++.|+++. .+.+++++|+.+ .+...+.||.|++..+..
T Consensus 108 vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~-~~~~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 108 IERIPELAEKAERRLRKLGLDNVIVIVGDGTQ-GWEPLAPYDRIYVTAAGP 157 (215)
T ss_pred EeCCHHHHHHHHHHHHHCCCCCeEEEECCccc-CCcccCCCCEEEEcCCcc
Confidence 589999999998774 246789999744 333457899999886543
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.07 E-value=0.017 Score=44.43 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|+|++|++.|+++. . ...++++|+.+ ++.++.||.|+||.
T Consensus 168 vDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~--~~~~~~fDlIvsNP 214 (506)
T PRK01544 168 TDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE--NIEKQKFDFIVSNP 214 (506)
T ss_pred EECCHHHHHHHHHHHHHcCCccceeeeecchhh--hCcCCCccEEEECC
Confidence 599999999999873 1 35788899744 33467899999986
No 106
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.023 Score=42.35 Aligned_cols=72 Identities=10% Similarity=-0.022 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHhcCCCC-----cEEEc-cCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEG-----DLVLS-DLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~-----~~~~~-D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+||...|++-|+.|..+. .+..+ |+ ..+|+++.+||+|++=.=. =.....+.....+=+.++|+.++++|+
T Consensus 225 ~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da-~~lpl~~~~vdaIatDPPY--Grst~~~~~~l~~Ly~~~le~~~evLk 301 (347)
T COG1041 225 SDIDERMVRGAKINLEYYGIEDYPVLKVLDA-TNLPLRDNSVDAIATDPPY--GRSTKIKGEGLDELYEEALESASEVLK 301 (347)
T ss_pred cchHHHHHhhhhhhhhhhCcCceeEEEeccc-ccCCCCCCccceEEecCCC--CcccccccccHHHHHHHHHHHHHHHhh
Confidence 599999999999886322 24444 97 5799999999999986421 111112333445667888888888886
Q ss_pred h
Q psy4109 75 S 75 (77)
Q Consensus 75 ~ 75 (77)
+
T Consensus 302 ~ 302 (347)
T COG1041 302 P 302 (347)
T ss_pred c
Confidence 4
No 107
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.00 E-value=0.015 Score=43.79 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeee
Q psy4109 1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAIS 41 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s 41 (77)
+|+|++|++.++++. . +.+++++|+ ..++ .+++||.|+.
T Consensus 281 vD~s~~~l~~~~~~~~~~g~~~v~~~~~Da-~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 281 VDRYPQKLEKIRSHASALGITIIETIEGDA-RSFS-PEEQPDAILL 324 (445)
T ss_pred EECCHHHHHHHHHHHHHhCCCeEEEEeCcc-cccc-cCCCCCEEEE
Confidence 599999999998764 1 357888997 4454 5678999994
No 108
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.91 E-value=0.021 Score=40.55 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+ |+|++.|+++.. ..+++.+|+ ...++++ +|+++.+.++|.+. .+...+.|++++++|+
T Consensus 179 ~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~-~~~~~~~--~D~v~~~~~lh~~~---------~~~~~~il~~~~~~L~ 245 (306)
T TIGR02716 179 LNL-PGAIDLVNENAAEKGVADRMRGIAVDI-YKESYPE--ADAVLFCRILYSAN---------EQLSTIMCKKAFDAMR 245 (306)
T ss_pred Eec-HHHHHHHHHHHHhCCccceEEEEecCc-cCCCCCC--CCEEEeEhhhhcCC---------hHHHHHHHHHHHHhcC
Confidence 465 789999986631 247899997 3455543 69999888887542 2345678888988886
Q ss_pred h
Q psy4109 75 S 75 (77)
Q Consensus 75 ~ 75 (77)
.
T Consensus 246 p 246 (306)
T TIGR02716 246 S 246 (306)
T ss_pred C
Confidence 3
No 109
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.91 E-value=0.01 Score=39.33 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCC--------CCCCceeeeeeccchh----hhcccCCCCCChHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVP--------FRAGAFDGAISISALQ----WLCNADKTSHNPAKRLYKFFSS 68 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lP--------f~~~sFD~v~s~~~l~----w~~d~~~~~~~p~~~l~~~~~~ 68 (77)
+|+|+.| +..+.+++++|+.+ .+ +.+++||+|++..+.+ |..+ .+...+.++..++.
T Consensus 63 vDis~~~------~~~~i~~~~~d~~~-~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~----~~~~~~~~~~~l~~ 131 (188)
T TIGR00438 63 VDLQPMK------PIENVDFIRGDFTD-EEVLNKIRERVGDDKVDVVMSDAAPNISGYWDID----HLRSIDLVELALDI 131 (188)
T ss_pred Eeccccc------cCCCceEEEeeCCC-hhHHHHHHHHhCCCCccEEEcCCCCCCCCCcccc----HHHHHHHHHHHHHH
Confidence 4777755 22346788889743 32 4577899999976422 2211 11122345778888
Q ss_pred HHHHHhh
Q psy4109 69 LFACLWS 75 (77)
Q Consensus 69 l~~~L~~ 75 (77)
+++.|+.
T Consensus 132 ~~~~Lkp 138 (188)
T TIGR00438 132 AKEVLKP 138 (188)
T ss_pred HHHHccC
Confidence 8888763
No 110
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.90 E-value=0.025 Score=40.93 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=33.8
Q ss_pred cEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 19 DLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 19 ~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
.+.+.|+.+ .|+. .+.||+|+|-.++.|+. ++..++.+.+++.+|+
T Consensus 207 ~F~~~NL~~-~~~~~~~~fD~I~cRNvliyF~---------~~~~~~vl~~l~~~L~ 253 (287)
T PRK10611 207 DFQQLNLLA-KQWAVPGPFDAIFCRNVMIYFD---------KTTQERILRRFVPLLK 253 (287)
T ss_pred EEEcccCCC-CCCccCCCcceeeHhhHHhcCC---------HHHHHHHHHHHHHHhC
Confidence 567778754 3332 68899999999998873 3456678888888875
No 111
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.70 E-value=0.014 Score=41.20 Aligned_cols=67 Identities=15% Similarity=0.001 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA 71 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~ 71 (77)
+|++++|++.|++.. +..+++.+|..+-+...+++||+|++.....+ +....-.-+++|+.+.+
T Consensus 102 veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~-------~~~~~l~~~ef~~~~~~ 174 (270)
T TIGR00417 102 VDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV-------GPAETLFTKEFYELLKK 174 (270)
T ss_pred EeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC-------CcccchhHHHHHHHHHH
Confidence 589999999998863 12456777753323333679999998754211 11111113577778777
Q ss_pred HHh
Q psy4109 72 CLW 74 (77)
Q Consensus 72 ~L~ 74 (77)
.|+
T Consensus 175 ~L~ 177 (270)
T TIGR00417 175 ALN 177 (270)
T ss_pred HhC
Confidence 775
No 112
>KOG2361|consensus
Probab=95.64 E-value=0.037 Score=39.88 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHhcCCC----CcEEEccCCC---CCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREVE----GDLVLSDLGQ---GVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~----~~~~~~D~~~---~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|.||.-++.-+++..+ ....+.|++. .-|...+++|.++.++|| +..+++.....+.+|++.|
T Consensus 103 cDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---------SAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 103 CDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---------SAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred cCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE---------eccChHHHHHHHHHHHHHh
Confidence 58999999998877532 3445567653 346789999999999999 7889999999999999988
Q ss_pred h
Q psy4109 74 W 74 (77)
Q Consensus 74 ~ 74 (77)
+
T Consensus 174 K 174 (264)
T KOG2361|consen 174 K 174 (264)
T ss_pred C
Confidence 5
No 113
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.52 E-value=0.039 Score=38.72 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHhcCC--CCcEEEccCCCCCCC-CCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDREV--EGDLVLSDLGQGVPF-RAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~--~~~~~~~D~~~~lPf-~~~sFD~v~s~~ 43 (77)
+|+|+.|++.|+++.. ..+++++|+.+.++- ..+.||.|+++.
T Consensus 116 vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 116 ADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred EECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECC
Confidence 5999999999997742 247899997544431 246799999995
No 114
>PLN02366 spermidine synthase
Probab=95.40 E-value=0.021 Score=41.54 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHH
Q psy4109 1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSS 68 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~ 68 (77)
+||+++|++.|++.. +..+++.+|+.+-+. ..++.||+|++-..- + ..|...| ++||+.
T Consensus 121 VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~d-----p----~~~~~~L~t~ef~~~ 191 (308)
T PLN02366 121 CEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSD-----P----VGPAQELFEKPFFES 191 (308)
T ss_pred EECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCC-----C----CCchhhhhHHHHHHH
Confidence 589999999999864 235788899532222 125789999986432 2 1223333 678888
Q ss_pred HHHHHhh
Q psy4109 69 LFACLWS 75 (77)
Q Consensus 69 l~~~L~~ 75 (77)
++++|+.
T Consensus 192 ~~~~L~p 198 (308)
T PLN02366 192 VARALRP 198 (308)
T ss_pred HHHhcCC
Confidence 8888763
No 115
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.36 E-value=0.069 Score=37.47 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHhc-----------------CCCCcEEEccCCCCCCCC---CCceeeeeeccchhhhcccCCCCCChHH
Q psy4109 1 MKKNAFYTNVARDR-----------------EVEGDLVLSDLGQGVPFR---AGAFDGAISISALQWLCNADKTSHNPAK 60 (77)
Q Consensus 1 iDiS~~ML~~A~~r-----------------~~~~~~~~~D~~~~lPf~---~~sFD~v~s~~~l~w~~d~~~~~~~p~~ 60 (77)
+|+|+.-++.+.++ +..++++++|+ ..++.. -+.||+|+=..+|+ +.|+.
T Consensus 71 vDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~-f~l~~~~~~~~~fD~VyDra~~~---------Alpp~ 140 (226)
T PRK13256 71 IELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI-FNLPKIANNLPVFDIWYDRGAYI---------ALPND 140 (226)
T ss_pred EecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC-cCCCccccccCCcCeeeeehhHh---------cCCHH
Confidence 58999999987552 23458999998 567642 26899999988885 55677
Q ss_pred HHHHHHHHHHHHHhh
Q psy4109 61 RLYKFFSSLFACLWS 75 (77)
Q Consensus 61 ~l~~~~~~l~~~L~~ 75 (77)
...+..+.+++.|+.
T Consensus 141 ~R~~Y~~~l~~lL~p 155 (226)
T PRK13256 141 LRTNYAKMMLEVCSN 155 (226)
T ss_pred HHHHHHHHHHHHhCC
Confidence 788888888887763
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.33 E-value=0.056 Score=40.52 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCC--CCCCceeeeee
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVP--FRAGAFDGAIS 41 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lP--f~~~sFD~v~s 41 (77)
+|+|+.|++.++++. ....++++|+. .++ +.+++||.|++
T Consensus 274 ~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~-~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 274 LDIDAQRLERVRENLQRLGLKATVIVGDAR-DPAQWWDGQPFDRILL 319 (427)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEcCcc-cchhhcccCCCCEEEE
Confidence 599999999998774 23478899974 443 35678999994
No 117
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.20 E-value=0.019 Score=39.88 Aligned_cols=57 Identities=12% Similarity=-0.020 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+.|++.|+++.....+ .+. -.++..+.+||.|+++... ..+..++..+++.|+
T Consensus 148 iDis~~~l~~A~~n~~~~~~--~~~-~~~~~~~~~fD~Vvani~~--------------~~~~~l~~~~~~~Lk 204 (250)
T PRK00517 148 VDIDPQAVEAARENAELNGV--ELN-VYLPQGDLKADVIVANILA--------------NPLLELAPDLARLLK 204 (250)
T ss_pred EECCHHHHHHHHHHHHHcCC--Cce-EEEccCCCCcCEEEEcCcH--------------HHHHHHHHHHHHhcC
Confidence 59999999999987521111 010 1123333489999998542 234566777777765
No 118
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.13 E-value=0.013 Score=44.01 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCC---CCCCCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQG---VPFRAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~---lPf~~~sFD~v~s~ 42 (77)
+|+|++|++.|+++. .+.+++++|+.+. +|+.+++||+|+++
T Consensus 325 vD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 325 VEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred EeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 599999999998763 2468999997432 34667889999875
No 119
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.98 E-value=0.12 Score=29.22 Aligned_cols=48 Identities=29% Similarity=0.373 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHhcC--CC---CcEEEccCCC-CCCCCC-Cceeeeeeccchhhh
Q psy4109 1 MKKNAFYTNVARDRE--VE---GDLVLSDLGQ-GVPFRA-GAFDGAISISALQWL 48 (77)
Q Consensus 1 iDiS~~ML~~A~~r~--~~---~~~~~~D~~~-~lPf~~-~sFD~v~s~~~l~w~ 48 (77)
+|+++.|++.++.+. .. ..++.+|... .+|+.+ ..||.+.+....+|.
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 132 (257)
T COG0500 78 VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL 132 (257)
T ss_pred EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehhcC
Confidence 589999999966554 21 3678888643 288888 599999555555544
No 120
>PRK04266 fibrillarin; Provisional
Probab=94.73 E-value=0.053 Score=37.72 Aligned_cols=42 Identities=7% Similarity=-0.149 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHhcC---CCCcEEEccCCCC---CCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE---VEGDLVLSDLGQG---VPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~---lPf~~~sFD~v~s~~ 43 (77)
+|+|++|++.+.++. .+..++.+|+..+ .++ +++||.|++..
T Consensus 102 vD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~ 149 (226)
T PRK04266 102 VEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDV 149 (226)
T ss_pred EECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECC
Confidence 599999998654332 3567889997432 122 45699999753
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=94.72 E-value=0.063 Score=40.32 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC----CCCCceeeeee
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP----FRAGAFDGAIS 41 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP----f~~~sFD~v~s 41 (77)
+|+|+.|++.++++. .+..++++|+ ..++ +.+++||.|+.
T Consensus 283 ~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~-~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 283 VDRSASRLKKLQENAQRLGLKSIKILAADS-RNLLELKPQWRGYFDRILL 331 (434)
T ss_pred EcCCHHHHHHHHHHHHHcCCCeEEEEeCCh-hhcccccccccccCCEEEE
Confidence 599999999998763 1357888997 4555 55789999995
No 122
>KOG1975|consensus
Probab=94.71 E-value=0.037 Score=41.58 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHhcCC-----------CCcEEEccCC-----CCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV-----------EGDLVLSDLG-----QGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYK 64 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----------~~~~~~~D~~-----~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~ 64 (77)
+||+..-+++|++|.- .+.++.||-. +.+++.+..||.|-|-+++||.- .-.+..++
T Consensus 146 iDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaF-------etee~ar~ 218 (389)
T KOG1975|consen 146 IDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAF-------ETEESARI 218 (389)
T ss_pred eehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeee-------ccHHHHHH
Confidence 6899999999998841 2467888743 35677788899999999999953 23577889
Q ss_pred HHHHHHHHHh
Q psy4109 65 FFSSLFACLW 74 (77)
Q Consensus 65 ~~~~l~~~L~ 74 (77)
++.++.++|+
T Consensus 219 ~l~Nva~~Lk 228 (389)
T KOG1975|consen 219 ALRNVAKCLK 228 (389)
T ss_pred HHHHHHhhcC
Confidence 9999998885
No 123
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=94.58 E-value=0.039 Score=41.63 Aligned_cols=40 Identities=8% Similarity=0.176 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCC-CCCCceeeeee
Q psy4109 1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVP-FRAGAFDGAIS 41 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lP-f~~~sFD~v~s 41 (77)
+|+|+.|++.++++.. ..+++++|+ ..+| +.+++||.|++
T Consensus 268 ~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da-~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 268 VDISREKIQLVEKHAKRLKLSSIEIKIADA-ERLTEYVQDTFDRILV 313 (431)
T ss_pred EECCHHHHHHHHHHHHHcCCCeEEEEECch-hhhhhhhhccCCEEEE
Confidence 5999999999987741 247888997 4566 56788999985
No 124
>PRK04148 hypothetical protein; Provisional
Probab=94.56 E-value=0.082 Score=34.54 Aligned_cols=58 Identities=17% Similarity=0.018 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|++++.++.|++++ .+++++|+.++-+---..+|+|.|+ .|+..|.+.+-+|.+..+
T Consensus 45 IDi~~~aV~~a~~~~--~~~v~dDlf~p~~~~y~~a~liysi--------------rpp~el~~~~~~la~~~~ 102 (134)
T PRK04148 45 IDINEKAVEKAKKLG--LNAFVDDLFNPNLEIYKNAKLIYSI--------------RPPRDLQPFILELAKKIN 102 (134)
T ss_pred EECCHHHHHHHHHhC--CeEEECcCCCCCHHHHhcCCEEEEe--------------CCCHHHHHHHHHHHHHcC
Confidence 599999999998886 5789999865332225568999988 467778888888777653
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.39 E-value=0.035 Score=40.65 Aligned_cols=44 Identities=9% Similarity=-0.084 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l 45 (77)
+|+|++|++.|+++. .+..++++|.. ..+...+.||+|++...+
T Consensus 111 VDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~-~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 111 VEYSRKICEIAKRNVRRLGIENVIFVCGDGY-YGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred EECCHHHHHHHHHHHHHcCCCcEEEEeCChh-hcccccCCccEEEECCch
Confidence 589999999998753 13578889964 444456789999997654
No 126
>PLN02672 methionine S-methyltransferase
Probab=94.19 E-value=0.041 Score=46.20 Aligned_cols=48 Identities=17% Similarity=-0.034 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHhcCC---------------------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109 1 MKKNAFYTNVARDREV---------------------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCN 50 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~---------------------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d 50 (77)
+|||++|++.|++|.. ..+++++|+.+.++-....||.||||- =|+.+
T Consensus 148 vDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNP--PYI~~ 216 (1082)
T PLN02672 148 LDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCI--PQILN 216 (1082)
T ss_pred EECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECC--CcCCC
Confidence 5999999999976631 257899998654422224699999996 44443
No 127
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.03 E-value=0.09 Score=36.99 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|.++..++.|++... ..++++.-+ +.+--.++.||.|+.-.++.|| ..+.|..||++--+.|+
T Consensus 84 VEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL-Q~f~P~~~~YDlIW~QW~lghL---------TD~dlv~fL~RCk~~L~ 152 (218)
T PF05891_consen 84 VEPVEKFLEQAKEYLGKDNPRVGEFYCVGL-QDFTPEEGKYDLIWIQWCLGHL---------TDEDLVAFLKRCKQALK 152 (218)
T ss_dssp EES-HHHHHHHHHHTCCGGCCEEEEEES-G-GG----TT-EEEEEEES-GGGS----------HHHHHHHHHHHHHHEE
T ss_pred eccCHHHHHHHHHHhcccCCCcceEEecCH-hhccCCCCcEeEEEehHhhccC---------CHHHHHHHHHHHHHhCc
Confidence 4678899999985432 246777766 4343346799999987777655 45778889998887775
No 128
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.00 E-value=0.043 Score=38.75 Aligned_cols=43 Identities=5% Similarity=-0.106 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHhcC--CCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109 1 MKKNAFYTNVARDRE--VEGDLVLSDLGQGVPFRAGAFDGAISISA 44 (77)
Q Consensus 1 iDiS~~ML~~A~~r~--~~~~~~~~D~~~~lPf~~~sFD~v~s~~~ 44 (77)
+|++++|++.++++. .+.+++++|+ ..+++.+-.+|.|++|.-
T Consensus 70 vE~d~~~~~~~~~~~~~~~v~~i~~D~-~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 70 VEIDRDLAPILAETFAEDNLTIIEGDA-LKVDLSELQPLKVVANLP 114 (272)
T ss_pred EECCHHHHHHHHHhhccCceEEEEChh-hcCCHHHcCcceEEEeCC
Confidence 589999999998875 3568999997 567765533688988853
No 129
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.86 E-value=0.073 Score=36.44 Aligned_cols=46 Identities=15% Similarity=0.095 Sum_probs=26.6
Q ss_pred cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 19 DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 19 ~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
.+.+.|+.+ .+...+.||+|+|--|+-|+.. +..++.+.+++++|+
T Consensus 121 ~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~---------~~~~~vl~~l~~~L~ 166 (196)
T PF01739_consen 121 RFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP---------ETQQRVLRRLHRSLK 166 (196)
T ss_dssp EEEE--TT--S------EEEEEE-SSGGGS-H---------HHHHHHHHHHGGGEE
T ss_pred EEEecccCC-CCcccCCccEEEecCEEEEeCH---------HHHHHHHHHHHHHcC
Confidence 567778755 3446788999999999999843 445677777777764
No 130
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=93.82 E-value=0.076 Score=37.16 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109 1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFDGAISISALQ 46 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~ 46 (77)
+|+++.|++.++++. .+.+++++|+ ..+++. .||.|+||.-++
T Consensus 57 vEid~~~~~~l~~~~~~~~~v~ii~~D~-~~~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 57 IELDPRLAEFLRDDEIAAGNVEIIEGDA-LKVDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred EECCHHHHHHHHHHhccCCCEEEEEecc-ccCCch--hceEEEEcCCcc
Confidence 589999999999875 2467899997 567764 489999997654
No 131
>PLN02823 spermine synthase
Probab=93.81 E-value=0.082 Score=39.00 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+||.+++++.|++.. +..+++.+|..+-+...++.||+|+.-.
T Consensus 133 VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~ 184 (336)
T PLN02823 133 CDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDL 184 (336)
T ss_pred EECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecC
Confidence 589999999999764 2357888997555555678899999874
No 132
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=93.72 E-value=0.13 Score=38.70 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~ 42 (77)
+|+|++|++.++++. ...+++++|+.+..+..+++||.|++.
T Consensus 281 vDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 281 LDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 599999999998763 135788999743222223789999975
No 133
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.22 E-value=0.038 Score=39.72 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCC-CCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPF-RAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf-~~~sFD~v~s~ 42 (77)
+|+|++|++.|+++. .+.+++++|+. .++. .++.||.|+.+
T Consensus 201 vD~s~~av~~A~~n~~~~~l~~v~~~~~D~~-~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 201 IEISAEAIACAKQSAAELGLTNVQFQALDST-QFATAQGEVPDLVLVN 247 (315)
T ss_pred EeCCHHHHHHHHHHHHHcCCCceEEEEcCHH-HHHHhcCCCCeEEEEC
Confidence 599999999998763 24689999974 3332 34679999977
No 134
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.22 E-value=0.098 Score=34.79 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeee
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAIS 41 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s 41 (77)
+|+|++|++.|+++. .+.+++.+|+.+.++.....+|.++.
T Consensus 70 vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 70 IERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCI 115 (196)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence 599999999998763 23578888874334333344566543
No 135
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=93.12 E-value=0.24 Score=39.52 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCC--CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFR--AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC 72 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~--~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~ 72 (77)
+|++++|++.|+++. . ...+.++|+. .++.. .++||.|++|.= |-... .-...+..+|..+-+.
T Consensus 262 ~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~-~~~~~~~~~~~d~IvtNPP--Yg~r~-----~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 262 SDIDPRVIQAARKNARRAGVAELITFEVKDVA-DLKNPLPKGPTGLVISNPP--YGERL-----GEEPALIALYSQLGRR 333 (702)
T ss_pred EECCHHHHHHHHHHHHHcCCCcceEEEeCChh-hcccccccCCCCEEEECCC--CcCcc-----CchHHHHHHHHHHHHH
Confidence 599999999999884 2 2468899974 56543 468999999952 22111 1134566666666665
Q ss_pred Hh
Q psy4109 73 LW 74 (77)
Q Consensus 73 L~ 74 (77)
|+
T Consensus 334 lk 335 (702)
T PRK11783 334 LK 335 (702)
T ss_pred HH
Confidence 54
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=93.09 E-value=0.21 Score=35.08 Aligned_cols=40 Identities=13% Similarity=-0.069 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeee
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAIS 41 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s 41 (77)
+|+|+.|++.++++. .+..++++|+ ..++...+.||.|+.
T Consensus 102 ~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 102 NEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILL 146 (264)
T ss_pred EcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEE
Confidence 599999999998763 2346788886 456655677999985
No 137
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.91 E-value=0.09 Score=41.94 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|+|+.|++.|+++. . ..+++++|+.+-+.-.+++||.||+..
T Consensus 567 vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 567 VDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred EeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 699999999999874 2 257899997432322267899999974
No 138
>KOG2352|consensus
Probab=92.84 E-value=0.38 Score=37.44 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+|+|+--++....++ +...+...|+ ..+.|.+++||.++-.+++.-+......--. ....-..+..+++.|+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~-~~l~fedESFdiVIdkGtlDal~~de~a~~~-~~~v~~~~~eVsrvl~ 152 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDM-DQLVFEDESFDIVIDKGTLDALFEDEDALLN-TAHVSNMLDEVSRVLA 152 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecc-hhccCCCcceeEEEecCccccccCCchhhhh-hHHhhHHHhhHHHHhc
Confidence 588888888877665 2357888998 5799999999999999999876432211100 1445566777777664
No 139
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=92.75 E-value=0.13 Score=38.55 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHhcCC----CCcE--EEccCCCCCCC--CCCceeeeee
Q psy4109 1 MKKNAFYTNVARDREV----EGDL--VLSDLGQGVPF--RAGAFDGAIS 41 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~----~~~~--~~~D~~~~lPf--~~~sFD~v~s 41 (77)
+|+|++|++.++++.. ...+ +.+|. ..+++ .+++||.|++
T Consensus 268 ~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~-~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 268 LDIHEHRLKRVYENLKRLGLTIKAETKDGDG-RGPSQWAENEQFDRILL 315 (426)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEecccc-ccccccccccccCEEEE
Confidence 5999999999987742 2223 55665 33443 5788999984
No 140
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=92.70 E-value=0.32 Score=35.72 Aligned_cols=66 Identities=21% Similarity=0.160 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHhcC----CCC-cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDRE----VEG-DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~-~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+|+|..-++.||++. +.. .++..|..+ |..+ .||.|+||-=|| .........-.++|..-.+.|++
T Consensus 188 vDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~--~v~~-kfd~IisNPPfh------~G~~v~~~~~~~~i~~A~~~L~~ 258 (300)
T COG2813 188 VDVNARAVESARKNLAANGVENTEVWASNLYE--PVEG-KFDLIISNPPFH------AGKAVVHSLAQEIIAAAARHLKP 258 (300)
T ss_pred EecCHHHHHHHHHhHHHcCCCccEEEEecccc--cccc-cccEEEeCCCcc------CCcchhHHHHHHHHHHHHHhhcc
Confidence 589999999998774 333 578888744 5556 999999997764 11223333444788887777764
No 141
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=92.41 E-value=0.11 Score=37.19 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccchhhhccc
Q psy4109 1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNA 51 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~ 51 (77)
+|||+.-|+.|++|.. ....+++|+-+ +.+. .||.|+||- =|++..
T Consensus 140 ~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~--~~~~-~fDlIVsNP--PYip~~ 190 (280)
T COG2890 140 VDISPDALALARENAERNGLVRVLVVQSDLFE--PLRG-KFDLIVSNP--PYIPAE 190 (280)
T ss_pred EECCHHHHHHHHHHHHHcCCccEEEEeeeccc--ccCC-ceeEEEeCC--CCCCCc
Confidence 5999999999987742 12467677643 3333 899999997 566654
No 142
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.37 E-value=0.13 Score=38.83 Aligned_cols=42 Identities=12% Similarity=-0.008 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+||++.|++.|+.|. + ..++.++|+ ..++-+-+.+|.+|||.
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~-~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADA-TDLKEPLEEYGVVISNP 307 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcch-hhCCCCCCcCCEEEeCC
Confidence 599999999999874 2 248999998 45653337899999996
No 143
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=92.25 E-value=0.091 Score=37.04 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=33.0
Q ss_pred cEEEccCCCCCCC---CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 19 DLVLSDLGQGVPF---RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 19 ~~~~~D~~~~lPf---~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
.+.++|.- ..|. .++.||+|++++|+.|++++...+ +++.+.++-|+
T Consensus 86 ~I~qqDFm-~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG--------~Ml~r~~~fL~ 135 (219)
T PF11968_consen 86 GILQQDFM-ERPLPKNESEKFDVISLSLVLNFVPDPKQRG--------EMLRRAHKFLK 135 (219)
T ss_pred Cceeeccc-cCCCCCCcccceeEEEEEEEEeeCCCHHHHH--------HHHHHHHHHhC
Confidence 45677763 3444 478999999999999997653222 56677776664
No 144
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=92.22 E-value=0.14 Score=36.67 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKF 65 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~ 65 (77)
+++.++|.+.|+++. .+++++++|+.+-.+ +.-.+||.|+||-= |+.........+.+.+.++
T Consensus 74 VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP--yf~~~~~~~~~~~~~~Ar~ 143 (248)
T COG4123 74 VEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP--YFKQGSRLNENPLRAIARH 143 (248)
T ss_pred EEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC--CCCCccccCcChhhhhhhh
Confidence 578999999998874 246899999854222 34557999999983 4444333344555554443
No 145
>PTZ00146 fibrillarin; Provisional
Probab=92.09 E-value=0.23 Score=36.25 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=29.6
Q ss_pred CCCCHH----HHHHHHhcCCCCcEEEccCCCC--CCCCCCceeeeeeccc
Q psy4109 1 MKKNAF----YTNVARDREVEGDLVLSDLGQG--VPFRAGAFDGAISISA 44 (77)
Q Consensus 1 iDiS~~----ML~~A~~r~~~~~~~~~D~~~~--lPf~~~sFD~v~s~~~ 44 (77)
+|+|++ |++.|+++ .+...+.+|+..+ .++..++||.|++..+
T Consensus 163 VD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 163 VEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred EECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 588986 66777655 4678899997432 2223468999999764
No 146
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=92.01 E-value=0.38 Score=32.80 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 5 AFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 5 ~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
|++++.|++ ....+++-||+-+++| . +|+++...++|-+. .+.-...+++++++|+
T Consensus 133 p~v~~~~~~-~~rv~~~~gd~f~~~P--~--~D~~~l~~vLh~~~---------d~~~~~iL~~~~~al~ 188 (241)
T PF00891_consen 133 PEVIEQAKE-ADRVEFVPGDFFDPLP--V--ADVYLLRHVLHDWS---------DEDCVKILRNAAAALK 188 (241)
T ss_dssp HHHHCCHHH-TTTEEEEES-TTTCCS--S--ESEEEEESSGGGS----------HHHHHHHHHHHHHHSE
T ss_pred Hhhhhcccc-ccccccccccHHhhhc--c--ccceeeehhhhhcc---------hHHHHHHHHHHHHHhC
Confidence 677777777 4457899999855443 3 99999999998774 4566778999998886
No 147
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.00 E-value=0.072 Score=33.91 Aligned_cols=35 Identities=20% Similarity=0.489 Sum_probs=27.5
Q ss_pred ceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 35 AFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 35 sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
.||+|+|-+|--|+- -....+.|++||+++|+.|+
T Consensus 1 ~yDvilclSVtkWIH-----Ln~GD~Gl~~~f~~~~~~L~ 35 (110)
T PF06859_consen 1 QYDVILCLSVTKWIH-----LNWGDEGLKRFFRRIYSLLR 35 (110)
T ss_dssp -EEEEEEES-HHHHH-----HHHHHHHHHHHHHHHHHHEE
T ss_pred CccEEEEEEeeEEEE-----ecCcCHHHHHHHHHHHHhhC
Confidence 389999999999962 13456899999999999885
No 148
>KOG3420|consensus
Probab=91.78 E-value=0.82 Score=31.18 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l 45 (77)
+||.|+-|+++++|. .+.+++++|+. .+-+..+.||.++-+.-|
T Consensus 77 fDIdpeALEIf~rNaeEfEvqidlLqcdil-dle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 77 FDIDPEALEIFTRNAEEFEVQIDLLQCDIL-DLELKGGIFDTAVINPPF 124 (185)
T ss_pred eecCHHHHHHHhhchHHhhhhhheeeeecc-chhccCCeEeeEEecCCC
Confidence 599999999999885 35689999995 577788999999988644
No 149
>KOG3045|consensus
Probab=91.22 E-value=0.37 Score=35.50 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=35.3
Q ss_pred CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 18 GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 18 ~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
-+++.+|++ .+|..|+|.|.+|.++++. + ..|..|+.+.++.|+
T Consensus 212 ~~V~~cDm~-~vPl~d~svDvaV~CLSLM--------g----tn~~df~kEa~RiLk 255 (325)
T KOG3045|consen 212 ERVIACDMR-NVPLEDESVDVAVFCLSLM--------G----TNLADFIKEANRILK 255 (325)
T ss_pred Cceeecccc-CCcCccCcccEEEeeHhhh--------c----ccHHHHHHHHHHHhc
Confidence 378999996 6999999999999998763 1 346678888888775
No 150
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=90.98 E-value=0.22 Score=34.33 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHhcCC-----CCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDREV-----EGDLVLSDLGQGVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~lPf~~~sFD~v~s~~~l 45 (77)
+|+.+++.+.|+++.. +..++++|....+| ..+.||.|++..+.
T Consensus 103 vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 103 VERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-EEAPFDRIIVTAAV 151 (209)
T ss_dssp EESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-GG-SEEEEEESSBB
T ss_pred ECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-cCCCcCEEEEeecc
Confidence 4788999999998852 45789999755555 46789999999876
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=90.45 E-value=0.21 Score=34.70 Aligned_cols=42 Identities=17% Similarity=0.023 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCC-----CCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPF-----RAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf-----~~~sFD~v~s~ 42 (77)
+|+++++++.|+++. . ..+++.+|+.+.+|- .+++||.||..
T Consensus 99 iD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiD 151 (234)
T PLN02781 99 IDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVD 151 (234)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEEC
Confidence 589999999998774 1 357899998654442 15789999876
No 152
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=90.39 E-value=0.69 Score=33.49 Aligned_cols=59 Identities=8% Similarity=-0.041 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+++|+.|...-++|+ .+++-.| ...-.+..||+|.|.-++--+.+| ..+++.|+++|+.
T Consensus 122 TE~S~~Mr~rL~~kg--~~vl~~~---~w~~~~~~fDvIscLNvLDRc~~P-----------~~LL~~i~~~l~p 180 (265)
T PF05219_consen 122 TEASPPMRWRLSKKG--FTVLDID---DWQQTDFKFDVISCLNVLDRCDRP-----------LTLLRDIRRALKP 180 (265)
T ss_pred ecCCHHHHHHHHhCC--CeEEehh---hhhccCCceEEEeehhhhhccCCH-----------HHHHHHHHHHhCC
Confidence 368999999988887 3344222 233346789999999999777665 3577777777753
No 153
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=90.23 E-value=0.27 Score=36.34 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=26.8
Q ss_pred CCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 27 QGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 27 ~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+.+|. .++||.|||++||=|..+| - .++..|.++|+
T Consensus 175 E~Lp~-~~~FDtVF~MGVLYHrr~P-------l----~~L~~Lk~~L~ 210 (315)
T PF08003_consen 175 EDLPN-LGAFDTVFSMGVLYHRRSP-------L----DHLKQLKDSLR 210 (315)
T ss_pred hhccc-cCCcCEEEEeeehhccCCH-------H----HHHHHHHHhhC
Confidence 57887 8899999999999887655 2 35555555554
No 154
>KOG2899|consensus
Probab=90.12 E-value=0.69 Score=33.71 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=30.2
Q ss_pred CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 31 FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 31 f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+....||+|+|.++=-|+- ++ -..+.|++||++|++-|.
T Consensus 162 ~~~~~fDiIlcLSiTkWIH-LN----wgD~GL~~ff~kis~ll~ 200 (288)
T KOG2899|consen 162 MIQPEFDIILCLSITKWIH-LN----WGDDGLRRFFRKISSLLH 200 (288)
T ss_pred hccccccEEEEEEeeeeEe-cc----cccHHHHHHHHHHHHhhC
Confidence 4567899999999888862 22 124789999999998875
No 155
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.01 E-value=0.17 Score=39.53 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeecc-chhhhccc
Q psy4109 2 KKNAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISIS-ALQWLCNA 51 (77)
Q Consensus 2 DiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~-~l~w~~d~ 51 (77)
|..+...+.|-+|+..+-+-..- ++.|||++++||.|-|+- .+.|..+.
T Consensus 149 d~~~~qvqfaleRGvpa~~~~~~-s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 149 DEHEAQVQFALERGVPAMIGVLG-SQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred cCCchhhhhhhhcCcchhhhhhc-cccccCCccchhhhhcccccccchhcc
Confidence 44556778888998654322211 478999999999998877 45666553
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=89.94 E-value=0.12 Score=36.19 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEE-ccCCCCCC-CCCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVL-SDLGQGVP-FRAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~-~D~~~~lP-f~~~sFD~v~s~ 42 (77)
+|++++|.+.|+++.. ...++. +|..+.+- +.+++||.||-=
T Consensus 90 iE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 90 IERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred EeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 6899999999998852 135666 57655444 467999999854
No 157
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=89.90 E-value=0.34 Score=33.65 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHhcC---CCCcEEEccCCCCCCCCCCcee---eeeeccchh
Q psy4109 1 MKKNAFYTNVARDRE---VEGDLVLSDLGQGVPFRAGAFD---GAISISALQ 46 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~~~~~~~~D~~~~lPf~~~sFD---~v~s~~~l~ 46 (77)
+|+++.|++.++++. .+.+++++|+ ..+|+. .|| .|+|+.-++
T Consensus 57 iE~d~~~~~~l~~~~~~~~~v~v~~~D~-~~~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 57 IEIDPRLAEILRKLLSLYERLEVIEGDA-LKVDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred EECCHHHHHHHHHHhCcCCcEEEEECch-hcCChh--HcCCcceEEEcCChh
Confidence 589999999998774 3457899997 457764 577 899987653
No 158
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=89.46 E-value=0.29 Score=35.52 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=37.3
Q ss_pred CcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 18 GDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 18 ~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
.+++.||+.+-.+ |.|.+||+|+- ||-+.|+...=.=.+|+.++|+.|+
T Consensus 187 i~iilGD~~e~V~~~~D~sfDaIiH--------DPPRfS~AgeLYseefY~El~RiLk 236 (287)
T COG2521 187 IKIILGDAYEVVKDFDDESFDAIIH--------DPPRFSLAGELYSEEFYRELYRILK 236 (287)
T ss_pred cEEecccHHHHHhcCCccccceEee--------CCCccchhhhHhHHHHHHHHHHHcC
Confidence 4789999766555 88999999963 5666676665566788889988886
No 159
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=89.20 E-value=0.14 Score=38.11 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCC---CCCCCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQG---VPFRAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~---lPf~~~sFD~v~s~ 42 (77)
+|+|++|++.|+++. .+.+++++|+.+. +++.+++||.|+..
T Consensus 320 vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 320 IEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred EEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 589999999999763 2468999997432 23556789999853
No 160
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.17 E-value=0.54 Score=32.88 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l 45 (77)
+++.++..+.|+++. .+..++++|....+| ..+.||.|+...+.
T Consensus 100 iEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vtaaa 148 (209)
T COG2518 100 IERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIVTAAA 148 (209)
T ss_pred EEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEEeecc
Confidence 356678888898874 246889999766776 46889999999875
No 161
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=88.81 E-value=0.39 Score=34.70 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCCCCceeeeeeccchh
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFRAGAFDGAISISALQ 46 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~ 46 (77)
+|+++.|++.++++. .+.+++++|+. ..++ ..||.|++|.-++
T Consensus 64 vEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal-~~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 64 IEIDPRMVAELKKRFQNSPLASKLEVIEGDAL-KTEF--PYFDVCVANVPYQ 112 (294)
T ss_pred EECCHHHHHHHHHHHHhcCCCCcEEEEECCHh-hhcc--cccCEEEecCCcc
Confidence 589999999998763 23578999973 4543 4689999986543
No 162
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=88.28 E-value=0.21 Score=34.13 Aligned_cols=44 Identities=2% Similarity=-0.132 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISA 44 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~ 44 (77)
+|++++.++.|+++. .+.+++++|+.+.++...++||.|+++.=
T Consensus 82 vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 82 LEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred EECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 588999999988763 23578999975444433567999998854
No 163
>KOG1269|consensus
Probab=87.54 E-value=0.61 Score=34.92 Aligned_cols=43 Identities=23% Similarity=0.543 Sum_probs=33.8
Q ss_pred cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 19 DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 19 ~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
.++.+|.. ..||.+++||++-++-+.+|..+. ...++++|+++
T Consensus 163 ~~~~~~~~-~~~fedn~fd~v~~ld~~~~~~~~-----------~~~y~Ei~rv~ 205 (364)
T KOG1269|consen 163 NFVVADFG-KMPFEDNTFDGVRFLEVVCHAPDL-----------EKVYAEIYRVL 205 (364)
T ss_pred ceehhhhh-cCCCCccccCcEEEEeecccCCcH-----------HHHHHHHhccc
Confidence 55888985 689999999999999999998654 24666666654
No 164
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=87.47 E-value=0.37 Score=35.37 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=14.9
Q ss_pred CCCCceeeeeeccchhhhcc
Q psy4109 31 FRAGAFDGAISISALQWLCN 50 (77)
Q Consensus 31 f~~~sFD~v~s~~~l~w~~d 50 (77)
|+++|.|.++|..++||+..
T Consensus 103 fP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 103 FPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp S-TT-EEEEEEES-TTB-SS
T ss_pred CCCCceEEEEEechhhhccc
Confidence 68999999999999999975
No 165
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=86.78 E-value=0.9 Score=32.10 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=25.3
Q ss_pred CcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 18 GDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 18 ~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
-.++.+|+ ..+|..+++.|++|.+++|.- ..+..|+.+-++.|+
T Consensus 106 ~~Vtacdi-a~vPL~~~svDv~VfcLSLMG------------Tn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 106 PRVTACDI-ANVPLEDESVDVAVFCLSLMG------------TNWPDFIREANRVLK 149 (219)
T ss_dssp TTEEES-T-TS-S--TT-EEEEEEES---S------------S-HHHHHHHHHHHEE
T ss_pred CCEEEecC-ccCcCCCCceeEEEEEhhhhC------------CCcHHHHHHHHheec
Confidence 36899999 479999999999999987742 123446666666654
No 166
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=85.48 E-value=0.27 Score=36.96 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCC-C--CCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVP-F--RAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lP-f--~~~sFD~v~s~~ 43 (77)
+|+|+.|++.|+++. . ..+++++|+.+-++ + ..++||.||+..
T Consensus 249 VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 249 VDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred EECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 599999999998763 2 24689999743232 1 356899999874
No 167
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=85.45 E-value=5.6 Score=25.14 Aligned_cols=70 Identities=6% Similarity=0.002 Sum_probs=35.7
Q ss_pred CCHHHHHHHHhcCCCCc-EEEccCCCCCCCCCCceeeeeec---------------cchhh-hcccCCCCCCh---HHHH
Q psy4109 3 KNAFYTNVARDREVEGD-LVLSDLGQGVPFRAGAFDGAISI---------------SALQW-LCNADKTSHNP---AKRL 62 (77)
Q Consensus 3 iS~~ML~~A~~r~~~~~-~~~~D~~~~lPf~~~sFD~v~s~---------------~~l~w-~~d~~~~~~~p---~~~l 62 (77)
+++.+++..++++.... ..--.+. +.....||.|+.+ ..++| ++||...+..+ .+..
T Consensus 39 ~~~~a~~~l~e~Gid~~~~~~~~l~---~~~~~~~D~vitm~~~~~~~~~~~p~~~~~~~w~i~DP~~~~g~~~~~~~~~ 115 (129)
T TIGR02691 39 LNPNAVKAMKEVGIDISNQTSDLID---LDILNKADLVVTLCGDARDKCPATPPHVKREHWGLDDPARAEGTEEEKWAVF 115 (129)
T ss_pred cCHHHHHHHHHcCCCcCCcccccCC---hhhcccCCEEEEeCchhccCCCccCCCCeEEECCCCCCCCCCCCHHHHHHHH
Confidence 67888888888874321 1100110 1122357777755 13577 66664444333 4444
Q ss_pred HHHHHHHHHHHhh
Q psy4109 63 YKFFSSLFACLWS 75 (77)
Q Consensus 63 ~~~~~~l~~~L~~ 75 (77)
++.+..|.+++..
T Consensus 116 ~~~~~~I~~~v~~ 128 (129)
T TIGR02691 116 RRVRDEIKERVKD 128 (129)
T ss_pred HHHHHHHHHHHHh
Confidence 4555555555443
No 168
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=84.43 E-value=1.8 Score=30.76 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHhcC---CCC---cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE---VEG---DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~~~---~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|.|+.|++.++.-. ... ........+..++... |.|+++.+|.=+. .+....+.++|.+.+
T Consensus 64 vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--DLvi~s~~L~EL~---------~~~r~~lv~~LW~~~ 131 (274)
T PF09243_consen 64 VDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD--DLVIASYVLNELP---------SAARAELVRSLWNKT 131 (274)
T ss_pred ecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC--cEEEEehhhhcCC---------chHHHHHHHHHHHhc
Confidence 689999999887432 111 1111111122344333 9999999985442 244455666665544
No 169
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.76 E-value=1.1 Score=31.26 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHhcCC----CCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109 1 MKKNAFYTNVARDREV----EGDLVLSDLGQGVPFRAGAFDGAISISA 44 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~----~~~~~~~D~~~~lPf~~~sFD~v~s~~~ 44 (77)
+|+.+++++.|+++.. ..+++.+|+.+ .++.||.++-|-=
T Consensus 74 vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~----~~~~~dtvimNPP 117 (198)
T COG2263 74 VDIDPEALEIARANAEELLGDVEFVVADVSD----FRGKFDTVIMNPP 117 (198)
T ss_pred EecCHHHHHHHHHHHHhhCCceEEEEcchhh----cCCccceEEECCC
Confidence 5899999999998864 46899999743 3677887777653
No 170
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=81.94 E-value=3.1 Score=29.78 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=32.6
Q ss_pred CCCCHHHHHHH----HhcCCCCcEEEccCCCCCCCC-CCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 1 MKKNAFYTNVA----RDREVEGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 1 iDiS~~ML~~A----~~r~~~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+||.+.+|+.- ++.+...+.++.|+.++||-. -+.||.+++-- +--.+.++-|+++=-++|+
T Consensus 73 vDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP------------PyT~~G~~LFlsRgi~~Lk 139 (243)
T PF01861_consen 73 VDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP------------PYTPEGLKLFLSRGIEALK 139 (243)
T ss_dssp E-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---------------SSHHHHHHHHHHHHHTB-
T ss_pred EEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC------------CCCHHHHHHHHHHHHHHhC
Confidence 47888888764 444556789999998888843 68899999864 2334666667766655554
No 171
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=81.90 E-value=0.64 Score=34.38 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s~ 42 (77)
+|+|+.+++.|+++. . +.+++++|+.+.++-..+.||.|+..
T Consensus 261 vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 261 IEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred EECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 589999999998764 1 45789999743233223469998876
No 172
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=81.44 E-value=1.3 Score=31.98 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHhcCC---------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV---------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSL 69 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~---------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l 69 (77)
+||.+.+++.||+-.+ ..+++.+|..+=+.-...+||+|+.-++ |+. .|.+.| ++||+.+
T Consensus 106 VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~t-----dp~----gp~~~Lft~eFy~~~ 176 (282)
T COG0421 106 VEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDST-----DPV----GPAEALFTEEFYEGC 176 (282)
T ss_pred EEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCC-----CCC----CcccccCCHHHHHHH
Confidence 5899999999998753 2366777754434333448999999854 331 333333 6789999
Q ss_pred HHHHhh
Q psy4109 70 FACLWS 75 (77)
Q Consensus 70 ~~~L~~ 75 (77)
+++|+.
T Consensus 177 ~~~L~~ 182 (282)
T COG0421 177 RRALKE 182 (282)
T ss_pred HHhcCC
Confidence 888864
No 173
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=81.01 E-value=0.96 Score=31.72 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHhcC---------CCCcEEEccCCCCCCCCCC-ceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE---------VEGDLVLSDLGQGVPFRAG-AFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLF 70 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---------~~~~~~~~D~~~~lPf~~~-sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~ 70 (77)
+||.+.+++.|++-. +..+++.+|...-+--..+ .||+|+.-.. |+. +..+.---++||+.+.
T Consensus 106 VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~-----dp~--~~~~~l~t~ef~~~~~ 178 (246)
T PF01564_consen 106 VEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLT-----DPD--GPAPNLFTREFYQLCK 178 (246)
T ss_dssp EES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESS-----STT--SCGGGGSSHHHHHHHH
T ss_pred EecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCC-----CCC--CCcccccCHHHHHHHH
Confidence 589999999998753 2347888885332223344 8999998653 211 2222223367888888
Q ss_pred HHHh
Q psy4109 71 ACLW 74 (77)
Q Consensus 71 ~~L~ 74 (77)
++|+
T Consensus 179 ~~L~ 182 (246)
T PF01564_consen 179 RRLK 182 (246)
T ss_dssp HHEE
T ss_pred hhcC
Confidence 8775
No 174
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=80.89 E-value=2.1 Score=29.56 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHh-cCC----------------CCcEEEccCCCCCCCCC-CceeeeeeccchhhhcccCCCCCChHHHH
Q psy4109 1 MKKNAFYTNVARD-REV----------------EGDLVLSDLGQGVPFRA-GAFDGAISISALQWLCNADKTSHNPAKRL 62 (77)
Q Consensus 1 iDiS~~ML~~A~~-r~~----------------~~~~~~~D~~~~lPf~~-~sFD~v~s~~~l~w~~d~~~~~~~p~~~l 62 (77)
+|+|+.-++.|.+ ++. ..++++||. ..++-.. +.||+|+=-.+|+ ..|++..
T Consensus 65 vDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf-F~l~~~~~g~fD~iyDr~~l~---------Alpp~~R 134 (218)
T PF05724_consen 65 VDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF-FELPPEDVGKFDLIYDRTFLC---------ALPPEMR 134 (218)
T ss_dssp EES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T-TTGGGSCHHSEEEEEECSSTT---------TS-GGGH
T ss_pred EecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc-ccCChhhcCCceEEEEecccc---------cCCHHHH
Confidence 5899999999843 321 125788998 5565433 5799999888774 3455666
Q ss_pred HHHHHHHHHHHh
Q psy4109 63 YKFFSSLFACLW 74 (77)
Q Consensus 63 ~~~~~~l~~~L~ 74 (77)
.+..+.+++.|+
T Consensus 135 ~~Ya~~l~~ll~ 146 (218)
T PF05724_consen 135 ERYAQQLASLLK 146 (218)
T ss_dssp HHHHHHHHHCEE
T ss_pred HHHHHHHHHHhC
Confidence 666666666554
No 175
>KOG3191|consensus
Probab=80.65 E-value=3.8 Score=28.70 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=43.3
Q ss_pred CCCCHHHHHH----HHhcCCCCcEEEccCCCCCCCCCCceeeeeeccc----------hhhhcccCCCCCChHHHHHHHH
Q psy4109 1 MKKNAFYTNV----ARDREVEGDLVLSDLGQGVPFRAGAFDGAISISA----------LQWLCNADKTSHNPAKRLYKFF 66 (77)
Q Consensus 1 iDiS~~ML~~----A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~----------l~w~~d~~~~~~~p~~~l~~~~ 66 (77)
+||+|.-++. |+.+....+.++.|+...+ ++++.|.++-|-- .+|+.-.-..+....+...+++
T Consensus 74 tDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll 151 (209)
T KOG3191|consen 74 TDINPEALEATLETARCNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLL 151 (209)
T ss_pred ecCCHHHHHHHHHHHHhcCCccceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHH
Confidence 5899987766 5555566789999986655 6799999888751 2333332234455666666666
Q ss_pred HHH
Q psy4109 67 SSL 69 (77)
Q Consensus 67 ~~l 69 (77)
..+
T Consensus 152 ~~v 154 (209)
T KOG3191|consen 152 PQV 154 (209)
T ss_pred hhh
Confidence 443
No 176
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=80.53 E-value=3.1 Score=30.61 Aligned_cols=65 Identities=8% Similarity=0.066 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHhcCC-----CC--cEEEccCCCCCCC-----CCCceeeeeecc-chhhhcccCCCCCChHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV-----EG--DLVLSDLGQGVPF-----RAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFFS 67 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----~~--~~~~~D~~~~lPf-----~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~~ 67 (77)
+|||.++|+.+.++.. .. .-++||..+.+.+ ..+....++..+ +| +.-++..-..|++
T Consensus 110 lDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsi---------GNf~~~ea~~fL~ 180 (319)
T TIGR03439 110 LDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSI---------GNFSRPEAAAFLA 180 (319)
T ss_pred EECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccc---------cCCCHHHHHHHHH
Confidence 6999999999987753 22 3377777544321 123456666655 55 4445677778999
Q ss_pred HHHH-HHh
Q psy4109 68 SLFA-CLW 74 (77)
Q Consensus 68 ~l~~-~L~ 74 (77)
++.+ .|+
T Consensus 181 ~~~~~~l~ 188 (319)
T TIGR03439 181 GFLATALS 188 (319)
T ss_pred HHHHhhCC
Confidence 9988 764
No 177
>PLN02476 O-methyltransferase
Probab=80.49 E-value=0.43 Score=34.49 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCCC-----CCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVPF-----RAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lPf-----~~~sFD~v~s~ 42 (77)
+|+++++.+.|+++. . ..+++.||+.+-||- .+++||.||--
T Consensus 149 iE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFID 201 (278)
T PLN02476 149 CERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVD 201 (278)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEEC
Confidence 588999999998764 1 357888997665552 14689998864
No 178
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=80.47 E-value=8.9 Score=27.46 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCcEEEccCCCCCCCCC-----Cceeeeeeccchhhhc
Q psy4109 6 FYTNVARDREVEGDLVLSDLGQGVPFRA-----GAFDGAISISALQWLC 49 (77)
Q Consensus 6 ~ML~~A~~r~~~~~~~~~D~~~~lPf~~-----~sFD~v~s~~~l~w~~ 49 (77)
++-+..|++. .+++.+|+.+.-|+.+ ..||.|+|.+.+.-..
T Consensus 126 e~e~~lR~~V--k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~ 172 (256)
T PF01234_consen 126 EKEEKLRRAV--KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC 172 (256)
T ss_dssp HHHHHHHHHE--EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred hHHHHHHHhh--ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence 4444444443 3588899988777765 3599999999998763
No 179
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=79.92 E-value=0.71 Score=33.65 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHhcCC---CCcEEEccCCCCCC-CCC-C--ceeeeeeccch--hhhcccCC
Q psy4109 1 MKKNAFYTNVARDREV---EGDLVLSDLGQGVP-FRA-G--AFDGAISISAL--QWLCNADK 53 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~---~~~~~~~D~~~~lP-f~~-~--sFD~v~s~~~l--~w~~d~~~ 53 (77)
+|++++|++.|+++.. ...++++|..+ ++ ..+ + ++|+|+..+.+ +-++++++
T Consensus 50 iD~D~~al~~ak~~L~~~~ri~~i~~~f~~-l~~~l~~~~~~vDgIl~DLGvSs~Qld~~~R 110 (296)
T PRK00050 50 IDRDPDAIAAAKDRLKPFGRFTLVHGNFSN-LKEVLAEGLGKVDGILLDLGVSSPQLDDAER 110 (296)
T ss_pred EcCCHHHHHHHHHhhccCCcEEEEeCCHHH-HHHHHHcCCCccCEEEECCCccccccCCCcC
Confidence 5999999999998752 46788888743 33 122 2 79999887622 12455544
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=79.78 E-value=1.9 Score=31.70 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHhcC---C--C--CcEE-EccCCC---CCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDRE---V--E--GDLV-LSDLGQ---GVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~--~--~~~~-~~D~~~---~lPf~~~sFD~v~s~~~l 45 (77)
+||++.+++.|+++. + . .++. +.|... .+...++.||.|+||-=+
T Consensus 144 tDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 144 SDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPF 199 (321)
T ss_pred EeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCC
Confidence 599999999999763 1 1 2333 233221 111246789999999743
No 181
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=79.31 E-value=1.1 Score=30.36 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHH--HHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRL--YKFFSSLFA 71 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l--~~~~~~l~~ 71 (77)
+|++..-+..|.++. .+..++++|+..-++ +.++++|.|+-++ +||-.+...-.+|| ..|+..+++
T Consensus 47 iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-----PDPWpK~rH~krRl~~~~fl~~~~~ 121 (195)
T PF02390_consen 47 IEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-----PDPWPKKRHHKRRLVNPEFLELLAR 121 (195)
T ss_dssp EES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES----------SGGGGGGSTTSHHHHHHHHH
T ss_pred EecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-----CCCCcccchhhhhcCCchHHHHHHH
Confidence 356666666665442 467899999754344 4679999988774 55433332222322 456667776
Q ss_pred HHh
Q psy4109 72 CLW 74 (77)
Q Consensus 72 ~L~ 74 (77)
+|+
T Consensus 122 ~L~ 124 (195)
T PF02390_consen 122 VLK 124 (195)
T ss_dssp HEE
T ss_pred HcC
Confidence 664
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=76.76 E-value=5.3 Score=27.69 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHhcCCCCcEEEccCCCCCC-----CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 2 KKNAFYTNVARDREVEGDLVLSDLGQGVP-----FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 2 DiS~~ML~~A~~r~~~~~~~~~D~~~~lP-----f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
.+|++-..+-.++.+..+++.||+ ..+- +.+.-||.|||..=+- .-|.++--+.++++...|
T Consensus 80 E~~~dF~~~L~~~~p~~~ii~gda-~~l~~~l~e~~gq~~D~viS~lPll---------~~P~~~~iaile~~~~rl 146 (194)
T COG3963 80 EYSPDFVCHLNQLYPGVNIINGDA-FDLRTTLGEHKGQFFDSVISGLPLL---------NFPMHRRIAILESLLYRL 146 (194)
T ss_pred EeCHHHHHHHHHhCCCccccccch-hhHHHHHhhcCCCeeeeEEeccccc---------cCcHHHHHHHHHHHHHhc
Confidence 567888888888887778888885 5454 5688899999997442 234444455566655554
No 183
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=75.87 E-value=6.1 Score=28.45 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=33.9
Q ss_pred cEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 19 DLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 19 ~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
.|-+.|+...-| ..+.||+|+|=-|+-|++. +..++.+.+++..|+.
T Consensus 187 ~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~---------~~q~~il~~f~~~L~~ 233 (268)
T COG1352 187 RFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDE---------ETQERILRRFADSLKP 233 (268)
T ss_pred EEeecCCCCCcc-ccCCCCEEEEcceEEeeCH---------HHHHHHHHHHHHHhCC
Confidence 456667755444 6777999999999999953 3455677777777753
No 184
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.81 E-value=1.7 Score=32.91 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=18.3
Q ss_pred CCCCceeeeeeccchhhhcc
Q psy4109 31 FRAGAFDGAISISALQWLCN 50 (77)
Q Consensus 31 f~~~sFD~v~s~~~l~w~~d 50 (77)
|+++|.+.++|++++||+..
T Consensus 158 fP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred cCCCceEEEEeeccceeccc
Confidence 68999999999999999964
No 185
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=75.14 E-value=0.61 Score=31.29 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHhcC-C-----CCcEEEccCCCCCCC-CCCc-eeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE-V-----EGDLVLSDLGQGVPF-RAGA-FDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-~-----~~~~~~~D~~~~lPf-~~~s-FD~v~s~~ 43 (77)
+|+++..++.|+.+. . +.+++++|..+-++. ..+. ||.||.+-
T Consensus 27 idid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 27 IDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 589999999999885 2 248999997554432 2222 89999764
No 186
>KOG1271|consensus
Probab=72.28 E-value=8.6 Score=27.16 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHhc----CC-C-CcEEEccCCCCCCCCCCceeeeeeccch
Q psy4109 1 MKKNAFYTNVARDR----EV-E-GDLVLSDLGQGVPFRAGAFDGAISISAL 45 (77)
Q Consensus 1 iDiS~~ML~~A~~r----~~-~-~~~~~~D~~~~lPf~~~sFD~v~s~~~l 45 (77)
+|.|++-++.|+.. +. + +++.+.|+.. ..|..+.||.|.=-+++
T Consensus 97 vDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~-~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 97 VDYSEKAVELAQNIAERDGFSNEIRFQQLDITD-PDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccCHHHHHHHHHHHHhcCCCcceeEEEeeccC-CcccccceeEEeecCce
Confidence 68999999887632 32 2 7899999965 37888999998877765
No 187
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=71.84 E-value=1 Score=31.85 Aligned_cols=42 Identities=14% Similarity=-0.103 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCCC------CCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPFR------AGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf~------~~sFD~v~s~ 42 (77)
+|+++++.+.|++.. ...+++.||+.+-||-. .++||.||--
T Consensus 110 iE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiD 163 (247)
T PLN02589 110 MDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVD 163 (247)
T ss_pred EeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEec
Confidence 578899999998664 13578889877666631 3689998753
No 188
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=71.78 E-value=6.8 Score=27.01 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRAGAFDGAISISA 44 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~ 44 (77)
+|-++++++..++|. .+.+++.||+-+.|+-.+ +||+||-.+.
T Consensus 64 Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg 111 (187)
T COG2242 64 IERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG 111 (187)
T ss_pred EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC
Confidence 466788888877663 356889999766665333 7999998864
No 189
>PRK13530 arsenate reductase; Provisional
Probab=71.63 E-value=17 Score=23.00 Aligned_cols=14 Identities=7% Similarity=0.060 Sum_probs=10.8
Q ss_pred CCHHHHHHHHhcCC
Q psy4109 3 KNAFYTNVARDREV 16 (77)
Q Consensus 3 iS~~ML~~A~~r~~ 16 (77)
++|..++..++.+.
T Consensus 44 ~~~~a~~~l~e~Gi 57 (133)
T PRK13530 44 VNPNAIKAMKEVGI 57 (133)
T ss_pred CCHHHHHHHHHcCC
Confidence 57788888888874
No 190
>PRK00536 speE spermidine synthase; Provisional
Probab=71.08 E-value=9.1 Score=27.42 Aligned_cols=54 Identities=9% Similarity=-0.051 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHhcCC---------CCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV---------EGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFA 71 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~---------~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~ 71 (77)
+||.+++++.|++-.+ ..+++. .+ . .-..++||+|+.=+.+ + +.||+.+++
T Consensus 100 VeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~-~--~~~~~~fDVIIvDs~~----~------------~~fy~~~~~ 159 (262)
T PRK00536 100 VQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL-L--DLDIKKYDLIICLQEP----D------------IHKIDGLKR 159 (262)
T ss_pred EECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh-h--hccCCcCCEEEEcCCC----C------------hHHHHHHHH
Confidence 5899999999998543 223332 11 1 1124789999987542 1 357777777
Q ss_pred HHh
Q psy4109 72 CLW 74 (77)
Q Consensus 72 ~L~ 74 (77)
+|+
T Consensus 160 ~L~ 162 (262)
T PRK00536 160 MLK 162 (262)
T ss_pred hcC
Confidence 775
No 191
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.18 E-value=1.5 Score=30.14 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=29.6
Q ss_pred ccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 23 SDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 23 ~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+++....+|.++|.|+|.+.-++.++. .+....+++.-|+.|+
T Consensus 35 c~As~e~~F~dns~d~iyaeHvlEHlt---------~~Eg~~alkechr~Lr 77 (185)
T COG4627 35 CRASNESMFEDNSVDAIYAEHVLEHLT---------YDEGTSALKECHRFLR 77 (185)
T ss_pred hhhhhhccCCCcchHHHHHHHHHHHHh---------HHHHHHHHHHHHHHhC
Confidence 455567899999999999998887763 2334445555555443
No 192
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=66.48 E-value=1.3 Score=30.41 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhcC------CCCcEEEccCCCCCCC-----CCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE------VEGDLVLSDLGQGVPF-----RAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------~~~~~~~~D~~~~lPf-----~~~sFD~v~s~~ 43 (77)
+|+++++.+.|++.. ...+++.||+.+-+|- ..+.||.||--.
T Consensus 76 iE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 76 IEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp EESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES
T ss_pred ecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcc
Confidence 578999999998653 1357898987544441 146899998653
No 193
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=66.44 E-value=29 Score=21.56 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred CCHHHHHHHHhcCCCCcEEEccCCCCC-CCCCCceeeeeecc---------------chhh-hcccCCCCCChHHHHHHH
Q psy4109 3 KNAFYTNVARDREVEGDLVLSDLGQGV-PFRAGAFDGAISIS---------------ALQW-LCNADKTSHNPAKRLYKF 65 (77)
Q Consensus 3 iS~~ML~~A~~r~~~~~~~~~D~~~~l-Pf~~~sFD~v~s~~---------------~l~w-~~d~~~~~~~p~~~l~~~ 65 (77)
++|..++..++.|....-.. ...+ ++....||.|+.+- ..+| ++||.+ ...+..++.
T Consensus 41 ~~p~a~~~l~e~Gid~~~~~---s~~l~~~~~~~~D~iitm~~~~~~~p~~~~~~~~~~~w~i~DP~~---~~~~~f~~~ 114 (126)
T TIGR02689 41 VHPTAIEVMSEIGIDISGQT---SKPLENFHPEDYDVVISLCGCGVNLPEAWVTREIFEDWQLEDPDG---QSIEVFRRV 114 (126)
T ss_pred CCHHHHHHHHHhCCCcccCc---cccCChhHhcCCCEEEEeCCCcccCCCccCCCceeecCCCCCCCC---CcHHHHHHH
Confidence 67888888888874311000 0111 11234577777551 1355 445532 236666777
Q ss_pred HHHHHHHHhhc
Q psy4109 66 FSSLFACLWSL 76 (77)
Q Consensus 66 ~~~l~~~L~~~ 76 (77)
+..|.+++..|
T Consensus 115 ~~~I~~~v~~l 125 (126)
T TIGR02689 115 RDEIKERVVNL 125 (126)
T ss_pred HHHHHHHHHHh
Confidence 77777666554
No 194
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=63.36 E-value=14 Score=26.81 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHhcC----CCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109 1 MKKNAFYTNVARDRE----VEGDLVLSDLGQGVPFRAGAFDGAISISA 44 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~~~~~~~D~~~~lPf~~~sFD~v~s~~~ 44 (77)
+|+.|..++.|++|. ...++..... . ....+.||.|++|-.
T Consensus 190 ~DiDp~Av~~a~~N~~~N~~~~~~~v~~~-~--~~~~~~~dlvvANI~ 234 (295)
T PF06325_consen 190 IDIDPLAVEAARENAELNGVEDRIEVSLS-E--DLVEGKFDLVVANIL 234 (295)
T ss_dssp EESSCHHHHHHHHHHHHTT-TTCEEESCT-S--CTCCS-EEEEEEES-
T ss_pred ecCCHHHHHHHHHHHHHcCCCeeEEEEEe-c--ccccccCCEEEECCC
Confidence 589999999998774 2234433322 2 223599999999964
No 195
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=61.28 E-value=20 Score=25.04 Aligned_cols=44 Identities=7% Similarity=-0.068 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHhcCCCCc-EEEccCC----CCCCCCCCceeeeeeccc
Q psy4109 1 MKKNAFYTNVARDREVEGD-LVLSDLG----QGVPFRAGAFDGAISISA 44 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~-~~~~D~~----~~lPf~~~sFD~v~s~~~ 44 (77)
+|+|++||....+..+... +-..|+. +.++..-..||.+|.+.+
T Consensus 104 vD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 104 VDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred EeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 6999999986333332211 1122321 122223347898887753
No 196
>KOG2904|consensus
Probab=61.07 E-value=10 Score=28.19 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHhcCC----C--CcE----EEccCCCCCCCCCCceeeeeeccchhhhcc
Q psy4109 1 MKKNAFYTNVARDREV----E--GDL----VLSDLGQGVPFRAGAFDGAISISALQWLCN 50 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~----~--~~~----~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d 50 (77)
+|.|+.-+..|.+|.. . ..+ +.+|...+.|...+.+|.++||- =|+.+
T Consensus 178 iD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNP--PYI~~ 235 (328)
T KOG2904|consen 178 IDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNP--PYIRK 235 (328)
T ss_pred EeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCC--Ccccc
Confidence 5899999999988741 1 223 35676566777899999999997 34443
No 197
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=59.30 E-value=12 Score=26.14 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=31.9
Q ss_pred EEEccCCCC-CCC------CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 20 LVLSDLGQG-VPF------RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 20 ~~~~D~~~~-lPf------~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
-+..|+... .|. ..++||+|+|+-++|-. |-+.-+.+|+..-+.|+.
T Consensus 80 P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~---------p~~~~~~lf~~a~~~L~~ 133 (204)
T PF06080_consen 80 PLALDVSAPPWPWELPAPLSPESFDAIFCINMLHIS---------PWSAVEGLFAGAARLLKP 133 (204)
T ss_pred CeEeecCCCCCccccccccCCCCcceeeehhHHHhc---------CHHHHHHHHHHHHHhCCC
Confidence 355676543 333 36799999999999854 345556788888777753
No 198
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=59.26 E-value=36 Score=25.36 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=45.0
Q ss_pred CCCHHHHHHHH----hcCC-C-CcEEEccCCCC--CCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 2 KKNAFYTNVAR----DREV-E-GDLVLSDLGQG--VPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 2 DiS~~ML~~A~----~r~~-~-~~~~~~D~~~~--lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
|.|+.-++..+ +|+. . +++.++|+-.. +.--+-..+.++.++.+..+.|- +.+++.+++|++++
T Consensus 168 Dys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn--------~lv~~sl~gl~~al 239 (311)
T PF12147_consen 168 DYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDN--------DLVRRSLAGLARAL 239 (311)
T ss_pred eCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcH--------HHHHHHHHHHHHHh
Confidence 77887777665 4443 2 38899986432 22124457899999999998763 45677888888877
Q ss_pred hh
Q psy4109 74 WS 75 (77)
Q Consensus 74 ~~ 75 (77)
..
T Consensus 240 ~p 241 (311)
T PF12147_consen 240 EP 241 (311)
T ss_pred CC
Confidence 53
No 199
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.08 E-value=12 Score=24.37 Aligned_cols=31 Identities=35% Similarity=0.450 Sum_probs=26.4
Q ss_pred hhhcccCCCCCChHHHHHHHHHHHHHHHhhc
Q psy4109 46 QWLCNADKTSHNPAKRLYKFFSSLFACLWSL 76 (77)
Q Consensus 46 ~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~~ 76 (77)
+|+.||--.+|-|.+-|++.-+.+++.|..|
T Consensus 51 ~WLqdP~ItshMPreML~dv~~~~~~il~~l 81 (126)
T PF09921_consen 51 QWLQDPMITSHMPREMLEDVWETLREILEQL 81 (126)
T ss_pred HHHcCchhHhcCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999888888776543
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=57.88 E-value=2.6 Score=31.05 Aligned_cols=27 Identities=4% Similarity=-0.048 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHhcC----C-CCcEEEccCCC
Q psy4109 1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQ 27 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~ 27 (77)
+|+|+.|++.|+++. . +.+++++|+.+
T Consensus 234 vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 234 TEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred EECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 589999999998773 2 35789999743
No 201
>KOG3178|consensus
Probab=57.28 E-value=31 Score=25.95 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=34.1
Q ss_pred CCCcEEEccCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 16 VEGDLVLSDLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 16 ~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+.++-+-||+-+.+|-.+ +|+--.++|.|.| +.+.++|++.++.|..
T Consensus 221 ~gV~~v~gdmfq~~P~~d----aI~mkWiLhdwtD---------edcvkiLknC~~sL~~ 267 (342)
T KOG3178|consen 221 PGVEHVAGDMFQDTPKGD----AIWMKWILHDWTD---------EDCVKILKNCKKSLPP 267 (342)
T ss_pred CCcceecccccccCCCcC----eEEEEeecccCCh---------HHHHHHHHHHHHhCCC
Confidence 446778888877766444 8887777766644 6788899999988753
No 202
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=57.11 E-value=1.6 Score=31.68 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHhcC----C---CCcEEEccCCCCCC--CCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V---EGDLVLSDLGQGVP--FRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~---~~~~~~~D~~~~lP--f~~~sFD~v~s~~ 43 (77)
+|.|...|+.|+++. . ..+++++|+-+-+. -..+.||.||.-.
T Consensus 152 VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 152 VDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp EES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 699999999999883 1 23688888632222 1367999999865
No 203
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=56.72 E-value=60 Score=22.06 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCC-----CCCceeeeeecc-chhhhcccCCCCCChHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPF-----RAGAFDGAISIS-ALQWLCNADKTSHNPAKRLYKFF 66 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf-----~~~sFD~v~s~~-~l~w~~d~~~~~~~p~~~l~~~~ 66 (77)
+|.+++|....-....+...+.+++ +.++. ..+..|+|++.. .+-|+ +-.....+.++|
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~~~~~~~~~~~DaIVnpANs~~~m------gGGvD~AI~~~~ 68 (186)
T cd02900 4 CDTNEEVTNAYLQNSKYVCIVNGGL-ETIEDSVRKLHHGHFDSIVSPANSYGYL------DGGFDLAIRNFF 68 (186)
T ss_pred ecCcHHHHHHHhCCCCCeEEEeCCc-eecchhhcccccCccCEEEeCCCcccCC------CCcHHHHHHHHc
Confidence 4778888873333334567888887 55664 345689999765 44554 455667777766
No 204
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=54.08 E-value=9.9 Score=22.33 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=21.0
Q ss_pred CCCCCC-ceeeeeeccchhhhcccCCCCCChHHHHHHHHHH
Q psy4109 29 VPFRAG-AFDGAISISALQWLCNADKTSHNPAKRLYKFFSS 68 (77)
Q Consensus 29 lPf~~~-sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~ 68 (77)
+|-.=. ..-+++..+++. +|+|.+.+++++++
T Consensus 19 VP~~l~SCHTa~v~gy~iE--------GHVPa~~I~~lL~e 51 (70)
T PF04214_consen 19 VPPELASCHTAVVGGYVIE--------GHVPADDIKRLLAE 51 (70)
T ss_pred CCchhccccEEEECCEEEE--------ccCCHHHHHHHHhc
Confidence 443333 344555555553 89999999999874
No 205
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=53.91 E-value=49 Score=21.28 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=22.1
Q ss_pred CCHHHHHHHHhcCCCCcEEEccCCCCCC-CCCCceeeeeecc
Q psy4109 3 KNAFYTNVARDREVEGDLVLSDLGQGVP-FRAGAFDGAISIS 43 (77)
Q Consensus 3 iS~~ML~~A~~r~~~~~~~~~D~~~~lP-f~~~sFD~v~s~~ 43 (77)
+++.+++.+++.+....-... .++. +....||.|+++-
T Consensus 46 ~~~~a~~vl~e~Gid~~~~~~---k~i~~~~~~~~DlIitmd 84 (139)
T COG0394 46 PDPRAVEVLAEHGIDISGHRS---KQLTEEDFDEFDLIITMD 84 (139)
T ss_pred CCHHHHHHHHHcCCCcCCccC---ccCchhhhhhCCEEEEeC
Confidence 678899999988743221111 1111 2235688888775
No 206
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=52.90 E-value=51 Score=24.40 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=39.4
Q ss_pred CHHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhh---------hcccCCCCCChHHHHHHHHHHH
Q psy4109 4 NAFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQW---------LCNADKTSHNPAKRLYKFFSSL 69 (77)
Q Consensus 4 S~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w---------~~d~~~~~~~p~~~l~~~~~~l 69 (77)
.+..++.|++++ .+++..|...++. .-+.||+|+--.+=+. .+.++-..=+|++.+..+..++
T Consensus 38 ~~~l~~~~~~~G--i~~v~Id~~~pl~-~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vidp~~ai~~~~dR~ 109 (328)
T PLN02941 38 QPSLEALARSKG--IDLVAIDPSRPLS-EQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQ 109 (328)
T ss_pred hHHHHHHHHHCC--CeEEEecCCCCcc-ccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEECCHHHHHHHHHHH
Confidence 466788898887 5677778754333 3468999987654333 2334444445666666655543
No 207
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=52.53 E-value=2.3 Score=32.24 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHhcCC-------CCcEEEccCCCCCCC---CCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDREV-------EGDLVLSDLGQGVPF---RAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-------~~~~~~~D~~~~lPf---~~~sFD~v~s~~ 43 (77)
+|+|..-|+.|++|.. ...++++|+=+-+.- +...||+||.-.
T Consensus 246 VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDP 298 (393)
T COG1092 246 VDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDP 298 (393)
T ss_pred EeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECC
Confidence 6999999999998841 237899986332221 345999998653
No 208
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=51.15 E-value=28 Score=22.86 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCC-C-CCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHH
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVP-F-RAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFAC 72 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lP-f-~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~ 72 (77)
+||-++-++.+++|.. ..++++..= +.+. + .++.+|+++.| |.||+..++ .....-..-++.|-++
T Consensus 5 FDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH-e~l~~~i~~~~v~~~iFN--LGYLPggDk---~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 5 FDIQEEAIENTRERLEEAGLEDRVTLILDSH-ENLDEYIPEGPVDAAIFN--LGYLPGGDK---SITTKPETTLKALEAA 78 (140)
T ss_dssp EES-HHHHHHHHHHHHHTT-GSGEEEEES-G-GGGGGT--S--EEEEEEE--ESB-CTS-T---TSB--HHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhcCCCCcEEEEECCH-HHHHhhCccCCcCEEEEE--CCcCCCCCC---CCCcCcHHHHHHHHHH
Confidence 4888999999988752 245665542 3343 1 23589999999 589987654 3344444455555555
Q ss_pred Hhh
Q psy4109 73 LWS 75 (77)
Q Consensus 73 L~~ 75 (77)
|.-
T Consensus 79 l~l 81 (140)
T PF06962_consen 79 LEL 81 (140)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 209
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=50.52 E-value=14 Score=25.94 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=38.1
Q ss_pred HHHHHHhcCC-CCcEEEccCCCCCC--CCCCceeeeeeccchhhhcccCCCCCChHHHHH-HHHHHHHHHHh
Q psy4109 7 YTNVARDREV-EGDLVLSDLGQGVP--FRAGAFDGAISISALQWLCNADKTSHNPAKRLY-KFFSSLFACLW 74 (77)
Q Consensus 7 ML~~A~~r~~-~~~~~~~D~~~~lP--f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~-~~~~~l~~~L~ 74 (77)
+++.+.+.+. +..++++|+.+-++ +.+++.|.|+-++-==| .++-|.=++-++ .|++.+.+.|+
T Consensus 88 ~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPW----pKkRH~KRRl~~~~fl~~~a~~Lk 155 (227)
T COG0220 88 ALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPW----PKKRHHKRRLTQPEFLKLYARKLK 155 (227)
T ss_pred HHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCC----CCccccccccCCHHHHHHHHHHcc
Confidence 4555666667 88999999865555 35669999988753233 334444444443 34445544443
No 210
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=50.15 E-value=22 Score=16.33 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHh
Q psy4109 60 KRLYKFFSSLFACLW 74 (77)
Q Consensus 60 ~~l~~~~~~l~~~L~ 74 (77)
..|++-|+.||++.+
T Consensus 3 ntlkkv~qglhe~ik 17 (23)
T PF08225_consen 3 NTLKKVFQGLHEVIK 17 (23)
T ss_pred hHHHHHHHHHHHHHH
Confidence 468899999999865
No 211
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=46.96 E-value=58 Score=23.99 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHhcC----CC--CcEEEccCCCCCCCCC-Cceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----VE--GDLVLSDLGQGVPFRA-GAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~--~~~~~~D~~~~lPf~~-~sFD~v~s~~ 43 (77)
+|+.|--++.|++|. +. ...-..+ .+.+.. +.||+|++|-
T Consensus 191 ~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~---~~~~~~~~~~DvIVANI 237 (300)
T COG2264 191 VDIDPQAVEAARENARLNGVELLVQAKGFL---LLEVPENGPFDVIVANI 237 (300)
T ss_pred ecCCHHHHHHHHHHHHHcCCchhhhccccc---chhhcccCcccEEEehh
Confidence 588888888888763 22 1122222 233344 6999999994
No 212
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=45.26 E-value=30 Score=26.75 Aligned_cols=43 Identities=14% Similarity=-0.035 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCC-CCCCceeeee----eccc
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVP-FRAGAFDGAI----SISA 44 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lP-f~~~sFD~v~----s~~~ 44 (77)
.|+|+.-++..+++. .++.+...|.. .++ ..++.||.|+ |++.
T Consensus 144 ~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~-~~~~~~~~~fD~ILvDaPCSG~ 196 (470)
T PRK11933 144 NEYSASRVKVLHANISRCGVSNVALTHFDGR-VFGAALPETFDAILLDAPCSGE 196 (470)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEEeCchh-hhhhhchhhcCeEEEcCCCCCC
Confidence 488888888887663 23456777853 342 4467899998 6653
No 213
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=44.64 E-value=24 Score=27.53 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHhcC------------CCCcEEEccCCCCCCCCCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE------------VEGDLVLSDLGQGVPFRAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~------------~~~~~~~~D~~~~lPf~~~sFD~v~s~ 42 (77)
+|+.|+|++.++++. +...++.-|+.+=+--..+.||.||--
T Consensus 319 VdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVD 372 (508)
T COG4262 319 VDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVD 372 (508)
T ss_pred EecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEe
Confidence 589999999998552 122445555422222234567777654
No 214
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=44.07 E-value=71 Score=23.69 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=39.0
Q ss_pred cCCCCCCCCCCceeeeeeccchhh-hcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 24 DLGQGVPFRAGAFDGAISISALQW-LCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 24 D~~~~lPf~~~sFD~v~s~~~l~w-~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+| .++--.+.+.|.+-|.+|=|| |+.--+.+..-...||.....+|++.+.
T Consensus 95 hM-~AlRpDeD~ld~~HSvYVDQWDWEkvi~~g~rNl~yLK~tV~kIY~~ir~ 146 (330)
T COG2502 95 HM-KALRPDEDRLDPIHSVYVDQWDWEKVIPDGDRNLAYLKSTVEKIYAAIRE 146 (330)
T ss_pred ec-hhcCCCcccccchheEEecccchhhhcCCccccHHHHHHHHHHHHHHHHH
Confidence 44 334335667999999999999 6665566667778899999999998763
No 215
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=40.40 E-value=12 Score=28.07 Aligned_cols=42 Identities=10% Similarity=-0.028 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|++++.++.++++. . ..+++++|+.+-++ ..+.||.|+...
T Consensus 87 ~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~-~~~~fD~V~lDP 133 (382)
T PRK04338 87 NDINPDAVELIKKNLELNGLENEKVFNKDANALLH-EERKFDVVDIDP 133 (382)
T ss_pred EeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh-hcCCCCEEEECC
Confidence 589999999998763 1 23588899743222 156799998763
No 216
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=38.48 E-value=17 Score=27.86 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHhcC-----CCCcEEEccCCCCCCCCC---Cceeeeee
Q psy4109 1 MKKNAFYTNVARDRE-----VEGDLVLSDLGQGVPFRA---GAFDGAIS 41 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-----~~~~~~~~D~~~~lPf~~---~sFD~v~s 41 (77)
+++++++++.|+++. .+..+..+|+ +.++-.. ..||.|+-
T Consensus 321 vEi~~~aV~~A~~NA~~n~i~N~~f~~~~a-e~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 321 VEISPEAVEAAQENAAANGIDNVEFIAGDA-EEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred EecCHHHHHHHHHHHHHcCCCcEEEEeCCH-HHHhhhccccCCCCEEEE
Confidence 579999999998763 2467888886 5454332 47788764
No 217
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=37.68 E-value=36 Score=23.94 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHhcC----CC---CcEEEccCCCCCCCC-CCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----VE---GDLVLSDLGQGVPFR-AGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~~---~~~~~~D~~~~lPf~-~~sFD~v~s~~ 43 (77)
+|+++.+...|+.+. .. .....+|.-....+. ...||.|+++.
T Consensus 83 ~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NP 133 (311)
T PF02384_consen 83 IEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNP 133 (311)
T ss_dssp EES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--EEEEEEE-
T ss_pred ecCcHHHHHHHHhhhhhhccccccccccccccccccccccccccccccCCC
Confidence 478899998887653 11 247788864333333 68899999997
No 218
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.55 E-value=24 Score=25.04 Aligned_cols=37 Identities=30% Similarity=0.209 Sum_probs=26.9
Q ss_pred CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhhc
Q psy4109 31 FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWSL 76 (77)
Q Consensus 31 f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~~ 76 (77)
-..-+||.+.....| +--+++||+.++..+|..|.+.
T Consensus 202 ~~~ltf~ea~~~~~f---------~im~rqRl~~~~~~~~~ql~~~ 238 (241)
T PRK13886 202 QDRLTFDEALADSSL---------TIMTRQRLKIVKDQLFAQLDNA 238 (241)
T ss_pred HcCCCHHHHhcCCCC---------ChHHHHHHHHHHHHHHHHHHHh
Confidence 345566666654433 5568999999999999999764
No 219
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=32.95 E-value=10 Score=27.92 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 7 YTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 7 ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
++..|++++ ..++..|...++.- -|.||+|+--.
T Consensus 27 ~~~~~~~~g--i~~v~id~~~pl~~-QgpfDvIlHKl 60 (307)
T PF05770_consen 27 FIDLARSRG--IDFVPIDLSKPLEE-QGPFDVILHKL 60 (307)
T ss_dssp HCCCCCCCT--TEEEEEECCSSSGC-C--SCEEEE--
T ss_pred HHHHHHhcC--CEEEEcCCCCCccc-CCCcEEEEEeC
Confidence 344455554 67999998554442 36799998654
No 220
>KOG1709|consensus
Probab=32.55 E-value=56 Score=23.72 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHhcCCC----CcEEEc---cCCCCCCCCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 2 KKNAFYTNVARDREVE----GDLVLS---DLGQGVPFRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 2 DiS~~ML~~A~~r~~~----~~~~~~---D~~~~lPf~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
...|+.++.-|..+.. +-.+.| |.... ..|++||+|+--- + ..-.+.++.|++.+.+-|+
T Consensus 131 E~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~--L~d~~FDGI~yDT-y----------~e~yEdl~~~hqh~~rLLk 197 (271)
T KOG1709|consen 131 EAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT--LPDKHFDGIYYDT-Y----------SELYEDLRHFHQHVVRLLK 197 (271)
T ss_pred ecCHHHHHHHHhcccccccceEEEecchHhhhcc--ccccCcceeEeec-h----------hhHHHHHHHHHHHHhhhcC
Confidence 3467788887777642 222222 44333 4688999998652 1 2345778888887766554
No 221
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=32.50 E-value=10 Score=27.41 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHhcC---CC--CcEEEccCCCCCCCC-----CCcee-----eeeeccchhhhccc
Q psy4109 1 MKKNAFYTNVARDRE---VE--GDLVLSDLGQGVPFR-----AGAFD-----GAISISALQWLCNA 51 (77)
Q Consensus 1 iDiS~~ML~~A~~r~---~~--~~~~~~D~~~~lPf~-----~~sFD-----~v~s~~~l~w~~d~ 51 (77)
+|..|-.++.+|.-. +. ..++++|+.++-.+- .+.+| +++.++++||+.|.
T Consensus 101 VD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~ 166 (267)
T PF04672_consen 101 VDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDD 166 (267)
T ss_dssp EESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CG
T ss_pred ECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCc
Confidence 366666666666542 33 468999986421121 24455 78888899999774
No 222
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=32.49 E-value=67 Score=18.89 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=23.7
Q ss_pred HHHhcCCCCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 10 VARDREVEGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 10 ~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
.+++++..++..++|+++ .+-.-..+|.++++.
T Consensus 10 ~L~e~Gi~~~ve~~diss-~~~~~~~aDiiVtt~ 42 (85)
T PRK10222 10 FLTQSNIDHTVNSCAVGE-YKSELSGADIIIAST 42 (85)
T ss_pred HHHHcCCCeEEEEeehhh-cccCCCCCCEEEECc
Confidence 456777777899999965 543333569999984
No 223
>PRK11797 D-ribose pyranase; Provisional
Probab=30.93 E-value=1.4e+02 Score=19.43 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=24.3
Q ss_pred CCHHHHHHHHhcCCCCcEEEccCCCCCCCCCC--ceeeeeec
Q psy4109 3 KNAFYTNVARDREVEGDLVLSDLGQGVPFRAG--AFDGAISI 42 (77)
Q Consensus 3 iS~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~--sFD~v~s~ 42 (77)
+|++++..-.+=|-.-.++.+|++ +|..++ ..|.....
T Consensus 7 Lnp~Ll~~La~mGHgD~ivI~Dag--~P~~~~~~~idla~~~ 46 (139)
T PRK11797 7 LNSEISSVIARLGHTDTLVICDAG--LPIPNGVERIDLALTK 46 (139)
T ss_pred CCHHHHHHHHHcCCCCeEEEcCCC--CCCCCCCceEEeccCC
Confidence 578888887666655678889975 555433 33444433
No 224
>KOG0820|consensus
Probab=29.60 E-value=64 Score=24.06 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHhcCCC------CcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109 2 KKNAFYTNVARDREVE------GDLVLSDLGQGVPFRAGAFDGAISISA 44 (77)
Q Consensus 2 DiS~~ML~~A~~r~~~------~~~~~~D~~~~lPf~~~sFD~v~s~~~ 44 (77)
.+.|.|++.-.+|..+ .++++||.- .. ..-.||.||+|.=
T Consensus 87 E~Dprmvael~krv~gtp~~~kLqV~~gD~l-K~--d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 87 EIDPRMVAELEKRVQGTPKSGKLQVLHGDFL-KT--DLPRFDGCVSNLP 132 (315)
T ss_pred ecCcHHHHHHHHHhcCCCccceeeEEecccc-cC--CCcccceeeccCC
Confidence 4678888888777521 378999963 33 3456999999753
No 225
>PF05555 DUF762: Coxiella burnetii protein of unknown function (DUF762); InterPro: IPR008481 This family consists several of several uncharacterised proteins from the bacterium Coxiella burnetii. C. burnetii is the causative agent of the Q fever disease.
Probab=29.57 E-value=56 Score=23.34 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q psy4109 58 PAKRLYKFFSSLFACLWSL 76 (77)
Q Consensus 58 p~~~l~~~~~~l~~~L~~~ 76 (77)
..++|.+++.+||++|.++
T Consensus 210 i~~~l~e~l~sly~r~~~~ 228 (248)
T PF05555_consen 210 IEQKLKEILNSLYSRLCRI 228 (248)
T ss_pred HHHHHHHHHHHHHHHhhHh
Confidence 4688999999999998775
No 226
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=29.04 E-value=31 Score=25.34 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHhcC----C-CCcEEEccCCC
Q psy4109 1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQ 27 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~ 27 (77)
+|+|++|++.|+++. . +.+++++|+.+
T Consensus 225 vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 225 TEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred EECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 589999999999874 1 35789899743
No 227
>PRK13699 putative methylase; Provisional
Probab=28.03 E-value=59 Score=22.42 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=29.6
Q ss_pred cEEEccCCCCC-CCCCCceeeeeeccch--hhhccc-CC--CCCChHHHHHHHHHHHHHHHhh
Q psy4109 19 DLVLSDLGQGV-PFRAGAFDGAISISAL--QWLCNA-DK--TSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 19 ~~~~~D~~~~l-Pf~~~sFD~v~s~~~l--~w~~d~-~~--~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
++++||..+-+ .++++++|+|+..-=. .+ .+. ++ ....-.+-++.+|++++++|+.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~-~~~~~~~~~~~~~~ew~~~~l~E~~RVLKp 64 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGF-RDRQGRTIAGDKTDEWLQPACNEMYRVLKK 64 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCccccc-ccCCCcccccccHHHHHHHHHHHHHHHcCC
Confidence 45667754322 3578888888877311 10 010 00 0111224456788888888863
No 228
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=27.88 E-value=53 Score=22.48 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=33.5
Q ss_pred ceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHhhcC
Q psy4109 35 AFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLWSLH 77 (77)
Q Consensus 35 sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~~~~ 77 (77)
+||-.+|..+++=+ |.++.+..-++.|+.+-+.+...|+..|
T Consensus 46 ~fDe~~S~~ll~~~-D~~~dg~~~~~el~~l~~~~~~~l~~~~ 87 (212)
T PF06226_consen 46 TFDEFFSAYLLEGL-DKDGDGKLDPEELAALAKEIFDNLKEYN 87 (212)
T ss_pred EeCchhHHHHHHhh-hhcccCCCCHHHHHHHHHHHHhhhhhcC
Confidence 59999999988744 5666777788999999999988887643
No 229
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=26.87 E-value=1.1e+02 Score=16.93 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHHHHhhc
Q psy4109 56 HNPAKRLYKFFSSLFACLWSL 76 (77)
Q Consensus 56 ~~p~~~l~~~~~~l~~~L~~~ 76 (77)
+.|...|...+.++.+.|..+
T Consensus 1 pnpr~~L~~lY~~~L~~L~~~ 21 (57)
T PF04716_consen 1 PNPREALISLYNKTLKALKKI 21 (57)
T ss_pred CChHHHHHHHHHHHHHHHHhC
Confidence 468899999999999888753
No 230
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=26.82 E-value=35 Score=23.43 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCc-eeeeeecc
Q psy4109 1 MKKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGA-FDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~s-FD~v~s~~ 43 (77)
+||+++-|+.|+++.. ..++..+|--+ ++.++. .|.|+-.+
T Consensus 27 ~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~--~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 27 VDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE--VLKPGEDVDTIVIAG 74 (205)
T ss_dssp EESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG--G--GGG---EEEEEE
T ss_pred EeCCHHHHHHHHHHHHHcCCcccEEEEECCccc--ccCCCCCCCEEEEec
Confidence 4999999999997741 24788888323 345554 67776554
No 231
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.63 E-value=97 Score=17.51 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=19.7
Q ss_pred hhcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 47 WLCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 47 w~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
|+.|++.. ..+++++++.-+.|.++|+.
T Consensus 46 ~V~d~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 46 FITDAREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence 44566544 45667888888899888864
No 232
>PF08527 PAD_M: Protein-arginine deiminase (PAD) middle domain; InterPro: IPR013733 This entry represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold. ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0018101 peptidyl-citrulline biosynthetic process from peptidyl-arginine, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=26.40 E-value=23 Score=23.87 Aligned_cols=18 Identities=44% Similarity=0.759 Sum_probs=12.6
Q ss_pred CCCCCCCCceeeeeeccc
Q psy4109 27 QGVPFRAGAFDGAISISA 44 (77)
Q Consensus 27 ~~lPf~~~sFD~v~s~~~ 44 (77)
|+|-|+|..|++.||..+
T Consensus 138 EgL~FPDa~FsGLIS~~v 155 (159)
T PF08527_consen 138 EGLEFPDADFSGLISISV 155 (159)
T ss_dssp EESS--BTTB-SEEEEEE
T ss_pred EEcccCCCCCCeeEEEEE
Confidence 568899999999999864
No 233
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=26.39 E-value=78 Score=23.88 Aligned_cols=54 Identities=15% Similarity=0.245 Sum_probs=38.4
Q ss_pred HhcCCCCcEEEccCCCCCC-CCCCceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 12 RDREVEGDLVLSDLGQGVP-FRAGAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 12 ~~r~~~~~~~~~D~~~~lP-f~~~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
+++....+++.+++.+-+- ..+++||.++-+=.+.|+.+ +.+.+..+.|.++++
T Consensus 271 r~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~---------~~~~~~~~~l~~~~~ 325 (380)
T PF11899_consen 271 RARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP---------EQLNEEWQELARTAR 325 (380)
T ss_pred hcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH---------HHHHHHHHHHHHHhC
Confidence 3444445777777754332 35899999999999999954 667777777777664
No 234
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=26.05 E-value=93 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccc
Q psy4109 10 VARDREVEGDLVLSDLGQGVPFRAGAFDGAISISA 44 (77)
Q Consensus 10 ~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~ 44 (77)
+|+.|+..+++...+..+ +|.+.++|.+|-.+.
T Consensus 29 ra~~rgi~v~i~~vsl~d--~~~~~~~Dl~~~GGg 61 (250)
T COG3442 29 RAEKRGIKVEIVEVSLTD--TFPDDSYDLYFLGGG 61 (250)
T ss_pred HHHhcCCceEEEEeecCC--CCCcccccEEEecCc
Confidence 477888777777777655 556689999998875
No 235
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=24.79 E-value=44 Score=24.09 Aligned_cols=36 Identities=14% Similarity=0.053 Sum_probs=20.5
Q ss_pred eeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 36 FDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 36 FD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
.|.|+.-.=..-+.+|+ +..+..-...||.+|+..|
T Consensus 169 ~diViTDlPYG~~t~W~--g~~~~~p~~~ml~~l~~vL 204 (246)
T PF11599_consen 169 PDIVITDLPYGEMTSWQ--GEGSGGPVAQMLNSLAPVL 204 (246)
T ss_dssp -SEEEEE--CCCSSSTT--S---HHHHHHHHHHHHCCS
T ss_pred CCEEEecCCCccccccc--CCCCCCcHHHHHHHHHhhC
Confidence 47777765433344444 3356677888999998776
No 236
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=24.65 E-value=21 Score=26.81 Aligned_cols=43 Identities=12% Similarity=0.015 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHhcC----C-CCcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V-EGDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~-~~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|++++-++.+++|. . ..+++++|+..-+.-....||.|+--.
T Consensus 75 nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 75 NDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred EeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 489999999988764 1 246888887543332345688886653
No 237
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=24.29 E-value=60 Score=22.22 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHhc----CCC--CcEEEccCCCCCCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDR----EVE--GDLVLSDLGQGVPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r----~~~--~~~~~~D~~~~lPf~~~sFD~v~s~~ 43 (77)
+|++|.-.+..+++ ... ...+++|..+ ++- .+.||-|+.+.
T Consensus 131 ~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~-~~~-~~~~drvim~l 177 (200)
T PF02475_consen 131 VDLNPDAVEYLKENIRLNKVENRIEVINGDARE-FLP-EGKFDRVIMNL 177 (200)
T ss_dssp EES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--
T ss_pred ecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHH-hcC-ccccCEEEECC
Confidence 36777766665544 222 3678999754 443 89999999885
No 238
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=23.86 E-value=1.4e+02 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHhcCC------CCcEEEccCCCCCCCCCCceeeeeec
Q psy4109 2 KKNAFYTNVARDREV------EGDLVLSDLGQGVPFRAGAFDGAISI 42 (77)
Q Consensus 2 DiS~~ML~~A~~r~~------~~~~~~~D~~~~lPf~~~sFD~v~s~ 42 (77)
|+-+++++.|++|.. +..+..+|+.+ . ..+..||+||-=
T Consensus 126 E~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~-~-~~~~~vDav~LD 170 (256)
T COG2519 126 EIREDFAKTARENLSEFGLGDRVTLKLGDVRE-G-IDEEDVDAVFLD 170 (256)
T ss_pred EecHHHHHHHHHHHHHhccccceEEEeccccc-c-ccccccCEEEEc
Confidence 456788999998852 25677789865 2 244489999876
No 239
>PF07084 Spot_14: Thyroid hormone-inducible hepatic protein Spot 14; InterPro: IPR009786 The Spot 14 family includes thyroid hormone-inducible hepatic protein (Spot 14), Mid1-interacting protein and related sequneces. Mainly expressed in tissues that synthesise triglycerides, the mRNA coding for Spot 14 has been shown to be increased in rat liver by insulin, dietary carbohydrates, glucose in hepatocyte culture medium, as well as thyroid hormone. In contrast, dietary fats and polyunsaturated fatty acids, have been shown to decrease the amount of Spot 14 mRNA, while an elevated level of cAMP acts as a dominant negative factor. In addition, liver-specific factors or chromatin organisation of the gene have been shown to contribute to the regulation of its expression []. Spot 14 protein is thought to be required for induction of hepatic lipogenesis []. Mid1-interacting protein is involved in stabilisation of microtubules [].; PDB: 3ONT_A.
Probab=23.59 E-value=1e+02 Score=20.61 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=17.4
Q ss_pred CChHHHHHHHHHHHHHHHhhc
Q psy4109 56 HNPAKRLYKFFSSLFACLWSL 76 (77)
Q Consensus 56 ~~p~~~l~~~~~~l~~~L~~~ 76 (77)
..+.+..+..|++||.+|..|
T Consensus 118 ~dLe~qF~~HL~GL~~vL~~L 138 (160)
T PF07084_consen 118 TDLEAQFHYHLSGLHQVLSKL 138 (160)
T ss_dssp HTHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999865
No 240
>PTZ00213 asparagine synthetase A; Provisional
Probab=23.47 E-value=2.7e+02 Score=21.17 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=41.0
Q ss_pred CcEEEccCCCCCCCCCCceeeeeeccchhh-hcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 18 GDLVLSDLGQGVPFRAGAFDGAISISALQW-LCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 18 ~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w-~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
++=+-.|| .++ .+|...|-+-|.+|=|| |+.--.....-.+.|+....+||++++.
T Consensus 92 geGlytdM-nAi-R~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~ 148 (348)
T PTZ00213 92 GEGIYTDM-NAL-RVEEELDNIHSVYVDQWDWEMVIAPADRNLEYLKNTVRRLYAAIRK 148 (348)
T ss_pred Cceeeecc-ccc-cCCcccCccceeEeccccHHHhcCccccCHHHHHHHHHHHHHHHHH
Confidence 34344577 344 35777999999999999 6655555666677888888899998864
No 241
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=23.25 E-value=57 Score=21.70 Aligned_cols=14 Identities=14% Similarity=0.142 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHhcC
Q psy4109 2 KKNAFYTNVARDRE 15 (77)
Q Consensus 2 DiS~~ML~~A~~r~ 15 (77)
.+|.+||+.||.|.
T Consensus 78 ~Vs~e~l~~arnk~ 91 (146)
T PF06388_consen 78 TVSFEMLDAARNKA 91 (146)
T ss_pred ccCHHHHHHHHhhh
Confidence 37999999999874
No 242
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=23.10 E-value=64 Score=15.58 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhc
Q psy4109 65 FFSSLFACLWSL 76 (77)
Q Consensus 65 ~~~~l~~~L~~~ 76 (77)
-|++.|++|+++
T Consensus 8 ~f~eFY~rlk~I 19 (28)
T PF12108_consen 8 PFSEFYERLKEI 19 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 577777777653
No 243
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=22.74 E-value=98 Score=21.94 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHhcC----C--CCcEEEccCCC-CCCC-CCCceeeeeecc
Q psy4109 2 KKNAFYTNVARDRE----V--EGDLVLSDLGQ-GVPF-RAGAFDGAISIS 43 (77)
Q Consensus 2 DiS~~ML~~A~~r~----~--~~~~~~~D~~~-~lPf-~~~sFD~v~s~~ 43 (77)
|+.++..+.|+++. . +..+.+.|+.+ .++- .++.||+||-=.
T Consensus 72 E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDl 121 (247)
T PF08704_consen 72 EFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDL 121 (247)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEES
T ss_pred ccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeC
Confidence 67888999998774 1 35788899842 2321 247899998764
No 244
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=22.68 E-value=2.9e+02 Score=20.83 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=39.3
Q ss_pred CcEEEccCCCCCCCCCCc-eeeeeeccchhh-hcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 18 GDLVLSDLGQGVPFRAGA-FDGAISISALQW-LCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 18 ~~~~~~D~~~~lPf~~~s-FD~v~s~~~l~w-~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
++=+-.|| .++- +|.. .|-.-|.+|=|| |+.--.....-...|+....+||++++.
T Consensus 89 geGlytdM-nAiR-~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~Iy~~ik~ 146 (330)
T TIGR00669 89 GEGLFVHM-KALR-PDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEAIYAAIRA 146 (330)
T ss_pred Cceeeecc-cccc-CCccccCccceeeeccccHHHhcCcccccHHHHHHHHHHHHHHHHH
Confidence 34344577 3453 3444 799999999999 6654445566677888888899998864
No 245
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.51 E-value=94 Score=20.63 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=21.6
Q ss_pred hhhcccCCCCCChHHHHHHHHHHHHHHH
Q psy4109 46 QWLCNADKTSHNPAKRLYKFFSSLFACL 73 (77)
Q Consensus 46 ~w~~d~~~~~~~p~~~l~~~~~~l~~~L 73 (77)
+|+.||--.++-|++-|+..-+.+.+.+
T Consensus 69 ~WLqdP~v~s~mPremL~dv~~t~~e~~ 96 (151)
T COG4755 69 SWLQDPVVTSVMPREMLRDVESTLREVA 96 (151)
T ss_pred HHHhCchHhhhCcHHHHHHHHHHHHHHH
Confidence 6899988889999888877766555544
No 246
>KOG2730|consensus
Probab=21.67 E-value=66 Score=23.37 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHhcC-C-----CCcEEEccCCC---CCCCCCCceeeeeec
Q psy4109 1 MKKNAFYTNVARDRE-V-----EGDLVLSDLGQ---GVPFRAGAFDGAISI 42 (77)
Q Consensus 1 iDiS~~ML~~A~~r~-~-----~~~~~~~D~~~---~lPf~~~sFD~v~s~ 42 (77)
+||+|.=++.|+++. . +..+++||.-. .+-|...-+|.++-+
T Consensus 122 IdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 122 IDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred EeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 589999999999885 2 34899998632 223333334455544
No 247
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.64 E-value=68 Score=19.62 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCCCCCCCCceeeeeeccchhhh
Q psy4109 5 AFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDGAISISALQWL 48 (77)
Q Consensus 5 ~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~v~s~~~l~w~ 48 (77)
..|-+.|++++...++.....+ .++-.-..+|+++...=+-|.
T Consensus 18 ~km~~~a~~~gi~~~i~a~~~~-e~~~~~~~~Dvill~PQv~~~ 60 (99)
T cd05565 18 NALNKGAKERGVPLEAAAGAYG-SHYDMIPDYDLVILAPQMASY 60 (99)
T ss_pred HHHHHHHHHCCCcEEEEEeeHH-HHHHhccCCCEEEEcChHHHH
Confidence 4567778888877777777764 466566679999988766553
No 248
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=21.27 E-value=3.2e+02 Score=20.45 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=40.1
Q ss_pred cEEEccCCCCCCCCCCceeeeeeccchhh-hcccCCCCCChHHHHHHHHHHHHHHHhh
Q psy4109 19 DLVLSDLGQGVPFRAGAFDGAISISALQW-LCNADKTSHNPAKRLYKFFSSLFACLWS 75 (77)
Q Consensus 19 ~~~~~D~~~~lPf~~~sFD~v~s~~~l~w-~~d~~~~~~~p~~~l~~~~~~l~~~L~~ 75 (77)
+=+-.|| .++ .+|...|-.-|.+|=|| |+.--.....-...|+....+||++++.
T Consensus 82 eGlytdM-nAi-R~dE~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~iy~~ik~ 137 (309)
T cd00645 82 EGLYTDM-NAI-RPDEDLDNIHSIYVDQWDWEKVISKGERNLETLKETVNKIYKAIKE 137 (309)
T ss_pred ceeccCC-ccc-cCCcccCccceeEeccccHHhhcCccccCHHHHHHHHHHHHHHHHH
Confidence 3344577 334 35677899999999999 6654455566677888888899998864
No 249
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=21.24 E-value=1.4e+02 Score=23.00 Aligned_cols=43 Identities=12% Similarity=-0.071 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHhcCC-----CCcEEEccCCCC----CCCCCCceeeeeecc
Q psy4109 1 MKKNAFYTNVARDREV-----EGDLVLSDLGQG----VPFRAGAFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~-----~~~~~~~D~~~~----lPf~~~sFD~v~s~~ 43 (77)
+||++..+..|+.+.. ...+..+|.... .+-..+.||.|++|-
T Consensus 69 ~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 69 ADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred echhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccCcccEEEeCC
Confidence 4899999999987631 123343442110 011235799999997
No 250
>KOG3243|consensus
Probab=20.88 E-value=48 Score=22.10 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=12.1
Q ss_pred CCCceeeeeeccch
Q psy4109 32 RAGAFDGAISISAL 45 (77)
Q Consensus 32 ~~~sFD~v~s~~~l 45 (77)
..+.||+|++++++
T Consensus 73 ~r~~~daVi~IGvl 86 (158)
T KOG3243|consen 73 KRGKFDAVICIGVL 86 (158)
T ss_pred hccCceEEEEEEEE
Confidence 57889999999875
No 251
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=20.84 E-value=1.4e+02 Score=21.54 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=29.7
Q ss_pred CcEEEccCCCCCCCCC---CceeeeeeccchhhhcccCCCCCChHHHHHHHHHHHHHHHh
Q psy4109 18 GDLVLSDLGQGVPFRA---GAFDGAISISALQWLCNADKTSHNPAKRLYKFFSSLFACLW 74 (77)
Q Consensus 18 ~~~~~~D~~~~lPf~~---~sFD~v~s~~~l~w~~d~~~~~~~p~~~l~~~~~~l~~~L~ 74 (77)
.....||..+ +.-.+ ++||+|++++= ++. .+-+-..+..|++.|+
T Consensus 146 ~sm~aGDF~e-~y~~~~~~~~~d~VvT~FF---IDT--------A~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 146 LSMCAGDFLE-VYGPDENKGSFDVVVTCFF---IDT--------AENIIEYIETIEHLLK 193 (270)
T ss_pred eeEecCccEE-ecCCcccCCcccEEEEEEE---eec--------hHHHHHHHHHHHHHhc
Confidence 4567777744 33334 89999999942 322 3556677888888876
No 252
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=20.28 E-value=25 Score=18.45 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCCcEEEccCCCCCCCCCCceee
Q psy4109 5 AFYTNVARDREVEGDLVLSDLGQGVPFRAGAFDG 38 (77)
Q Consensus 5 ~~ML~~A~~r~~~~~~~~~D~~~~lPf~~~sFD~ 38 (77)
.+.++.|++++....++ ++.+.|| ++.|+-
T Consensus 11 ~~Lv~~A~~~gA~~~vl--~~L~~lP--~~~Y~s 40 (44)
T PF11387_consen 11 DELVRHARRNGAPDDVL--DALERLP--DREYES 40 (44)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHCC--ccCCCC
Confidence 35678888887544444 3335676 555653
No 253
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=20.20 E-value=29 Score=23.19 Aligned_cols=43 Identities=2% Similarity=-0.056 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHhcC----C--CCcEEEccCCCCCC-C-CCC-ceeeeeecc
Q psy4109 1 MKKNAFYTNVARDRE----V--EGDLVLSDLGQGVP-F-RAG-AFDGAISIS 43 (77)
Q Consensus 1 iDiS~~ML~~A~~r~----~--~~~~~~~D~~~~lP-f-~~~-sFD~v~s~~ 43 (77)
+|+++.+++.++++. . ..+++++|+.+.++ + ..+ .||.|+.-.
T Consensus 78 vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 78 EEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred EeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 588999999888763 1 24789999743333 1 123 367766543
No 254
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=20.18 E-value=3.2e+02 Score=19.17 Aligned_cols=49 Identities=8% Similarity=-0.161 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEccCCCCCCCC-CCceeeeeeccchhhhcc
Q psy4109 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFR-AGAFDGAISISALQWLCN 50 (77)
Q Consensus 1 iDiS~~ML~~A~~r~~~~~~~~~D~~~~lPf~-~~sFD~v~s~~~l~w~~d 50 (77)
+|+++...+..+.+.+. ..+.+|+.+-.+.. .+.+|.++.+.--|-+..
T Consensus 28 ~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 28 NEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSI 77 (275)
T ss_pred EeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhhH
Confidence 47888888888877643 36778885432222 467999998875454443
No 255
>PRK11524 putative methyltransferase; Provisional
Probab=20.16 E-value=31 Score=24.42 Aligned_cols=26 Identities=8% Similarity=0.036 Sum_probs=19.0
Q ss_pred CcEEEccCCCCC-CCCCCceeeeeecc
Q psy4109 18 GDLVLSDLGQGV-PFRAGAFDGAISIS 43 (77)
Q Consensus 18 ~~~~~~D~~~~l-Pf~~~sFD~v~s~~ 43 (77)
..++++|..+.+ .+.+++||+|++.-
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDP 35 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADP 35 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECC
Confidence 467888875422 35789999999964
Done!