RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4109
(77 letters)
>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId:
562]}
Length = 343
Score = 24.9 bits (53), Expect = 1.2
Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 5/35 (14%)
Query: 28 GVPFRAGAFDGAISISALQWLCNADKTSHNPAKRL 62
+ A F+ ++ + S N +
Sbjct: 271 ALGSYATVFEEMNALQHFE-----AFCSVNGPQFY 300
>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId:
301298]}
Length = 332
Score = 24.1 bits (51), Expect = 2.3
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 31 FRAGAFDGAISISALQWLCNADKTSHNPAKRL 62
+ G G IS++ D +S AK
Sbjct: 298 YSEGVRQGRISLNQF-----VDISSTKAAKLF 324
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 23.8 bits (51), Expect = 2.8
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 13 DREVEGDLVLS 23
RE E DL+++
Sbjct: 24 SRENEADLIIA 34
>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 154
Score = 23.5 bits (51), Expect = 2.9
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 54 TSHNPAKRLYKF 65
TS P++R F
Sbjct: 5 TSRKPSQRTRSF 16
>d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId:
275]}
Length = 335
Score = 23.8 bits (50), Expect = 3.3
Identities = 6/26 (23%), Positives = 7/26 (26%), Gaps = 5/26 (19%)
Query: 37 DGAISISALQWLCNADKTSHNPAKRL 62
G + I D S AK
Sbjct: 301 RGRLDIHRF-----VDAASTKAAKLF 321
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 23.4 bits (49), Expect = 3.8
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 1 MKKNAFYTNVARDREVEGDLVLSDLGQGVPFRAG 34
MK + N +R V+ + L A
Sbjct: 122 MKPGSLLINASRGTVVDIPALADALASKHLAGAA 155
>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens
[TaxId: 43663]}
Length = 325
Score = 23.5 bits (49), Expect = 4.0
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 31 FRAGAFDGAISISALQWLCNADKTSHNPAKRL 62
G G +S+ L + PAK
Sbjct: 292 LTNGVNKGRLSLERL-----VEVMCEKPAKLF 318
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 23.4 bits (50), Expect = 4.0
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 13 DREVEGDLVLS 23
+RE E D+V++
Sbjct: 23 EREGETDMVVA 33
>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 334
Score = 23.4 bits (49), Expect = 4.3
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 31 FRAGAFDGAISISALQWLCNADKTSHNPAKRL 62
+ G + + TS N AK
Sbjct: 300 WDKAVATGKMDENQF-----VAVTSTNAAKIF 326
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 23.0 bits (49), Expect = 4.4
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 13 DREVEGDLVLS 23
DRE EGD++
Sbjct: 32 DRENEGDMIFP 42
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
[TaxId: 329]}
Length = 330
Score = 23.4 bits (49), Expect = 4.5
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 34 GAFDGAISISALQWLCNADKTSHNPAKRL 62
G +G IS++ + + PAK
Sbjct: 299 GVNEGRISLTQF-----VELVATRPAKVF 322
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 23.0 bits (49), Expect = 4.6
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 13 DREVEGDLVLS 23
DRE EGDL+++
Sbjct: 26 DRENEGDLIMA 36
>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2
{Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
Length = 384
Score = 23.0 bits (48), Expect = 6.3
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 51 ADKTSHNPAKRL 62
+ NPAK
Sbjct: 365 VEIQCTNPAKVY 376
>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 180
Score = 22.5 bits (48), Expect = 6.8
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 54 TSHNPAKRLYKF 65
TS P+ R+ F
Sbjct: 8 TSRRPSPRIRSF 19
>d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2
{Dictyostelium discoideum [TaxId: 44689]}
Length = 334
Score = 22.7 bits (47), Expect = 7.0
Identities = 4/26 (15%), Positives = 7/26 (26%), Gaps = 5/26 (19%)
Query: 37 DGAISISALQWLCNADKTSHNPAKRL 62
G ++ TS A+
Sbjct: 306 TGKLTWCQF-----VRATSSERARIF 326
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.429
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 270,824
Number of extensions: 9179
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 15
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)