BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4110
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 25 PNYFQ--HRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECS 82
P YF D+ ++ GIR A ++A A ++ R L PG E +DE +
Sbjct: 403 PRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPGV---EAQTDEELQDY 456
Query: 83 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 142
+R T+YHP T +MG D + +DP LRV GV GLRV DAS+MP V+ NPN +
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 143 MIGEKGADMIK 153
MIGE+ AD+I+
Sbjct: 517 MIGERCADLIR 527
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 25 PNYFQ--HRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECS 82
P YF D+ ++ GIR A ++A A ++ R L PG E +DE +
Sbjct: 403 PRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPGV---EAQTDEELQDY 456
Query: 83 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 142
+R T+YHP T +MG D + +DP LRV GV GLRV DAS+MP V+ NPN +
Sbjct: 457 IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 143 MIGEKGADMIK 153
MIGE+ AD+I+
Sbjct: 517 MIGERCADLIR 527
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 8/131 (6%)
Query: 25 PNYFQ--HRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECS 82
P YF D+ ++ GIR A ++A A ++ R L PG E +DE +
Sbjct: 403 PRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGREL---SPGV---EAQTDEELQDY 456
Query: 83 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 142
+R T YHP T +MG D + +DP LRV GV GLRV DAS+MP V+ NPN +
Sbjct: 457 IRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVM 516
Query: 143 MIGEKGADMIK 153
MIGE+ AD+I+
Sbjct: 517 MIGERCADLIR 527
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
P Y DI T+I+ ++ + A+ + RP + + D E +
Sbjct: 439 NPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPF-----DPRLRDPTDDAAIESYI 493
Query: 84 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 143
R TI+HP T M P VVDP L+V GVDGLR++D SI+P + + P +
Sbjct: 494 RDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYL 553
Query: 144 IGEKGADMIKED 155
+G++GAD+IK D
Sbjct: 554 VGKQGADLIKAD 565
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 8/131 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVS-ASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLR 84
N+F + DI + EGIR ++++ FK MP L SD+ ++
Sbjct: 449 NFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPWEMP------LDSDKEMHRAVL 502
Query: 85 HFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMI 144
T +HPT T ++ D + VVDP+L+V+G+ LRV DAS++PII +
Sbjct: 503 DRCQTAFHPTGTARLSKNID-QGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAV 561
Query: 145 GEKGADMIKED 155
GEK ADMIK +
Sbjct: 562 GEKCADMIKAE 572
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 62.8 bits (151), Expect = 9e-11, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 21 LVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWE 80
L+ P Y Q RD E + + + + R LL P A E+ D++
Sbjct: 398 LIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELLPGTPNSAA-EM--DDFIA 454
Query: 81 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAP 140
S+ T +HP TC+MG DP+AVVD LR+ +D L V+DASIMP + +G +A
Sbjct: 455 RSV----ITHHHPCGTCRMG--KDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAA 508
Query: 141 TIMIGEKGA 149
+ I E A
Sbjct: 509 VLAIAETFA 517
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 25 PNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLR 84
P YF + D+ ++A N+S S A + Y + + PG + W +
Sbjct: 452 PQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI---PGDNLAYDADLSAWTEYIP 508
Query: 85 HFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMI 144
+ YH TC M P + VVD RVYGV GLRVID SI P +S + +
Sbjct: 509 YHFRPNYHGVGTCSM-MPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAM 567
Query: 145 GEKGADMIKEDW 156
K +D I ED+
Sbjct: 568 ALKISDAILEDY 579
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 25 PNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYW-ECSL 83
P +F + D+ ++A ++++ A K+Y + L PG + + + W + L
Sbjct: 456 PKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL---PGYNLVQNATLSQWSDYVL 512
Query: 84 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 143
++F +H S+C M + VVD +VYG GLRVID SI P VS +
Sbjct: 513 QNFRPN-WHAVSSCSM-MSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYG 570
Query: 144 IGEKGADMIKEDWG 157
+ K AD I +D+
Sbjct: 571 MALKVADAILDDYA 584
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFS---------D 76
NY+ + D+ + G++ + +S A K Y L PG F++ D
Sbjct: 389 NYYSNSTDLAHCVSGMKKIGELLSSDALKPYKVEDL----PGIDGFDILGIPLPENQTDD 444
Query: 77 EYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGN 136
+E R + +H C +G V+D RV G++ LRV+D S P + +
Sbjct: 445 AAFETFCREAVASYWHYHGGCLVG------EVLDGDFRVTGINALRVVDGSTFPYSPASH 498
Query: 137 PNAPTIMIGEK-GADMIKE 154
P +M+G G+ +++E
Sbjct: 499 PQGFYLMLGRYVGSKILQE 517
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFS---------D 76
NY+ + D+ + G++ + ++ A K Y L PG F + D
Sbjct: 388 NYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDL----PGVEGFNILGIPLPKDQTDD 443
Query: 77 EYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGN 136
+E R + +H C +G V+D RV G++ LRV+D S P + +
Sbjct: 444 AAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASH 497
Query: 137 PNAPTIMIGEK-GADMIKE 154
P +M+G G +++E
Sbjct: 498 PQGFYLMLGRYVGIKILQE 516
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 20/139 (14%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFS---------D 76
NY+ + D+ + G++ + ++ A K Y L PG F + D
Sbjct: 388 NYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDL----PGVEGFNILGIPLPKDQTDD 443
Query: 77 EYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGN 136
+E R + +H C +G V+D RV G++ LRV+D S P + +
Sbjct: 444 AAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASH 497
Query: 137 PNAPTIMIGEK-GADMIKE 154
P +M+G G +++E
Sbjct: 498 PQGFYLMLGRYVGIKILQE 516
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 37.7 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 87 TFTIYHPTSTCKMGPPTDPE-AVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T H S+ +G + P+ AVVD ++V+G + L ++DA I+P + +GNP +
Sbjct: 470 TMNSNHWVSSTTIG--SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAA 527
Query: 146 EKGADMI 152
E+ A I
Sbjct: 528 EQAAAKI 534
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 37.7 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 87 TFTIYHPTSTCKMGPPTDPE-AVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T H S+ +G + P+ AVVD ++V+G + L ++DA I+P + +GNP +
Sbjct: 475 TMNSNHWVSSTTIG--SSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAA 532
Query: 146 EKGADMI 152
E+ A I
Sbjct: 533 EQAAAKI 539
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
YHP C +G TD RV G L V D S++P V NP + E+ +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 151 -MIKED 155
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
YHP C +G TD RV G L V D S++P V NP + E+ +
Sbjct: 439 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 492
Query: 151 -MIKED 155
+IK+D
Sbjct: 493 RIIKQD 498
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
YHP C +G TD RV G L V D S++P V NP + E+ +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 151 -MIKED 155
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
YHP C +G TD RV G L V D S++P V +P + E+ +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVDPFVTITALAERNVE 494
Query: 151 -MIKED 155
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
Y P C +G TD RV G L V D S++P V NP + E+ +
Sbjct: 443 YQPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 496
Query: 151 -MIKED 155
+IK+D
Sbjct: 497 RIIKQD 502
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
Y P C +G TD RV G L V D S++P V NP + E+ +
Sbjct: 441 YQPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 151 -MIKED 155
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
Y P C +G TD RV G L V D S++P V NP + E+ +
Sbjct: 441 YQPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 151 -MIKED 155
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
Y+P C +G TD RV G L V D S++P V NP + E+ +
Sbjct: 441 YNPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 151 -MIKED 155
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
YHP C +G TD RV G L V D S++P V P + E+ +
Sbjct: 441 YHPLGGCVLGKATDDYG------RVAGYKNLYVTDGSLIPGSVGVLPFVTITALAERNVE 494
Query: 151 -MIKED 155
+IK+D
Sbjct: 495 RIIKQD 500
>pdb|1GWS|A Chain A, Hexadecaheme High Molecular Weight Cytochrome Hmc From
Desulfovibrio Vulgaris Hildenborough
pdb|2CVC|A Chain A, Crystal Structure Of High-Molecular Weight Cytochrome C
From Desulfovibrio Vulgaris (Hildenborough)
Length = 545
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 24 QPNYFQHRRDIETLIEGI---RIA--FNVSASAAFK--KYNSRPLLTPMPGCA 69
QP+ F HR+ ++TLI GI ++A F++ + +NS LTP P CA
Sbjct: 443 QPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTP-PKCA 494
>pdb|1H29|A Chain A, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|B Chain B, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|C Chain C, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
pdb|1H29|D Chain D, Sulfate Respiration In Desulfovibrio Vulgaris
Hildenborough: Structure Of The 16-Heme Cytochrome C
Hmca At 2.5 A Resolution And A View Of Its Role In
Transmembrane Electron Transfer
Length = 514
Score = 28.1 bits (61), Expect = 2.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 24 QPNYFQHRRDIETLIEGI---RIA--FNVSASAAFK--KYNSRPLLTPMPGCA 69
QP+ F HR+ ++TLI GI ++A F++ + +NS LTP P CA
Sbjct: 412 QPSEFPHRKIVKTLIAGIGEDKLAATFHIEKGTLCQGCHHNSPASLTP-PKCA 463
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,558,322
Number of Sequences: 62578
Number of extensions: 219934
Number of successful extensions: 448
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 25
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)