BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4110
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 84/132 (63%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY RD++TL+EGI+ A +S ++ K+Y R T + GC SD YWEC++R
Sbjct: 478 NYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQ 537
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T H +CKMGP DP AVV+ LRV+GV GLRV+D SIMP + +GN +AP +MI
Sbjct: 538 NTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMPKVTAGNTHAPAVMIA 597
Query: 146 EKGADMIKEDWG 157
EKGA ++K WG
Sbjct: 598 EKGAYLLKRAWG 609
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 83/132 (62%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D++TL+EGI+ +S + K+Y R T + GC SD YWEC++R
Sbjct: 478 NYLTHEQDVKTLVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQ 537
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T H +CKMGP DP AVV+ LRV+G+ GLRV+D SIMP + SGN +AP +MI
Sbjct: 538 NTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIA 597
Query: 146 EKGADMIKEDWG 157
EKGA ++K WG
Sbjct: 598 EKGAYLLKRAWG 609
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 117 bits (293), Expect = 4e-26, Method: Composition-based stats.
Identities = 66/145 (45%), Positives = 84/145 (57%), Gaps = 11/145 (7%)
Query: 14 WLKTRIT-----LVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGC 68
WLK R V QPNY DIE +++ + A A + + L PG
Sbjct: 434 WLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKEL---QPGS 490
Query: 69 AMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASI 128
+ SD+ + +R + YHP+ TCKMG P+DP AVVDP+ RV GV+ LRV+DASI
Sbjct: 491 ---HIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASI 547
Query: 129 MPIIVSGNPNAPTIMIGEKGADMIK 153
MP +VSGN NAPTIMI EK AD+IK
Sbjct: 548 MPSMVSGNLNAPTIMIAEKAADIIK 572
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 115 bits (287), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 85/145 (58%), Gaps = 11/145 (7%)
Query: 14 WLKTRIT-----LVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGC 68
WLK R T + PNY D+E + +++ + A AF + + L PG
Sbjct: 439 WLKLRSTNPQDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGKEL---QPGS 495
Query: 69 AMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASI 128
+ SD+ + +R + YHP+ TCKMG P+DP AVVD + RV GV+ LRVIDASI
Sbjct: 496 ---HVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASI 552
Query: 129 MPIIVSGNPNAPTIMIGEKGADMIK 153
MP +VSGN NAPTIMI EK AD+IK
Sbjct: 553 MPSVVSGNLNAPTIMIAEKAADVIK 577
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 108 bits (269), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 83/145 (57%), Gaps = 11/145 (7%)
Query: 14 WLKTRIT-----LVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGC 68
WLK R V PNY D+E + +R++ + A A + + L PG
Sbjct: 436 WLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGKEL---QPGS 492
Query: 69 AMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASI 128
+ SD+ + +R + YHP+ TCKMG +DP AVVD + +V GV+ LRV+DASI
Sbjct: 493 ---HVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASI 549
Query: 129 MPIIVSGNPNAPTIMIGEKGADMIK 153
MP +VSGN NAPT+MI EK AD+IK
Sbjct: 550 MPSVVSGNLNAPTVMIAEKAADIIK 574
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H D E +R+ + AF Y P + P G SDE + LR
Sbjct: 405 NYMSHPEDWEKFRHCVRLTREIFGQTAFDAYRG-PEIQPGEGVQ-----SDEQIDAFLRE 458
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
+ YHP TCKMG DP AVVDP+ RV GVDGLRV D+SI P + GN N P+IM G
Sbjct: 459 HLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTG 518
Query: 146 EKGADMI--KEDWGYVNTKPF 164
EK AD I K+ N +P+
Sbjct: 519 EKAADHILGKQPLARSNQEPW 539
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H D E +R+ + +AF Y P + P G SDE + LR
Sbjct: 405 NYMSHAEDWEKFRHCVRLTREIFGQSAFHDYRG-PEIQPGEGVQ-----SDEEIDAFLRE 458
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
+ YHP TC+MG DP AVVDP+ RV G+DGLRV D+SI P + GN N P+IM G
Sbjct: 459 HLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTYGNLNGPSIMTG 518
Query: 146 EKGADMI--KEDWGYVNTKPF 164
EK AD I K+ N +P+
Sbjct: 519 EKAADHILGKQPLARSNQEPW 539
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H D E +R+ + AF Y P + P G SDE + LR
Sbjct: 405 NYMSHPEDWEKFRHCVRLTREIFGQKAFDAYRG-PEIQPGEGVQ-----SDEQIDSFLRE 458
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
+ YHP TCKMG DP AVVDP+ RV GVDGLRV D+SI P + GN N P+IM G
Sbjct: 459 HLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMTG 518
Query: 146 EKGADMI--KEDWGYVNTKPF 164
EK AD I K+ N +P+
Sbjct: 519 EKAADHILGKQPLARSNQEPW 539
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D AVVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKMADMIR 532
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D AVVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMAVVDAEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKMADMIR 532
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D IRI + A A Y+ R + PG A L +D + +R
Sbjct: 415 NYMSHDQDWREFRAAIRITREIFAQPALAPYSGREI---SPGSA---LQTDAQIDAFVRE 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T YHP+ + KMG DP AVVD + RV+G++GLR++DASIMP +V+GN NAPTIMI
Sbjct: 469 HAETAYHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGNLNAPTIMIA 528
Query: 146 EKGADMIK 153
EK AD+I+
Sbjct: 529 EKLADVIR 536
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D AVVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKMADMIR 532
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H D E +R+ + AF +Y P + P + +DE + LR
Sbjct: 405 NYMSHPEDWEKFRHCVRLTREIFGQKAFDQYRG-PEIQPGE-----RVQTDEEIDAFLRE 458
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
+ YHP TCKMG DP AVVDP RV GVDGLRV D+SI P + GN NAP+IM G
Sbjct: 459 HLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSIMTG 518
Query: 146 EKGADMI--KEDWGYVNTKPF 164
EK AD I K+ N +P+
Sbjct: 519 EKAADHILGKQPLARSNQEPW 539
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 79/128 (61%), Gaps = 8/128 (6%)
Query: 25 PNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLR 84
PNY DI+T+I GI+I + + + K+ R ++ PG A + SD+ +R
Sbjct: 408 PNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHFKREIV---PGPA---VTSDDEIVADIR 461
Query: 85 HFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMI 144
TIYHP TC+MG DP +VVDP L+V G+ +RV+DASIMP +V+GN NAPTIMI
Sbjct: 462 SRAETIYHPVGTCRMG--KDPASVVDPCLQVRGLRNIRVVDASIMPNLVAGNTNAPTIMI 519
Query: 145 GEKGADMI 152
E A++I
Sbjct: 520 AENAAEII 527
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D AVVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D IRI + A A Y+ R + PG A L +D + +R
Sbjct: 415 NYMSHEQDWREFRAAIRITREIFAQPALAPYSGREI---SPGSA---LQTDAQIDAFVRE 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T YHP+ + KMG DP AVVD + RV+G++GLR++DASIMP +V+GN NAPTIM+
Sbjct: 469 HAETAYHPSCSNKMGHADDPMAVVDGQGRVHGLEGLRIVDASIMPQVVTGNLNAPTIMMA 528
Query: 146 EKGADMIK 153
EK AD+I+
Sbjct: 529 EKLADVIR 536
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H D E +R+ + AF Y P + P ++ +DE + LR
Sbjct: 405 NYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRG-PEIQPGE-----KVRTDEEIDAFLRE 458
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
+ YHP TCKMG DP AVVDP RV GVDGLRV D+SI P I GN NAP+IM G
Sbjct: 459 HLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTG 518
Query: 146 EKGADMI--KEDWGYVNTKPF 164
EK AD I K+ N +P+
Sbjct: 519 EKAADHILGKQPLARSNQEPW 539
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D AVVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A K+ R + +P C +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITRQIINQPALDKFRGREI-SPGIDCQ-----TDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T YHP TCKMG +D AVVD RV+G++GLRV+DASIMP+I++GN NA TIMIG
Sbjct: 467 HAETAYHPCGTCKMG--SDEMAVVDDEGRVHGLEGLRVVDASIMPLIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 525 EKIADNIR 532
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 77/128 (60%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y+ R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYHGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKMADMIR 532
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1
Length = 560
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + +Y R + +P P SD + +R
Sbjct: 415 NYMSHDKDWQEFRDAIRITREIIEQPTMDEYRGREI-SPGPNVQ-----SDAELDEFVRQ 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T YHP +CKMG D AVVD RV+G++GLRVIDASIMP+I +GN NAPTIMI
Sbjct: 469 HAETAYHPAGSCKMGSADDAMAVVDGAGRVHGLEGLRVIDASIMPVIATGNLNAPTIMIA 528
Query: 146 EKGADMIK 153
EK AD ++
Sbjct: 529 EKMADKVR 536
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGT---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKMADMIR 532
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGT---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKMADMIR 532
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGT---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGT---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGT---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGT---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREI---SPGT---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D +VVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 8/129 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY +D + + IRI + A A +Y R + +P P E+ +DE + +R
Sbjct: 413 NYMATEQDWQEFRDAIRITREIMAQPALDEYRGREI-SPGP-----EVQTDEQLDAFVRE 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP+ +CKMG D AVVD + RV+G++GLRV+DASIMP+I++GN NA TIMI
Sbjct: 467 HAETAFHPSCSCKMG--EDEMAVVDGQGRVHGLEGLRVVDASIMPLIITGNLNATTIMIA 524
Query: 146 EKGADMIKE 154
EK AD I++
Sbjct: 525 EKIADRIRQ 533
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H D E +R+ + AF Y P + P ++ +DE + LR
Sbjct: 405 NYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRG-PEIQPGE-----KVQTDEEIDGFLRE 458
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
+ YHP TCKMG DP AVVDP RV GVDGLRV D+SI P I GN NAP+IM G
Sbjct: 459 HLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTG 518
Query: 146 EKGADMI 152
EK AD I
Sbjct: 519 EKSADHI 525
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H D E +R+ + AAF Y + PG + + SDE + LR
Sbjct: 405 NYMSHAEDWEKFRHCVRLTRELFGQAAFDDYRGAEI---QPGES---VQSDEEIDAFLRE 458
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
+ YHP TCKMG DP AVVDP+ RV GV+ LRV D+SI P + GN N P+IM G
Sbjct: 459 HLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYGNLNGPSIMTG 518
Query: 146 EKGADMI--KEDWGYVNTKPF 164
EK AD I K+ N +P+
Sbjct: 519 EKAADHILGKQPLARSNQEPW 539
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY +D + +GIR+ + A Y R + PG ++ SDE + +R
Sbjct: 417 NYMSSEQDWQEFRDGIRLTREIMQQPALDPYRGREI---SPG---IDVQSDEALDQFVRE 470
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T YHP+ +CKMG TD AVVD + RV+G+ LRV+DASIMPII +GN NAPTIMI
Sbjct: 471 HAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGNLNAPTIMIA 528
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 529 EKIADKIR 536
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IR + A +Y R + PG E +DE + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRTTREIMHQPALDQYRGREI---SPGV---ECQTDEQLDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D AVVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK ADMI+
Sbjct: 525 EKIADMIR 532
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 8/128 (6%)
Query: 25 PNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLR 84
PNY DI+T+I GI+I + + + K+ ++ PG A+ DE E +R
Sbjct: 408 PNYLSDHEDIKTMIAGIKIGRAILQAPSMAKHFKHEVV---PGQAVKT--DDEIIE-DIR 461
Query: 85 HFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMI 144
TIYHP TC+MG DP +VVDP L++ G+ +RV+DASIMP +V+GN NAPTIMI
Sbjct: 462 RRAETIYHPVGTCRMG--KDPASVVDPCLKIRGLANIRVVDASIMPHLVAGNTNAPTIMI 519
Query: 145 GEKGADMI 152
E A++I
Sbjct: 520 AENAAEII 527
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H D E +R+ + AF Y P + P P ++ +D+ + LR
Sbjct: 405 NYMSHPEDWEKFRHCVRLTREIFGQKAFDDYRG-PEIQPGP-----DVQTDDQIDAFLRE 458
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
+ YHP TCKMG DP AVVDP RV GV+GLRV D+SI P + GN N P+IM G
Sbjct: 459 HLESAYHPCGTCKMGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGNLNGPSIMTG 518
Query: 146 EKGADMI 152
EK AD I
Sbjct: 519 EKAADHI 525
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY +D + +GIR+ + A Y R + PG ++ SDE + +R
Sbjct: 417 NYMASEQDWQEFRDGIRLTREIMQQPALDPYRGREI---SPG---IDVQSDEALDQFVRE 470
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T YHP+ +CKMG TD AVVD + RV+G+ LRV+DASIMPII +GN NAPTIMI
Sbjct: 471 HAETAYHPSCSCKMG--TDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGNLNAPTIMIA 528
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 529 EKIADKIR 536
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A KY R + PG E SD + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREI---SPG---IECQSDAELDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D AVVD RV+G++GLRV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGLRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 525 EKMADAIR 532
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY +D + +GIR+ + A Y R + PG ++ +DE + +R
Sbjct: 415 NYMATEQDWQEFRDGIRLTREIMQQPALDPYRGREI---SPG---IDVQTDEQLDKFIRE 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP+ +CKMG TD AVVD RV+G+ GLRV+DASIMPII +GN NAPTIMI
Sbjct: 469 HAETAFHPSCSCKMG--TDEMAVVDGEGRVHGMQGLRVVDASIMPIITTGNLNAPTIMIA 526
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 527 EKIADKIR 534
>sp|Q88AE7|BETA_PSESM Choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=betA PE=3 SV=1
Length = 568
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY +D + +GIR+ + A Y R + PG ++ SDE + +R
Sbjct: 417 NYMASDQDWQEFRDGIRLTREIMQQPALDPYRGREI---SPG---IDVQSDEALDQFVRE 470
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T YHP+ +CKMG TD AVVD + RV+G+ LRV+DASIMPII +GN NAPTIMI
Sbjct: 471 HAETAYHPSCSCKMG--TDEMAVVDGQGRVHGMQNLRVVDASIMPIITTGNLNAPTIMIA 528
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 529 EKIADKIR 536
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY +D + +GIR+ + A + R + PG E+ +DE + +R
Sbjct: 415 NYMATEQDWQEFRDGIRLTREIMQQPALDPFRGREI---SPG---IEVQTDEQLDKFVRE 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP+ +CKMG TD AVVD + RV+G+ GLRV+DASIMPII +GN NAPTIM+
Sbjct: 469 HAETAFHPSCSCKMG--TDDMAVVDGQGRVHGMQGLRVVDASIMPIITTGNLNAPTIMMA 526
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 527 EKIADKIR 534
>sp|Q3K5H3|BETA_PSEPF Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1)
GN=betA PE=3 SV=1
Length = 567
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY +D + +GIR+ + A + R + PG E+ +DE + +R
Sbjct: 415 NYMATEQDWQEFRDGIRLTREIMQQPALDAFRGREI---SPG---IEVQTDEQLDKFIRE 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP+ +CKMG TD AVVD RV+G+ GLRV+DASIMPII +GN NAPTIM+
Sbjct: 469 HAETAFHPSCSCKMG--TDDMAVVDGEGRVHGMQGLRVVDASIMPIITTGNLNAPTIMMA 526
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 527 EKIADKIR 534
>sp|B5Y008|BETA_KLEP3 Choline dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betA
PE=3 SV=1
Length = 554
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A KY R + PG E SD + +R+
Sbjct: 413 NYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREI---SPGT---ECQSDAELDEFVRN 466
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP TCKMG D AVVD RV+G++G+RV+DASIMP I++GN NA TIMIG
Sbjct: 467 HAETAFHPCGTCKMG--YDEMAVVDGEGRVHGLEGVRVVDASIMPQIITGNLNATTIMIG 524
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 525 EKMADAIR 532
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY +D + + IRI + A A KY R + PG E+ +DE + +R
Sbjct: 411 NYMSTEQDWQEFRDAIRITREIMAQPALDKYRGREI---SPG---LEVQTDEELDEFIRT 464
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP+ +CKMG D AVVD + RV+G++GLRV+DASIMP I++GN NA TIMI
Sbjct: 465 HAETAFHPSCSCKMG--EDEMAVVDGQGRVHGMEGLRVVDASIMPQIITGNLNATTIMIA 522
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 523 EKIADRIR 530
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 74/129 (57%), Gaps = 8/129 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + + IRI + A A Y R + +P C SD + +R
Sbjct: 415 NYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREI-SPGIDCQ-----SDAELDAFIRE 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP+ +CKMG D AVVD + RV+GV GLRV+DASIMP I++GN NA TIM+
Sbjct: 469 HAETAFHPSCSCKMG--EDDMAVVDGQGRVHGVQGLRVVDASIMPEIITGNLNATTIMMA 526
Query: 146 EKGADMIKE 154
EK AD I++
Sbjct: 527 EKIADRIRD 535
>sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1
Length = 561
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 78/128 (60%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + +GIR+ + A Y R L PG + + SD + +R+
Sbjct: 415 NYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGREL---SPGVS---VQSDAELDEFIRN 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP+ +CKMG +D AVVD + RV+G++GLRV+DASIMP+I++GN NA TIM+
Sbjct: 469 HAETAFHPSCSCKMG--SDDMAVVDGQGRVHGMEGLRVVDASIMPLIITGNLNATTIMMA 526
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 527 EKIADRIR 534
>sp|B7V5R3|BETA_PSEA8 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58)
GN=betA PE=3 SV=1
Length = 561
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 78/128 (60%), Gaps = 8/128 (6%)
Query: 26 NYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSLRH 85
NY H +D + +GIR+ + A Y R L PG + + SD + +R+
Sbjct: 415 NYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGREL---SPGVS---VQSDAELDEFIRN 468
Query: 86 FTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIG 145
T +HP+ +CKMG +D AVVD + RV+G++GLRV+DASIMP+I++GN NA TIM+
Sbjct: 469 HAETAFHPSCSCKMG--SDDMAVVDGQGRVHGMEGLRVVDASIMPLIITGNLNATTIMMA 526
Query: 146 EKGADMIK 153
EK AD I+
Sbjct: 527 EKIADRIR 534
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,770,264
Number of Sequences: 539616
Number of extensions: 2782537
Number of successful extensions: 5691
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5346
Number of HSP's gapped (non-prelim): 177
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)