Query psy4110
Match_columns 169
No_of_seqs 183 out of 1108
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:16:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 3.8E-47 8.3E-52 329.2 14.6 157 5-161 462-621 (623)
2 PF05199 GMC_oxred_C: GMC oxid 100.0 3.6E-42 7.9E-47 252.3 12.4 140 7-148 1-144 (144)
3 TIGR01810 betA choline dehydro 100.0 2E-39 4.4E-44 282.8 14.5 146 5-156 382-530 (532)
4 PLN02785 Protein HOTHEAD 100.0 3.8E-38 8.3E-43 277.4 14.3 143 6-158 423-582 (587)
5 PRK02106 choline dehydrogenase 100.0 5.1E-38 1.1E-42 275.5 14.3 145 5-157 389-536 (560)
6 COG2303 BetA Choline dehydroge 100.0 1.3E-31 2.9E-36 234.3 11.1 144 4-154 389-535 (542)
7 TIGR02462 pyranose_ox pyranose 99.9 5.6E-23 1.2E-27 179.4 12.9 128 6-156 411-543 (544)
8 COG1252 Ndh NADH dehydrogenase 93.0 0.27 5.8E-06 42.2 6.0 59 106-164 279-339 (405)
9 TIGR03169 Nterm_to_SelD pyridi 91.0 0.6 1.3E-05 38.8 5.8 57 108-164 261-318 (364)
10 PTZ00318 NADH dehydrogenase-li 90.9 0.67 1.5E-05 39.6 6.1 57 108-164 298-356 (424)
11 KOG2495|consensus 76.1 3.1 6.7E-05 36.2 3.3 41 108-154 349-390 (491)
12 TIGR02734 crtI_fam phytoene de 66.3 24 0.00053 30.6 6.9 42 115-160 455-496 (502)
13 PF04939 RRS1: Ribosome biogen 64.1 20 0.00043 27.0 5.1 53 116-168 5-57 (164)
14 PRK04176 ribulose-1,5-biphosph 61.4 28 0.00062 27.7 5.9 63 94-158 191-256 (257)
15 PF13807 GNVR: G-rich domain o 60.9 21 0.00046 23.2 4.3 34 117-150 37-70 (82)
16 TIGR02733 desat_CrtD C-3',4' d 51.3 49 0.0011 28.6 6.2 71 73-154 420-490 (492)
17 PRK12835 3-ketosteroid-delta-1 48.8 53 0.0012 29.5 6.1 58 108-165 512-579 (584)
18 TIGR02730 carot_isom carotene 42.4 45 0.00097 29.0 4.5 37 116-156 456-492 (493)
19 PRK12843 putative FAD-binding 41.3 2.4E+02 0.0053 25.2 9.1 52 107-160 520-576 (578)
20 PLN02661 Putative thiazole syn 37.9 52 0.0011 27.9 4.1 51 106-158 276-329 (357)
21 PRK09754 phenylpropionate diox 37.9 42 0.0009 28.3 3.6 46 107-154 257-308 (396)
22 TIGR01292 TRX_reduct thioredox 37.6 46 0.001 26.1 3.7 43 108-155 256-299 (300)
23 TIGR00292 thiazole biosynthesi 35.9 43 0.00093 26.7 3.2 52 104-157 200-254 (254)
24 PRK12842 putative succinate de 34.1 1.1E+02 0.0025 27.3 5.9 51 107-159 515-570 (574)
25 PRK12837 3-ketosteroid-delta-1 33.7 84 0.0018 27.6 4.9 59 91-154 447-510 (513)
26 PRK07121 hypothetical protein; 33.4 81 0.0018 27.4 4.8 49 107-155 432-490 (492)
27 PRK12844 3-ketosteroid-delta-1 32.5 1E+02 0.0022 27.5 5.3 51 108-158 492-552 (557)
28 PRK12845 3-ketosteroid-delta-1 30.1 1E+02 0.0022 27.7 4.8 47 108-154 507-563 (564)
29 PF10865 DUF2703: Domain of un 29.8 73 0.0016 22.7 3.2 79 33-120 21-105 (120)
30 PRK08274 tricarballylate dehyd 29.2 1.2E+02 0.0025 26.1 5.0 51 108-158 403-463 (466)
31 PRK06134 putative FAD-binding 26.9 1.5E+02 0.0033 26.5 5.4 65 91-160 506-575 (581)
32 COG0718 Uncharacterized protei 25.8 94 0.002 21.6 3.1 32 13-45 44-78 (105)
33 PF00532 Peripla_BP_1: Peripla 24.9 39 0.00084 27.0 1.2 48 114-161 217-264 (279)
34 PRK07057 sdhA succinate dehydr 24.7 1.7E+02 0.0036 26.4 5.3 48 109-156 366-426 (591)
35 PRK08275 putative oxidoreducta 24.4 1.2E+02 0.0026 27.0 4.3 57 89-155 346-403 (554)
36 TIGR03385 CoA_CoA_reduc CoA-di 24.3 1.1E+02 0.0025 25.8 4.0 45 108-153 252-302 (427)
37 COG1635 THI4 Ribulose 1,5-bisp 24.3 96 0.0021 25.0 3.2 52 105-158 207-261 (262)
38 PRK12839 hypothetical protein; 23.7 1.7E+02 0.0037 26.3 5.1 47 108-156 517-568 (572)
39 PLN00128 Succinate dehydrogena 23.4 2.2E+02 0.0047 26.1 5.8 48 109-156 405-466 (635)
40 cd02960 AGR Anterior Gradient 21.8 82 0.0018 22.7 2.3 38 13-50 84-128 (130)
41 COG0252 AnsB L-asparaginase/ar 21.6 1.8E+02 0.0038 24.7 4.5 68 89-159 23-99 (351)
42 PRK08958 sdhA succinate dehydr 21.1 1.8E+02 0.004 26.1 4.8 48 109-156 362-423 (588)
43 PRK08205 sdhA succinate dehydr 21.0 2.1E+02 0.0046 25.6 5.2 48 109-156 361-418 (583)
44 COG5111 RPC34 DNA-directed RNA 20.5 3E+02 0.0064 22.2 5.2 60 25-86 160-221 (301)
45 PF15607 Toxin_60: Putative to 20.4 1.1E+02 0.0025 21.2 2.7 23 24-46 89-111 (112)
No 1
>KOG1238|consensus
Probab=100.00 E-value=3.8e-47 Score=329.19 Aligned_cols=157 Identities=52% Similarity=0.891 Sum_probs=150.5
Q ss_pred CCCCCCceEeeCCCC---CeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCCCCCCCcccccCChHHHHh
Q psy4110 5 SGKSSISHTWLKTRI---TLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWEC 81 (169)
Q Consensus 5 ~~~~SrG~v~l~s~~---~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~sd~~~~~ 81 (169)
.+|+|||++.|++++ .|+|+||||++|+|++.+++|++.+.++.++.+|+++...++..+.|+|+.....+|++|+|
T Consensus 462 l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c 541 (623)
T KOG1238|consen 462 LRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWEC 541 (623)
T ss_pred cCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHH
Confidence 479999999999985 69999999999999999999999999999999999999999988899998777899999999
Q ss_pred hhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCCC
Q psy4110 82 SLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNT 161 (169)
Q Consensus 82 ~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~~~~~ 161 (169)
|+|..+.+.||++|||+||+..|+.+|||+++|||||+|||||||||||.+|++||++++||||||+|++|+++|....+
T Consensus 542 ~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~ 621 (623)
T KOG1238|consen 542 FCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKD 621 (623)
T ss_pred HHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977654
No 2
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=3.6e-42 Score=252.31 Aligned_cols=140 Identities=39% Similarity=0.590 Sum_probs=112.3
Q ss_pred CCCCceEeeCCC---CCeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcC-CCCCCCcccccCChHHHHhh
Q psy4110 7 KSSISHTWLKTR---ITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLL-TPMPGCAMFELFSDEYWECS 82 (169)
Q Consensus 7 ~~SrG~v~l~s~---~~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~~sd~~~~~~ 82 (169)
|+|||+|+|+++ +.|.|+++|+.++.|++.++++++.+++++++. ++++...... ...+.+......++++|++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 689999999995 569999999999999999999999999999998 7666543221 11122222245778899999
Q ss_pred hhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHH
Q psy4110 83 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 148 (169)
Q Consensus 83 ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~ 148 (169)
+++...+++|++||||||+++ ..+|||++|||||++||||+|+||||+.+++||++|+||+|||+
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~-~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDP-DTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSST-TTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccC-CceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 999999999999999999875 55999999999999999999999999999999999999999996
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2e-39 Score=282.85 Aligned_cols=146 Identities=40% Similarity=0.591 Sum_probs=130.0
Q ss_pred CCCCCCceEeeCCCC---CeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCCCCCCCcccccCChHHHHh
Q psy4110 5 SGKSSISHTWLKTRI---TLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWEC 81 (169)
Q Consensus 5 ~~~~SrG~v~l~s~~---~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~sd~~~~~ 81 (169)
..++|||+|+|++.+ .|.|+++|+++|.|++.++++++++++++++.+++.+...+. .|+. ...+|++|++
T Consensus 382 ~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~~---~~~~d~~~~~ 455 (532)
T TIGR01810 382 MYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI---SPGP---EVQTDEEIDE 455 (532)
T ss_pred cCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc---CCCC---CCCCHHHHHH
Confidence 457899999998865 599999999999999999999999999999988877643322 2332 3578999999
Q ss_pred hhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy4110 82 SLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDW 156 (169)
Q Consensus 82 ~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~ 156 (169)
|+|+...+.+|++||||||+.++++||||++||||||+||||||+||||+++++||++|+||||||+|++|+++.
T Consensus 456 ~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~ 530 (532)
T TIGR01810 456 FVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGKK 530 (532)
T ss_pred HHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999985568899999999999999999999999999999999999999999999999753
No 4
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=3.8e-38 Score=277.38 Aligned_cols=143 Identities=27% Similarity=0.346 Sum_probs=126.2
Q ss_pred CCCCCceEeeCCCC---CeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCC--------------CCCCC
Q psy4110 6 GKSSISHTWLKTRI---TLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLT--------------PMPGC 68 (169)
Q Consensus 6 ~~~SrG~v~l~s~~---~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~--------------~~p~~ 68 (169)
.|+|||+|+|++++ +|.|++|||+||.|++.++++++.+++++++++|+.+...+..+ ..|+
T Consensus 423 ~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~- 501 (587)
T PLN02785 423 GPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPK- 501 (587)
T ss_pred CCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCC-
Confidence 78999999999975 69999999999999999999999999999999988775332110 0121
Q ss_pred cccccCChHHHHhhhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHH
Q psy4110 69 AMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 148 (169)
Q Consensus 69 ~~~~~~sd~~~~~~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~ 148 (169)
...++++|++|+|+...+.||++|||+|| +|||+++|||||+||||||+||||.+|++|||+|+||||||+
T Consensus 502 ---~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~ 572 (587)
T PLN02785 502 ---HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYM 572 (587)
T ss_pred ---CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHH
Confidence 13578899999999999999999999999 499999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q psy4110 149 ADMIKEDWGY 158 (169)
Q Consensus 149 a~~I~~~~~~ 158 (169)
|++|++++..
T Consensus 573 A~~Il~~~~~ 582 (587)
T PLN02785 573 GVKILRERLG 582 (587)
T ss_pred HHHHHHHhhh
Confidence 9999998744
No 5
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=5.1e-38 Score=275.54 Aligned_cols=145 Identities=43% Similarity=0.622 Sum_probs=129.8
Q ss_pred CCCCCCceEeeCCCC---CeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCCCCCCCcccccCChHHHHh
Q psy4110 5 SGKSSISHTWLKTRI---TLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWEC 81 (169)
Q Consensus 5 ~~~~SrG~v~l~s~~---~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~sd~~~~~ 81 (169)
..++|||+|+|++++ .|.|+++|+.+|.|++.++++++++++++++++++.+...+. .|++ ...+++++++
T Consensus 389 ~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~~---~~~~~~~~~~ 462 (560)
T PRK02106 389 MRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI---SPGA---DVQTDEEIDA 462 (560)
T ss_pred cCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCCc---ccCCHHHHHH
Confidence 468999999998875 699999999999999999999999999999988877654332 2432 2467889999
Q ss_pred hhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhc
Q psy4110 82 SLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWG 157 (169)
Q Consensus 82 ~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~ 157 (169)
|+++...+++|++||||||+ +++||||++|||||++||||||+||||+++++||++|+||+|||+|++|+++++
T Consensus 463 ~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~~ 536 (560)
T PRK02106 463 FVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRTP 536 (560)
T ss_pred HHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999997 358999999999999999999999999999999999999999999999999874
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=234.30 Aligned_cols=144 Identities=33% Similarity=0.496 Sum_probs=125.3
Q ss_pred CCCCCCCceEeeCCCC---CeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCCCCCCCcccccCChHHHH
Q psy4110 4 NSGKSSISHTWLKTRI---TLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWE 80 (169)
Q Consensus 4 ~~~~~SrG~v~l~s~~---~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~sd~~~~ 80 (169)
...+.|+|.|.+++.+ .|.|++||++++.|++.++++++..++++.+..+..+...+. .|+. ...+++++.
T Consensus 389 ~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~---~~~~---~~~~~~~~~ 462 (542)
T COG2303 389 PMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAEL---APGP---RVTTDEDIS 462 (542)
T ss_pred cCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhh---cCCC---ccccHHHHH
Confidence 3568999999999974 699999999999999999999999999999766655544332 2432 367788999
Q ss_pred hhhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy4110 81 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKE 154 (169)
Q Consensus 81 ~~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~ 154 (169)
.|++....+.+|++||||||.+ +..+|+|++|||||++||||+|||+||+++++||++|++|+|||+|++|++
T Consensus 463 ~~~~~~~~t~~H~~GT~rMG~D-p~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~ 535 (542)
T COG2303 463 AAIRFLARTAYHPMGTCRMGSD-PAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILG 535 (542)
T ss_pred HHHHhccCccccccccccCCCC-chhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhh
Confidence 9999999999999999999954 345555599999999999999999999999999999999999999999998
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.89 E-value=5.6e-23 Score=179.44 Aligned_cols=128 Identities=15% Similarity=0.109 Sum_probs=101.6
Q ss_pred CCCCCceEeeCCC-----CCeeeecCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcCCCCCCCcccccCChHHHH
Q psy4110 6 GKSSISHTWLKTR-----ITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWE 80 (169)
Q Consensus 6 ~~~SrG~v~l~s~-----~~P~Id~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~sd~~~~ 80 (169)
-+....+|+|+++ |.|.....|--++.|++.+..+++.+.++++..+...... .+
T Consensus 411 lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G~~~~~~------~~-------------- 470 (544)
T TIGR02462 411 EPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKIGGYLPGS------LP-------------- 470 (544)
T ss_pred CCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCcccc------cc--------------
Confidence 4566789999775 3465555555599999999999999999887653211000 00
Q ss_pred hhhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy4110 81 CSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDW 156 (169)
Q Consensus 81 ~~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~ 156 (169)
.|. ....++|++||||||.+ ++++|||++|||||++||||+|+|+||+.+++||++|+||+|+|+|+.|++++
T Consensus 471 ~~~--~~~~~~H~~Gt~rMG~d-p~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 471 QFM--EPGLALHLAGTTRIGFD-EQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred ccc--CCCccccCCCCeecCCC-CCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 010 11347899999999976 68999999999999999999999999999999999999999999999999875
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.03 E-value=0.27 Score=42.24 Aligned_cols=59 Identities=25% Similarity=0.210 Sum_probs=43.5
Q ss_pred CCccCCCCcEeccCCcEEe-eCCCCCCC-CCCCChHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4110 106 EAVVDPRLRVYGVDGLRVI-DASIMPII-VSGNPNAPTIMIGEKGADMIKEDWGYVNTKPF 164 (169)
Q Consensus 106 ~~VVD~~~rV~Gv~nLrV~-DaSv~P~~-~~~np~~t~~~iaer~a~~I~~~~~~~~~~~~ 164 (169)
.=+||+++++.|.+|+|++ |.+-++.. |.-.+.-..+..|+.+|+.|++++....-.||
T Consensus 279 rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f 339 (405)
T COG1252 279 RLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPF 339 (405)
T ss_pred CEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3589999999999999998 99988875 11112233466777888888888877555555
No 9
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=91.01 E-value=0.6 Score=38.75 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=42.4
Q ss_pred ccCCCCcEeccCCcEEe-eCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy4110 108 VVDPRLRVYGVDGLRVI-DASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPF 164 (169)
Q Consensus 108 VVD~~~rV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~~~~~~~~ 164 (169)
.||+.+|..+.+|+|++ |++.++..+........+..|..+|+.|.+.+......+|
T Consensus 261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~~~~ 318 (364)
T TIGR03169 261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPLRPF 318 (364)
T ss_pred EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCCCCC
Confidence 67888999899999998 8887776554444455677888889888888765544444
No 10
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=90.95 E-value=0.67 Score=39.65 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=41.9
Q ss_pred ccCCCCcEeccCCcEEe-eCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCC-CCCC
Q psy4110 108 VVDPRLRVYGVDGLRVI-DASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVN-TKPF 164 (169)
Q Consensus 108 VVD~~~rV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~~~~-~~~~ 164 (169)
.||+.+|+.+.+|+|++ |++-++..+........+.-|..+|+.|.+.+.... .+||
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~ 356 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKPMSKPF 356 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 58999999999999988 888776543323334567788999999998885443 4455
No 11
>KOG2495|consensus
Probab=76.13 E-value=3.1 Score=36.23 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=29.1
Q ss_pred ccCCCCcEeccCCcEEe-eCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy4110 108 VVDPRLRVYGVDGLRVI-DASIMPIIVSGNPNAPTIMIGEKGADMIKE 154 (169)
Q Consensus 108 VVD~~~rV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~I~~ 154 (169)
.||+.+||.|++|++-+ |.+-+|..+. +..+|++-+..+.+
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~~~------tAQVA~QqG~yLAk 390 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGLKP------TAQVAEQQGAYLAK 390 (491)
T ss_pred eeeceeeccCcCceEEeccccccccCcc------HHHHHHHHHHHHHH
Confidence 89999999999999977 8885554332 44556665555443
No 12
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=66.29 E-value=24 Score=30.60 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=30.8
Q ss_pred EeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCC
Q psy4110 115 VYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVN 160 (169)
Q Consensus 115 V~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~~~~ 160 (169)
...++|||.|.+|++|-.. ...+++=|..+|+.|.++.+...
T Consensus 455 ~t~i~gLyl~G~~~~pG~G----v~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 455 DRKIDNLYLVGAGTHPGAG----VPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CCCCCCEEEeCCCCCCCCC----HHHHHHHHHHHHHHHHhhccCCC
Confidence 3578999999999988311 23355678888898988876554
No 13
>PF04939 RRS1: Ribosome biogenesis regulatory protein (RRS1); InterPro: IPR007023 This is a family of eukaryotic ribosomal biogenesis regulatory proteins.; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=64.05 E-value=20 Score=27.02 Aligned_cols=53 Identities=11% Similarity=0.183 Sum_probs=44.7
Q ss_pred eccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy4110 116 YGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPFDDGI 168 (169)
Q Consensus 116 ~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~~~~~~~~~~~~ 168 (169)
+++.||-+.|.+-++.....+.--.+..+|.-.+..|..++-...+...+||+
T Consensus 5 ~Dlg~Lla~D~~p~d~~~~~~~e~~L~~~ardn~Q~Lin~l~~Lp~~~~~~g~ 57 (164)
T PF04939_consen 5 FDLGNLLAFDPNPLDPSSSSDREEYLKSLARDNTQLLINQLFELPTERTEDGV 57 (164)
T ss_pred eeccceeeecCCcccccccCCcHHHHHHHHHHHHHHHHHHHHhCCceecCCCe
Confidence 57789999999999888888999999999999999988887665555567775
No 14
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=61.39 E-value=28 Score=27.75 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=42.7
Q ss_pred CCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCC--CCCCCChHHHH-HHHHHHHHHHHHhhcc
Q psy4110 94 TSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPI--IVSGNPNAPTI-MIGEKGADMIKEDWGY 158 (169)
Q Consensus 94 ~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~--~~~~np~~t~~-~iaer~a~~I~~~~~~ 158 (169)
.|--.|=.+..+.-||+...+| +.||+|+..++--. .|...|..--| .-++|+|+.|++.++.
T Consensus 191 ~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 191 PGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred CCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 3443433333456799999999 79999987654333 45555555544 4689999999998864
No 15
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=60.92 E-value=21 Score=23.18 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=27.9
Q ss_pred ccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHH
Q psy4110 117 GVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150 (169)
Q Consensus 117 Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~ 150 (169)
.+.|.+|+|..+.|..|.......++++|-=++-
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~Gl 70 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLGL 70 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHHH
Confidence 4568899999999999998888888888765543
No 16
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=51.30 E-value=49 Score=28.64 Aligned_cols=71 Identities=15% Similarity=-0.078 Sum_probs=40.7
Q ss_pred cCChHHHHhhhhcccccccccCCCcccCCCCCCCCccCCCCcEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHH
Q psy4110 73 LFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMI 152 (169)
Q Consensus 73 ~~sd~~~~~~ir~~~~~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I 152 (169)
..|...++.|......+.+|..=+.... +.--...+ ..++|||.|.+|++|-. + ...+++=|..+|+.|
T Consensus 420 v~TP~t~~~~~~~~~G~~~G~~~~~~q~------~~~~~~~~-t~i~gLyl~G~~~~pG~-G---v~g~~~sg~~~a~~i 488 (492)
T TIGR02733 420 LATPRTFERWTGRPQGIVGGLGQRPSTF------GPFGLSSR-TPVKGLWLCGDSIHPGE-G---TAGVSYSALMVVRQI 488 (492)
T ss_pred ccCCchHHHHhCCCCcEECCCCcCcccc------CCcCCCCC-CCCCCeEEecCccCCCC-c---HHHHHHHHHHHHHHH
Confidence 4566778877655444445443222111 00001113 37999999999999831 1 234556678888877
Q ss_pred HH
Q psy4110 153 KE 154 (169)
Q Consensus 153 ~~ 154 (169)
.+
T Consensus 489 ~~ 490 (492)
T TIGR02733 489 LA 490 (492)
T ss_pred hh
Confidence 64
No 17
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=48.82 E-value=53 Score=29.53 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=39.9
Q ss_pred ccCCCCcEec-----cCCcEEee---CCCCCC-CC-CCCChHHHHHHHHHHHHHHHHhhccCCCCCCC
Q psy4110 108 VVDPRLRVYG-----VDGLRVID---ASIMPI-IV-SGNPNAPTIMIGEKGADMIKEDWGYVNTKPFD 165 (169)
Q Consensus 108 VVD~~~rV~G-----v~nLrV~D---aSv~P~-~~-~~np~~t~~~iaer~a~~I~~~~~~~~~~~~~ 165 (169)
++|.++||.. ++|||.+- ++++-. -+ .++....++..+..+++.+.+........++|
T Consensus 512 ~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~~~~~~~~ 579 (584)
T PRK12835 512 RTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAAAAADTTT 579 (584)
T ss_pred cCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhhcCCCCcc
Confidence 4555555554 68999985 455532 22 36678888999999999998887666665554
No 18
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=42.36 E-value=45 Score=29.03 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=27.1
Q ss_pred eccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q psy4110 116 YGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDW 156 (169)
Q Consensus 116 ~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~ 156 (169)
-.++|||.|.+|++|-. . ...+++-|..+|+.|.+++
T Consensus 456 t~i~gLyl~G~~~~pG~---G-v~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPGQ---G-LNAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCCCeEEecCcCCCCC---C-HHHHHHHHHHHHHHHHhhc
Confidence 47999999999999831 1 1345566888888887753
No 19
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=41.26 E-value=2.4e+02 Score=25.22 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=35.4
Q ss_pred CccCCCCcEeccCCcEEee---CCCCCC--CCCCCChHHHHHHHHHHHHHHHHhhccCC
Q psy4110 107 AVVDPRLRVYGVDGLRVID---ASIMPI--IVSGNPNAPTIMIGEKGADMIKEDWGYVN 160 (169)
Q Consensus 107 ~VVD~~~rV~Gv~nLrV~D---aSv~P~--~~~~np~~t~~~iaer~a~~I~~~~~~~~ 160 (169)
-|+|.++++ +.|||.+- ++++-. ...++....++..+..+++.+.+..+++.
T Consensus 520 qVld~dg~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~~ 576 (578)
T PRK12843 520 RVLNADGQP--ISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTLARR 576 (578)
T ss_pred eEECCCCCC--cCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhhccc
Confidence 455555553 79999984 344432 12366778889999999998887766553
No 20
>PLN02661 Putative thiazole synthesis
Probab=37.92 E-value=52 Score=27.94 Aligned_cols=51 Identities=25% Similarity=0.346 Sum_probs=37.4
Q ss_pred CCccCCCCcEeccCCcEEeeCCCCCC--CCCCCChHHHHH-HHHHHHHHHHHhhcc
Q psy4110 106 EAVVDPRLRVYGVDGLRVIDASIMPI--IVSGNPNAPTIM-IGEKGADMIKEDWGY 158 (169)
Q Consensus 106 ~~VVD~~~rV~Gv~nLrV~DaSv~P~--~~~~np~~t~~~-iaer~a~~I~~~~~~ 158 (169)
+.||+...+| ++||+|+..++--. .|...|..--|. -+.|+|+.|++.++.
T Consensus 276 ~~~v~~t~ev--~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 276 DAIVRLTREV--VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred HHHHhccCcc--cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 4577777777 78999987665433 556666665554 579999999999964
No 21
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=37.87 E-value=42 Score=28.26 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=32.1
Q ss_pred CccCCCCcEeccCCcEEe-eCCCCCCCCCCCC----h-HHHHHHHHHHHHHHHH
Q psy4110 107 AVVDPRLRVYGVDGLRVI-DASIMPIIVSGNP----N-APTIMIGEKGADMIKE 154 (169)
Q Consensus 107 ~VVD~~~rV~Gv~nLrV~-DaSv~P~~~~~np----~-~t~~~iaer~a~~I~~ 154 (169)
=+||+.+|. ..+|+|.+ |...+|.. .+.+ + ...+.-|+.+|+.|..
T Consensus 257 i~vd~~~~t-s~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 257 IVIDEACRT-CDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLG 308 (396)
T ss_pred EEECCCCcc-CCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcC
Confidence 368999998 78999998 88877754 4332 1 3456677777777753
No 22
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=37.57 E-value=46 Score=26.12 Aligned_cols=43 Identities=19% Similarity=0.041 Sum_probs=30.2
Q ss_pred ccCCCCcEeccCCcEEe-eCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q psy4110 108 VVDPRLRVYGVDGLRVI-DASIMPIIVSGNPNAPTIMIGEKGADMIKED 155 (169)
Q Consensus 108 VVD~~~rV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~I~~~ 155 (169)
.||+.++. +++|+|++ |+.-++ .+.....+.-|+.+|..|.+.
T Consensus 256 ~v~~~~~t-~~~~vya~GD~~~~~----~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 256 VTDEGMRT-SVPGVFAAGDVRDKG----YRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred EECCCCcc-CCCCEEEeecccCcc----hhhhhhhhhhHHHHHHHHHhh
Confidence 57888886 89999998 665421 133456777788888887654
No 23
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=35.89 E-value=43 Score=26.73 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCCCccCCCCcEeccCCcEEeeCCCCCC--CCCCCChHHHH-HHHHHHHHHHHHhhc
Q psy4110 104 DPEAVVDPRLRVYGVDGLRVIDASIMPI--IVSGNPNAPTI-MIGEKGADMIKEDWG 157 (169)
Q Consensus 104 ~~~~VVD~~~rV~Gv~nLrV~DaSv~P~--~~~~np~~t~~-~iaer~a~~I~~~~~ 157 (169)
.++.||+....| ++||+|+..++--. .|...|..--| .-+.|+|+.|++.++
T Consensus 200 ~e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 200 AEVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred hHHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 356789888888 79999987665432 44555555544 468999999998864
No 24
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=34.09 E-value=1.1e+02 Score=27.26 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=35.9
Q ss_pred CccCCCCcEeccCCcEEee---CCCCCC-CC-CCCChHHHHHHHHHHHHHHHHhhccC
Q psy4110 107 AVVDPRLRVYGVDGLRVID---ASIMPI-IV-SGNPNAPTIMIGEKGADMIKEDWGYV 159 (169)
Q Consensus 107 ~VVD~~~rV~Gv~nLrV~D---aSv~P~-~~-~~np~~t~~~iaer~a~~I~~~~~~~ 159 (169)
-|+|.++++ ++|||.+- ++++-. -+ .++....++..+..+++.+.+..+.+
T Consensus 515 qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~ 570 (574)
T PRK12842 515 EVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGGR 570 (574)
T ss_pred eEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhccc
Confidence 466666553 68999986 345432 12 37888999999999999988776443
No 25
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=33.66 E-value=84 Score=27.64 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=37.9
Q ss_pred cccCCCcccCCCCCCCCccCCCCcEeccCCcEEee---CCCC-CCCC-CCCChHHHHHHHHHHHHHHHH
Q psy4110 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVID---ASIM-PIIV-SGNPNAPTIMIGEKGADMIKE 154 (169)
Q Consensus 91 ~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~D---aSv~-P~~~-~~np~~t~~~iaer~a~~I~~ 154 (169)
+|.+|.++.-. ..-|+|.++++ +.|||.+- ++++ ..-+ .+|....++..+..+++.+..
T Consensus 447 ~~T~GGl~in~---~~qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 447 LGTKGGLRTDT---AARVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred ceeCCCceECC---CceEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 34445444432 23466666654 69999983 3455 2223 478899999999999988744
No 26
>PRK07121 hypothetical protein; Validated
Probab=33.38 E-value=81 Score=27.43 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=36.8
Q ss_pred CccCCC-CcEec-----cCCcEEee---CCCCCC-CCCCCChHHHHHHHHHHHHHHHHh
Q psy4110 107 AVVDPR-LRVYG-----VDGLRVID---ASIMPI-IVSGNPNAPTIMIGEKGADMIKED 155 (169)
Q Consensus 107 ~VVD~~-~rV~G-----v~nLrV~D---aSv~P~-~~~~np~~t~~~iaer~a~~I~~~ 155 (169)
-++|.+ +||.. ++|||.+- ++++-. -+++|....++..+..+++.+.+.
T Consensus 432 l~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 432 LRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred eeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 367888 88876 88999985 345432 246888999999999999887654
No 27
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=32.52 E-value=1e+02 Score=27.51 Aligned_cols=51 Identities=22% Similarity=0.208 Sum_probs=36.1
Q ss_pred ccCCCCcEec-----cCCcEEee---CCCCCC-CCC-CCChHHHHHHHHHHHHHHHHhhcc
Q psy4110 108 VVDPRLRVYG-----VDGLRVID---ASIMPI-IVS-GNPNAPTIMIGEKGADMIKEDWGY 158 (169)
Q Consensus 108 VVD~~~rV~G-----v~nLrV~D---aSv~P~-~~~-~np~~t~~~iaer~a~~I~~~~~~ 158 (169)
.+|.++||.. ++|||.+- ++++-. -++ ++.....+..+..+++.+.+...+
T Consensus 492 ~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~ 552 (557)
T PRK12844 492 LTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSA 552 (557)
T ss_pred cCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCC
Confidence 4555555555 78999984 345532 233 788899999999999998776544
No 28
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=30.11 E-value=1e+02 Score=27.70 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=32.7
Q ss_pred ccCCCCcEec-----cCCcEEee---CCCCC-CCCC-CCChHHHHHHHHHHHHHHHH
Q psy4110 108 VVDPRLRVYG-----VDGLRVID---ASIMP-IIVS-GNPNAPTIMIGEKGADMIKE 154 (169)
Q Consensus 108 VVD~~~rV~G-----v~nLrV~D---aSv~P-~~~~-~np~~t~~~iaer~a~~I~~ 154 (169)
.+|.++||.. ++|||.+- ++++- .-++ ++.....+..+..+++.+.+
T Consensus 507 ~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 507 RADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred eECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 4445555544 78999984 45553 2333 78889999999999988754
No 29
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=29.79 E-value=73 Score=22.68 Aligned_cols=79 Identities=18% Similarity=0.043 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCCcCC--CC----CCCcccccCChHHHHhhhhcccccccccCCCcccCCCCCCC
Q psy4110 33 DIETLIEGIRIAFNVSASAAFKKYNSRPLLT--PM----PGCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPE 106 (169)
Q Consensus 33 D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~~--~~----p~~~~~~~~sd~~~~~~ir~~~~~~~H~~GTc~Mg~~~~~~ 106 (169)
--+.+.++++.+...++..++.-...+..-. .+ -.++. -......+++|+.... ..-++++|.=.
T Consensus 21 Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~~~S~~-I~inG~piE~~l~~~v--~~s~C~~c~~~------ 91 (120)
T PF10865_consen 21 TGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQPLESPT-IRINGRPIEDLLGAEV--GESPCESCGCS------ 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcccCCCe-eeECCEehhHhhCCcc--ccCcccccccc------
Confidence 4567889999999988877665433221100 00 01110 0123345777773222 23344444311
Q ss_pred CccCCCCcEeccCC
Q psy4110 107 AVVDPRLRVYGVDG 120 (169)
Q Consensus 107 ~VVD~~~rV~Gv~n 120 (169)
..=|.++|++.++|
T Consensus 92 ~g~~~~CRt~~~~g 105 (120)
T PF10865_consen 92 CGGDVDCRTLEYEG 105 (120)
T ss_pred cCCCccceeEEECC
Confidence 12466799988777
No 30
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=29.17 E-value=1.2e+02 Score=26.11 Aligned_cols=51 Identities=16% Similarity=0.041 Sum_probs=35.4
Q ss_pred ccCCCCcEec-----cCCcEEee---CC-CCCC-CCCCCChHHHHHHHHHHHHHHHHhhcc
Q psy4110 108 VVDPRLRVYG-----VDGLRVID---AS-IMPI-IVSGNPNAPTIMIGEKGADMIKEDWGY 158 (169)
Q Consensus 108 VVD~~~rV~G-----v~nLrV~D---aS-v~P~-~~~~np~~t~~~iaer~a~~I~~~~~~ 158 (169)
.+|.++||.. ++|||.+- ++ ++-. -+++|...-.+..+..+++.+.+..++
T Consensus 403 ~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~ 463 (466)
T PRK08274 403 KVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQH 463 (466)
T ss_pred EECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence 5667777753 89999985 33 6533 345677777788888888887766544
No 31
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=26.86 E-value=1.5e+02 Score=26.54 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=41.2
Q ss_pred cccCCCcccCCCCCCCCccCCCCcEeccCCcEEee---CCCCCC--CCCCCChHHHHHHHHHHHHHHHHhhccCC
Q psy4110 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVID---ASIMPI--IVSGNPNAPTIMIGEKGADMIKEDWGYVN 160 (169)
Q Consensus 91 ~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~D---aSv~P~--~~~~np~~t~~~iaer~a~~I~~~~~~~~ 160 (169)
++.+|..+.-. ..-|+|.++++ ++|||.+- ++++=. ..+++....++..+..+++.+.+......
T Consensus 506 ~~T~GGl~id~---~~qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~~~ 575 (581)
T PRK06134 506 LGTFAGLKTDA---DARVLDQAGQP--IPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASGYEA 575 (581)
T ss_pred cccCCCccCCC---CCceECCCCCC--cCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCCccc
Confidence 34444444432 23466665553 78999996 344421 23577888999999999999887665443
No 32
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.81 E-value=94 Score=21.63 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=20.6
Q ss_pred EeeCCCCC---eeeecCCCCCHHHHHHHHHHHHHHH
Q psy4110 13 TWLKTRIT---LVGQPNYFQHRRDIETLIEGIRIAF 45 (169)
Q Consensus 13 v~l~s~~~---P~Id~~yl~~~~D~~~l~~gi~~~~ 45 (169)
|.++.+.. ..|||..+. |+|.+.+..-+..+.
T Consensus 44 V~~~G~~ev~~v~Idp~l~d-peD~E~LeDLi~aA~ 78 (105)
T COG0718 44 VTINGKGEVKSVEIDPSLLD-PEDKEMLEDLILAAF 78 (105)
T ss_pred EEEeCCCcEEEEEeCHHHcC-cccHHHHHHHHHHHH
Confidence 44555544 358998886 888877766555443
No 33
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=24.93 E-value=39 Score=27.05 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=36.4
Q ss_pred cEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhccCCC
Q psy4110 114 RVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNT 161 (169)
Q Consensus 114 rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~~~~~ 161 (169)
.|.|.+||..+..|.+-.++-.-.+.+...+|+++++++.+...+...
T Consensus 217 ~v~g~d~~~~~~~~~~~~~~lt~i~~~~~~~G~~a~~~l~~~I~~~~~ 264 (279)
T PF00532_consen 217 SVVGFDNLEDPDFSTLEQPPLTTIQQPAYEMGRQAAEMLLERINKNEE 264 (279)
T ss_dssp CCGGHHHCCTCCT-SCCSCCEEECHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cchhhccccccccccccCCCeeEEecCCCchHHHHHHHHHHHHhcCCC
Confidence 677888876666776665566667889999999999999998855444
No 34
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.68 E-value=1.7e+02 Score=26.41 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=33.4
Q ss_pred cCCCCcEe--------ccCCcEEeeCCCCCC-----CCCCCChHHHHHHHHHHHHHHHHhh
Q psy4110 109 VDPRLRVY--------GVDGLRVIDASIMPI-----IVSGNPNAPTIMIGEKGADMIKEDW 156 (169)
Q Consensus 109 VD~~~rV~--------Gv~nLrV~DaSv~P~-----~~~~np~~t~~~iaer~a~~I~~~~ 156 (169)
+|.++||. .++|||.+---..-. -.++|..+-.+..+.++++.+.+..
T Consensus 366 vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~ 426 (591)
T PRK07057 366 TNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHV 426 (591)
T ss_pred ECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 77778875 389999984322111 2345788888999999998876543
No 35
>PRK08275 putative oxidoreductase; Provisional
Probab=24.42 E-value=1.2e+02 Score=26.96 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=38.5
Q ss_pred cccccCCCcccCCCCCCCCccCCCCcEeccCCcEEe-eCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q psy4110 89 TIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVI-DASIMPIIVSGNPNAPTIMIGEKGADMIKED 155 (169)
Q Consensus 89 ~~~H~~GTc~Mg~~~~~~~VVD~~~rV~Gv~nLrV~-DaSv~P~~~~~np~~t~~~iaer~a~~I~~~ 155 (169)
..+|.+|.-.||. =.||.+++. .++|||.| |++-.+ .|-.+..+.-+.++++.+.+.
T Consensus 346 ~~~~~~g~~~~Gg-----i~~d~~~~t-~i~gl~a~Ge~~~~~----~~~~~~~~~~G~~a~~~~~~~ 403 (554)
T PRK08275 346 SEIGFCSGHSASG-----VWVNEKAET-TVPGLYAAGDMASVP----HNYMLGAFTYGWFAGENAAEY 403 (554)
T ss_pred CCceeecccccCc-----EEECCCCcc-CCCCEEECcccCCch----hHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777874 378999986 79999998 443212 455566666677777766543
No 36
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=24.28 E-value=1.1e+02 Score=25.79 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=28.5
Q ss_pred ccCCCCcEeccCCcEEe-eCCCCCCCCCCCC-----hHHHHHHHHHHHHHHH
Q psy4110 108 VVDPRLRVYGVDGLRVI-DASIMPIIVSGNP-----NAPTIMIGEKGADMIK 153 (169)
Q Consensus 108 VVD~~~rV~Gv~nLrV~-DaSv~P~~~~~np-----~~t~~~iaer~a~~I~ 153 (169)
+||+.+|. ..+|+|++ |+.-+|....+.+ .......|..+|+.|.
T Consensus 252 ~vd~~~~t-~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 252 WVNEKFQT-SVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred EECCCcEe-CCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 57888886 78999998 8887776543321 1223444555555554
No 37
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=24.27 E-value=96 Score=24.98 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=37.2
Q ss_pred CCCccCCCCcEeccCCcEEeeCCCC--CCCCCCCChHHHHHH-HHHHHHHHHHhhcc
Q psy4110 105 PEAVVDPRLRVYGVDGLRVIDASIM--PIIVSGNPNAPTIMI-GEKGADMIKEDWGY 158 (169)
Q Consensus 105 ~~~VVD~~~rV~Gv~nLrV~DaSv~--P~~~~~np~~t~~~i-aer~a~~I~~~~~~ 158 (169)
+.-||...++|| +||+|+.-++- --.|...|..--|.+ +.|+|+.|.++++.
T Consensus 207 E~lvV~~T~eV~--pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 207 EDLVVENTGEVY--PGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred HHHHHhcccccc--CCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 345777777774 79999876554 336666776666555 78899999998864
No 38
>PRK12839 hypothetical protein; Provisional
Probab=23.68 E-value=1.7e+02 Score=26.25 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=33.2
Q ss_pred ccCCCCcEeccCCcEEee---CCCCCC--CCCCCChHHHHHHHHHHHHHHHHhh
Q psy4110 108 VVDPRLRVYGVDGLRVID---ASIMPI--IVSGNPNAPTIMIGEKGADMIKEDW 156 (169)
Q Consensus 108 VVD~~~rV~Gv~nLrV~D---aSv~P~--~~~~np~~t~~~iaer~a~~I~~~~ 156 (169)
|+|.++++ ++|||.+- +|++-. ..+++....++..+..+++.+.+.-
T Consensus 517 VLd~dg~p--IpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~ 568 (572)
T PRK12839 517 VLRDDDTP--IDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGST 568 (572)
T ss_pred EECCCCCC--cCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhcc
Confidence 44444442 88999985 355532 2357888999999999999887643
No 39
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=23.40 E-value=2.2e+02 Score=26.05 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=33.7
Q ss_pred cCCCCcEe---------ccCCcEEeeCCCCCC-----CCCCCChHHHHHHHHHHHHHHHHhh
Q psy4110 109 VDPRLRVY---------GVDGLRVIDASIMPI-----IVSGNPNAPTIMIGEKGADMIKEDW 156 (169)
Q Consensus 109 VD~~~rV~---------Gv~nLrV~DaSv~P~-----~~~~np~~t~~~iaer~a~~I~~~~ 156 (169)
||.++||. -++|||.+---..-. -+++|..+..+..|.++++.+.+..
T Consensus 405 vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 405 TNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred cCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 67777763 499999984422111 2346788899999999999887654
No 40
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=21.81 E-value=82 Score=22.68 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.2
Q ss_pred EeeCCCCCeee-------ecCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4110 13 TWLKTRITLVG-------QPNYFQHRRDIETLIEGIRIAFNVSAS 50 (169)
Q Consensus 13 v~l~s~~~P~I-------d~~yl~~~~D~~~l~~gi~~~~~i~~~ 50 (169)
+.++.++.++- ++.|.=.|.|.+.+.++++++.+++++
T Consensus 84 vFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~a~~~~~~ 128 (130)
T cd02960 84 MFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKKALKLLKT 128 (130)
T ss_pred EEECCCCCCcccccccccCccceeCcCcHHHHHHHHHHHHHHHhc
Confidence 44666654331 233333578999999999999999875
No 41
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=21.62 E-value=1.8e+02 Score=24.69 Aligned_cols=68 Identities=18% Similarity=0.050 Sum_probs=38.7
Q ss_pred cccccCCCcccCCCCCCCCccCCCC---------cEeccCCcEEeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhccC
Q psy4110 89 TIYHPTSTCKMGPPTDPEAVVDPRL---------RVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYV 159 (169)
Q Consensus 89 ~~~H~~GTc~Mg~~~~~~~VVD~~~---------rV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~I~~~~~~~ 159 (169)
...|..||..|+.+.+.+++.-.-. .|..++..--+++--++.+++.|-+...+ .++|+.|.+.++..
T Consensus 23 ~Il~TGGTIa~~~~~~t~~~~~~~~~~~i~~~~~~v~~~~~~~~i~~~~~~ni~S~~m~~~~w---~~la~~I~~~~~~~ 99 (351)
T COG0252 23 LILATGGTIASGTDSSTGAVTPTSGALEILALLPAVPALNIAANIEGEQVLNIDSSDMTPEDW---LRLAEAINEALDDG 99 (351)
T ss_pred EEEecCCeeeccccCCCCccccccchHHHHHHhhhccccccccceeeEEeccCCcccCCHHHH---HHHHHHHHHHhccC
Confidence 4678999999987654455544333 34443333334555555666666655443 45555666655443
No 42
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.12 E-value=1.8e+02 Score=26.15 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=32.8
Q ss_pred cCCCCcEe---------ccCCcEEeeCCC---CCC--CCCCCChHHHHHHHHHHHHHHHHhh
Q psy4110 109 VDPRLRVY---------GVDGLRVIDASI---MPI--IVSGNPNAPTIMIGEKGADMIKEDW 156 (169)
Q Consensus 109 VD~~~rV~---------Gv~nLrV~DaSv---~P~--~~~~np~~t~~~iaer~a~~I~~~~ 156 (169)
+|.++||. -++|||.|---. +-- -.++|..+-.+..|.++++.+.+..
T Consensus 362 vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 362 TKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred ECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 77777773 499999984321 111 2356777888889999998876544
No 43
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.03 E-value=2.1e+02 Score=25.62 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=32.1
Q ss_pred cCCCCcEe-----ccCCcEEeeCCCCCC-----CCCCCChHHHHHHHHHHHHHHHHhh
Q psy4110 109 VDPRLRVY-----GVDGLRVIDASIMPI-----IVSGNPNAPTIMIGEKGADMIKEDW 156 (169)
Q Consensus 109 VD~~~rV~-----Gv~nLrV~DaSv~P~-----~~~~np~~t~~~iaer~a~~I~~~~ 156 (169)
+|.+++|- .++|||.+---..-. -+++|..+-.+..+.++++.+.+..
T Consensus 361 id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 361 TTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred ECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 67777773 699999984322111 2346778888888888888776543
No 44
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=20.46 E-value=3e+02 Score=22.20 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=33.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhccccccccCCCcC--CCCCCCcccccCChHHHHhhhhcc
Q psy4110 25 PNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLL--TPMPGCAMFELFSDEYWECSLRHF 86 (169)
Q Consensus 25 ~~yl~~~~D~~~l~~gi~~~~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~~sd~~~~~~ir~~ 86 (169)
|.|...+.|++-+..-++.+.+++....|..-.....+ .-.|.. ....+-++|-.|+|..
T Consensus 160 pWFtD~elDvEfi~~ll~ii~rf~~~n~fp~kn~~~gpnv~~~P~y--~~ypT~~~I~n~vr~~ 221 (301)
T COG5111 160 PWFTDNELDVEFIARLLEIIERFLEKNLFPRKNFEEGPNVFYAPKY--EDYPTLEDIMNYVRNV 221 (301)
T ss_pred CccccCcccHHHHHHHHHHHHHHHHhccCCccchhcCCccccCCcc--CCCccHHHHHHHHHhc
Confidence 44445578999888888888888876544331111110 001221 1245667788887763
No 45
>PF15607 Toxin_60: Putative toxin 60
Probab=20.43 E-value=1.1e+02 Score=21.17 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.5
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Q psy4110 24 QPNYFQHRRDIETLIEGIRIAFN 46 (169)
Q Consensus 24 d~~yl~~~~D~~~l~~gi~~~~~ 46 (169)
-+++..||.|.+.+..|++...+
T Consensus 89 ~~~~~Dd~~D~~~I~~Gi~~~~~ 111 (112)
T PF15607_consen 89 GPPYGDDPGDQISIRIGINLYKK 111 (112)
T ss_pred CCCCCCCccHHHHHHHHHHHHHh
Confidence 36899999999999999987653
Done!