RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4110
(169 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 228 bits (583), Expect = 8e-73
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
P +F + D+ ++A ++++ A K+Y + L PG + + + W +
Sbjct: 455 DPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL---PGYNLVQNATLSQWSDYV 511
Query: 84 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 143
+H S+C M + VVD +VYG GLRVID SI P VS +
Sbjct: 512 LQNFRPNWHAVSSCSMMS-RELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYG 570
Query: 144 IGEKGADMIKEDWG 157
+ K AD I +D+
Sbjct: 571 MALKVADAILDDYA 584
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 227 bits (580), Expect = 2e-72
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
P Y DI T+I+ ++ + A+ + RP P D E +
Sbjct: 439 NPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPFD---PRLRDPT--DDAAIESYI 493
Query: 84 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 143
R TI+HP T M P VVDP L+V GVDGLR++D SI+P + + P +
Sbjct: 494 RDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYL 553
Query: 144 IGEKGADMIKED 155
+G++GAD+IK D
Sbjct: 554 VGKQGADLIKAD 565
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 224 bits (574), Expect = 1e-71
Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
P YF + D+ ++A N+S S A + Y + + PG + W +
Sbjct: 451 DPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI---PGDNLAYDADLSAWTEYI 507
Query: 84 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 143
+ YH TC M P + VVD RVYGV GLRVID SI P +S +
Sbjct: 508 PYHFRPNYHGVGTCSMMP-KEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYA 566
Query: 144 IGEKGADMIKEDWG 157
+ K +D I ED+
Sbjct: 567 MALKISDAILEDYA 580
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 215 bits (550), Expect = 5e-68
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFN-VSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECS 82
N+F + DI + EGIR +++ + FK MP L SD+ +
Sbjct: 447 NLNFFANDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPWEMP------LDSDKEMHRA 500
Query: 83 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 142
+ T +HPT T ++ + VVDP+L+V+G+ LRV DAS++PII
Sbjct: 501 VLDRCQTAFHPTGTARLSKN-IDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVY 559
Query: 143 MIGEKGADMIKEDW 156
+GEK ADMIK +
Sbjct: 560 AVGEKCADMIKAEH 573
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 202 bits (516), Expect = 2e-63
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 11/147 (7%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELF-----SDEY 78
+ NY+ + D+ + G++ + ++ A K Y L + D
Sbjct: 386 KFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAA 445
Query: 79 WECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPN 138
+E R + +H C +G V+D RV G++ LRV+D S P + +P
Sbjct: 446 FETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRVVDGSTFPYTPASHPQ 499
Query: 139 APTIMIGEKGADMIKEDWGYVNTKPFD 165
+M+G I ++ + K D
Sbjct: 500 GFYLMLGRYVGIKILQERSASDLKILD 526
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 195 bits (499), Expect = 9e-61
Identities = 53/135 (39%), Positives = 73/135 (54%), Gaps = 8/135 (5%)
Query: 24 QPNYFQH--RRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWEC 81
P YF D+ ++ GIR A ++A A ++ R L PG E +DE +
Sbjct: 402 DPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELS---PGV---EAQTDEELQD 455
Query: 82 SLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPT 141
+R T+YHP T +MG D + +DP LRV GV GLRV DAS+MP V+ NPN
Sbjct: 456 YIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITV 515
Query: 142 IMIGEKGADMIKEDW 156
+MIGE+ AD+I+
Sbjct: 516 MMIGERCADLIRSAR 530
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 192 bits (491), Expect = 1e-59
Identities = 41/132 (31%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
P Y Q RD E + + + + R LL PG S + +
Sbjct: 401 DPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELL---PGTPN----SAAEMDDFI 453
Query: 84 RHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIM 143
T +HP TC+MG DP+AVVD LR+ +D L V+DASIMP + +G +A +
Sbjct: 454 ARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLA 511
Query: 144 IGEKGADMIKED 155
I E A
Sbjct: 512 IAETFARQYHHH 523
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 174 bits (443), Expect = 1e-52
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 24 QPNYFQHRRDIETLIEGIRIAF-NVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECS 82
P + + D L++ + N+ + T +EY + +
Sbjct: 423 TPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMITPDVTQT-----------LEEYVD-A 470
Query: 83 LRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTI 142
T H S+ +G + AVVD ++V+G + L ++DA I+P + +GNP +
Sbjct: 471 YDPATMNSNHWVSSTTIGS-SPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLM 529
Query: 143 MIGEKGADMIKED 155
E+ A I
Sbjct: 530 SAAEQAAAKILAL 542
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 73.2 bits (179), Expect = 6e-16
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 91 YHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
YHP C +G D RV G L V D S++P V NP + E+ +
Sbjct: 441 YHPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVE 494
Query: 151 MI-KED 155
I K+D
Sbjct: 495 RIIKQD 500
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 59.4 bits (143), Expect = 3e-11
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 89 TIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 148
YHP + D R+ GL V+D S++P V NP + E+
Sbjct: 444 FTYHPLGGVLLN------KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERN 497
Query: 149 ADMI 152
D I
Sbjct: 498 MDKI 501
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 58.7 bits (141), Expect = 7e-11
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 92 HPTSTCKMGP-PTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGAD 150
H T +MG + V+ RV+G L + +P NP + + K +
Sbjct: 548 HLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCE 607
Query: 151 MIKEDWG 157
IK+++
Sbjct: 608 YIKQNFT 614
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.033
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 120 GLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPFDDG 167
G ++D IV NP TI G + I+E++ + + DG
Sbjct: 1658 GFSILD------IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Score = 32.7 bits (74), Expect = 0.053
Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 47/106 (44%)
Query: 56 YNSRPLLTPMPGCAMFELFSD--EYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRL 113
++S LL P +L + + ++ +Y T
Sbjct: 427 FHS-HLLVPASDLINKDLVKNNVSFNAKDIQ---IPVYD-TFD----------------- 464
Query: 114 RVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKE---DW 156
G D LRV+ SI IV D I W
Sbjct: 465 ---GSD-LRVLSGSISERIV----------------DCIIRLPVKW 490
Score = 30.0 bits (67), Expect = 0.40
Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 24/75 (32%)
Query: 78 YWECSLRHFTFTIYH-----PTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPII 132
WE + F T H P +G T D G+RVI A +
Sbjct: 489 KWETTT-QFKAT--HILDFGPGGASGLGVLTH--RNKDGT-------GVRVIVAGTL--- 533
Query: 133 VSGNPNAPTIMIGEK 147
NP+ G K
Sbjct: 534 -DINPDDD---YGFK 544
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 27.0 bits (59), Expect = 3.1
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 95 STCKMGPPTDPEAV 108
S C + PP + EA
Sbjct: 245 SVCFLVPPPNQEAQ 258
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 3.9
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 109 VDPRLRVYGVD---GLRVIDASI 128
+ L++Y D L I A++
Sbjct: 25 LQASLKLYADDSAPAL-AIKATM 46
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET:
ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A
3zzf_A*
Length = 307
Score = 26.4 bits (59), Expect = 5.2
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 16/58 (27%)
Query: 118 VDGLRVIDASIMPI-----------IVSG----NPNAPTIMIGEKGADMI-KEDWGYV 159
+DG+R+ D M + +V+ A I G AD + K+ + V
Sbjct: 105 IDGIRITDEHTMAVVRKCFLEQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLV 162
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport,
membrane, phosphorylation; 2.80A {Homo sapiens}
Length = 298
Score = 26.1 bits (57), Expect = 5.9
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 11 SHTWLKTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASA 51
+H + R T +R +E L + ++IA +
Sbjct: 192 AHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPS 232
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A*
1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Length = 408
Score = 26.0 bits (58), Expect = 6.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 119 DGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIK 153
GLRV+ + I ++G P A M E GA++I
Sbjct: 16 AGLRVVFSG---IEIAG-PFA-GQMFAEWGAEVIW 45
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase,
guanine exchange factor; 2.10A {Homo sapiens}
Length = 391
Score = 26.1 bits (56), Expect = 7.0
Identities = 13/66 (19%), Positives = 18/66 (27%)
Query: 12 HTWLKTRITLVGQPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMF 71
R L Q F RD G I F + + + L +F
Sbjct: 303 TGDGVARAFLRAQAALFGSYRDALRYKPGEPITFCEESFVKHRSSVMKQFLETAINLQLF 362
Query: 72 ELFSDE 77
+ F D
Sbjct: 363 KQFIDG 368
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial;
active site phosphohistidine residue; HET: NEP GTP;
2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A*
2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Length = 305
Score = 26.0 bits (58), Expect = 7.8
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 142 IMIGEKG-------ADMIKEDWGYVNTKP 163
I+IGE G A+ +K+ +KP
Sbjct: 212 ILIGEIGGNAEENAAEFLKQHNSGPKSKP 240
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 26.1 bits (58), Expect = 8.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 47 VSASAAFKKYNSRPL--LTPMPGCAMFELFSD 76
V A+A+ S L L P GCAM E F D
Sbjct: 224 VVATAS----ESAALQYLAPYAGCAMGEYFRD 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.434
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,814,822
Number of extensions: 166224
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 29
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)