RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4110
(169 letters)
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 89.2 bits (220), Expect = 4e-22
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 89 TIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 148
+ P C M P + VVD RVYGV GLRVID SI P +S + + K
Sbjct: 315 VVDLPVGLCSMMPK-EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKI 373
Query: 149 ADMIKEDW 156
+D I ED+
Sbjct: 374 SDAILEDY 381
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 86.2 bits (212), Expect = 3e-21
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 89 TIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKG 148
I P +G AVVD ++V+G + L ++DA I+P + +GNP + E+
Sbjct: 291 WINLPVGMTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQA 349
Query: 149 ADMI 152
A I
Sbjct: 350 AAKI 353
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 73.4 bits (179), Expect = 2e-16
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 107 AVVDPRLRVYGVDGLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDW 156
VVD +VYG GLRVID SI P VS + + K AD I +D+
Sbjct: 338 GVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDY 387
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 68.5 bits (166), Expect = 1e-14
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 74 FSDEYWECSLRHFTFTIYHPTSTCKMGP-PTDPEAVVDPRLRVYGVDGLRVIDASIMPII 132
+ + +MG + V+ RV+G L + +P
Sbjct: 290 SGFGQLGRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTA 349
Query: 133 VSGNPNAPTIMIGEKGADMIKEDW 156
NP + + K + IK+++
Sbjct: 350 YGANPTLTAMSLAIKSCEYIKQNF 373
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
[TaxId: 5061]}
Length = 196
Score = 65.2 bits (158), Expect = 3e-14
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
P YF + D+ ++A N+S S A + Y + + PG + W +
Sbjct: 127 DPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI---PGDNLAYDADLSAWTEYI 183
Query: 84 RHFTFTIYHPTST 96
+ YH T
Sbjct: 184 PYHFRPNYHGVGT 196
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 196
Score = 64.4 bits (156), Expect = 6e-14
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
P +F + D+ ++A ++++ A K+Y + L PG + + + W +
Sbjct: 127 DPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL---PGYNLVQNATLSQWSDYV 183
Query: 84 RHFTFTIYHPTST 96
+H S+
Sbjct: 184 LQNFRPNWHAVSS 196
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
dulcis) [TaxId: 3755]}
Length = 170
Score = 50.9 bits (121), Expect = 4e-09
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMF-----ELFSDEY 78
+ NY+ + D+ + G++ + ++ A K Y L + + D
Sbjct: 93 KFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAA 152
Query: 79 WECSLRHFTFTIYH 92
+E R + +H
Sbjct: 153 FETFCRESVASYWH 166
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome
cellobiose dehydrogenase (CDH), substrate-binding domain
{Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Length = 181
Score = 38.3 bits (88), Expect = 1e-04
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 11/73 (15%)
Query: 24 QPNYFQHRRDIETLIEGIRIAFNVSASAAFKKYNSRPLLTPMPGCAMFELFSDEYWECSL 83
P + + D L++ + + S +TP + E + +
Sbjct: 120 TPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM-----ITPDVT------QTLEEYVDAY 168
Query: 84 RHFTFTIYHPTST 96
T H S+
Sbjct: 169 DPATMNSNHWVSS 181
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf
complex {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 127
Score = 26.9 bits (59), Expect = 0.74
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 13/63 (20%)
Query: 67 GCAMFELFSDEYWECSLRHFTFTIYHPTSTCKMGPPTDPEAVVDPRLRVYGVDGLRVIDA 126
GC + ++ + C + + GP L + V D
Sbjct: 59 GCVVPFNAAENKFICPCHGSQY---NNQGRVVRGPAPLS-------LALAHC---DVDDG 105
Query: 127 SIM 129
++
Sbjct: 106 KVV 108
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella
typhimurium [TaxId: 90371]}
Length = 309
Score = 26.4 bits (57), Expect = 2.1
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 5/48 (10%)
Query: 120 GLRVIDASIMPIIVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPFDDG 167
R DA + P I D + W F DG
Sbjct: 259 FYRPRDADVAKKYDDAFPKLKLFTI-----DEVFGGWAKAQKDHFADG 301
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 25.7 bits (55), Expect = 3.1
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 97 CKMGPPTDPEAVVDPRLRVYGVDGLRVIDASIMPIIVSGNP 137
+ TD R+ GL V+D S++P V NP
Sbjct: 316 VLLNKATDNFG------RLPEYPGLYVVDGSLVPGNVGVNP 350
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 160
Score = 24.6 bits (53), Expect = 6.5
Identities = 5/36 (13%), Positives = 13/36 (36%)
Query: 132 IVSGNPNAPTIMIGEKGADMIKEDWGYVNTKPFDDG 167
+ S N A + ++ + + + G +G
Sbjct: 4 VFSANSTAACTELAKRITERLGAELGKSVVYQETNG 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.434
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 704,426
Number of extensions: 32821
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 18
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)