BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4112
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 46/246 (18%)
Query: 53 SEYDFXXXXXXXXXXXXANRLSENPKWKVLLLESG-EDENIY-TNIPLLAHF---NSLTH 107
+++D+ A RL+E+P VL+LE+G DEN+ PLLA NS+
Sbjct: 1 ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSI-- 58
Query: 108 FNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GN 166
F+W Y G PRG+ LGGSS ++YM+ RG+ +D+D Y A G+
Sbjct: 59 FDWNYTTTAQA------GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGD 112
Query: 167 KGWGYDSVLKYFLKSE---------NNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
+GW +D++ ++ K+E N + EF+ A +H G + ++ + L ++
Sbjct: 113 EGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPA-VHGTNGSVSISLPGFPTPLDDRV-- 169
Query: 218 AKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSA 277
L T Q E F G+ + G S +++ GQR S+
Sbjct: 170 -----LATT----QEQSEEFFFNPDMGTGHPL-----------GISWSIASVGNGQRSSS 209
Query: 278 NRAYLK 283
+ AYL+
Sbjct: 210 STAYLR 215
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 42/234 (17%)
Query: 53 SEYDFXXXXXXXXXXXXANRLSENPKWKVLLLESG--EDENI-YTNIPLLAHFNSLTHFN 109
S +DF A RL+ENP VL++E+G E+I P A + ++
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 110 WGYK--LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNK 167
W YK + + +++ + + P RGK LGGSS LNY + G+K +D +E G K
Sbjct: 65 WAYKTTMVRRDDYERI------EKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGK 118
Query: 168 GWGYDSVLKYFLKSENNTSEFLDADIHSRE-------GPLKVTNIPYQNLLTEKFTQAKE 220
W +D ++ Y KS D ++S E GP+ ++ + L+ E
Sbjct: 119 EWTWDPLVPYLRKSATYHD---DPRLYSPELEKIGGGGPIPIS---HAELIDEM------ 166
Query: 221 GPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQR 274
P++ LT+ + L IYD +G + T+ +GQR
Sbjct: 167 -------APFRENLTKAWKSMGQPLIENIYDG-----EMDGLTHCCDTIYRGQR 208
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 16/121 (13%)
Query: 70 ANRLSENPKWKVLLLESGE---DENIYTNIPLLAHFNSLT--HFNWGYKLEKNEEHPQCL 124
A RLSE+P +VLL+E+GE D +I+ A + +L ++W Y+ E
Sbjct: 33 AARLSEDPDSRVLLIEAGEEPTDPDIWNP----AAWPALQGRSYDWDYRTEAQA------ 82
Query: 125 GMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGWGYDSVLKYFLKSEN 183
G RG+ +GGSS L+ M Y RG+ D+ + +A+G++ WG+D +L F E+
Sbjct: 83 GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIED 142
Query: 184 N 184
+
Sbjct: 143 H 143
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 70 ANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYND 129
A RL+ENP VL++ESG E+ P++ N+ +G ++ E + L N
Sbjct: 35 AARLTENPNISVLVIESGSYES--DRGPIIEDLNAYGDI-FGSSVDHAYETVE-LATNNQ 90
Query: 130 QCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSE 182
G GLGGS+++N +TR +K D++E GN+GW +D+V Y L++E
Sbjct: 91 TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAE 144
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 54 EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSL--THFNWG 111
E+D+ A RLSE+P V L+E+G D+ + L + L + ++W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWG 170
Y +E PQ G N R K +GG S N I ++D D +EA G GW
Sbjct: 73 YPIE-----PQENG--NSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWN 125
Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQN 209
++ + + E N DA H GP+ + N+P ++
Sbjct: 126 AEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKD 164
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 54 EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSL--THFNWG 111
E+D+ A RLSE+P V L+E+G D+ + L + L + ++W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWG 170
Y +E PQ G N R K +GG S N I ++D D +EA G GW
Sbjct: 73 YPIE-----PQENG--NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWN 125
Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQN 209
++ + + E N DA H GP+ + N+P ++
Sbjct: 126 AEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKD 164
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 54 EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSL--THFNWG 111
E+D+ A RLSE+P V L+E+G D+ + L + L + ++W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWG 170
Y +E PQ G N R K +GG S N I ++D D +EA G GW
Sbjct: 73 YPIE-----PQENG--NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWN 125
Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQN 209
++ + + E N DA H GP+ + N+P ++
Sbjct: 126 AEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKD 164
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 32 YLRQQGLEFRENIFLGNKPILSE-YDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDE 90
YL Q ++ + ++ + + YD+ A +L+ENPK KVL++E G E
Sbjct: 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60
Query: 91 NIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQ----CP--------CPRGKG 138
+ N G +E + Q G DQ P GKG
Sbjct: 61 S-----------------NDGAIIEDPNAYGQIFGTTVDQNYLTVPLINNRTNNIKAGKG 103
Query: 139 LGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSE 182
LGGS+++N +TR +K D++E G +GW +D++ +Y K+E
Sbjct: 104 LGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAE 148
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 54 EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
YD+ A LSE K+KVL+LE G Y N+ LT + Y
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNV--------LTADGFVYN 75
Query: 114 LEKNEE--HPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
L++ ++ P + D RG+ LGG+SI+N +Y R N Y +A W
Sbjct: 76 LQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIY----SASGVDWDM 131
Query: 172 DSVLKYFLKSENNT--------------SEFLDADIHSREG 198
D V + + E+ + FL+A +H G
Sbjct: 132 DLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHG 172
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 54 EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
YD+ A LSE K+KVL+LE G Y N+ LT + Y
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNV--------LTADGFVYN 75
Query: 114 LEKNEE--HPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
L++ ++ P + D RG+ LGG+SI+N +Y R N Y +A W
Sbjct: 76 LQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIY----SASGVDWDM 131
Query: 172 DSVLKYFLKSENNT--------------SEFLDADIHSREG 198
D V + + E+ + FL+A +H G
Sbjct: 132 DLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHG 172
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 54 EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
YD+ A LSE K+KVL+LE G Y N+ LT + Y
Sbjct: 26 SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGTLPTAYPNL--------LTSDGFIYN 75
Query: 114 LEKNEEH--PQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
L++ ++ P + D RG+ LGG+S++N +Y R N K + A+G + W
Sbjct: 76 LQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTK---IFSASGIE-WDM 131
Query: 172 DSV 174
D V
Sbjct: 132 DLV 134
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 164 AGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREG 198
G +GWGYD VL Y S T + A I + G
Sbjct: 180 GGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHG 214
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D IHSRE + T + + TE + Q
Sbjct: 49 VLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQ 92
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D IHSRE + T + + TE + Q
Sbjct: 49 VLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQ 92
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D IHSRE + T + + TE + Q
Sbjct: 49 VLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQ 92
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D IHSRE + T + + TE + Q
Sbjct: 49 VLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQ 92
>pdb|1PCA|A Chain A, Three Dimensional Structure Of Porcine Pancreatic
Procarboxypeptidase A. A Comparison Of The A And B
Zymogens And Their Determinants For Inhibition And
Activation
Length = 403
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D+ IHSRE + + + + +TE + Q
Sbjct: 144 VLKFSTGGSNRPAIWIDSGIHSREWITQASGVWFAKKITENYGQ 187
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D IHSRE + T + + TE + Q
Sbjct: 49 VLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQ 92
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate Binding
To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
Length = 307
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D IHSRE + T + + TE + Q
Sbjct: 49 VLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQ 92
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D IHSRE + T + + TE + Q
Sbjct: 49 VLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTEDYGQ 92
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
VLK+ N + ++D IHSRE + T + + TE + Q
Sbjct: 49 VLKFSTGGSNRPAIWIDLGIHSREWITQATGVWFAKKFTENYGQ 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,480,860
Number of Sequences: 62578
Number of extensions: 352347
Number of successful extensions: 715
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 30
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)