BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4112
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 125/230 (54%), Gaps = 26/230 (11%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
EYDF++IGGG GSVVA+RLSE P+WKVLL+E+G DE + IP + F + + Y+
Sbjct: 64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSM--FLNFIGSDIDYR 121
Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
E CL +C PRGK LGG+S+LN M+Y RGN++DYD + A GN GW Y+
Sbjct: 122 YNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYND 181
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNL 233
VL +F KSE+N LD D E AK G L V PY
Sbjct: 182 VLPFFKKSEDN----LDLDEVGTE------------------YHAKGGLLPVGKFPYNPP 219
Query: 234 LTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
L+ +A ELG+ ++D G + GF Q T G RYS+ RA+L+
Sbjct: 220 LSYAILKAGEELGFSVHDLNGQN--STGFMIAQMTARNGIRYSSARAFLR 267
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 123/230 (53%), Gaps = 26/230 (11%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
EYDF++IGGG GSVVA+RLSE P+WKVLL+E+G DE + IP + F + + Y+
Sbjct: 64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSM--FLNFIGSDIDYR 121
Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
E CL +C PRGK LGG+S++N M+Y RGN++DYD + A GN GW Y
Sbjct: 122 YNTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQD 181
Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNL 233
VL +F KSE+N L+ D E AK G L V PY
Sbjct: 182 VLPFFKKSEDN----LELDAVGTE------------------YHAKGGLLPVGKFPYNPP 219
Query: 234 LTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
L+ +A E+G+ + D G + GF Q T G RYS+ RA+L+
Sbjct: 220 LSYALLKAGEEMGFSVQDLNGQN--STGFMIAQMTARNGIRYSSARAFLR 267
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 121/233 (51%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIPL-LAHFNSLTHFNWG 111
+ D++IIG G GS +A+RLSE+ + V++LE G D + +P LA S+ +NWG
Sbjct: 2 QADYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y L + E H + N + PRGK +GGSS +N M+Y RG+ +D+D +E G KGW Y
Sbjct: 62 Y-LSEPEPH-----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + E HS G E + +GPL V P +
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EDGWRGTDGPLHVQRGPVK 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ + DY G + EGF ++ T +G+R+SA AYLK
Sbjct: 151 NPLFHAFVEAGKQAGFEMTDDYNGSK--QEGFGLMEQTTWRGRRWSAASAYLK 201
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
+ D+VI+G G GS +A RLSE+ ++ V+++E+G D + +P LA S+ +NWG
Sbjct: 2 QADYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y E + N + PRGK +GGSS +N ++Y RG+ +D++ +E G +GW Y
Sbjct: 62 YLSEPEPN------LDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + E HS G E+ + +GPL V P
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGPVS 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F QA + G+ + DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFHAFIQAGAQAGFELTDDYNGSK--QEGFGLMEQTIHNGRRWSAANAYLK 201
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 119/233 (51%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIPL-LAHFNSLTHFNWG 111
+ DFVIIG G GS +A RLSE+ V++LE G D + +P LA S+ +NWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y +E P + N + PRGK +GGSS +N M+Y RG+ +D+D +E G KGW Y
Sbjct: 62 YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL Y+ + E HS G E+ + +GPL V P +
Sbjct: 116 ADVLPYYKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGPVK 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ + DY G + EGF ++ T +G+R+SA AYL+
Sbjct: 151 NPLFHAFIEAGKQAGFEVTEDYNGSK--QEGFGLMEQTTWRGRRWSAASAYLR 201
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 120/233 (51%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIPL-LAHFNSLTHFNWG 111
+ DFVIIG G GS +A RLSE+ + V++LE G D + +P LA S+ +NWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y +E P + N + PRGK +GGSS +N M+Y RG+ +D++ +E G +GW Y
Sbjct: 62 YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL Y+ + E HS G E+ + +GPL V P +
Sbjct: 116 ADVLPYYKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGPVK 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A E G+ + DY G + EGF ++ T +G+R+SA AYL+
Sbjct: 151 NPLFHAFIEAGKEAGFEVTEDYNGSK--QEGFGLMEQTTWRGRRWSAASAYLR 201
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 119/233 (51%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIPL-LAHFNSLTHFNWG 111
+ DFVIIG G GS +A+RLSE+ K V++LE G D + +P LA S+ +NWG
Sbjct: 2 QADFVIIGSGSAGSAMASRLSEDGKHTVIVLEFGGSDVGPFIQMPAALAWPMSMDRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y +E PQ + N + PRGK +GGSS +N M+Y RG+ +D++ +E G +GW Y
Sbjct: 62 YL---SEPEPQ---LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + E HS G E+ + +GPL V +
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVRRGDAR 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ DY G + EGF ++ T G+R+SA AYLK
Sbjct: 151 NPLFHAFIEAGKQAGFEATEDYNGGK--QEGFGLMEQTTWMGRRWSAATAYLK 201
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
+ DFVIIG G GS +A RLSE+ K VL++E+G D + +P LA S+ +NWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y +E P + N + PRGK +GGSS +N M+Y RG+ +D++ +E G GW Y
Sbjct: 62 YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + E HS G E+ + +GPL V +
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGGFT 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFRAFIEAGKQAGFETTDDYNGSK--QEGFGLMEQTIFSGRRWSAANAYLK 201
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
+ DFVIIG G GS +A RLSE+ K VL++E+G D + +P LA S+ +NWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y +E P + N + PRGK +GGSS +N M+Y RG+ +D++ +E G GW Y
Sbjct: 62 YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + E HS G E+ + +GPL V +
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGGFT 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFRAFIEAGKQAGFETTEDYNGSK--QEGFGLMEQTIFAGRRWSAANAYLK 201
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
+ DFVIIG G GS +A RLSE+ K VL++E+G D + +P LA S+ +NWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y +E P + N + PRGK +GGSS +N M+Y RG+ +D++ +E G GW Y
Sbjct: 62 YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + E HS G E+ + +GPL V +
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGGFT 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFRAFVEAGKQAGFETTEDYNGSK--QEGFGLMEQTIFSGRRWSAANAYLK 201
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 116/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFN-SLTHFN 109
EYD++IIG G G+V+A RL+E+P VLLLE+G + + T +P F +N
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKG 168
W Y+ E E H M N + C RGKGLGGSS++N M Y RGN D+D + + G +
Sbjct: 64 WAYETEP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLED 117
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
WGY VL YF K+E T + D H EGP+ V N
Sbjct: 118 WGYRDVLPYFRKAE--TRDIGANDYHGGEGPVSVATPKNDN------------------- 156
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
N+L + A + GY R D G + EGF + T++ +G+R S R YL
Sbjct: 157 ---NVLFQAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPQGRRASTARGYL 207
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 116/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFN-SLTHFN 109
EYD++IIG G G+V+A RL+E+P VLLLE+G + + T +P F +N
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKG 168
W Y+ E E H M N + C RGKGLGGSS++N M Y RGN D+D + + G +
Sbjct: 64 WAYETEP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLED 117
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
WGY VL YF K+E T + D H EGP+ V N
Sbjct: 118 WGYRDVLPYFRKAE--TRDIGANDYHGGEGPVSVATPKNDN------------------- 156
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
N+L + A + GY R D G + EGF + T++ +G+R S R YL
Sbjct: 157 ---NVLFQAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPQGRRASTARGYL 207
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 116/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFN-SLTHFN 109
EYD++IIG G G+V+A RL+E+P VLLLE+G + + T +P F +N
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKG 168
W Y+ E E H M N + C RGKGLGGSS++N M Y RGN D+D + + G +
Sbjct: 64 WAYETEP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLED 117
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
WGY VL YF K+E T + D H EGP+ V N
Sbjct: 118 WGYRDVLPYFRKAE--TRDIGANDYHGGEGPVSVATPKNDN------------------- 156
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
N+L + A + GY R D G + EGF + T++ +G+R S R YL
Sbjct: 157 ---NVLFQAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPQGRRASTARGYL 207
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 118/233 (50%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
+ DFVIIG G GS +A RLSE K V+++E+G D + +P LA S+ +NWG
Sbjct: 2 QADFVIIGSGSAGSALAYRLSEGGKNSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
Y E P+ + N + PRGK +GGSS +N M+Y RG+ +D++ +E G GW Y
Sbjct: 62 YLSE-----PEA-NLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + E HS G E+ + +GPL V +
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGGFT 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L + F +A + G+ DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFQAFVEAGKQAGFETTEDYNGSK--QEGFGLMEQTIFGGRRWSAANAYLK 201
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 116/233 (49%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPLLAHFN-SLTHFNWG 111
E DFVIIG G GS +A RLSE+ ++ V+++E G D +P F ++ ++WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
+ E P G PRGK LGGSS +N M+Y RG+ +DYD + +G +GW Y
Sbjct: 62 FS---TEPEPHIGGR---SLVTPRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + EN++ +EG + TN GPL +
Sbjct: 116 ADVLPYFKRMENSSG--------GQEG-WRGTN----------------GPLYIQRGKRD 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A E G+ + DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFHAFVEAGHEAGFEVTEDYNGEK--QEGFGPMEQTIHNGRRWSAANAYLK 201
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 117/232 (50%), Gaps = 36/232 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIP-LLAHFNSLTHFNWGY 112
YD++I+G G G V+A+RLSE+ + +VLLLE+G D++I+ +P L++ + + W +
Sbjct: 5 YDYIIVGAGSAGCVLADRLSESGQHQVLLLEAGGSDKSIFIQMPTALSYPMNTEKYAWQF 64
Query: 113 KLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYD 172
+ E G+ Q CPRGK LGGSS +N M+Y RG+ D+D +EA G KGW Y
Sbjct: 65 ETVAEE------GLDGRQLHCPRGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQ 118
Query: 173 SVLKYFLKSENNTSEFLDAD-IHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
+ L YF K+E T AD GP+ N L
Sbjct: 119 ACLPYFRKAETWTG---GADEYRGGSGPVGTCNGNDMKL--------------------- 154
Query: 232 NLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F +A + GY DY G + EGF + T+ KG R S + AYL
Sbjct: 155 NPLYQAFIEAGKDAGYPETQDYNGYQ--QEGFGPMHMTVDKGVRASTSNAYL 204
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 117/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHQGLER 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H +GP+ VT T+
Sbjct: 119 WTYLDCLPYFRKAE--TRDVGPNDYHGGDGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E +A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGANPLFEAMVEAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|A9AMZ9|BETA_BURM1 Choline dehydrogenase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=betA PE=3 SV=1
Length = 566
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 117/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHQGLEN 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H +GP+ VT T+
Sbjct: 119 WTYLDCLPYFKKAE--TRDIGPNDYHGGDGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E +A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGVNPLFEAMVEAGVQAGYPRTEDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 116/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEN 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H +GP+ VT T+
Sbjct: 119 WTYLDCLPYFKKAE--TRDVGPNDYHGGDGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGVNPLFEAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|Q0B711|BETA_BURCM Choline dehydrogenase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=betA PE=3 SV=1
Length = 566
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 115/236 (48%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEN 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H GP+ VT T+
Sbjct: 119 WTYLDCLPYFKKAE--TRDVGPNDYHGGNGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGANPLFEAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 115/236 (48%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEN 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H GP+ VT T+
Sbjct: 119 WTYLDCLPYFKKAE--TRDVGPNDYHGGSGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGVNPLFEAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 115/237 (48%), Gaps = 39/237 (16%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFN-SLTHF 108
+EYD++IIG G G+V+A RL+E+ VLLLE+G + + T +P F +
Sbjct: 5 NEYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 64
Query: 109 NWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNK 167
NW YK + P+ M N + C RGKGLGGSS++N M Y RGN DYD + + G +
Sbjct: 65 NWAYKTD-----PEPF-MNNRRMDCGRGKGLGGSSLINGMCYIRGNAMDYDNWASMPGLE 118
Query: 168 GWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTN 227
W Y L YF K+E T + D H EGPL+VT N
Sbjct: 119 DWTYLDCLPYFRKAE--TRDIGPNDYHGGEGPLRVTTPKAGN------------------ 158
Query: 228 IPYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
N L +A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 159 ----NELFAAMVEAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRSSTARGYL 209
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 115/236 (48%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEN 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H GP+ VT T+
Sbjct: 119 WTYLDCLPYFKKAE--TRDVGPNDYHGGSGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGVNPLFEAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 115/236 (48%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEN 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H GP+ VT T+
Sbjct: 119 WTYLDCLPYFKKAE--TRDVGPNDYHGGSGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGVNPLFEAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 115/236 (48%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEN 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H GP+ VT T+
Sbjct: 119 WTYLDCLPYFKKAE--TRDVGPNDYHGGSGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGVNPLFEAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 117/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
E+D++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EFDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLED 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H +GP+ VT T+
Sbjct: 119 WTYLDCLPYFRKAE--TRDVGPNDYHGGDGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E +A + GY R D G + EGF + T++ +G+R S R YL
Sbjct: 155 PGVNPLFEAMVEAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPRGRRASTARGYL 208
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 115/236 (48%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
EYD++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWSTHKGLEN 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H GP+ VT T+
Sbjct: 119 WTYLDCLPYFKKAE--TRDVGPNDYHGGNGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 PGVNPLFEAMVDAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 208
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 115/233 (49%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPLLAHFN-SLTHFNWG 111
E DFVIIG G GS +A RLSEN ++ V+++E G D +P F ++ ++WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSENGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
+ +E P G PRGK LGGSS +N M+Y RG+ D+D + +G +GW Y
Sbjct: 62 FS---SEPEPHIGGR---SLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + EN+ +EG + TN GPL V
Sbjct: 116 ADVLPYFKRMENSQG--------GQEG-WRGTN----------------GPLYVQRGKRD 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ + DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFHAFVEAGHQAGFEVTDDYNGEK--QEGFGPMEQTIHNGRRWSAANAYLK 201
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 115/237 (48%), Gaps = 39/237 (16%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFN-SLTHF 108
+EYD++IIG G G+V+A RL+E+ VLLLE+G + + T +P F +
Sbjct: 5 NEYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 64
Query: 109 NWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNK 167
NW YK + P+ M N + C RGKGLGGSS++N M Y RGN DYD + + G +
Sbjct: 65 NWAYKTD-----PEPF-MNNRRMDCGRGKGLGGSSLINGMCYIRGNAMDYDNWASMPGLE 118
Query: 168 GWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTN 227
W Y L YF K+E T + D H +GPL+VT N
Sbjct: 119 DWTYLDCLPYFRKAE--TRDIGPNDYHGGDGPLRVTTPKAGN------------------ 158
Query: 228 IPYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
N L +A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 159 ----NELFAAMVEAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPKGRRSSTARGYL 209
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 114/233 (48%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIP-LLAHFNSLTHFNWG 111
E DFVIIG G GS +A RLSE+ K V+++E G D +P L+ +++ ++WG
Sbjct: 3 EADFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIGPLIQMPSALSIPLNMSLYDWG 62
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
+ +E P G PRGK +GGSS +N M+Y RG+ +D+D + G GWG+
Sbjct: 63 FA---SEPEPHLGGRV---LATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGF 116
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + E+N E + GPL V +
Sbjct: 117 ADVLPYFKRMEDNDG-------------------------GEDGWRGHGGPLHVQRGSRK 151
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ + DY G + EGF ++ T+S G+R+SA AYLK
Sbjct: 152 NPLYGAFVEAGRQAGFELTDDYNGSK--QEGFGPMEQTISGGRRWSAASAYLK 202
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 114/236 (48%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFN-SLTHFN 109
EYD++IIG G G+V+A RL+E+ VLLLE+G + + T +P F +N
Sbjct: 2 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRMDFRTQMPAALAFPLQGRRYN 61
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKG 168
W Y+ + E H M N + C RGKGLGGSS++N M Y RGN D+D + +A G +
Sbjct: 62 WAYETDP-EPH-----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWAKAPGLED 115
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H +GP+ VT N
Sbjct: 116 WSYLDCLPYFRKAE--TRDIGPNDFHGGDGPVSVTTPKAGN------------------- 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
N L +A + GY R D G + EGF + T++ KG+R S R YL
Sbjct: 155 ---NELFHAMVEAGVQAGYPRTEDLNGYQ--QEGFGPMDRTVTPKGRRASTARGYL 205
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 117/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
E+D++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M + + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGLED 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H +GP+ VT T+
Sbjct: 119 WAYLDCLPYFRKAE--TRDVGPNDYHGGDGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E +A + GY R D G + EGF + T++ +G+R S R YL
Sbjct: 155 PGVNPLFEAMVEAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPRGRRASTARGYL 208
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 115/233 (49%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPLLAHFN-SLTHFNWG 111
E DFVIIG G GS +A RLSE+ ++ V+++E G D +P F ++ ++WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
+ +E P G PRGK LGGSS +N M+Y RG+ D+D + +G +GW Y
Sbjct: 62 FS---SEPEPHIRGR---SLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + EN+ +EG + TN GPL V
Sbjct: 116 ADVLPYFKRMENSQG--------GQEG-WRGTN----------------GPLYVQRGKRD 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ + DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFHAFVEAGHQAGFEVTDDYNGEK--QEGFGPMEQTIHNGRRWSAANAYLK 201
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 117/236 (49%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFN 109
E+D++I G G G+V+A RL+E+P VLLLE+G + + T +P LA+ +N
Sbjct: 5 EFDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDYRFDFRTQMPAALAYPLQGRRYN 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y+ + E H M + + C RGKGLGGSS++N M Y RGN DYD + G +
Sbjct: 65 WAYETDP-EPH-----MNHRRMECGRGKGLGGSSLINGMCYIRGNALDYDNWATHKGLED 118
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y L YF K+E T + D H +GP+ VT T+
Sbjct: 119 WAYLDCLPYFRKAE--TRDVGPNDYHGGDGPVSVT----------------------TSK 154
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
P N L E +A + GY R D G + EGF + T++ +G+R S R YL
Sbjct: 155 PGVNPLFEAMVEAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPRGRRASTARGYL 208
>sp|Q8NUM0|BETA_STAAW Choline dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=betA
PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|Q6G664|BETA_STAAS Choline dehydrogenase OS=Staphylococcus aureus (strain MSSA476)
GN=betA PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|A8Z5A4|BETA_STAAT Choline dehydrogenase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=betA PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|Q6GDJ1|BETA_STAAR Choline dehydrogenase OS=Staphylococcus aureus (strain MRSA252)
GN=betA PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|P60337|BETA_STAAN Choline dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=betA PE=1 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|P60336|BETA_STAAM Choline dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=betA PE=1 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|A6QK99|BETA_STAAE Choline dehydrogenase OS=Staphylococcus aureus (strain Newman)
GN=betA PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|Q5HCU1|BETA_STAAC Choline dehydrogenase OS=Staphylococcus aureus (strain COL) GN=betA
PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|Q2YWJ5|BETA_STAAB Choline dehydrogenase OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=betA PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|A5IW37|BETA_STAA9 Choline dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=betA
PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|Q2FV11|BETA_STAA8 Choline dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325)
GN=betA PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|Q2FDP9|BETA_STAA3 Choline dehydrogenase OS=Staphylococcus aureus (strain USA300)
GN=betA PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|A6U4Z2|BETA_STAA2 Choline dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=betA
PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|A7X6Z3|BETA_STAA1 Choline dehydrogenase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=betA PE=3 SV=1
Length = 569
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHF-NW 110
YD+VIIGGG GSV+ NRLSE+ +VL+LE+G + +++ +P F S F +W
Sbjct: 8 YDYVIIGGGSAGSVLGNRLSEDKDKEVLVLEAGRSDYFWDLFIQMPAALMFPSGNKFYDW 67
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
Y +E P G + RGK LGGSS +N MIY RGN DY+ + E G + W
Sbjct: 68 IY---STDEEPHMGGR---KVAHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETW 121
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
+ L YF K E PY +KF + +GP+K+ P
Sbjct: 122 DFAHCLPYFKKLEKTYGA-----------------APY-----DKF-RGHDGPIKLKRGP 158
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
N L + F A E GY + D G EGF S + +G+R SA+RAYL
Sbjct: 159 ATNPLFQSFFDAGVEAGYHKTPDVNGFR--QEGFGPFDSQVHRGRRMSASRAYL 210
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 115/233 (49%), Gaps = 36/233 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPLLAHFN-SLTHFNWG 111
E DFVIIG G GS +A RLSE+ ++ V+++E G D +P F ++ ++WG
Sbjct: 2 EADFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYGVPDVGPLIQMPAALSFPMNMETYDWG 61
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
+ +E P G PRGK LGGSS +N M+Y RG+ D+D + +G +GW Y
Sbjct: 62 FS---SEPEPHIGGR---SLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAY 115
Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
VL YF + EN+ +EG + TN GPL V
Sbjct: 116 ADVLPYFKRMENSQG--------GQEG-WRGTN----------------GPLYVQRGKRD 150
Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N L F +A + G+ + DY G + EGF ++ T+ G+R+SA AYLK
Sbjct: 151 NPLFHAFVEAGHQAGFEVADDYNGEK--QEGFGPMEQTIHNGRRWSAANAYLK 201
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 113/236 (47%), Gaps = 39/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFN-SLTHFN 109
EYD++IIG G G+V+A RL+E+P VLLLE+G + + T +P F +N
Sbjct: 4 EYDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKG 168
W Y+ E M N + C RGKGLGGSS++N M Y RGN D+D + + G +
Sbjct: 64 WAYETEPEPY------MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLED 117
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W Y VL YF K+E T + D H +GP+ V N
Sbjct: 118 WSYRDVLPYFRKAE--TRDIGANDYHGGDGPVSVATPKNDN------------------- 156
Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYL 282
N+L +A + GY R D G + EGF + T++ +G+R S R YL
Sbjct: 157 ---NVLFHAMVEAGVQAGYPRTDDLNGYQ--QEGFGPMDRTVTPRGRRASTARGYL 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,740,153
Number of Sequences: 539616
Number of extensions: 4786716
Number of successful extensions: 12093
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 11647
Number of HSP's gapped (non-prelim): 182
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)