Query psy4112
Match_columns 284
No_of_seqs 278 out of 1699
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:18:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 1.5E-47 3.2E-52 375.9 18.7 207 51-284 54-261 (623)
2 PRK02106 choline dehydrogenase 100.0 1.9E-37 4.1E-42 308.9 16.6 200 52-284 3-209 (560)
3 TIGR01810 betA choline dehydro 100.0 2.5E-37 5.4E-42 306.2 15.5 195 56-283 1-201 (532)
4 COG2303 BetA Choline dehydroge 100.0 1.1E-36 2.5E-41 302.2 15.7 202 51-284 4-211 (542)
5 PF00732 GMC_oxred_N: GMC oxid 100.0 1.1E-36 2.4E-41 279.0 11.6 196 55-283 1-200 (296)
6 PLN02785 Protein HOTHEAD 99.9 6.4E-27 1.4E-31 234.3 12.3 170 52-279 53-225 (587)
7 TIGR02462 pyranose_ox pyranose 99.3 2.2E-12 4.7E-17 128.4 8.9 125 55-188 1-164 (544)
8 COG0644 FixC Dehydrogenases (f 98.1 2.8E-06 6E-11 81.6 4.8 37 53-90 2-38 (396)
9 COG2081 Predicted flavoprotein 98.1 8.3E-06 1.8E-10 77.8 7.5 39 53-92 2-40 (408)
10 KOG1298|consensus 98.0 6.3E-06 1.4E-10 78.3 4.9 39 51-90 42-80 (509)
11 PRK10157 putative oxidoreducta 98.0 7E-06 1.5E-10 79.7 4.8 37 53-90 4-40 (428)
12 PRK10015 oxidoreductase; Provi 98.0 8.4E-06 1.8E-10 79.3 4.9 37 53-90 4-40 (429)
13 PF01946 Thi4: Thi4 family; PD 97.9 1E-05 2.2E-10 71.7 3.4 36 53-89 16-51 (230)
14 TIGR02032 GG-red-SF geranylger 97.8 1.9E-05 4.1E-10 71.2 4.7 35 55-90 1-35 (295)
15 PLN02985 squalene monooxygenas 97.8 7.7E-05 1.7E-09 74.4 8.7 38 51-89 40-77 (514)
16 PF01494 FAD_binding_3: FAD bi 97.8 2.3E-05 4.9E-10 72.1 4.6 36 54-90 1-36 (356)
17 TIGR00292 thiazole biosynthesi 97.8 2.6E-05 5.6E-10 70.9 4.6 37 53-90 20-56 (254)
18 PF03486 HI0933_like: HI0933-l 97.8 2.2E-05 4.7E-10 76.1 4.3 36 55-91 1-36 (409)
19 PLN00093 geranylgeranyl diphos 97.8 3.3E-05 7.1E-10 75.8 5.5 39 50-89 35-73 (450)
20 TIGR02023 BchP-ChlP geranylger 97.8 2.4E-05 5.2E-10 74.7 4.3 32 55-87 1-32 (388)
21 PRK04176 ribulose-1,5-biphosph 97.8 3.1E-05 6.8E-10 70.4 4.7 37 52-89 23-59 (257)
22 PF13450 NAD_binding_8: NAD(P) 97.7 4E-05 8.7E-10 55.6 4.2 32 59-91 1-32 (68)
23 COG1635 THI4 Ribulose 1,5-bisp 97.7 2.9E-05 6.2E-10 69.0 3.8 36 53-89 29-64 (262)
24 PRK08274 tricarballylate dehyd 97.7 3.6E-05 7.8E-10 75.3 4.9 36 52-88 2-37 (466)
25 PRK11259 solA N-methyltryptoph 97.7 3.9E-05 8.5E-10 72.3 4.7 36 53-89 2-37 (376)
26 PF01266 DAO: FAD dependent ox 97.7 3.9E-05 8.5E-10 70.6 4.4 32 56-88 1-32 (358)
27 TIGR01373 soxB sarcosine oxida 97.7 5.2E-05 1.1E-09 72.6 5.3 44 45-88 21-65 (407)
28 PRK07608 ubiquinone biosynthes 97.7 4.9E-05 1.1E-09 72.0 4.9 37 53-90 4-40 (388)
29 PRK07364 2-octaprenyl-6-methox 97.7 5.1E-05 1.1E-09 72.6 5.1 38 52-90 16-53 (415)
30 PTZ00363 rab-GDP dissociation 97.7 4.4E-05 9.6E-10 74.8 4.7 38 52-90 2-39 (443)
31 PRK08020 ubiF 2-octaprenyl-3-m 97.7 4.7E-05 1E-09 72.3 4.7 36 52-88 3-38 (391)
32 TIGR01377 soxA_mon sarcosine o 97.7 4.7E-05 1E-09 71.8 4.4 34 55-89 1-34 (380)
33 PRK13369 glycerol-3-phosphate 97.6 5.4E-05 1.2E-09 75.0 5.0 38 51-89 3-40 (502)
34 PF05834 Lycopene_cycl: Lycope 97.6 5.2E-05 1.1E-09 72.4 4.6 34 56-90 1-36 (374)
35 PLN02463 lycopene beta cyclase 97.6 6.5E-05 1.4E-09 73.7 5.2 38 51-89 25-62 (447)
36 PRK12266 glpD glycerol-3-phosp 97.6 5.6E-05 1.2E-09 75.2 4.8 37 52-89 4-40 (508)
37 PRK08010 pyridine nucleotide-d 97.6 6E-05 1.3E-09 73.3 4.8 35 53-88 2-36 (441)
38 COG1233 Phytoene dehydrogenase 97.6 5.7E-05 1.2E-09 74.7 4.4 37 53-90 2-38 (487)
39 PRK09126 hypothetical protein; 97.6 6.3E-05 1.4E-09 71.5 4.6 35 54-89 3-37 (392)
40 TIGR03364 HpnW_proposed FAD de 97.6 6.4E-05 1.4E-09 70.8 4.6 34 55-89 1-34 (365)
41 PRK08773 2-octaprenyl-3-methyl 97.6 7.1E-05 1.5E-09 71.3 4.7 37 52-89 4-40 (392)
42 PRK08013 oxidoreductase; Provi 97.6 7.6E-05 1.6E-09 71.6 4.9 35 54-89 3-37 (400)
43 PRK07494 2-octaprenyl-6-methox 97.6 8E-05 1.7E-09 70.7 5.0 37 52-89 5-41 (388)
44 PF00890 FAD_binding_2: FAD bi 97.6 6.7E-05 1.5E-09 72.0 4.5 34 56-90 1-34 (417)
45 PRK06116 glutathione reductase 97.6 7.5E-05 1.6E-09 72.8 4.8 34 53-87 3-36 (450)
46 PRK07045 putative monooxygenas 97.6 7.5E-05 1.6E-09 71.0 4.7 37 53-90 4-40 (388)
47 TIGR02028 ChlP geranylgeranyl 97.6 7E-05 1.5E-09 72.1 4.4 34 55-89 1-34 (398)
48 PRK05714 2-octaprenyl-3-methyl 97.6 8.3E-05 1.8E-09 71.2 4.7 34 54-88 2-35 (405)
49 COG0562 Glf UDP-galactopyranos 97.6 8.3E-05 1.8E-09 69.3 4.4 36 54-90 1-36 (374)
50 PRK07251 pyridine nucleotide-d 97.6 8.6E-05 1.9E-09 72.1 4.8 35 53-88 2-36 (438)
51 TIGR01790 carotene-cycl lycope 97.6 8.3E-05 1.8E-09 70.6 4.6 34 56-90 1-34 (388)
52 TIGR01988 Ubi-OHases Ubiquinon 97.5 8.8E-05 1.9E-09 69.8 4.7 34 56-90 1-34 (385)
53 TIGR01421 gluta_reduc_1 glutat 97.5 7.8E-05 1.7E-09 72.9 4.5 34 53-87 1-34 (450)
54 PRK12409 D-amino acid dehydrog 97.5 8.2E-05 1.8E-09 71.3 4.4 34 55-89 2-35 (410)
55 PRK11728 hydroxyglutarate oxid 97.5 8.2E-05 1.8E-09 71.1 4.4 36 54-89 2-38 (393)
56 PLN02661 Putative thiazole syn 97.5 7.4E-05 1.6E-09 71.0 4.0 39 52-90 90-128 (357)
57 TIGR00031 UDP-GALP_mutase UDP- 97.5 9.4E-05 2E-09 71.0 4.7 35 55-90 2-36 (377)
58 PRK06185 hypothetical protein; 97.5 9.9E-05 2.1E-09 70.5 4.6 37 52-89 4-40 (407)
59 TIGR03329 Phn_aa_oxid putative 97.5 9.9E-05 2.1E-09 72.3 4.5 36 53-88 23-59 (460)
60 PRK06370 mercuric reductase; V 97.5 0.00011 2.4E-09 71.9 4.9 36 52-88 3-38 (463)
61 PRK08849 2-octaprenyl-3-methyl 97.5 0.00012 2.6E-09 69.7 4.8 34 54-88 3-36 (384)
62 PRK11101 glpA sn-glycerol-3-ph 97.5 0.00011 2.4E-09 73.7 4.7 35 53-88 5-39 (546)
63 PRK07121 hypothetical protein; 97.5 0.00012 2.6E-09 72.3 4.7 36 53-89 19-54 (492)
64 PRK07333 2-octaprenyl-6-methox 97.5 0.00012 2.6E-09 69.7 4.6 36 54-89 1-37 (403)
65 PRK05976 dihydrolipoamide dehy 97.5 0.00012 2.7E-09 71.8 4.8 35 53-88 3-37 (472)
66 TIGR01424 gluta_reduc_2 glutat 97.5 0.00011 2.3E-09 71.7 4.3 33 54-87 2-34 (446)
67 PRK05192 tRNA uridine 5-carbox 97.5 0.00012 2.5E-09 74.3 4.5 35 53-88 3-37 (618)
68 PF12831 FAD_oxidored: FAD dep 97.5 0.00011 2.4E-09 71.4 4.3 34 56-90 1-34 (428)
69 TIGR02730 carot_isom carotene 97.5 0.00013 2.7E-09 72.1 4.6 35 55-90 1-35 (493)
70 KOG0029|consensus 97.5 0.00014 2.9E-09 72.4 4.8 40 50-90 11-50 (501)
71 PRK11445 putative oxidoreducta 97.5 0.00012 2.6E-09 69.0 4.3 34 54-89 1-34 (351)
72 TIGR01292 TRX_reduct thioredox 97.4 0.00013 2.9E-09 66.0 4.4 33 55-88 1-33 (300)
73 PRK05732 2-octaprenyl-6-methox 97.4 0.00014 3E-09 69.0 4.6 35 53-87 2-38 (395)
74 TIGR01350 lipoamide_DH dihydro 97.4 0.00014 3E-09 70.9 4.6 32 54-86 1-32 (461)
75 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.00015 3.2E-09 68.6 4.6 34 56-90 1-35 (382)
76 PRK07804 L-aspartate oxidase; 97.4 0.00019 4E-09 72.0 5.6 39 51-90 13-51 (541)
77 PLN02697 lycopene epsilon cycl 97.4 0.00014 2.9E-09 72.9 4.5 36 52-88 106-141 (529)
78 PRK05249 soluble pyridine nucl 97.4 0.00015 3.3E-09 70.7 4.7 35 53-88 4-38 (461)
79 PRK06481 fumarate reductase fl 97.4 0.00015 3.3E-09 72.0 4.7 38 52-90 59-96 (506)
80 PLN02464 glycerol-3-phosphate 97.4 0.00015 3.2E-09 74.0 4.7 36 52-88 69-104 (627)
81 PRK06292 dihydrolipoamide dehy 97.4 0.00016 3.5E-09 70.6 4.8 34 53-87 2-35 (460)
82 PRK08850 2-octaprenyl-6-methox 97.4 0.00016 3.5E-09 69.3 4.7 34 53-87 3-36 (405)
83 PRK08244 hypothetical protein; 97.4 0.00016 3.6E-09 71.2 4.7 36 54-90 2-37 (493)
84 PRK06416 dihydrolipoamide dehy 97.4 0.00016 3.4E-09 70.7 4.5 35 53-88 3-37 (462)
85 TIGR01789 lycopene_cycl lycope 97.4 0.00015 3.4E-09 69.2 4.3 34 56-89 1-35 (370)
86 TIGR01320 mal_quin_oxido malat 97.4 0.00015 3.3E-09 71.7 4.4 35 55-89 1-36 (483)
87 TIGR01989 COQ6 Ubiquinone bios 97.4 0.00017 3.7E-09 70.1 4.7 34 55-88 1-37 (437)
88 PRK06115 dihydrolipoamide dehy 97.4 0.00017 3.7E-09 70.9 4.6 32 54-86 3-34 (466)
89 PRK05257 malate:quinone oxidor 97.4 0.00017 3.6E-09 71.7 4.4 38 52-89 3-41 (494)
90 PRK01747 mnmC bifunctional tRN 97.4 0.00021 4.7E-09 73.2 5.2 34 54-88 260-293 (662)
91 TIGR03143 AhpF_homolog putativ 97.4 0.0002 4.3E-09 72.0 4.8 35 53-88 3-37 (555)
92 PRK06617 2-octaprenyl-6-methox 97.4 0.0002 4.3E-09 68.1 4.6 34 54-88 1-34 (374)
93 PRK06184 hypothetical protein; 97.4 0.00021 4.6E-09 70.6 4.9 37 53-90 2-38 (502)
94 PTZ00058 glutathione reductase 97.4 0.00038 8.3E-09 70.2 6.8 35 52-87 46-80 (561)
95 PRK12834 putative FAD-binding 97.3 0.00021 4.6E-09 71.6 4.8 35 53-88 3-37 (549)
96 TIGR02053 MerA mercuric reduct 97.3 0.0002 4.3E-09 70.0 4.5 33 55-88 1-33 (463)
97 PLN02576 protoporphyrinogen ox 97.3 0.00021 4.5E-09 70.3 4.7 38 52-90 10-48 (496)
98 PRK12837 3-ketosteroid-delta-1 97.3 0.0002 4.4E-09 71.2 4.5 35 53-89 6-40 (513)
99 COG0665 DadA Glycine/D-amino a 97.3 0.00024 5.3E-09 67.0 4.8 38 52-90 2-39 (387)
100 PRK07818 dihydrolipoamide dehy 97.3 0.00023 5.1E-09 69.7 4.8 34 53-87 3-36 (466)
101 PTZ00139 Succinate dehydrogena 97.3 0.00022 4.8E-09 72.6 4.7 39 51-90 26-64 (617)
102 COG0654 UbiH 2-polyprenyl-6-me 97.3 0.00022 4.8E-09 68.2 4.4 33 54-87 2-34 (387)
103 PRK07190 hypothetical protein; 97.3 0.00023 5E-09 70.5 4.7 37 53-90 4-40 (487)
104 PRK08243 4-hydroxybenzoate 3-m 97.3 0.00022 4.8E-09 68.1 4.4 35 54-89 2-36 (392)
105 PLN02268 probable polyamine ox 97.3 0.00024 5.1E-09 68.7 4.6 34 56-90 2-35 (435)
106 PRK07208 hypothetical protein; 97.3 0.00028 6E-09 69.1 4.9 38 52-90 2-39 (479)
107 PRK06467 dihydrolipoamide dehy 97.3 0.00027 5.8E-09 69.6 4.8 35 53-88 3-37 (471)
108 PRK13748 putative mercuric red 97.3 0.00026 5.6E-09 70.9 4.7 34 53-87 97-130 (561)
109 PRK06996 hypothetical protein; 97.3 0.00031 6.6E-09 67.3 5.0 38 51-88 8-48 (398)
110 PRK06834 hypothetical protein; 97.3 0.00027 5.9E-09 69.9 4.7 36 53-89 2-37 (488)
111 PRK06847 hypothetical protein; 97.3 0.00031 6.6E-09 66.2 4.8 36 53-89 3-38 (375)
112 TIGR02733 desat_CrtD C-3',4' d 97.3 0.00028 6.1E-09 69.5 4.7 35 55-90 2-36 (492)
113 TIGR01813 flavo_cyto_c flavocy 97.3 0.00027 5.8E-09 68.6 4.4 34 56-90 1-35 (439)
114 COG0492 TrxB Thioredoxin reduc 97.3 0.00029 6.3E-09 65.8 4.4 34 53-87 2-36 (305)
115 PRK14694 putative mercuric red 97.3 0.00028 6E-09 69.3 4.4 35 53-88 5-39 (468)
116 PTZ00383 malate:quinone oxidor 97.3 0.00032 6.8E-09 69.8 4.8 37 52-88 43-80 (497)
117 PRK13339 malate:quinone oxidor 97.3 0.00029 6.2E-09 70.0 4.5 35 52-86 4-39 (497)
118 PRK06753 hypothetical protein; 97.3 0.0003 6.5E-09 66.3 4.4 34 56-90 2-35 (373)
119 PRK07588 hypothetical protein; 97.2 0.00031 6.7E-09 66.9 4.5 34 56-90 2-35 (391)
120 PRK06327 dihydrolipoamide dehy 97.2 0.00032 6.9E-09 69.0 4.6 33 53-86 3-35 (475)
121 PRK11883 protoporphyrinogen ox 97.2 0.00031 6.7E-09 67.7 4.3 34 56-90 2-37 (451)
122 TIGR00562 proto_IX_ox protopor 97.2 0.00033 7.2E-09 68.0 4.6 37 54-90 2-41 (462)
123 TIGR02360 pbenz_hydroxyl 4-hyd 97.2 0.00033 7.1E-09 67.1 4.4 35 54-89 2-36 (390)
124 PTZ00367 squalene epoxidase; P 97.2 0.00036 7.8E-09 70.5 4.7 35 53-88 32-66 (567)
125 PRK06183 mhpA 3-(3-hydroxyphen 97.2 0.00047 1E-08 68.8 5.4 38 52-90 8-45 (538)
126 PRK00711 D-amino acid dehydrog 97.2 0.00035 7.6E-09 66.8 4.3 33 56-89 2-34 (416)
127 PRK12842 putative succinate de 97.2 0.00039 8.4E-09 70.2 4.7 36 53-89 8-43 (574)
128 PRK12835 3-ketosteroid-delta-1 97.2 0.00038 8.2E-09 70.5 4.5 37 52-89 9-45 (584)
129 PRK08163 salicylate hydroxylas 97.2 0.00044 9.5E-09 65.7 4.7 36 54-90 4-39 (396)
130 PRK07236 hypothetical protein; 97.2 0.00044 9.5E-09 65.9 4.7 36 53-89 5-40 (386)
131 PRK06452 sdhA succinate dehydr 97.2 0.00037 8.1E-09 70.2 4.4 36 53-89 4-39 (566)
132 PRK08958 sdhA succinate dehydr 97.2 0.0004 8.8E-09 70.3 4.6 36 53-89 6-41 (588)
133 PRK07803 sdhA succinate dehydr 97.2 0.00037 8.1E-09 71.1 4.3 36 53-89 7-42 (626)
134 PRK09078 sdhA succinate dehydr 97.2 0.00038 8.3E-09 70.6 4.3 36 53-89 11-46 (598)
135 PRK07057 sdhA succinate dehydr 97.2 0.00039 8.4E-09 70.5 4.4 36 53-89 11-46 (591)
136 PRK06175 L-aspartate oxidase; 97.1 0.00043 9.2E-09 67.5 4.4 36 53-90 3-38 (433)
137 PRK06854 adenylylsulfate reduc 97.1 0.0004 8.7E-09 70.6 4.4 37 53-89 10-47 (608)
138 PRK07233 hypothetical protein; 97.1 0.00049 1.1E-08 65.8 4.6 34 56-90 1-34 (434)
139 PRK06126 hypothetical protein; 97.1 0.00048 1E-08 68.8 4.7 38 52-90 5-42 (545)
140 PF07992 Pyr_redox_2: Pyridine 97.1 0.00058 1.3E-08 58.3 4.5 33 56-89 1-33 (201)
141 PTZ00052 thioredoxin reductase 97.1 0.00045 9.7E-09 68.6 4.3 32 54-86 5-36 (499)
142 KOG2415|consensus 97.1 0.00043 9.3E-09 66.7 3.9 39 52-90 74-117 (621)
143 PRK08294 phenol 2-monooxygenas 97.1 0.00058 1.3E-08 69.8 5.1 40 51-90 29-68 (634)
144 PRK08132 FAD-dependent oxidore 97.1 0.00052 1.1E-08 68.6 4.7 38 52-90 21-58 (547)
145 PLN02507 glutathione reductase 97.1 0.00046 1E-08 68.5 4.3 34 52-86 23-56 (499)
146 PRK08275 putative oxidoreducta 97.1 0.00047 1E-08 69.3 4.4 37 53-89 8-45 (554)
147 TIGR02734 crtI_fam phytoene de 97.1 0.00044 9.4E-09 68.3 4.1 33 57-90 1-33 (502)
148 PF13738 Pyr_redox_3: Pyridine 97.1 0.00054 1.2E-08 58.7 4.1 32 58-90 1-33 (203)
149 PRK08401 L-aspartate oxidase; 97.1 0.00051 1.1E-08 67.5 4.4 34 55-89 2-35 (466)
150 PLN00128 Succinate dehydrogena 97.1 0.00049 1.1E-08 70.4 4.4 36 53-89 49-84 (635)
151 TIGR01423 trypano_reduc trypan 97.1 0.00051 1.1E-08 68.0 4.3 33 53-86 2-35 (486)
152 PRK05945 sdhA succinate dehydr 97.1 0.00051 1.1E-08 69.4 4.2 37 53-89 2-39 (575)
153 PRK12844 3-ketosteroid-delta-1 97.0 0.00064 1.4E-08 68.4 4.7 36 53-89 5-40 (557)
154 PRK07573 sdhA succinate dehydr 97.0 0.00072 1.6E-08 69.2 5.1 35 53-88 34-68 (640)
155 PRK07538 hypothetical protein; 97.0 0.00062 1.3E-08 65.5 4.4 34 56-90 2-35 (413)
156 PLN02676 polyamine oxidase 97.0 0.0014 3.1E-08 64.9 7.0 38 52-90 24-62 (487)
157 PRK08626 fumarate reductase fl 97.0 0.00058 1.3E-08 70.1 4.3 37 53-90 4-40 (657)
158 TIGR01812 sdhA_frdA_Gneg succi 97.0 0.00059 1.3E-08 68.6 4.3 33 56-89 1-33 (566)
159 PRK10262 thioredoxin reductase 97.0 0.00068 1.5E-08 62.9 4.4 35 52-87 4-38 (321)
160 PRK08641 sdhA succinate dehydr 97.0 0.00064 1.4E-08 68.9 4.5 35 54-89 3-37 (589)
161 PRK06263 sdhA succinate dehydr 97.0 0.00059 1.3E-08 68.4 4.2 35 53-89 6-40 (543)
162 PRK06069 sdhA succinate dehydr 97.0 0.00059 1.3E-08 68.9 4.2 36 53-89 4-42 (577)
163 PRK07395 L-aspartate oxidase; 97.0 0.00076 1.6E-08 67.9 4.9 38 51-90 6-43 (553)
164 PRK05329 anaerobic glycerol-3- 97.0 0.0007 1.5E-08 66.0 4.4 34 54-88 2-35 (422)
165 PRK12845 3-ketosteroid-delta-1 97.0 0.00083 1.8E-08 67.8 5.1 37 51-89 13-49 (564)
166 PLN02546 glutathione reductase 97.0 0.00066 1.4E-08 68.4 4.3 33 53-86 78-110 (558)
167 COG0579 Predicted dehydrogenas 97.0 0.00072 1.6E-08 65.9 4.4 38 53-90 2-40 (429)
168 COG1231 Monoamine oxidase [Ami 97.0 0.00081 1.8E-08 65.3 4.6 38 52-90 5-42 (450)
169 COG3380 Predicted NAD/FAD-depe 97.0 0.00085 1.8E-08 61.5 4.3 35 55-90 2-36 (331)
170 PLN02172 flavin-containing mon 97.0 0.0011 2.3E-08 65.4 5.1 38 52-90 8-45 (461)
171 PRK05868 hypothetical protein; 96.9 0.00092 2E-08 63.7 4.6 35 55-90 2-36 (372)
172 PRK07843 3-ketosteroid-delta-1 96.9 0.00089 1.9E-08 67.4 4.7 36 53-89 6-41 (557)
173 COG3573 Predicted oxidoreducta 96.9 0.001 2.2E-08 62.7 4.7 39 52-91 3-41 (552)
174 PRK08205 sdhA succinate dehydr 96.9 0.0008 1.7E-08 68.1 4.3 35 53-89 4-38 (583)
175 PRK12839 hypothetical protein; 96.9 0.0011 2.3E-08 67.1 5.0 37 52-89 6-42 (572)
176 COG1249 Lpd Pyruvate/2-oxoglut 96.9 0.00097 2.1E-08 65.6 4.5 36 52-88 2-37 (454)
177 PLN02815 L-aspartate oxidase 96.9 0.001 2.2E-08 67.6 4.8 37 52-90 27-63 (594)
178 TIGR00551 nadB L-aspartate oxi 96.9 0.00096 2.1E-08 66.0 4.4 34 54-89 2-35 (488)
179 PRK12416 protoporphyrinogen ox 96.9 0.00098 2.1E-08 65.0 4.4 35 56-90 3-42 (463)
180 PTZ00153 lipoamide dehydrogena 96.9 0.00095 2.1E-08 68.5 4.4 33 54-87 116-148 (659)
181 PRK09077 L-aspartate oxidase; 96.9 0.00089 1.9E-08 67.0 4.1 37 52-90 6-42 (536)
182 PRK14727 putative mercuric red 96.9 0.0012 2.6E-08 65.1 4.6 36 52-88 14-49 (479)
183 PRK09231 fumarate reductase fl 96.8 0.001 2.2E-08 67.3 4.2 37 53-89 3-40 (582)
184 PRK05335 tRNA (uracil-5-)-meth 96.8 0.0012 2.7E-08 64.3 4.5 35 55-90 3-37 (436)
185 COG2072 TrkA Predicted flavopr 96.8 0.0013 2.9E-08 64.3 4.7 39 51-90 5-44 (443)
186 PLN02568 polyamine oxidase 96.8 0.0014 3.1E-08 65.7 4.9 38 53-90 4-45 (539)
187 TIGR01438 TGR thioredoxin and 96.8 0.0012 2.7E-08 65.3 4.4 32 54-86 2-33 (484)
188 PRK08071 L-aspartate oxidase; 96.8 0.0012 2.6E-08 65.8 4.2 35 54-90 3-37 (510)
189 TIGR02061 aprA adenosine phosp 96.8 0.0013 2.8E-08 67.0 4.5 33 56-89 1-37 (614)
190 TIGR01176 fum_red_Fp fumarate 96.8 0.0012 2.7E-08 66.7 4.0 36 54-89 3-39 (580)
191 PRK13800 putative oxidoreducta 96.8 0.0014 3E-08 69.7 4.5 36 53-89 12-47 (897)
192 TIGR02731 phytoene_desat phyto 96.7 0.0016 3.5E-08 63.3 4.5 34 56-90 1-34 (453)
193 PRK15317 alkyl hydroperoxide r 96.7 0.0017 3.7E-08 64.7 4.6 34 52-86 209-242 (517)
194 PRK06475 salicylate hydroxylas 96.7 0.0018 3.9E-08 62.1 4.5 34 55-89 3-36 (400)
195 TIGR03140 AhpF alkyl hydropero 96.7 0.0016 3.6E-08 64.8 4.3 34 52-86 210-243 (515)
196 PTZ00306 NADH-dependent fumara 96.7 0.0017 3.7E-08 70.8 4.5 37 53-90 408-444 (1167)
197 COG0578 GlpA Glycerol-3-phosph 96.7 0.0019 4.2E-08 64.4 4.5 38 52-90 10-47 (532)
198 PRK06134 putative FAD-binding 96.6 0.0021 4.6E-08 65.0 4.8 37 52-89 10-46 (581)
199 KOG3855|consensus 96.6 0.0025 5.4E-08 61.4 4.9 49 41-89 22-74 (481)
200 PRK12843 putative FAD-binding 96.6 0.0028 6E-08 64.1 5.6 37 52-89 14-50 (578)
201 TIGR03378 glycerol3P_GlpB glyc 96.6 0.0023 5E-08 62.3 4.3 34 55-89 1-34 (419)
202 TIGR01372 soxA sarcosine oxida 96.5 0.0025 5.4E-08 68.4 4.7 37 53-90 162-198 (985)
203 PLN02927 antheraxanthin epoxid 96.5 0.0027 6E-08 65.2 4.6 36 52-88 79-114 (668)
204 TIGR03219 salicylate_mono sali 96.5 0.0029 6.4E-08 60.8 4.6 35 56-90 2-36 (414)
205 PRK12831 putative oxidoreducta 96.5 0.0034 7.3E-08 61.8 5.0 38 51-89 137-174 (464)
206 COG1053 SdhA Succinate dehydro 96.5 0.0027 5.9E-08 64.0 4.3 38 52-90 4-41 (562)
207 PRK06912 acoL dihydrolipoamide 96.5 0.0029 6.4E-08 61.9 4.4 32 56-88 2-33 (458)
208 PF01134 GIDA: Glucose inhibit 96.5 0.0027 5.9E-08 61.2 4.0 28 56-84 1-28 (392)
209 PRK07512 L-aspartate oxidase; 96.5 0.0026 5.7E-08 63.4 3.9 35 52-89 7-41 (513)
210 TIGR03315 Se_ygfK putative sel 96.5 0.0036 7.8E-08 67.0 5.1 36 53-89 536-571 (1012)
211 TIGR00137 gid_trmFO tRNA:m(5)U 96.4 0.0032 7E-08 61.5 4.4 33 56-89 2-34 (433)
212 PLN02612 phytoene desaturase 96.4 0.0046 1E-07 62.4 5.7 38 51-89 90-127 (567)
213 PRK07846 mycothione reductase; 96.4 0.0035 7.5E-08 61.4 4.4 32 54-88 1-32 (451)
214 COG3349 Uncharacterized conser 96.4 0.0032 7E-08 62.0 4.1 34 56-90 2-35 (485)
215 KOG2614|consensus 96.4 0.0039 8.4E-08 60.0 4.5 36 54-90 2-37 (420)
216 KOG2665|consensus 96.4 0.0025 5.4E-08 59.6 3.0 40 51-90 45-85 (453)
217 PRK12810 gltD glutamate syntha 96.4 0.0047 1E-07 60.8 5.0 38 52-90 141-178 (471)
218 KOG2820|consensus 96.3 0.0031 6.8E-08 59.4 3.5 38 52-90 5-42 (399)
219 TIGR00275 flavoprotein, HI0933 96.3 0.0024 5.3E-08 61.5 2.9 32 58-90 1-32 (400)
220 TIGR03452 mycothione_red mycot 96.3 0.0042 9E-08 60.9 4.4 32 54-88 2-33 (452)
221 TIGR00136 gidA glucose-inhibit 96.3 0.0041 8.9E-08 63.1 4.3 34 55-89 1-34 (617)
222 TIGR01316 gltA glutamate synth 96.2 0.0059 1.3E-07 59.8 5.0 37 52-89 131-167 (449)
223 KOG1399|consensus 96.2 0.0042 9.2E-08 61.0 4.0 36 54-90 6-41 (448)
224 PF00070 Pyr_redox: Pyridine n 96.2 0.0083 1.8E-07 44.3 4.7 34 57-91 2-35 (80)
225 COG1232 HemY Protoporphyrinoge 96.2 0.0047 1E-07 60.6 4.2 35 56-90 2-37 (444)
226 PLN02529 lysine-specific histo 96.2 0.0062 1.3E-07 63.3 5.0 38 51-89 157-194 (738)
227 PRK13977 myosin-cross-reactive 96.2 0.0077 1.7E-07 60.7 5.3 39 52-90 20-61 (576)
228 KOG0685|consensus 96.2 0.0057 1.2E-07 59.8 4.3 39 52-90 19-57 (498)
229 PRK12770 putative glutamate sy 96.1 0.0082 1.8E-07 56.6 5.3 40 50-90 14-53 (352)
230 TIGR01811 sdhA_Bsu succinate d 96.1 0.0046 1E-07 62.9 3.8 31 57-88 1-31 (603)
231 TIGR02732 zeta_caro_desat caro 96.1 0.006 1.3E-07 60.2 4.4 34 56-90 1-34 (474)
232 PLN02328 lysine-specific histo 96.1 0.0074 1.6E-07 63.2 5.0 38 52-90 236-273 (808)
233 PF00996 GDI: GDP dissociation 96.1 0.0071 1.5E-07 59.2 4.6 39 52-91 2-40 (438)
234 PF04820 Trp_halogenase: Trypt 96.1 0.0053 1.1E-07 60.4 3.6 34 56-90 1-37 (454)
235 PRK11749 dihydropyrimidine deh 96.1 0.0085 1.8E-07 58.7 5.1 38 52-90 138-175 (457)
236 PRK12779 putative bifunctional 96.0 0.0068 1.5E-07 64.8 4.4 36 53-89 305-340 (944)
237 PLN02852 ferredoxin-NADP+ redu 96.0 0.011 2.5E-07 58.7 5.7 40 51-90 23-63 (491)
238 COG3075 GlpB Anaerobic glycero 95.9 0.0084 1.8E-07 56.5 4.1 35 54-89 2-36 (421)
239 PRK12769 putative oxidoreducta 95.9 0.0082 1.8E-07 61.6 4.5 36 53-89 326-361 (654)
240 PRK12775 putative trifunctiona 95.9 0.0084 1.8E-07 64.5 4.7 37 53-90 429-465 (1006)
241 PRK12778 putative bifunctional 95.8 0.01 2.2E-07 61.8 4.8 36 52-88 429-464 (752)
242 PRK08255 salicylyl-CoA 5-hydro 95.8 0.0089 1.9E-07 62.5 4.2 34 56-89 2-36 (765)
243 PRK07845 flavoprotein disulfid 95.8 0.011 2.3E-07 58.2 4.5 32 56-88 3-34 (466)
244 KOG2960|consensus 95.7 0.0031 6.6E-08 56.1 0.3 38 52-89 74-112 (328)
245 PRK09853 putative selenate red 95.7 0.011 2.4E-07 63.3 4.5 37 52-89 537-573 (1019)
246 KOG2853|consensus 95.6 0.013 2.8E-07 55.5 4.1 44 47-90 79-125 (509)
247 PLN02487 zeta-carotene desatur 95.6 0.015 3.2E-07 58.9 4.6 37 53-90 74-110 (569)
248 PRK12814 putative NADPH-depend 95.5 0.019 4E-07 59.0 5.2 37 52-89 191-227 (652)
249 PLN03000 amine oxidase 95.4 0.02 4.4E-07 60.3 4.9 37 53-90 183-219 (881)
250 KOG4716|consensus 95.3 0.016 3.4E-07 54.9 3.5 36 52-88 17-52 (503)
251 PF00743 FMO-like: Flavin-bind 95.3 0.019 4.2E-07 57.6 4.4 34 56-90 3-36 (531)
252 PTZ00188 adrenodoxin reductase 95.3 0.026 5.6E-07 56.1 5.1 38 53-90 38-75 (506)
253 PRK06567 putative bifunctional 95.3 0.022 4.8E-07 60.7 4.9 35 52-87 381-415 (1028)
254 TIGR02485 CobZ_N-term precorri 95.2 0.013 2.9E-07 56.8 2.9 30 59-89 1-30 (432)
255 TIGR01317 GOGAT_sm_gam glutama 95.2 0.027 5.9E-07 55.8 4.9 36 53-89 142-177 (485)
256 TIGR01318 gltD_gamma_fam gluta 95.2 0.026 5.6E-07 55.6 4.7 36 53-89 140-175 (467)
257 PF06039 Mqo: Malate:quinone o 95.1 0.027 5.8E-07 55.3 4.4 38 53-90 2-40 (488)
258 COG0029 NadB Aspartate oxidase 95.1 0.021 4.6E-07 56.3 3.7 33 56-90 9-41 (518)
259 PRK12809 putative oxidoreducta 95.0 0.027 5.8E-07 57.7 4.3 36 53-89 309-344 (639)
260 PLN02976 amine oxidase 94.9 0.032 7E-07 61.6 4.7 36 53-89 692-727 (1713)
261 COG0445 GidA Flavin-dependent 94.9 0.026 5.7E-07 56.3 3.8 37 53-90 3-39 (621)
262 COG1148 HdrA Heterodisulfide r 94.8 0.035 7.5E-07 54.8 4.3 36 54-90 124-159 (622)
263 PRK09897 hypothetical protein; 94.8 0.035 7.5E-07 55.8 4.5 35 55-89 2-37 (534)
264 KOG0042|consensus 94.7 0.014 3E-07 58.1 1.5 38 52-90 65-102 (680)
265 COG2907 Predicted NAD/FAD-bind 94.6 0.028 6E-07 53.4 3.2 36 53-90 7-42 (447)
266 KOG0405|consensus 94.6 0.033 7.1E-07 53.0 3.6 36 52-88 18-53 (478)
267 PRK09564 coenzyme A disulfide 94.5 0.041 8.8E-07 53.3 4.2 35 56-90 2-37 (444)
268 PRK13984 putative oxidoreducta 94.5 0.055 1.2E-06 54.9 5.2 38 52-90 281-318 (604)
269 PRK09754 phenylpropionate diox 94.4 0.053 1.1E-06 52.0 4.6 36 55-90 4-40 (396)
270 PRK13512 coenzyme A disulfide 94.3 0.049 1.1E-06 53.0 4.3 35 56-90 3-38 (438)
271 KOG1335|consensus 94.3 0.047 1E-06 52.5 3.9 35 53-88 38-72 (506)
272 PRK12771 putative glutamate sy 94.2 0.069 1.5E-06 53.8 5.1 36 52-88 135-170 (564)
273 KOG1276|consensus 94.1 0.062 1.3E-06 52.2 4.4 38 53-90 10-48 (491)
274 PF13434 K_oxygenase: L-lysine 94.1 0.035 7.6E-07 52.6 2.8 37 54-90 2-38 (341)
275 PTZ00318 NADH dehydrogenase-li 94.1 0.067 1.4E-06 51.9 4.6 38 52-90 8-45 (424)
276 PF13454 NAD_binding_9: FAD-NA 93.9 0.064 1.4E-06 44.8 3.6 31 58-88 1-35 (156)
277 TIGR03169 Nterm_to_SelD pyridi 93.6 0.094 2E-06 49.4 4.7 35 56-90 1-37 (364)
278 KOG1800|consensus 93.6 0.089 1.9E-06 50.5 4.4 37 54-90 20-57 (468)
279 PRK04965 NADH:flavorubredoxin 93.2 0.11 2.4E-06 49.4 4.5 35 55-89 3-38 (377)
280 KOG4254|consensus 93.1 0.077 1.7E-06 52.0 3.2 38 52-90 12-49 (561)
281 KOG3851|consensus 93.1 0.086 1.9E-06 49.7 3.3 39 52-90 37-76 (446)
282 COG0493 GltD NADPH-dependent g 92.9 0.1 2.2E-06 51.5 3.7 37 53-90 122-158 (457)
283 KOG4405|consensus 92.7 0.12 2.6E-06 50.1 3.7 39 51-90 5-43 (547)
284 COG2509 Uncharacterized FAD-de 92.5 0.13 2.7E-06 50.5 3.7 41 51-91 15-59 (486)
285 KOG2311|consensus 92.2 0.13 2.9E-06 50.8 3.5 35 52-87 26-60 (679)
286 COG1206 Gid NAD(FAD)-utilizing 91.9 0.14 3E-06 48.5 3.1 34 56-90 5-38 (439)
287 COG0569 TrkA K+ transport syst 91.4 0.24 5.3E-06 44.1 4.0 34 56-90 2-35 (225)
288 PF02558 ApbA: Ketopantoate re 91.2 0.28 6E-06 40.1 4.0 31 57-88 1-31 (151)
289 COG0446 HcaD Uncharacterized N 90.7 0.31 6.7E-06 45.7 4.3 37 54-91 136-172 (415)
290 KOG2755|consensus 90.4 0.2 4.4E-06 46.0 2.6 35 56-90 1-36 (334)
291 COG4529 Uncharacterized protei 90.3 0.36 7.9E-06 47.6 4.4 37 54-90 1-39 (474)
292 COG5044 MRS6 RAB proteins gera 89.9 0.42 9.1E-06 45.8 4.3 37 53-90 5-41 (434)
293 KOG2844|consensus 89.6 0.37 8.1E-06 49.4 4.0 35 51-86 36-71 (856)
294 COG3634 AhpF Alkyl hydroperoxi 89.6 0.21 4.5E-06 47.7 2.1 34 52-86 209-243 (520)
295 PRK09754 phenylpropionate diox 89.5 0.47 1E-05 45.4 4.4 34 56-90 146-179 (396)
296 KOG2404|consensus 89.4 0.37 8.1E-06 45.6 3.5 34 56-90 11-44 (477)
297 PRK04965 NADH:flavorubredoxin 89.1 0.53 1.1E-05 44.7 4.5 34 56-90 143-176 (377)
298 KOG1439|consensus 88.9 0.25 5.4E-06 47.7 2.1 38 52-90 2-39 (440)
299 COG1252 Ndh NADH dehydrogenase 88.9 0.27 5.8E-06 47.8 2.3 38 53-90 154-203 (405)
300 PRK05976 dihydrolipoamide dehy 88.3 0.59 1.3E-05 45.9 4.4 34 56-90 182-215 (472)
301 PRK07251 pyridine nucleotide-d 88.2 0.63 1.4E-05 45.1 4.4 34 56-90 159-192 (438)
302 PF01210 NAD_Gly3P_dh_N: NAD-d 88.1 0.66 1.4E-05 38.7 3.9 31 57-88 2-32 (157)
303 COG1252 Ndh NADH dehydrogenase 87.5 0.77 1.7E-05 44.6 4.5 36 55-90 4-40 (405)
304 PRK06912 acoL dihydrolipoamide 87.0 0.83 1.8E-05 44.7 4.5 34 56-90 172-205 (458)
305 TIGR01350 lipoamide_DH dihydro 87.0 0.8 1.7E-05 44.6 4.3 35 55-90 171-205 (461)
306 PRK10669 putative cation:proto 86.8 4 8.8E-05 41.1 9.4 35 54-89 417-451 (558)
307 PRK06467 dihydrolipoamide dehy 86.7 0.84 1.8E-05 44.9 4.4 34 56-90 176-209 (471)
308 TIGR02374 nitri_red_nirB nitri 86.7 0.75 1.6E-05 48.4 4.2 34 57-90 1-36 (785)
309 PRK14989 nitrite reductase sub 86.5 0.85 1.9E-05 48.5 4.5 35 56-90 5-42 (847)
310 PF02737 3HCDH_N: 3-hydroxyacy 86.4 0.99 2.1E-05 38.7 4.2 32 57-89 2-33 (180)
311 PF02254 TrkA_N: TrkA-N domain 86.4 1.1 2.4E-05 34.7 4.2 32 57-89 1-32 (116)
312 PRK07846 mycothione reductase; 86.4 0.92 2E-05 44.4 4.4 35 55-90 167-201 (451)
313 TIGR01421 gluta_reduc_1 glutat 86.0 0.97 2.1E-05 44.2 4.4 33 56-89 168-200 (450)
314 TIGR02053 MerA mercuric reduct 85.9 0.98 2.1E-05 44.1 4.4 34 56-90 168-201 (463)
315 TIGR03385 CoA_CoA_reduc CoA-di 85.9 1 2.2E-05 43.4 4.4 34 56-90 139-172 (427)
316 PRK05708 2-dehydropantoate 2-r 85.8 1 2.2E-05 41.9 4.2 33 55-88 3-35 (305)
317 PF13738 Pyr_redox_3: Pyridine 85.6 1.2 2.6E-05 37.8 4.3 35 53-88 166-200 (203)
318 PRK06115 dihydrolipoamide dehy 85.4 1.1 2.4E-05 44.0 4.5 34 56-90 176-209 (466)
319 PRK13512 coenzyme A disulfide 85.4 1.1 2.3E-05 43.7 4.3 33 56-89 150-182 (438)
320 KOG0399|consensus 85.3 0.99 2.1E-05 49.1 4.2 37 53-90 1784-1820(2142)
321 PRK06416 dihydrolipoamide dehy 85.2 1.1 2.5E-05 43.6 4.5 34 56-90 174-207 (462)
322 PRK06370 mercuric reductase; V 85.1 1.1 2.5E-05 43.7 4.4 34 56-90 173-206 (463)
323 PRK05249 soluble pyridine nucl 85.0 1.2 2.5E-05 43.5 4.4 34 56-90 177-210 (461)
324 PRK07818 dihydrolipoamide dehy 85.0 1.2 2.5E-05 43.7 4.4 34 56-90 174-207 (466)
325 PRK06249 2-dehydropantoate 2-r 84.8 1.3 2.7E-05 41.2 4.4 33 55-88 6-38 (313)
326 KOG2495|consensus 84.0 0.51 1.1E-05 46.1 1.3 38 53-90 217-267 (491)
327 PRK06292 dihydrolipoamide dehy 83.8 1.4 3.1E-05 42.9 4.4 34 56-90 171-204 (460)
328 PRK06522 2-dehydropantoate 2-r 83.3 1.5 3.3E-05 39.9 4.2 30 57-87 3-32 (304)
329 PRK12921 2-dehydropantoate 2-r 83.1 1.5 3.3E-05 40.1 4.1 29 57-86 3-31 (305)
330 TIGR03452 mycothione_red mycot 83.1 1.6 3.4E-05 42.8 4.4 33 56-89 171-203 (452)
331 TIGR01424 gluta_reduc_2 glutat 82.6 1.7 3.7E-05 42.3 4.4 34 56-90 168-201 (446)
332 KOG0404|consensus 82.5 1.3 2.9E-05 40.0 3.2 33 55-88 9-41 (322)
333 TIGR01292 TRX_reduct thioredox 82.4 1.7 3.8E-05 38.9 4.1 35 55-90 142-176 (300)
334 PRK09564 coenzyme A disulfide 82.3 1.7 3.7E-05 42.0 4.3 34 55-89 150-183 (444)
335 TIGR03140 AhpF alkyl hydropero 82.2 1.7 3.6E-05 43.4 4.3 34 56-90 354-387 (515)
336 PRK06129 3-hydroxyacyl-CoA deh 82.1 1.7 3.7E-05 40.3 4.0 32 56-88 4-35 (308)
337 PTZ00318 NADH dehydrogenase-li 82.1 1.6 3.4E-05 42.3 4.0 35 56-90 175-222 (424)
338 COG1249 Lpd Pyruvate/2-oxoglut 81.9 2.2 4.7E-05 42.2 4.8 34 56-90 175-208 (454)
339 PRK07845 flavoprotein disulfid 81.9 1.9 4.2E-05 42.3 4.5 34 56-90 179-212 (466)
340 PRK06327 dihydrolipoamide dehy 81.6 1.9 4.2E-05 42.4 4.4 34 56-90 185-218 (475)
341 PRK06719 precorrin-2 dehydroge 81.5 2.3 4.9E-05 35.8 4.2 31 54-85 13-43 (157)
342 TIGR03143 AhpF_homolog putativ 81.5 1.9 4E-05 43.5 4.3 33 56-89 145-177 (555)
343 PRK06116 glutathione reductase 81.4 2 4.3E-05 41.8 4.4 34 56-90 169-202 (450)
344 COG3486 IucD Lysine/ornithine 81.1 2.1 4.6E-05 41.6 4.3 39 52-90 3-41 (436)
345 PF01593 Amino_oxidase: Flavin 81.1 1.6 3.4E-05 40.5 3.4 26 64-90 1-26 (450)
346 PRK01438 murD UDP-N-acetylmura 81.0 2.1 4.6E-05 42.0 4.5 33 55-88 17-49 (480)
347 PRK15317 alkyl hydroperoxide r 80.9 2 4.4E-05 42.8 4.3 34 56-90 353-386 (517)
348 PF06100 Strep_67kDa_ant: Stre 80.7 1.9 4.1E-05 42.9 3.9 34 56-89 4-40 (500)
349 PRK10262 thioredoxin reductase 80.6 2.2 4.7E-05 39.4 4.2 33 56-89 148-180 (321)
350 PLN02507 glutathione reductase 80.6 2.1 4.6E-05 42.6 4.3 33 56-89 205-237 (499)
351 PRK08293 3-hydroxybutyryl-CoA 80.5 2.3 4.9E-05 39.0 4.2 32 56-88 5-36 (287)
352 PF13241 NAD_binding_7: Putati 80.3 1.9 4.2E-05 33.3 3.2 34 53-87 6-39 (103)
353 TIGR02374 nitri_red_nirB nitri 80.2 2.2 4.7E-05 45.0 4.4 34 56-90 142-175 (785)
354 PTZ00153 lipoamide dehydrogena 80.0 2.3 5E-05 44.0 4.5 34 56-90 314-347 (659)
355 PRK08010 pyridine nucleotide-d 80.0 2.4 5.3E-05 41.1 4.5 34 56-90 160-193 (441)
356 PRK06718 precorrin-2 dehydroge 79.7 2.7 5.8E-05 36.8 4.2 32 54-86 10-41 (202)
357 PRK13748 putative mercuric red 79.6 2.4 5.2E-05 42.5 4.4 32 56-88 272-303 (561)
358 PLN02546 glutathione reductase 79.6 2.4 5.1E-05 43.0 4.3 33 56-89 254-286 (558)
359 PF03721 UDPG_MGDP_dh_N: UDP-g 79.6 2.2 4.9E-05 36.8 3.6 32 57-89 3-34 (185)
360 PRK09260 3-hydroxybutyryl-CoA 79.5 2.4 5.3E-05 38.8 4.1 31 57-88 4-34 (288)
361 PRK14694 putative mercuric red 79.4 2.5 5.5E-05 41.4 4.4 32 56-88 180-211 (468)
362 PRK02705 murD UDP-N-acetylmura 79.4 2.5 5.4E-05 41.2 4.4 32 57-89 3-34 (459)
363 PRK14727 putative mercuric red 77.9 2.9 6.2E-05 41.2 4.3 31 56-87 190-220 (479)
364 PRK03562 glutathione-regulated 77.9 12 0.00026 38.4 8.9 36 54-90 400-435 (621)
365 PRK14620 NAD(P)H-dependent gly 77.9 3 6.4E-05 38.8 4.2 31 57-88 3-33 (326)
366 PTZ00058 glutathione reductase 77.7 2.7 5.9E-05 42.6 4.2 33 56-89 239-271 (561)
367 PRK12770 putative glutamate sy 77.6 3 6.4E-05 39.2 4.1 32 56-88 174-206 (352)
368 PRK07066 3-hydroxybutyryl-CoA 77.4 3.2 6.9E-05 39.1 4.2 32 56-88 9-40 (321)
369 PRK14989 nitrite reductase sub 76.7 3.1 6.8E-05 44.3 4.4 33 56-89 147-179 (847)
370 COG1748 LYS9 Saccharopine dehy 76.6 3.4 7.4E-05 40.0 4.3 33 56-88 3-35 (389)
371 PRK08229 2-dehydropantoate 2-r 76.6 3.3 7.1E-05 38.6 4.1 32 56-88 4-35 (341)
372 PRK07819 3-hydroxybutyryl-CoA 76.5 3.4 7.5E-05 38.0 4.2 34 56-90 7-40 (286)
373 PRK07530 3-hydroxybutyryl-CoA 76.4 3.5 7.6E-05 37.7 4.2 32 56-88 6-37 (292)
374 PRK04148 hypothetical protein; 76.3 2.4 5.3E-05 34.9 2.8 33 55-89 18-50 (134)
375 PRK06035 3-hydroxyacyl-CoA deh 76.1 3.6 7.9E-05 37.7 4.2 32 56-88 5-36 (291)
376 TIGR01423 trypano_reduc trypan 75.8 3.6 7.8E-05 40.9 4.3 35 56-90 189-225 (486)
377 KOG3923|consensus 75.7 4 8.7E-05 38.3 4.3 38 54-91 3-46 (342)
378 TIGR01316 gltA glutamate synth 75.5 3.6 7.9E-05 40.2 4.3 33 56-89 274-306 (449)
379 PRK14106 murD UDP-N-acetylmura 75.3 3.7 8.1E-05 39.8 4.2 33 55-88 6-38 (450)
380 PRK12475 thiamine/molybdopteri 75.0 4 8.6E-05 38.7 4.2 36 53-89 23-59 (338)
381 PRK14618 NAD(P)H-dependent gly 74.9 4 8.7E-05 38.0 4.2 32 56-88 6-37 (328)
382 TIGR01470 cysG_Nterm siroheme 74.5 4.6 9.9E-05 35.4 4.2 32 55-87 10-41 (205)
383 PRK06130 3-hydroxybutyryl-CoA 74.4 4.3 9.2E-05 37.5 4.2 32 56-88 6-37 (311)
384 PTZ00052 thioredoxin reductase 74.1 3.9 8.4E-05 40.7 4.1 31 56-87 184-214 (499)
385 TIGR01438 TGR thioredoxin and 73.8 3.9 8.5E-05 40.5 4.1 31 56-87 182-212 (484)
386 PRK05808 3-hydroxybutyryl-CoA 73.5 4.4 9.6E-05 36.9 4.1 32 56-88 5-36 (282)
387 PRK03659 glutathione-regulated 73.4 17 0.00036 37.2 8.6 36 54-90 400-435 (601)
388 PRK00094 gpsA NAD(P)H-dependen 73.3 4.8 0.0001 37.0 4.3 32 56-88 3-34 (325)
389 PRK10537 voltage-gated potassi 73.2 19 0.00041 34.9 8.5 32 54-86 240-271 (393)
390 cd01075 NAD_bind_Leu_Phe_Val_D 73.0 5.4 0.00012 34.8 4.3 33 55-88 29-61 (200)
391 TIGR02354 thiF_fam2 thiamine b 72.9 5.3 0.00011 34.9 4.2 35 53-88 20-55 (200)
392 COG1893 ApbA Ketopantoate redu 72.8 4.7 0.0001 37.6 4.1 32 57-89 3-34 (307)
393 COG2072 TrkA Predicted flavopr 72.6 5.1 0.00011 39.3 4.4 44 46-90 167-210 (443)
394 PLN02545 3-hydroxybutyryl-CoA 72.3 5.2 0.00011 36.7 4.3 32 56-88 6-37 (295)
395 PRK07688 thiamine/molybdopteri 71.8 5.4 0.00012 37.8 4.3 36 52-88 22-58 (339)
396 COG3634 AhpF Alkyl hydroperoxi 71.4 4 8.7E-05 39.2 3.2 39 51-90 351-389 (520)
397 PF00899 ThiF: ThiF family; I 71.2 5.4 0.00012 32.1 3.6 35 55-90 3-38 (135)
398 cd01483 E1_enzyme_family Super 71.0 7 0.00015 31.6 4.3 33 57-90 2-35 (143)
399 PRK12831 putative oxidoreducta 70.1 5.7 0.00012 39.1 4.2 33 56-89 283-315 (464)
400 PRK09496 trkA potassium transp 70.1 5.7 0.00012 38.4 4.2 32 56-88 2-33 (453)
401 PLN02172 flavin-containing mon 68.4 5.2 0.00011 39.5 3.5 34 55-89 205-238 (461)
402 PRK11749 dihydropyrimidine deh 67.2 7.7 0.00017 37.9 4.4 33 55-88 274-307 (457)
403 TIGR03026 NDP-sugDHase nucleot 67.2 6.7 0.00015 37.9 4.0 33 56-89 2-34 (411)
404 PRK14619 NAD(P)H-dependent gly 66.9 7.5 0.00016 36.0 4.1 32 56-88 6-37 (308)
405 KOG2852|consensus 66.8 2.6 5.5E-05 39.5 0.9 36 53-88 9-49 (380)
406 TIGR00518 alaDH alanine dehydr 66.6 7.7 0.00017 37.2 4.2 34 54-88 167-200 (370)
407 PF01118 Semialdhyde_dh: Semia 66.5 8.6 0.00019 30.4 3.8 33 57-89 2-35 (121)
408 PF01488 Shikimate_DH: Shikima 66.5 10 0.00023 30.6 4.4 34 53-87 11-45 (135)
409 PRK09496 trkA potassium transp 66.4 7.8 0.00017 37.5 4.3 35 54-89 231-265 (453)
410 TIGR01763 MalateDH_bact malate 66.1 8.3 0.00018 35.9 4.2 30 56-86 3-33 (305)
411 PRK07417 arogenate dehydrogena 65.7 7.6 0.00016 35.4 3.8 31 57-88 3-33 (279)
412 cd05191 NAD_bind_amino_acid_DH 65.7 12 0.00027 27.6 4.4 33 54-86 23-55 (86)
413 TIGR01915 npdG NADPH-dependent 65.6 9.2 0.0002 33.5 4.2 31 57-88 3-34 (219)
414 PRK02472 murD UDP-N-acetylmura 64.1 9.3 0.0002 37.0 4.3 32 56-88 7-38 (447)
415 PRK11064 wecC UDP-N-acetyl-D-m 64.0 8.6 0.00019 37.4 4.0 33 56-89 5-37 (415)
416 PRK07531 bifunctional 3-hydrox 63.6 9.1 0.0002 38.1 4.2 32 56-88 6-37 (495)
417 cd01487 E1_ThiF_like E1_ThiF_l 63.4 12 0.00026 31.8 4.4 31 57-88 2-33 (174)
418 TIGR02279 PaaC-3OHAcCoADH 3-hy 63.1 9.5 0.0002 38.2 4.2 32 56-88 7-38 (503)
419 PRK15116 sulfur acceptor prote 62.7 11 0.00024 34.6 4.3 38 52-90 28-66 (268)
420 cd05292 LDH_2 A subgroup of L- 62.3 11 0.00023 35.1 4.2 33 56-89 2-36 (308)
421 PF03435 Saccharop_dh: Sacchar 62.3 9.2 0.0002 36.4 3.8 33 57-89 1-34 (386)
422 cd00401 AdoHcyase S-adenosyl-L 62.0 11 0.00023 36.9 4.3 35 54-89 202-236 (413)
423 TIGR02356 adenyl_thiF thiazole 61.7 13 0.00028 32.3 4.4 37 52-89 19-56 (202)
424 PF03807 F420_oxidored: NADP o 61.2 14 0.0003 27.4 4.0 32 57-89 2-37 (96)
425 PRK11730 fadB multifunctional 61.1 9.9 0.00022 39.7 4.1 33 56-89 315-347 (715)
426 cd00757 ThiF_MoeB_HesA_family 61.0 13 0.00028 32.9 4.3 37 53-89 20-56 (228)
427 cd01339 LDH-like_MDH L-lactate 61.0 10 0.00022 35.0 3.7 32 57-89 1-33 (300)
428 PRK06223 malate dehydrogenase; 60.6 12 0.00027 34.4 4.3 31 56-87 4-35 (307)
429 cd05311 NAD_bind_2_malic_enz N 60.4 11 0.00025 33.4 3.9 33 55-88 26-61 (226)
430 PRK12778 putative bifunctional 60.1 11 0.00023 39.5 4.2 33 56-89 572-605 (752)
431 cd05291 HicDH_like L-2-hydroxy 60.1 13 0.00027 34.5 4.2 32 57-89 3-36 (306)
432 PF03446 NAD_binding_2: NAD bi 59.7 14 0.0003 30.8 4.1 32 56-88 3-34 (163)
433 PF01262 AlaDh_PNT_C: Alanine 59.6 14 0.0003 31.0 4.1 34 54-88 20-53 (168)
434 TIGR02437 FadB fatty oxidation 59.6 11 0.00024 39.4 4.1 34 55-89 314-347 (714)
435 PTZ00082 L-lactate dehydrogena 59.5 13 0.00028 34.9 4.2 34 55-89 7-41 (321)
436 PRK05690 molybdopterin biosynt 59.4 14 0.00031 33.2 4.4 38 52-90 30-68 (245)
437 PRK08268 3-hydroxy-acyl-CoA de 59.3 12 0.00026 37.4 4.2 32 57-89 10-41 (507)
438 PF13460 NAD_binding_10: NADH( 59.0 15 0.00033 30.4 4.2 32 57-89 1-33 (183)
439 TIGR03736 PRTRC_ThiF PRTRC sys 58.8 14 0.00031 33.5 4.2 39 52-90 9-57 (244)
440 TIGR02853 spore_dpaA dipicolin 58.8 13 0.00028 34.3 4.1 33 55-88 152-184 (287)
441 COG0446 HcaD Uncharacterized N 58.6 13 0.00029 34.6 4.2 34 57-90 1-35 (415)
442 cd01080 NAD_bind_m-THF_DH_Cycl 58.3 17 0.00036 30.9 4.4 35 52-87 42-77 (168)
443 PLN02353 probable UDP-glucose 57.9 13 0.00029 36.9 4.2 34 56-89 3-37 (473)
444 PRK08328 hypothetical protein; 57.8 16 0.00034 32.6 4.3 36 53-88 26-61 (231)
445 COG1004 Ugd Predicted UDP-gluc 57.5 13 0.00028 36.2 3.9 33 56-89 2-34 (414)
446 PRK08644 thiamine biosynthesis 57.1 16 0.00036 32.1 4.3 35 53-88 27-62 (212)
447 cd01490 Ube1_repeat2 Ubiquitin 56.9 14 0.0003 36.4 4.1 33 57-90 2-40 (435)
448 TIGR01317 GOGAT_sm_gam glutama 56.9 15 0.00033 36.4 4.4 34 56-89 285-318 (485)
449 TIGR01505 tartro_sem_red 2-hyd 56.5 14 0.00029 33.8 3.8 31 57-88 2-32 (291)
450 TIGR02355 moeB molybdopterin s 56.5 18 0.0004 32.4 4.5 39 52-90 22-60 (240)
451 PRK05562 precorrin-2 dehydroge 56.4 17 0.00037 32.5 4.2 31 54-85 25-55 (223)
452 PRK08017 oxidoreductase; Provi 56.1 17 0.00037 31.7 4.2 31 57-88 5-36 (256)
453 TIGR01381 E1_like_apg7 E1-like 56.0 15 0.00033 37.9 4.3 38 53-90 337-374 (664)
454 cd01484 E1-2_like Ubiquitin ac 55.8 17 0.00037 32.6 4.2 33 57-89 2-34 (234)
455 PRK12549 shikimate 5-dehydroge 55.7 17 0.00038 33.4 4.4 32 55-87 128-160 (284)
456 PRK12814 putative NADPH-depend 55.5 16 0.00034 37.7 4.4 35 55-89 324-358 (652)
457 cd01486 Apg7 Apg7 is an E1-lik 55.4 18 0.00039 34.0 4.3 34 57-90 2-35 (307)
458 TIGR02441 fa_ox_alpha_mit fatt 55.2 14 0.00031 38.7 4.1 33 56-89 337-369 (737)
459 TIGR00936 ahcY adenosylhomocys 54.8 18 0.00038 35.4 4.4 35 54-89 195-229 (406)
460 TIGR03376 glycerol3P_DH glycer 54.2 16 0.00035 34.7 4.0 30 56-86 1-38 (342)
461 PRK00066 ldh L-lactate dehydro 53.7 18 0.0004 33.8 4.2 33 55-88 7-41 (315)
462 PRK07502 cyclohexadienyl dehyd 53.3 17 0.00037 33.5 3.9 32 56-88 8-41 (307)
463 PRK11154 fadJ multifunctional 53.2 16 0.00034 38.2 4.0 34 56-89 311-344 (708)
464 PRK09853 putative selenate red 53.2 18 0.00038 39.5 4.4 34 56-89 670-704 (1019)
465 PRK07326 short chain dehydroge 53.1 20 0.00043 30.9 4.1 32 56-88 8-40 (237)
466 TIGR02440 FadJ fatty oxidation 53.0 16 0.00034 38.2 3.9 34 56-89 306-339 (699)
467 cd01492 Aos1_SUMO Ubiquitin ac 53.0 21 0.00046 30.9 4.3 36 53-89 20-56 (197)
468 KOG1336|consensus 52.7 17 0.00038 36.0 3.9 36 54-90 213-248 (478)
469 cd01065 NAD_bind_Shikimate_DH 52.6 24 0.00052 28.5 4.3 34 55-88 20-53 (155)
470 PF00056 Ldh_1_N: lactate/mala 52.4 24 0.00052 28.9 4.3 34 56-89 2-37 (141)
471 COG0451 WcaG Nucleoside-diphos 52.1 22 0.00048 31.8 4.4 33 57-90 3-36 (314)
472 COG2085 Predicted dinucleotide 52.1 19 0.00041 32.0 3.7 31 57-88 4-34 (211)
473 PRK12439 NAD(P)H-dependent gly 51.9 18 0.0004 34.0 4.0 29 55-85 8-36 (341)
474 TIGR00507 aroE shikimate 5-deh 51.7 21 0.00045 32.4 4.2 32 55-87 118-149 (270)
475 PF00743 FMO-like: Flavin-bind 51.7 18 0.0004 36.4 4.1 36 52-88 181-216 (531)
476 cd01485 E1-1_like Ubiquitin ac 51.5 23 0.0005 30.7 4.2 36 53-89 18-54 (198)
477 COG0287 TyrA Prephenate dehydr 51.5 22 0.00047 32.8 4.3 35 55-90 4-38 (279)
478 TIGR03309 matur_yqeB selenium- 51.4 17 0.00037 33.2 3.5 32 57-89 1-32 (256)
479 PRK00536 speE spermidine synth 51.3 18 0.00038 33.2 3.6 33 54-89 73-105 (262)
480 cd01078 NAD_bind_H4MPT_DH NADP 51.1 24 0.00052 30.0 4.3 32 55-87 29-61 (194)
481 PRK05476 S-adenosyl-L-homocyst 50.8 22 0.00048 34.9 4.4 34 55-89 213-246 (425)
482 cd05213 NAD_bind_Glutamyl_tRNA 50.6 21 0.00045 33.2 4.1 36 53-88 177-212 (311)
483 PRK11559 garR tartronate semia 50.6 21 0.00046 32.5 4.1 32 56-88 4-35 (296)
484 cd01488 Uba3_RUB Ubiquitin act 50.3 23 0.00051 32.9 4.3 34 57-90 2-35 (291)
485 PF13434 K_oxygenase: L-lysine 50.2 18 0.00039 34.2 3.6 41 51-91 187-228 (341)
486 PRK15461 NADH-dependent gamma- 50.1 21 0.00046 32.8 4.0 32 56-88 3-34 (296)
487 PRK08306 dipicolinate synthase 50.0 23 0.0005 32.8 4.2 34 54-88 152-185 (296)
488 PRK11199 tyrA bifunctional cho 50.0 20 0.00043 34.4 3.9 33 55-88 99-132 (374)
489 PRK12810 gltD glutamate syntha 49.6 22 0.00048 34.9 4.3 33 56-88 283-315 (471)
490 PRK12548 shikimate 5-dehydroge 49.6 23 0.00049 32.6 4.1 31 56-87 128-159 (289)
491 COG1250 FadB 3-hydroxyacyl-CoA 49.5 20 0.00043 33.7 3.7 32 56-88 5-36 (307)
492 PRK01710 murD UDP-N-acetylmura 49.3 23 0.0005 34.7 4.3 32 56-88 16-47 (458)
493 PRK09982 universal stress prot 49.3 27 0.00058 28.1 4.1 33 52-84 101-137 (142)
494 cd01489 Uba2_SUMO Ubiquitin ac 49.0 23 0.00049 33.3 4.0 34 57-90 2-35 (312)
495 COG1648 CysG Siroheme synthase 48.8 26 0.00057 30.9 4.2 31 54-85 12-42 (210)
496 PRK08762 molybdopterin biosynt 48.6 25 0.00055 33.6 4.4 35 53-88 134-169 (376)
497 PRK12779 putative bifunctional 48.6 22 0.00048 38.5 4.3 33 55-88 448-480 (944)
498 PRK05600 thiamine biosynthesis 48.0 25 0.00054 33.8 4.2 38 52-89 39-76 (370)
499 PRK04308 murD UDP-N-acetylmura 47.6 27 0.00058 33.9 4.5 33 56-89 7-39 (445)
500 PLN02494 adenosylhomocysteinas 47.2 27 0.0006 34.8 4.4 35 54-89 254-288 (477)
No 1
>KOG1238|consensus
Probab=100.00 E-value=1.5e-47 Score=375.89 Aligned_cols=207 Identities=46% Similarity=0.805 Sum_probs=193.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccccccccccccccCCcccccccccCCCCCccccCCCCCC
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQ 130 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~ 130 (284)
...+|||||||+|.|||++|+||+|++.++|||||||++++...++|.+...++.+.+||.|.++|++ .+|+++.++.
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~--~ac~~m~~~~ 131 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQ--HACLAMSEDR 131 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccCh--hhhhhhcCCc
Confidence 56789999999999999999999999999999999999998888899777778889999999999999 9999999999
Q ss_pred cccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCC-CCCCCCCcccCceeecCCcch
Q psy4112 131 CPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEF-LDADIHSREGPLKVTNIPYQN 209 (284)
Q Consensus 131 ~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~-~~~~~hG~~Gpl~v~~~~~~~ 209 (284)
|.|+|||+|||||+||+|+|.|+++.|||+|++.|++||+|++++|||+|+|....+. ...++|+..||+.++...+
T Consensus 132 c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~-- 209 (623)
T KOG1238|consen 132 CYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVY-- 209 (623)
T ss_pred eecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccc--
Confidence 9999999999999999999999999999999999999999999999999999986654 3446999999999998777
Q ss_pred hhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCccCCCCCCCCCcccccccccccCCcccchhhhccCC
Q psy4112 210 LLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS 284 (284)
Q Consensus 210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~~ 284 (284)
.+++...|.++..++|....|+||..+ .|+...+.++++|.|+|++++||++
T Consensus 210 ---------------------~~~~~~~~~~ag~e~G~~~~D~nG~~~--tg~~~l~~t~~~g~R~s~~~a~l~~ 261 (623)
T KOG1238|consen 210 ---------------------PNNLFTAFHRAGTEIGGSIFDRNGERH--TGASLLQYTIRNGIRVSLAKAYLKP 261 (623)
T ss_pred ---------------------cCchhhHhHHhHHhcCCCccCCCCccc--cchhhhhccccCCEEEEehhhhhhh
Confidence 678999999999999988889999999 9999999999999999999999974
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.9e-37 Score=308.86 Aligned_cols=200 Identities=43% Similarity=0.774 Sum_probs=168.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc---cccccccccccc-ccCCcccccccccCCCCCccccCCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHF-NSLTHFNWGYKLEKNEEHPQCLGMY 127 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~ 127 (284)
..+|||||||+|++|+++|.||+|+++++|||||+|+.. ....+.|..... .....++|.|.+.||+ ...
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~------~~~ 76 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP------HMN 76 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC------CCC
Confidence 456999999999999999999999779999999999754 233445543322 2235679999999987 566
Q ss_pred CCCcccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecC-
Q psy4112 128 NDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNI- 205 (284)
Q Consensus 128 ~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~- 205 (284)
++.+.+++||+|||||+||+|+|+|+++.|||.|+.+ |+++|+|++|+|||+|+|++... ..+.||.+||++++.+
T Consensus 77 ~~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~--~~~~~g~~gp~~~~~~~ 154 (560)
T PRK02106 77 NRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG--EDDYRGGDGPLSVTRGK 154 (560)
T ss_pred CCeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC--CccccCCCCCEEEeCCC
Confidence 7788999999999999999999999999999999988 89999999999999999998742 3457999999998754
Q ss_pred CcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccCC
Q psy4112 206 PYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS 284 (284)
Q Consensus 206 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~~ 284 (284)
.+ .++..+.|.++++++|++.. |+|++.. .|++.++.+|.+|.|+++..+||.+
T Consensus 155 ~~-----------------------~~~~~~~~~~a~~~lG~~~~~~~~~~~~--~g~~~~~~~~~~g~R~s~~~~~l~~ 209 (560)
T PRK02106 155 PG-----------------------TNPLFQAFVEAGVQAGYPRTDDLNGYQQ--EGFGPMDRTVTNGRRWSAARAYLDP 209 (560)
T ss_pred CC-----------------------CCHHHHHHHHHHHHcCCCcCCCCCCCCC--ceeEEEeeecCCCEEEChHHHhhcc
Confidence 22 56788999999999999986 8888776 8988888889999999999999863
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.5e-37 Score=306.23 Aligned_cols=195 Identities=39% Similarity=0.685 Sum_probs=166.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc---ccccccccccc-ccCCcccccccccCCCCCccccCCCCCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN---IYTNIPLLAHF-NSLTHFNWGYKLEKNEEHPQCLGMYNDQC 131 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 131 (284)
||||||+|++|+++|.||+|+++.+|||||+|+... ...+.|..... ...+.++|.|.++||. .+.++.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~ 74 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP------HMNNRRV 74 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC------CCCCceE
Confidence 899999999999999999997558999999998642 33445543222 2235578999999988 6677889
Q ss_pred ccCcccccCCccccccccccCCChhhHHHHHh-cCCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecCCcchh
Q psy4112 132 PCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNL 210 (284)
Q Consensus 132 ~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~-~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~~~~~~ 210 (284)
.+++||+|||||+||+|+|+|+++.|||.|++ .|+++|+|++|+|||+|+|++.+. ..+.||.+||+.+..++.
T Consensus 75 ~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~--~~~~~g~~G~~~v~~~~~--- 149 (532)
T TIGR01810 75 GHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG--EKPYRGHDGPIKVRRGPA--- 149 (532)
T ss_pred eeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC--CcccCCCCCCEEEecCCC---
Confidence 99999999999999999999999999999998 589999999999999999998764 246899999999886555
Q ss_pred hhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccC
Q psy4112 211 LTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283 (284)
Q Consensus 211 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~ 283 (284)
.++..+.|.++++++|++.. |+|+... .|++.++.+|++|+|+|+..+||.
T Consensus 150 --------------------~~~~~~~~~~a~~~~G~~~~~~~~~~~~--~g~~~~~~~~~~g~r~s~~~~~l~ 201 (532)
T TIGR01810 150 --------------------DNPLFQAFIEAGVEAGYNKTPDVNGFRQ--EGFGPMDSTVHNGRRVSAARAYLH 201 (532)
T ss_pred --------------------CCHHHHHHHHHHHHcCCCccCCCCCCCc--cceEEEEEEcCCCEEEcHHHHHhh
Confidence 56788999999999999986 7887766 788887788899999999999986
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=302.23 Aligned_cols=202 Identities=37% Similarity=0.654 Sum_probs=176.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccc-ccccccccccccCC-cccccccccCCCCCccccCCCC
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENI-YTNIPLLAHFNSLT-HFNWGYKLEKNEEHPQCLGMYN 128 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~p~~~~~~~~~~~~ 128 (284)
...+||+||||+|.+||++|.||+ +++.+|||||+|+.... ..++|......... .++|.|.++|+. ++.+
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~------~~~~ 76 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP------HLRG 76 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc------CCCC
Confidence 356799999999999999999999 58999999999986543 56677665555443 789999999988 7888
Q ss_pred CCcccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCC--CCCCCcccCceeecC
Q psy4112 129 DQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEFLD--ADIHSREGPLKVTNI 205 (284)
Q Consensus 129 ~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~~~--~~~hG~~Gpl~v~~~ 205 (284)
+.+.++|||+|||||+||+|+|+|+++.|||.|+.. |+++|.|++|+|||+|+|++.+...+ ...||..||+.+...
T Consensus 77 r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~ 156 (542)
T COG2303 77 RELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPP 156 (542)
T ss_pred ccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCC
Confidence 999999999999999999999999999999999886 88999999999999999998776422 347999999998766
Q ss_pred CcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccCC
Q psy4112 206 PYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS 284 (284)
Q Consensus 206 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~~ 284 (284)
.. ..++...|.++++++|++.. |+|+... .|++.++.++.+|.|+|+..+||.+
T Consensus 157 ~~-----------------------~~~~~~a~~~a~~~~G~~~~~~~~~~~~--~g~g~~~~~~~~g~r~sa~~a~l~~ 211 (542)
T COG2303 157 RS-----------------------PNPIARAFIEAGEQLGFPTTPDPNGADQ--EGFGPYCVTICNGRRWSAARAYLKP 211 (542)
T ss_pred CC-----------------------chHHHHHHHHHHHHcCCCcCcccccCCC--CCcccceeeccCCeEeechhhcchh
Confidence 33 57899999999999999997 7999988 8999888888899999999999864
No 5
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.1e-36 Score=278.98 Aligned_cols=196 Identities=36% Similarity=0.619 Sum_probs=157.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccccccccc-cccccCCcccccccccCCCCCccccCCCCCCccc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLL-AHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPC 133 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~~-~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~~ 133 (284)
|||||||||++|+++|.||+++++.+|||||+|++.......+.. ........++|.+.+.|+. .++++.+.+
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 74 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP------FLNGRTINW 74 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE------CTTTTSEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc------ccccceeee
Confidence 899999999999999999999766899999999987543322222 1222345688888888876 677788889
Q ss_pred CcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceee-cCCcchhh
Q psy4112 134 PRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVT-NIPYQNLL 211 (284)
Q Consensus 134 ~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~-~~~~~~~~ 211 (284)
++|++|||||+||+|+|+|+++.||+.|+.. |.++|+|++|+|||+++|+++.+. ...|+.+++++++ .+.+
T Consensus 75 ~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~--~~~~g~~~~~~v~~~~~~---- 148 (296)
T PF00732_consen 75 PRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS--SDLHGVDGPLPVSSSPPY---- 148 (296)
T ss_dssp EEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB--GGGSCBSSSEEEHHHCSC----
T ss_pred ecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc--ccccccccccccccccCC----
Confidence 9999999999999999999999999999987 888999999999999999998874 6789999999983 3332
Q ss_pred hhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccC
Q psy4112 212 TEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283 (284)
Q Consensus 212 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~ 283 (284)
..+..+.|.++++++|++.. |++++.. +|+|.....|.+|+|+|+..+||.
T Consensus 149 -------------------~~~~~~~~~~a~~~~G~~~~~~~~~~~~--~g~~~~~~~~~~g~r~s~~~~~L~ 200 (296)
T PF00732_consen 149 -------------------PSPMNQALMDAAEELGIPVPQDFNGCDP--CGFCMTGFNCPNGARSSAATTYLP 200 (296)
T ss_dssp -------------------HCTHHHHHHHHHHHTTHHBCSCTTSSTC--SEEEECEECECTTCBBHHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHcCCccccccccccc--cccccccccccchhceehhhcccc
Confidence 56778999999999999954 8888877 999987778999999999999984
No 6
>PLN02785 Protein HOTHEAD
Probab=99.94 E-value=6.4e-27 Score=234.33 Aligned_cols=170 Identities=23% Similarity=0.329 Sum_probs=125.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccccccccccccccCCcccccccccCCCCCccccCCCCCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQC 131 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 131 (284)
...|||||||+|++||++|.+|++ +.+|||||+|++......+.... .+....++|.|.+.||. ...++.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~------~~~~~~~ 123 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQA------FISTDGV 123 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCcccccc------ccCCCce
Confidence 557999999999999999999999 58999999998642111221111 12234578999998887 5567888
Q ss_pred ccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecCCcchhh
Q psy4112 132 PCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLL 211 (284)
Q Consensus 132 ~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~~~~~~~ 211 (284)
.++|||+|||||+||+|+|.|++++||+. .||+|++++|||+++|+.... .+.
T Consensus 124 ~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-----------------~~~---- 176 (587)
T PLN02785 124 INARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-----------------WPK---- 176 (587)
T ss_pred eccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc-----------------CCC----
Confidence 99999999999999999999999999963 689999999999999975210 011
Q ss_pred hhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCccCCCCCCC-CCcccccccccc--cCCcccchhh
Q psy4112 212 TEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEP-ATEGFSKLQSTL--SKGQRYSANR 279 (284)
Q Consensus 212 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~D~n~~~~-~~~G~~~~~~ti--~~G~R~sa~~ 279 (284)
..+....|++|++++|++. +|+... ...|.. ...++ ++|.|+++++
T Consensus 177 -------------------~~~~~~~~~~a~~e~G~~~--~n~~~~d~~~G~~-~g~~i~~~~g~R~saa~ 225 (587)
T PLN02785 177 -------------------VAPWQAALRDSLLEVGVSP--FNGFTYDHVYGTK-VGGTIFDEFGRRHTAAE 225 (587)
T ss_pred -------------------cChHHHHHHHHHHHcCCCc--cCCCCCCCcccee-eeEEEeCCCCEEcCHHH
Confidence 3467789999999999973 343222 001111 11234 5799999887
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.35 E-value=2.2e-12 Score=128.36 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=80.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccc-------ccc----ccc--cc----ccc-------------
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIY-------TNI----PLL--AH----FNS------------- 104 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~-------~~~----p~~--~~----~~~------------- 104 (284)
||+||||+|++|+++|..|++ .+.+|+|||+|...... ..+ +.. .. .++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT 79 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence 799999999999999999999 58999999999865310 000 000 00 000
Q ss_pred CCcccccccccCCCCCcccc-C-----CCCCCc-ccCcccccCCccccccccccCCChhhHHHHHhcCCCCC--ChhhHH
Q psy4112 105 LTHFNWGYKLEKNEEHPQCL-G-----MYNDQC-PCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGW--GYDSVL 175 (284)
Q Consensus 105 ~~~~~w~~~~~p~~~~~~~~-~-----~~~~~~-~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW--~~~~l~ 175 (284)
.....|+-. |.. .... + .....+ ...|-|.|||+|.+|++.+.|.++.+- .| .+ .|| +|++|.
T Consensus 80 ~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~ 151 (544)
T TIGR02462 80 LDPTAWSAS--IES--FFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWD 151 (544)
T ss_pred CCccccccC--CCc--ceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHH
Confidence 001112211 000 0000 0 001111 144778999999999999999999652 11 23 699 999999
Q ss_pred HHHHHHhhccCCC
Q psy4112 176 KYFLKSENNTSEF 188 (284)
Q Consensus 176 pyf~k~E~~~~~~ 188 (284)
|||.++|++++..
T Consensus 152 PyY~~Ae~~~gv~ 164 (544)
T TIGR02462 152 RLYTKAESLIGTS 164 (544)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998874
No 8
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.11 E-value=2.8e-06 Score=81.60 Aligned_cols=37 Identities=46% Similarity=0.759 Sum_probs=34.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.+||+||||+|+||+++|.+|++ .+.+|+|||++...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~-~G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 46999999999999999999999 48999999999866
No 9
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.09 E-value=8.3e-06 Score=77.82 Aligned_cols=39 Identities=31% Similarity=0.564 Sum_probs=35.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENI 92 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~ 92 (284)
..+|+||||+|+||+++|..+++ .+.+|+|||+++....
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~-~G~~V~lid~~~k~Gr 40 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKGPKLGR 40 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh-cCCEEEEEecCccccc
Confidence 46999999999999999999999 6999999999987644
No 10
>KOG1298|consensus
Probab=98.01 E-value=6.3e-06 Score=78.30 Aligned_cols=39 Identities=31% Similarity=0.467 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....+|+||||+|.+|+.+|+.|+++ +++|+|||+.=.+
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~E 80 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSE 80 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEeccccc
Confidence 35679999999999999999999995 9999999987544
No 11
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.98 E-value=7e-06 Score=79.74 Aligned_cols=37 Identities=35% Similarity=0.599 Sum_probs=33.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+.||+||||+|++|+++|..|++ .+.+|+|||++...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~-~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR-EGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh-CCCeEEEEEcCCCC
Confidence 46999999999999999999999 59999999998754
No 12
>PRK10015 oxidoreductase; Provisional
Probab=97.96 E-value=8.4e-06 Score=79.32 Aligned_cols=37 Identities=32% Similarity=0.670 Sum_probs=33.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.+||+||||+|++|+++|..|++ .+.+|+|||++...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~-~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 46999999999999999999999 59999999998754
No 13
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.87 E-value=1e-05 Score=71.71 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=29.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|++|||+|++|+++|..|+++ +++|+|+|+...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLS 51 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCC
Confidence 469999999999999999999994 999999998743
No 14
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.83 E-value=1.9e-05 Score=71.18 Aligned_cols=35 Identities=40% Similarity=0.652 Sum_probs=32.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
||++|||+|++|+++|..|++ .+.+|+|||++...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence 799999999999999999999 59999999999754
No 15
>PLN02985 squalene monooxygenase
Probab=97.80 E-value=7.7e-05 Score=74.36 Aligned_cols=38 Identities=32% Similarity=0.477 Sum_probs=34.0
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-...+|+||||+|++|+++|..|++ .+.+|+|||+...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcCC
Confidence 3567999999999999999999999 5999999998753
No 16
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.79 E-value=2.3e-05 Score=72.14 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++||||||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHh-cccccccchhcccc
Confidence 5899999999999999999999 59999999998765
No 17
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.78 E-value=2.6e-05 Score=70.91 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.+||++|||+|++|+++|..|++ .+.+|+|||++...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 46999999999999999999999 59999999998643
No 18
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.77 E-value=2.2e-05 Score=76.13 Aligned_cols=36 Identities=39% Similarity=0.621 Sum_probs=27.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN 91 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~ 91 (284)
||+||||+|++|+++|..+++ .+.+|+|||++....
T Consensus 1 ydviIIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~g 36 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE-KGARVLVLERNKRVG 36 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSS-
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCcccc
Confidence 899999999999999999999 599999999997653
No 19
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.77 E-value=3.3e-05 Score=75.77 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=34.7
Q ss_pred CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.....|||||||+|++|+++|..|++ .+.+|+|||+...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence 34567999999999999999999999 5999999998753
No 20
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.76 E-value=2.4e-05 Score=74.72 Aligned_cols=32 Identities=38% Similarity=0.707 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
|||||||+|++|+++|..|++ .+.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 799999999999999999999 59999999997
No 21
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.75 E-value=3.1e-05 Score=70.43 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=33.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
..++|++|||+|++|+++|..|++ .+.+|+|||+...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 346999999999999999999999 6999999998754
No 22
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.74 E-value=4e-05 Score=55.62 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=28.2
Q ss_pred EECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112 59 IIGGGVGGSVVANRLSENPKWKVLLLESGEDEN 91 (284)
Q Consensus 59 ivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~ 91 (284)
|||+|++|+++|.+|++. +.+|+|+|+.....
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence 899999999999999994 99999999987653
No 23
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.72 E-value=2.9e-05 Score=68.98 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.+.|+||||+|++|+++|+.|++ .+.+|+++|+.-.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~ls 64 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERKLS 64 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh-CCceEEEEEeecc
Confidence 46899999999999999999999 5999999998643
No 24
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.72 E-value=3.6e-05 Score=75.26 Aligned_cols=36 Identities=36% Similarity=0.418 Sum_probs=33.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..++||||||+|.+|+++|.++++ .+.+|+|||+++
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~-~G~~V~vlEk~~ 37 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAARE-AGASVLLLEAAP 37 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 457999999999999999999999 599999999876
No 25
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.70 E-value=3.9e-05 Score=72.26 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.+||++|||+|.+|+++|..|++ .+.+|+|||++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence 35999999999999999999999 4999999999853
No 26
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.69 E-value=3.9e-05 Score=70.61 Aligned_cols=32 Identities=44% Similarity=0.667 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
|+||||+|.+|+++|..|++ .+.+|+|||++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~-~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-RGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-TTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH-CCCeEEEEeecc
Confidence 89999999999999999999 699999999993
No 27
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.68 E-value=5.2e-05 Score=72.61 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=36.7
Q ss_pred ccCCCCCCCcccEEEECCChHHHHHHHHHhcCCC-CeEEEeccCC
Q psy4112 45 FLGNKPILSEYDFVIIGGGVGGSVVANRLSENPK-WKVLLLESGE 88 (284)
Q Consensus 45 ~~~~~~~~~~~d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~ 88 (284)
.|..+.....+|++|||+|.+|+++|..|++..+ .+|+|||++.
T Consensus 21 ~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 21 AWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 3555556778999999999999999999998326 4899999974
No 28
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.68 E-value=4.9e-05 Score=72.01 Aligned_cols=37 Identities=30% Similarity=0.554 Sum_probs=33.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+|+||||+|++|+++|..|++ .+.+|+|+|++...
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCc
Confidence 46899999999999999999999 59999999998764
No 29
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.67 E-value=5.1e-05 Score=72.62 Aligned_cols=38 Identities=32% Similarity=0.581 Sum_probs=34.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...+|++|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCcc
Confidence 446999999999999999999999 59999999998754
No 30
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.67 E-value=4.4e-05 Score=74.76 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=35.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++||+||||+|.+||++|..|++ .+++||+||+....
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~y 39 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYY 39 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCc
Confidence 467999999999999999999999 69999999998765
No 31
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.66 E-value=4.7e-05 Score=72.35 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=32.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.++||+||||+|++|+++|..|++ .+.+|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 356999999999999999999999 599999999875
No 32
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.65 E-value=4.7e-05 Score=71.83 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
||+||||+|.+|+++|..|++ .+.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 699999999999999999999 4899999999753
No 33
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.64 E-value=5.4e-05 Score=75.03 Aligned_cols=38 Identities=34% Similarity=0.545 Sum_probs=34.2
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+..+||+||||+|.+|+.+|..|++ .+.+|+|||++..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~-rG~~V~LlEk~d~ 40 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAG-RGLKVLLCEKDDL 40 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence 3567999999999999999999999 4999999999953
No 34
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.64 E-value=5.2e-05 Score=72.37 Aligned_cols=34 Identities=35% Similarity=0.659 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHH--hcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRL--SENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l--~~~~~~~vl~lE~G~~~ 90 (284)
||||||+|+||+++|.+| ++ .+.+|+|||..+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCccc
Confidence 899999999999999999 66 69999999998765
No 35
>PLN02463 lycopene beta cyclase
Probab=97.63 E-value=6.5e-05 Score=73.66 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=34.0
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-...||+||||+|++|+++|..|++ .+.+|+|||..+.
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~~ 62 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSPL 62 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCcc
Confidence 4557999999999999999999998 5999999998753
No 36
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.63 E-value=5.6e-05 Score=75.15 Aligned_cols=37 Identities=32% Similarity=0.618 Sum_probs=33.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||+||||+|..|+.+|..|++ .+.+|+|||++..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~-rGl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAG-RGLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 456999999999999999999999 5999999999743
No 37
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.62 E-value=6e-05 Score=73.26 Aligned_cols=35 Identities=37% Similarity=0.683 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+.||+||||+|++|+.+|.+|++ .+.+|+|||+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence 35999999999999999999999 599999999875
No 38
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.60 E-value=5.7e-05 Score=74.71 Aligned_cols=37 Identities=35% Similarity=0.557 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+|+||||+|..|+++|..|++ .+++|+|+|+....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~ 38 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRV 38 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCC
Confidence 46999999999999999999999 69999999976544
No 39
>PRK09126 hypothetical protein; Provisional
Probab=97.60 E-value=6.3e-05 Score=71.45 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
++|+||||+|++|+++|..|++ .+.+|+|+|+...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence 5899999999999999999999 5999999999875
No 40
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.60 E-value=6.4e-05 Score=70.80 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+|++|||+|.+|+++|..|++ .+.+|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 699999999999999999999 4999999999753
No 41
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.59 E-value=7.1e-05 Score=71.31 Aligned_cols=37 Identities=41% Similarity=0.526 Sum_probs=33.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...+|++|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence 346899999999999999999999 5999999999763
No 42
>PRK08013 oxidoreductase; Provisional
Probab=97.59 E-value=7.6e-05 Score=71.56 Aligned_cols=35 Identities=37% Similarity=0.469 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.+|++|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence 5899999999999999999999 5999999999875
No 43
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.58 E-value=8e-05 Score=70.71 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=33.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...+|+||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence 346899999999999999999999 5999999999864
No 44
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.58 E-value=6.7e-05 Score=71.98 Aligned_cols=34 Identities=44% Similarity=0.631 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
||||||+|.+|+.+|.++++ .+.+|+|||+++..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae-~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE-AGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH-TTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhh-hcCeEEEEEeeccc
Confidence 89999999999999999999 59999999999863
No 45
>PRK06116 glutathione reductase; Validated
Probab=97.58 E-value=7.5e-05 Score=72.78 Aligned_cols=34 Identities=44% Similarity=0.722 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.+||+||||+|++|+.+|.+|++ .+.+|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 46999999999999999999999 59999999986
No 46
>PRK07045 putative monooxygenase; Reviewed
Probab=97.58 E-value=7.5e-05 Score=71.05 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=34.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+|++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCcc
Confidence 46899999999999999999999 59999999998854
No 47
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.57 E-value=7e-05 Score=72.06 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+|+||||+|++|+++|..|++ .+.+|+|||+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence 699999999999999999999 5999999998643
No 48
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.56 E-value=8.3e-05 Score=71.16 Aligned_cols=34 Identities=38% Similarity=0.619 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
++|++|||+|++|+++|..|++ .+.+|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 4899999999999999999999 599999999876
No 49
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=8.3e-05 Score=69.31 Aligned_cols=36 Identities=28% Similarity=0.592 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.||+||||+|.+|+++|..+++ -+.+|||||+....
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HI 36 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHI 36 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccC
Confidence 4899999999999999998888 59999999999875
No 50
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.55 E-value=8.6e-05 Score=72.09 Aligned_cols=35 Identities=34% Similarity=0.574 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+||++|||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence 36999999999999999999999 599999999875
No 51
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.55 E-value=8.3e-05 Score=70.60 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
|+||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence 89999999999999999998 59999999987643
No 52
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.55 E-value=8.8e-05 Score=69.83 Aligned_cols=34 Identities=38% Similarity=0.607 Sum_probs=31.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
||||||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCcc
Confidence 89999999999999999999 59999999999754
No 53
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.55 E-value=7.8e-05 Score=72.92 Aligned_cols=34 Identities=44% Similarity=0.766 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
++||++|||+|++|..+|.++++ .+.+|+|+|++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAE-HGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEeccc
Confidence 36999999999999999999999 59999999985
No 54
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.54 E-value=8.2e-05 Score=71.30 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=31.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+|+||||+|..|+++|.+|++ .+.+|+|||++..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 699999999999999999999 4999999999863
No 55
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.54 E-value=8.2e-05 Score=71.09 Aligned_cols=36 Identities=44% Similarity=0.725 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
.+|++|||+|.+|+++|..|++. ++.+|+|||++..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 48999999999999999999983 3899999999854
No 56
>PLN02661 Putative thiazole synthesis
Probab=97.53 E-value=7.4e-05 Score=70.98 Aligned_cols=39 Identities=36% Similarity=0.561 Sum_probs=34.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..++|++|||+|++|+++|..|+++++.+|+|||++...
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 457899999999999999999997568999999987543
No 57
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.53 E-value=9.4e-05 Score=71.03 Aligned_cols=35 Identities=34% Similarity=0.682 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+|++|||+|++|+++|.+|++ .+.+|+|||++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 799999999999999999998 58999999986543
No 58
>PRK06185 hypothetical protein; Provisional
Probab=97.52 E-value=9.9e-05 Score=70.53 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
..++|++|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~-~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLAR-AGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 356999999999999999999999 5999999999864
No 59
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.50 E-value=9.9e-05 Score=72.27 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~ 88 (284)
.++|++|||+|.+|+++|.+|++. ++.+|+|||++.
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 358999999999999999999984 489999999975
No 60
>PRK06370 mercuric reductase; Validated
Probab=97.50 E-value=0.00011 Score=71.86 Aligned_cols=36 Identities=36% Similarity=0.560 Sum_probs=32.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..+||+||||+|++|..+|.++++ .+.+|+|+|++.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 38 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL 38 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 456999999999999999999999 599999999863
No 61
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.48 E-value=0.00012 Score=69.69 Aligned_cols=34 Identities=32% Similarity=0.665 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
++|++|||+|++|+++|..|++ .+.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence 5899999999999999999999 599999999875
No 62
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.48 E-value=0.00011 Score=73.67 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+||+||||+|..|+.+|..|++ .+.+|+|||++.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~-rG~~V~LlEk~d 39 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCAL-RGLRCILVERHD 39 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence 46999999999999999999999 599999999964
No 63
>PRK07121 hypothetical protein; Validated
Probab=97.48 E-value=0.00012 Score=72.35 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.+|+++|.++++ .+.+|+|||+...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae-~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAA-AGARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 47999999999999999999999 5999999999765
No 64
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.47 E-value=0.00012 Score=69.67 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
.||++|||+|++|+++|..|++. ++.+|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 38999999999999999999984 2599999999864
No 65
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.47 E-value=0.00012 Score=71.78 Aligned_cols=35 Identities=51% Similarity=0.788 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..||+||||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 37 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKGK 37 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 46999999999999999999999 599999999863
No 66
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.47 E-value=0.00011 Score=71.73 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
+||++|||+|++|..+|.++++ .+.+|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence 5999999999999999999999 59999999984
No 67
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.47 E-value=0.00012 Score=74.26 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..|||||||+|+||+.+|..+++ .+.+|+|||...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence 46999999999999999999999 599999999875
No 68
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.46 E-value=0.00011 Score=71.39 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
|+||||+|++|+.+|..+++ .+.+|+|||+++..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr-~G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR-AGAKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TTS-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHH-CCCEEEEEECCccC
Confidence 89999999999999999999 59999999999865
No 69
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.46 E-value=0.00013 Score=72.12 Aligned_cols=35 Identities=43% Similarity=0.597 Sum_probs=32.5
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
||+||||+|.+|+++|..|++ .+.+|+|||+....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~-~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV-KGAKVLVLERYLIP 35 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH-CCCcEEEEECCCCC
Confidence 699999999999999999999 59999999998654
No 70
>KOG0029|consensus
Probab=97.45 E-value=0.00014 Score=72.39 Aligned_cols=40 Identities=25% Similarity=0.431 Sum_probs=35.8
Q ss_pred CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
......+|||||+|.+|+++|..|.+ -+.+|+||||....
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRV 50 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCc
Confidence 34667899999999999999999999 59999999998765
No 71
>PRK11445 putative oxidoreductase; Provisional
Probab=97.45 E-value=0.00012 Score=69.04 Aligned_cols=34 Identities=35% Similarity=0.555 Sum_probs=31.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.||++|||+|++|+++|..|++ . .+|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence 3899999999999999999998 5 89999998764
No 72
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.45 E-value=0.00013 Score=65.98 Aligned_cols=33 Identities=36% Similarity=0.567 Sum_probs=30.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
||++|||+|++|+.+|..|.+ .+.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 799999999999999999998 599999999875
No 73
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.44 E-value=0.00014 Score=68.96 Aligned_cols=35 Identities=37% Similarity=0.531 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcC--CCCeEEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G 87 (284)
..+|++|||+|++|+++|..|++. .+.+|+|||+-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 458999999999999999999872 29999999984
No 74
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.44 E-value=0.00014 Score=70.95 Aligned_cols=32 Identities=50% Similarity=0.756 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
+||+||||+|++|+.+|.+|++ .+.+|+|||+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 4899999999999999999999 5999999998
No 75
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.43 E-value=0.00015 Score=68.58 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPK-WKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~~ 90 (284)
|++|||+|++|+++|..|++ .+ .+|+|+|+....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCcc
Confidence 89999999999999999999 58 999999998754
No 76
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.43 E-value=0.00019 Score=72.00 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=34.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...++||||||+|.||+.+|.++++ .+.+|+|||++...
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae-~G~~VilleK~~~~ 51 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARR-AGRRVLVVTKAALD 51 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHH-cCCeEEEEEccCCC
Confidence 3557999999999999999999999 58999999998754
No 77
>PLN02697 lycopene epsilon cyclase
Probab=97.43 E-value=0.00014 Score=72.86 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
...||+||||+|++|+++|..|++ .+.+|+|||.+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPDL 141 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCcc
Confidence 346999999999999999999999 599999999863
No 78
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.42 E-value=0.00015 Score=70.70 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..||+||||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence 46999999999999999999999 599999999864
No 79
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.42 E-value=0.00015 Score=72.02 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=34.1
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..++||||||+|.+|+++|.++++ .+.+|+|||+.+..
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~-~Ga~VivlEK~~~~ 96 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKD-AGMNPVILEKMPVA 96 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 457999999999999999999999 59999999988653
No 80
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.42 E-value=0.00015 Score=74.01 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=33.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.||+||||+|..|+.+|..|++ .+.+|+|||++.
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~-rGl~V~LvE~~d 104 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAAT-RGLRVGLVERED 104 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence 355999999999999999999999 599999999984
No 81
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.42 E-value=0.00016 Score=70.55 Aligned_cols=34 Identities=41% Similarity=0.676 Sum_probs=31.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.+||+||||+|++|..+|.+|++ .+.+|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 45999999999999999999999 59999999984
No 82
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.41 E-value=0.00016 Score=69.25 Aligned_cols=34 Identities=32% Similarity=0.572 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
..+|++|||+|++|+++|..|++ .+.+|+|||+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 35899999999999999999999 59999999986
No 83
>PRK08244 hypothetical protein; Provisional
Probab=97.40 E-value=0.00016 Score=71.21 Aligned_cols=36 Identities=31% Similarity=0.530 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++||+|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 4899999999999999999999 59999999998654
No 84
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.40 E-value=0.00016 Score=70.69 Aligned_cols=35 Identities=40% Similarity=0.631 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+||+||||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence 46999999999999999999999 599999999864
No 85
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.40 E-value=0.00015 Score=69.17 Aligned_cols=34 Identities=35% Similarity=0.863 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
|+||||+|++|+++|.+|++. ++++|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 899999999999999999973 4899999999873
No 86
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.40 E-value=0.00015 Score=71.73 Aligned_cols=35 Identities=31% Similarity=0.600 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
+|++|||+|.+|+++|..|++. ++.+|+|||++..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 6999999999999999999984 6899999999753
No 87
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.40 E-value=0.00017 Score=70.12 Aligned_cols=34 Identities=44% Similarity=0.717 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHhcC---CCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~ 88 (284)
|||||||+|++|+++|..|++. .+.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 7999999999999999999973 389999999953
No 88
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.39 E-value=0.00017 Score=70.85 Aligned_cols=32 Identities=47% Similarity=0.648 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
+||+||||+|++|..+|.++++ .+.+|+|||.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~ 34 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEG 34 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 5999999999999999999999 5999999996
No 89
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.38 E-value=0.00017 Score=71.68 Aligned_cols=38 Identities=32% Similarity=0.627 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
...+|+||||+|..|+++|..|++. ++.+|+|||+...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 3569999999999999999999984 6889999998754
No 90
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.37 E-value=0.00021 Score=73.15 Aligned_cols=34 Identities=41% Similarity=0.728 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+||||||+|.+|+++|..|++ .+.+|+|||++.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 5899999999999999999999 599999999985
No 91
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.37 E-value=0.0002 Score=72.02 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..||++|||+|+||+.+|..|++ .+.+|+|||++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence 45999999999999999999999 599999999864
No 92
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.36 E-value=0.0002 Score=68.10 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+|++|||+|++|+++|..|++ .+.+|+|+|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence 3799999999999999999999 599999999874
No 93
>PRK06184 hypothetical protein; Provisional
Probab=97.36 E-value=0.00021 Score=70.64 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=33.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+++||+|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence 46899999999999999999999 59999999997644
No 94
>PTZ00058 glutathione reductase; Provisional
Probab=97.36 E-value=0.00038 Score=70.17 Aligned_cols=35 Identities=43% Similarity=0.680 Sum_probs=32.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
..+||+||||+|++|..+|.++++ .+.+|+|||++
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHH-cCCeEEEEecc
Confidence 357999999999999999999999 59999999975
No 95
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.35 E-value=0.00021 Score=71.63 Aligned_cols=35 Identities=31% Similarity=0.613 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.++||||||+|.+|+++|..+++ .+.+|+|||+++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 56999999999999999999999 599999999988
No 96
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.35 E-value=0.0002 Score=70.04 Aligned_cols=33 Identities=36% Similarity=0.538 Sum_probs=30.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
||+||||+|++|..+|.++++ .+.+|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 799999999999999999999 599999999853
No 97
>PLN02576 protoporphyrinogen oxidase
Probab=97.35 E-value=0.00021 Score=70.30 Aligned_cols=38 Identities=29% Similarity=0.411 Sum_probs=34.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCC-CCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENP-KWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~-~~~vl~lE~G~~~ 90 (284)
..++|+||||+|.+|+++|.+|++ . +.+|+|+|+....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rv 48 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRV 48 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCC
Confidence 556899999999999999999998 6 7999999998654
No 98
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.34 E-value=0.0002 Score=71.20 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+| +|+++|.++++ .+.+|+|||+.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~-~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAR-EGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHH-CCCcEEEEecCCC
Confidence 47999999999 99999999999 5999999998764
No 99
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00024 Score=66.96 Aligned_cols=38 Identities=42% Similarity=0.539 Sum_probs=33.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..++|+||||+|.+|+++|..|++ .+.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCccC
Confidence 356999999999999999999999 48899999998743
No 100
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.33 E-value=0.00023 Score=69.71 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.+||+||||+|++|..+|.++++ .+.+|+|||++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 35999999999999999999999 59999999986
No 101
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.33 E-value=0.00022 Score=72.62 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=34.5
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...++||||||+|.||+.+|.++++ .+.+|+|||++...
T Consensus 26 ~~~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~lveK~~~~ 64 (617)
T PTZ00139 26 IDHTYDAVVVGAGGAGLRAALGLVE-LGYKTACISKLFPT 64 (617)
T ss_pred cccccCEEEECccHHHHHHHHHHHH-cCCcEEEEeccCCC
Confidence 3457999999999999999999998 58999999998653
No 102
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.32 E-value=0.00022 Score=68.19 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.+|++|||+|++|+++|..|++ .+++|+|||+-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence 5899999999999999999999 59999999998
No 103
>PRK07190 hypothetical protein; Provisional
Probab=97.32 E-value=0.00023 Score=70.47 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=33.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCcc
Confidence 45899999999999999999998 59999999998754
No 104
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.32 E-value=0.00022 Score=68.14 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.+|++|||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence 4899999999999999999999 5999999999874
No 105
>PLN02268 probable polyamine oxidase
Probab=97.32 E-value=0.00024 Score=68.73 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=31.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++||||+|.+|+++|.+|.+ .+.+|+||||....
T Consensus 2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~ 35 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRI 35 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 79999999999999999998 59999999998765
No 106
>PRK07208 hypothetical protein; Provisional
Probab=97.30 E-value=0.00028 Score=69.10 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=33.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....|+||||+|.+|+++|.+|++ .+.+|+|+|+....
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~ 39 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVV 39 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 356799999999999999999999 59999999996644
No 107
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.30 E-value=0.00027 Score=69.58 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+||+||||+|++|..+|.++++ .+.+|+|||+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 46999999999999999999999 599999999753
No 108
>PRK13748 putative mercuric reductase; Provisional
Probab=97.29 E-value=0.00026 Score=70.90 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.+||+||||+|++|+.+|.+|++ .+.+|+|||++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 46999999999999999999999 59999999986
No 109
>PRK06996 hypothetical protein; Provisional
Probab=97.29 E-value=0.00031 Score=67.34 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=32.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCC---CCeEEEeccCC
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENP---KWKVLLLESGE 88 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~---~~~vl~lE~G~ 88 (284)
....+|++|||+|++|+++|..|++.. +++|+|+|+..
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 356799999999999999999999842 35799999975
No 110
>PRK06834 hypothetical protein; Provisional
Probab=97.28 E-value=0.00027 Score=69.93 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 35899999999999999999999 5999999998764
No 111
>PRK06847 hypothetical protein; Provisional
Probab=97.28 E-value=0.00031 Score=66.24 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+..|++|||+|++|+++|..|++ .+.+|+|+|+...
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 45799999999999999999999 5999999998764
No 112
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.27 E-value=0.00028 Score=69.47 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=32.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
-|+||||+|.+|+++|..|++ .+++|+|+|+....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~-~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK-RGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 589999999999999999999 59999999988654
No 113
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.27 E-value=0.00027 Score=68.59 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPK-WKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~~ 90 (284)
||||||+|.+|+++|.++++ .+ .+|+|||+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~-~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK-AGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH-cCCccEEEEecCCCC
Confidence 89999999999999999999 58 999999988653
No 114
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00029 Score=65.81 Aligned_cols=34 Identities=44% Similarity=0.675 Sum_probs=30.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCe-EEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G 87 (284)
+.||+||||+||+|+++|..+++ .+++ ++|+|.+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~ 36 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGG 36 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecC
Confidence 46999999999999999999999 5888 7777775
No 115
>PRK14694 putative mercuric reductase; Provisional
Probab=97.26 E-value=0.00028 Score=69.27 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=32.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..||+||||+|++|..+|.+|++ .+.+|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence 46999999999999999999999 599999999874
No 116
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.26 E-value=0.00032 Score=69.76 Aligned_cols=37 Identities=38% Similarity=0.542 Sum_probs=32.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~ 88 (284)
..++||||||+|..|+++|..|++. +..+|+|||+..
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 3569999999999999999999984 457999999985
No 117
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.25 E-value=0.00029 Score=70.02 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=31.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEecc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLES 86 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~ 86 (284)
...+|+||||+|.+|+++|..|++. ++++|+|||+
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 3568999999999999999999984 5799999999
No 118
>PRK06753 hypothetical protein; Provisional
Probab=97.25 E-value=0.0003 Score=66.33 Aligned_cols=34 Identities=35% Similarity=0.548 Sum_probs=31.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
|+||||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcc
Confidence 79999999999999999999 59999999999764
No 119
>PRK07588 hypothetical protein; Provisional
Probab=97.24 E-value=0.00031 Score=66.88 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
|++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHH-CCCceEEEeCCCCc
Confidence 79999999999999999999 59999999998654
No 120
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.24 E-value=0.00032 Score=69.04 Aligned_cols=33 Identities=39% Similarity=0.628 Sum_probs=31.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
.+||+||||+|++|+.+|.++++ .+.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 46999999999999999999999 5999999998
No 121
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.23 E-value=0.00031 Score=67.74 Aligned_cols=34 Identities=35% Similarity=0.549 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCC--CeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPK--WKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~--~~vl~lE~G~~~ 90 (284)
+++|||+|.+|+++|..|++. + .+|+|+|+....
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~ 37 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRL 37 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCC
Confidence 589999999999999999984 5 899999997643
No 122
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.23 E-value=0.00033 Score=68.03 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCC---CCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENP---KWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~---~~~vl~lE~G~~~ 90 (284)
..|+||||+|.+|+++|.+|++.. +.+|+|+|+....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 369999999999999999999831 8999999997654
No 123
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.22 E-value=0.00033 Score=67.14 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.+|++|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4799999999999999999999 6999999999874
No 124
>PTZ00367 squalene epoxidase; Provisional
Probab=97.21 E-value=0.00036 Score=70.45 Aligned_cols=35 Identities=43% Similarity=0.745 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.++|+||||+|++|+++|..|++ .+.+|+|||+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 46999999999999999999999 599999999976
No 125
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.20 E-value=0.00047 Score=68.85 Aligned_cols=38 Identities=34% Similarity=0.395 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...+||+|||+|++|+++|..|++ .+.+|+|||+....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 567999999999999999999999 59999999998754
No 126
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.20 E-value=0.00035 Score=66.84 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
|+||||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-AGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCEEEEEeCCCc
Confidence 79999999999999999999 5999999999853
No 127
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.19 E-value=0.00039 Score=70.16 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.+|+++|.++++ .+.+|+|||+...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~-~G~~v~llEk~~~ 43 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARK-LGLDVVVLEKEPV 43 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 47999999999999999999999 5899999999865
No 128
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.18 E-value=0.00038 Score=70.50 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
..++|+||||+|.+|+++|.++++ .+.+|+|||++..
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae-~G~~VivlEk~~~ 45 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAA-RGLDTLVVEKSAH 45 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHH-CCCcEEEEEcCCC
Confidence 346999999999999999999999 5999999998864
No 129
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.18 E-value=0.00044 Score=65.73 Aligned_cols=36 Identities=36% Similarity=0.526 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..|++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCccc
Confidence 4799999999999999999999 59999999998653
No 130
>PRK07236 hypothetical protein; Provisional
Probab=97.17 E-value=0.00044 Score=65.88 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...|+||||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 45899999999999999999999 5999999998864
No 131
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.17 E-value=0.00037 Score=70.25 Aligned_cols=36 Identities=33% Similarity=0.584 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae-~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS-AGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence 45899999999999999999998 5999999998854
No 132
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.17 E-value=0.0004 Score=70.34 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lleK~~~ 41 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ-SGQSCALLSKVFP 41 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence 46899999999999999999998 5999999999854
No 133
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.16 E-value=0.00037 Score=71.09 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae-~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE-RGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH-CCCCEEEEeccCC
Confidence 46899999999999999999999 5999999999754
No 134
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.16 E-value=0.00038 Score=70.64 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~-~G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE-AGLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence 46999999999999999999999 5899999999754
No 135
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.16 E-value=0.00039 Score=70.48 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLAR-AGLSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence 46899999999999999999998 5899999999753
No 136
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.15 E-value=0.00043 Score=67.54 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=31.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++||||||+|.||+.+|..+. .+.+|+|||+++..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~--~G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR--KDLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc--cCCCEEEEecCCCC
Confidence 4689999999999999999974 48999999998754
No 137
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.15 E-value=0.0004 Score=70.62 Aligned_cols=37 Identities=38% Similarity=0.570 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 468999999999999999999983 3899999999864
No 138
>PRK07233 hypothetical protein; Provisional
Probab=97.13 E-value=0.00049 Score=65.84 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++||||+|.+|+++|..|++ .+.+|+|||+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~ 34 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQL 34 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCC
Confidence 58999999999999999999 59999999999765
No 139
>PRK06126 hypothetical protein; Provisional
Probab=97.13 E-value=0.00048 Score=68.76 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..++||+|||+|++|+++|..|++ .+++|+|||+.+..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~~~ 42 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-RGVDSILVERKDGT 42 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence 456999999999999999999999 59999999987643
No 140
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.13 E-value=0.00058 Score=58.29 Aligned_cols=33 Identities=45% Similarity=0.671 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
|++|||+|++|+.+|.+|++ .+.+|+++|..+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEecccc
Confidence 79999999999999999998 6999999987653
No 141
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.12 E-value=0.00045 Score=68.57 Aligned_cols=32 Identities=41% Similarity=0.665 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
.||+||||+|++|..+|.++++ .+.+|+|||.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 5999999999999999999999 5999999996
No 142
>KOG2415|consensus
Probab=97.11 E-value=0.00043 Score=66.73 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=33.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhc-----CCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSE-----NPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~-----~~~~~vl~lE~G~~~ 90 (284)
.+++|++|||+|++|+++|.||.+ +...+|+|+|.+...
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~ 117 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV 117 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence 467999999999999999999976 246799999988654
No 143
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.11 E-value=0.00058 Score=69.81 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+.+++||+|||+|++|+++|..|++..+.+|+|||+.+..
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 3568999999999999999999998238999999988654
No 144
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.11 E-value=0.00052 Score=68.61 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=34.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...+||+|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCC
Confidence 467999999999999999999999 59999999998743
No 145
>PLN02507 glutathione reductase
Probab=97.11 E-value=0.00046 Score=68.51 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=31.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
..+||+||||+|++|..+|.++++ .+.+|+|||.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 457999999999999999999999 5999999995
No 146
>PRK08275 putative oxidoreductase; Provisional
Probab=97.11 E-value=0.00047 Score=69.29 Aligned_cols=37 Identities=41% Similarity=0.687 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 458999999999999999999973 3689999999875
No 147
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.11 E-value=0.00044 Score=68.25 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=30.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+||||+|.+|+++|..|++ .+.+|+|||+....
T Consensus 1 vvVIGaG~~GL~aA~~La~-~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA-AGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHh-CCCcEEEEECCCCC
Confidence 5899999999999999999 59999999998765
No 148
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.10 E-value=0.00054 Score=58.74 Aligned_cols=32 Identities=38% Similarity=0.535 Sum_probs=25.2
Q ss_pred EEECCChHHHHHHHHHhcCCCCe-EEEeccCCcc
Q psy4112 58 VIIGGGVGGSVVANRLSENPKWK-VLLLESGEDE 90 (284)
Q Consensus 58 iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~~~ 90 (284)
+|||+|++|+++|.+|.+. +.+ |+|||++...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T---EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Confidence 6999999999999999995 888 9999998654
No 149
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.10 E-value=0.00051 Score=67.52 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+||||||+|.+|+.+|.++++ .+.+|+|||++..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae-~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK-KGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 799999999999999999999 5999999999753
No 150
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.09 E-value=0.00049 Score=70.37 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae-~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSE-HGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHh-cCCcEEEEEcCCC
Confidence 46899999999999999999998 5899999999864
No 151
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.09 E-value=0.00051 Score=68.04 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=30.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCC-CCeEEEecc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENP-KWKVLLLES 86 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~-~~~vl~lE~ 86 (284)
.+||+||||+|++|..+|.++++ . +.+|+|||+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~ 35 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDV 35 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEec
Confidence 46999999999999999999998 4 799999997
No 152
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.07 E-value=0.00051 Score=69.35 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
.++||||||+|.+|+.+|.++++. ++.+|+|||++..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 358999999999999999999973 3589999999864
No 153
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.05 E-value=0.00064 Score=68.42 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|+||||+|.+|+++|.++++ .+.+|+|||+...
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~-~G~~v~liEk~~~ 40 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAAD-SGLEPLIVEKQDK 40 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 47999999999999999999999 5999999998653
No 154
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.04 E-value=0.00072 Score=69.20 Aligned_cols=35 Identities=23% Similarity=0.522 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.++||||||+|.||+.+|.++++ .+.+|+|||...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae-~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE-LGYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH-cCCcEEEEecCC
Confidence 46899999999999999999998 599999999754
No 155
>PRK07538 hypothetical protein; Provisional
Probab=97.04 E-value=0.00062 Score=65.49 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
|++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCcc
Confidence 89999999999999999999 59999999998643
No 156
>PLN02676 polyamine oxidase
Probab=97.04 E-value=0.0014 Score=64.85 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=33.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~ 90 (284)
...+|+||||+|.+|+++|.+|++. +. +|+|||+....
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~ 62 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRI 62 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCC
Confidence 3468999999999999999999994 76 69999998754
No 157
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.04 E-value=0.00058 Score=70.11 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++||||||+|.||+.+|.++++ .+.+|+|||+.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae-~G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQ-RGLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHH-cCCCEEEEeCCCCC
Confidence 36899999999999999999999 59999999987643
No 158
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.04 E-value=0.00059 Score=68.59 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
||||||+|.+|+.+|..+++ .+.+|+|||++..
T Consensus 1 DVlVVG~G~AGl~AA~~aae-~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK-AGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence 89999999999999999999 5999999999764
No 159
>PRK10262 thioredoxin reductase; Provisional
Probab=97.04 E-value=0.00068 Score=62.94 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=31.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
...+|++|||+|++|+.+|..|++ .+.+|+++|..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence 457999999999999999999999 48899999854
No 160
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.03 E-value=0.00064 Score=68.91 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.+||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lieK~~~ 37 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE-AGVHVDLFSLVPV 37 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence 4699999999999999999998 5999999998764
No 161
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.03 E-value=0.00059 Score=68.37 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=31.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++ + .+.+|+|||++..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~-~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-E-RGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-h-cCCCEEEEEccCC
Confidence 358999999999999999999 7 5999999999864
No 162
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.02 E-value=0.00059 Score=68.88 Aligned_cols=36 Identities=28% Similarity=0.460 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCC---CeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPK---WKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~---~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++. + .+|+|||++..
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccC
Confidence 358999999999999999999984 5 89999998864
No 163
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.02 E-value=0.00076 Score=67.90 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=32.9
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...++||||||+|.||+.+|.++++ +.+|+|||+++..
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~~--G~~V~lieK~~~~ 43 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLPS--HLRVGLITKDTLK 43 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhhc--CCCEEEEEccCCC
Confidence 3567999999999999999999863 8899999998653
No 164
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.01 E-value=0.0007 Score=66.00 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=31.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+||+||||+|.+|+++|..|++ .+.+|+|||+|.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~-~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAE-AGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCcEEEEECCC
Confidence 4899999999999999999999 599999999874
No 165
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.01 E-value=0.00083 Score=67.76 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.7
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...++|+||||+| +|+++|...++ .+.+|+|||+.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~-~G~~v~v~Ek~~~ 49 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHE-LGLSVLIVEKSSY 49 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHH-CCCcEEEEecCCC
Confidence 3568999999999 89999999998 5999999998754
No 166
>PLN02546 glutathione reductase
Probab=97.01 E-value=0.00066 Score=68.43 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
.+||+||||+|++|..+|.++++ .+.+|+|+|.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN-FGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 36999999999999999999999 5999999995
No 167
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.00 E-value=0.00072 Score=65.88 Aligned_cols=38 Identities=47% Similarity=0.735 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
.+|||+|||+|..|+++|..|++- |.++|+|||+-...
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~ 40 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence 469999999999999999999995 44999999987654
No 168
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00081 Score=65.32 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=34.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....|+||||+|.+|+++|..|.+ .+.+|+|||+.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCc
Confidence 567999999999999999999999 59999999998764
No 169
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.97 E-value=0.00085 Score=61.47 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.+++|||+|++|+++|..|.+ .+.+|+|+|+|.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~-aG~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE-AGREVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh-cCcEEEEEEcCCCc
Confidence 468999999999999999999 69999999999754
No 170
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.95 E-value=0.0011 Score=65.41 Aligned_cols=38 Identities=24% Similarity=0.431 Sum_probs=33.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....+++|||+|++|+++|..|.+ .+.+|+|+|++...
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~v 45 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR-EGHTVVVFEREKQV 45 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence 446899999999999999999999 59999999997644
No 171
>PRK05868 hypothetical protein; Validated
Probab=96.95 E-value=0.00092 Score=63.68 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
-|++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Confidence 389999999999999999999 59999999998754
No 172
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.95 E-value=0.00089 Score=67.38 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|++|||+|.+|+++|.++++ .+.+|+|||+.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~-~G~~v~llEk~~~ 41 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAH-RGLSTVVVEKAPH 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence 46999999999999999999999 5999999999754
No 173
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.94 E-value=0.001 Score=62.67 Aligned_cols=39 Identities=28% Similarity=0.528 Sum_probs=34.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN 91 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~ 91 (284)
..++|+||||+|.+|+++|.+|++ .+++|++||.-+..+
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~-aG~~V~ildQEgeqn 41 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQN 41 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHh-cCceEEEEccccccc
Confidence 346999999999999999999999 699999999876543
No 174
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.94 E-value=0.0008 Score=68.07 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=31.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++||||||+|.+|+.+|.++++ . .+|+|||++..
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~-~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP-R-ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh-C-CCEEEEeCCCC
Confidence 46899999999999999999997 4 89999999854
No 175
>PRK12839 hypothetical protein; Provisional
Probab=96.92 E-value=0.0011 Score=67.12 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=33.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
..++|+||||+|.+|+++|..+++ .+.+|+|||++..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~-~g~~v~~iek~~~ 42 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAY-GGAKVLVVEKAST 42 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 457999999999999999999999 5899999998754
No 176
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.92 E-value=0.00097 Score=65.56 Aligned_cols=36 Identities=47% Similarity=0.708 Sum_probs=32.7
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..+||+||||+|++|.++|.++++. +.+|+++|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence 3579999999999999999999994 77799999995
No 177
>PLN02815 L-aspartate oxidase
Probab=96.91 E-value=0.001 Score=67.56 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=32.7
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..++||||||+|.||+.+|.++++ .+ +|+|||++...
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae-~G-~VvlleK~~~~ 63 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAE-YG-TVAIITKDEPH 63 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhh-CC-CEEEEECCCCC
Confidence 456899999999999999999998 47 89999998753
No 178
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.90 E-value=0.00096 Score=65.95 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
++||||||+|.||+.+|..+++ .+. |+|||++..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~-~G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD-QGR-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh-CCC-EEEEEccCC
Confidence 5899999999999999999998 476 999999864
No 179
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.90 E-value=0.00098 Score=65.03 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcC-----CCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-----PKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-----~~~~vl~lE~G~~~ 90 (284)
++||||+|.+|+++|++|++. .+.+|+|||+....
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~ 42 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL 42 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence 689999999999999999973 14799999998654
No 180
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.89 E-value=0.00095 Score=68.54 Aligned_cols=33 Identities=42% Similarity=0.622 Sum_probs=31.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
+||+||||+|++|..+|.++++ .+.+|+|||.+
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 7999999999999999999999 59999999964
No 181
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.89 E-value=0.00089 Score=67.05 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=32.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..++||||||+|.||+.+|.++++ . .+|+|||++...
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-~-~~VilveK~~~~ 42 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-H-RRVAVLSKGPLS 42 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-C-CCEEEEeccCCC
Confidence 346899999999999999999998 3 799999998753
No 182
>PRK14727 putative mercuric reductase; Provisional
Probab=96.86 E-value=0.0012 Score=65.12 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
...||+||||+|++|..+|.+|++ .+.+|+|+|++.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 346999999999999999999999 599999999873
No 183
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.85 E-value=0.001 Score=67.33 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
.++||||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 358999999999999999999974 3579999999854
No 184
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.84 E-value=0.0012 Score=64.27 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=31.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
-||+|||+|.+|+.+|..|++ .+.+|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence 489999999999999999999 59999999987654
No 185
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0013 Score=64.35 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCe-EEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~~~ 90 (284)
..+.+|++|||+|.+|+.+|.+|.+ .+.. ++|+|+....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDDV 44 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCCc
Confidence 4567999999999999999999999 4777 9999999743
No 186
>PLN02568 polyamine oxidase
Probab=96.82 E-value=0.0014 Score=65.73 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCC----CCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENP----KWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~----~~~vl~lE~G~~~ 90 (284)
...|+||||+|.+|+++|.+|++.. +.+|+|+|+....
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 4579999999999999999999741 3899999997754
No 187
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.81 E-value=0.0012 Score=65.26 Aligned_cols=32 Identities=41% Similarity=0.762 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
+||+||||+|++|..+|.++++ .+.+|+|||+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~ 33 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDF 33 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 4899999999999999999999 5999999996
No 188
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.80 E-value=0.0012 Score=65.76 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++||||||+|.||+.+|.++++ +.+|+|||++...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~ 37 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKR 37 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCC
Confidence 6899999999999999999875 7899999998753
No 189
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.79 E-value=0.0013 Score=67.02 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHh----cCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLS----ENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~----~~~~~~vl~lE~G~~ 89 (284)
||||||+|.||+.+|.+++ + .+.+|+|||++..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e-~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK-KGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh-CCCeEEEEEccCC
Confidence 8999999999999999998 5 5899999999864
No 190
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.76 E-value=0.0012 Score=66.72 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
++||||||+|.||+.+|..+++. ++.+|+|||++..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 58999999999999999999974 3589999999764
No 191
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.76 E-value=0.0014 Score=69.66 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|+||||+|.+|+.+|..+++ .+.+|+|||++..
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~-~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAE-HGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 46899999999999999999998 5999999999874
No 192
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.73 E-value=0.0016 Score=63.29 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+++|||+|.+|+++|.+|++ .+.+|+|+|+.+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~~~ 34 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD-AGHTPIVLEARDVL 34 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 48999999999999999999 59999999998643
No 193
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.71 E-value=0.0017 Score=64.66 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.1
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
...||++|||+|++|+.+|..|++ .+.+|+|+|.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 446999999999999999999999 5999999986
No 194
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.71 E-value=0.0018 Score=62.05 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-+++|||+|++|+++|..|++ .+.+|.|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 468999999999999999999 6999999998764
No 195
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.70 E-value=0.0016 Score=64.77 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=30.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
...||++|||+|++|+.+|..|++ .+.+|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 346999999999999999999999 6999999975
No 196
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.66 E-value=0.0017 Score=70.76 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=33.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+||||||+|.||+++|.+.++ .+.+|+|||+++..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae-~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAAS-CGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEccCCC
Confidence 45899999999999999999999 59999999998654
No 197
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.66 E-value=0.0019 Score=64.36 Aligned_cols=38 Identities=34% Similarity=0.658 Sum_probs=35.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..++|+||||||..|+-+|..++. .+++|+|+|++..-
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~-RGl~v~LvE~~D~A 47 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG-RGLKVALVEKGDLA 47 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh-CCCeEEEEecCccc
Confidence 378999999999999999999999 69999999999754
No 198
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.64 E-value=0.0021 Score=64.97 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=33.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
..++|+||||+|.+|+.+|..+++ .+.+|+|||+...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~-~g~~v~~iek~~~ 46 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAW-HGLKVIVVEKDPV 46 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 457999999999999999999999 5999999998653
No 199
>KOG3855|consensus
Probab=96.64 E-value=0.0025 Score=61.40 Aligned_cols=49 Identities=37% Similarity=0.532 Sum_probs=37.5
Q ss_pred ccccccCCCC-CCCcccEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCc
Q psy4112 41 RENIFLGNKP-ILSEYDFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGED 89 (284)
Q Consensus 41 ~~~~~~~~~~-~~~~~d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~ 89 (284)
.+..+|.... ....||++|||+|+.|..+|..|..+ ..+||+++|+|..
T Consensus 22 ~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 22 DTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccccccccccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3444453333 34489999999999999999999976 3579999999943
No 200
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.64 E-value=0.0028 Score=64.12 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=32.9
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
..++|+||||+|.+|+.+|..+++ .+.+|+|||+...
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~-~g~~v~l~ek~~~ 50 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAI-AGLKVLLVERTEY 50 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 447899999999999999999998 5999999998653
No 201
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.58 E-value=0.0023 Score=62.26 Aligned_cols=34 Identities=38% Similarity=0.712 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
||++|||+|.+|+++|..|++ .+.+|+|+|+|..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~-~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE-AGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH-CCCCEEEEeCCCc
Confidence 699999999999999999998 5999999999963
No 202
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.54 E-value=0.0025 Score=68.36 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=33.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+|++|||+|+||+.+|..+++ .+.+|+|+|.++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar-~G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR-AGARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence 46899999999999999999999 69999999987543
No 203
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.52 E-value=0.0027 Score=65.15 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=33.1
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
....+++|||+|++|+++|..|++ .+.+|.|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence 566999999999999999999999 599999999875
No 204
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.51 E-value=0.0029 Score=60.77 Aligned_cols=35 Identities=31% Similarity=0.519 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|++|+++|..|++..+.+|+|+|+.+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 58999999999999999998423699999998654
No 205
>PRK12831 putative oxidoreductase; Provisional
Probab=96.50 E-value=0.0034 Score=61.83 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.....|++|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~ 174 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHE 174 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 3456899999999999999999999 5999999998543
No 206
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.49 E-value=0.0027 Score=64.04 Aligned_cols=38 Identities=37% Similarity=0.548 Sum_probs=34.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..++|+||||+|.||+.+|.++++ .+.+|+|||+....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~-~g~~V~l~~K~~~~ 41 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAE-AGLKVALLSKAPPK 41 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHh-cCCcEEEEEccccC
Confidence 457999999999999999999999 58999999988654
No 207
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.48 E-value=0.0029 Score=61.90 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
++||||+|++|..+|.++++ .+.+|+|||++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-NGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCc
Confidence 68999999999999999999 699999999864
No 208
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.47 E-value=0.0027 Score=61.22 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=25.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEe
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLL 84 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~l 84 (284)
||||||+|.|||.+|..+++ .+.+|+|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr-~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR-MGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEE
Confidence 89999999999999999999 59999999
No 209
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.45 E-value=0.0026 Score=63.36 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=30.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
..++||||||+|.||+.+|.++++ .+|+|||++..
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa~---~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLAP---RPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhCc---CCEEEEECCCC
Confidence 456999999999999999999874 49999999875
No 210
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.45 E-value=0.0036 Score=66.97 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=32.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...+++|||+|+||+++|..|++ .+.+|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence 45899999999999999999999 5999999998753
No 211
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.45 E-value=0.0032 Score=61.50 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
|++|||+|.+||.+|..|++ .+.+|+|+|..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence 79999999999999999999 5999999997665
No 212
>PLN02612 phytoene desaturase
Probab=96.44 E-value=0.0046 Score=62.42 Aligned_cols=38 Identities=29% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.....+++|||+|.+|+++|.+|++ .+.+|+|+|+...
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~ 127 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDV 127 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCC
Confidence 3456899999999999999999999 5999999999654
No 213
>PRK07846 mycothione reductase; Reviewed
Probab=96.41 E-value=0.0035 Score=61.44 Aligned_cols=32 Identities=34% Similarity=0.783 Sum_probs=27.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+||+||||+|++|..+|.+. .+.+|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence 38999999999999888763 389999999753
No 214
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.0032 Score=62.02 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=31.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.|+|+|+|.||+++|..|++ .+..|.|+|+|+..
T Consensus 2 rVai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~ 35 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRL 35 (485)
T ss_pred eEEEEcccHHHHHHHHHHHh-CCCceEEEeccCcc
Confidence 48999999999999999999 69999999999864
No 215
>KOG2614|consensus
Probab=96.40 E-value=0.0039 Score=60.02 Aligned_cols=36 Identities=42% Similarity=0.551 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+-++||||+|.+|++.|..|++ .+++|+|+|...+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeecccc
Confidence 4689999999999999999999 69999999996654
No 216
>KOG2665|consensus
Probab=96.37 E-value=0.0025 Score=59.64 Aligned_cols=40 Identities=38% Similarity=0.598 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~ 90 (284)
..+.||.+|||+|..|++.|.+|+- .|.++|+|||+-...
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 3568999999999999999999984 489999999988653
No 217
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.36 E-value=0.0047 Score=60.83 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....+++|||+|++|+.+|..|++ .+.+|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~-~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR-AGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence 455799999999999999999999 59999999987643
No 218
>KOG2820|consensus
Probab=96.35 E-value=0.0031 Score=59.37 Aligned_cols=38 Identities=34% Similarity=0.390 Sum_probs=34.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....|+||||+|..|+++|..|+++ +.++|+||+=+..
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~p 42 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPLP 42 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence 4568999999999999999999995 8999999987654
No 219
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.34 E-value=0.0024 Score=61.54 Aligned_cols=32 Identities=38% Similarity=0.560 Sum_probs=29.1
Q ss_pred EEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 58 VIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 58 iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
||||+|++|+++|..+++ .+.+|+|||+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~-~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR-EGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHh-cCCcEEEEecCccc
Confidence 699999999999999999 59999999998653
No 220
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.32 E-value=0.0042 Score=60.85 Aligned_cols=32 Identities=34% Similarity=0.727 Sum_probs=27.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+||+||||+|++|..+|.+. .+.+|+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~---~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF---ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence 59999999999999887654 389999999753
No 221
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.30 E-value=0.0041 Score=63.13 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
||+||||+|.+|+.+|..+++ .+.+|+|||.+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCCEEEEecccc
Confidence 799999999999999999998 5999999998743
No 222
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.25 E-value=0.0059 Score=59.77 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=33.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
....+++|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~ 167 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK-AGHSVTVFEALHK 167 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 456899999999999999999999 5999999998653
No 223
>KOG1399|consensus
Probab=96.24 E-value=0.0042 Score=60.97 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.-+++|||+|++|+++|..|.+ .+..|.|+|+....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHH-CCCCceEEEecCCc
Confidence 4689999999999999999999 59999999999865
No 224
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.24 E-value=0.0083 Score=44.28 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=31.2
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN 91 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~ 91 (284)
++|||+|..|+-+|..|++ .+.+|.|||+++...
T Consensus 2 vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAE-LGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHH-hCcEEEEEeccchhh
Confidence 6899999999999999999 599999999998654
No 225
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.23 E-value=0.0047 Score=60.56 Aligned_cols=35 Identities=37% Similarity=0.643 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
.++|||+|.+|+++|.+|.+. |...|.|+|++...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 379999999999999999995 44999999998654
No 226
>PLN02529 lysine-specific histone demethylase 1
Probab=96.18 E-value=0.0062 Score=63.30 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.....|++|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~ 194 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLS-FGFKVVVLEGRNR 194 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHH-cCCcEEEEecCcc
Confidence 3457899999999999999999999 5999999999754
No 227
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.15 E-value=0.0077 Score=60.75 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~~ 90 (284)
.+.-+++|||||.+|+++|..|.++ ++.+|.|+|+....
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~ 61 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP 61 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence 3457899999999999999999986 47899999998754
No 228
>KOG0685|consensus
Probab=96.15 E-value=0.0057 Score=59.82 Aligned_cols=39 Identities=38% Similarity=0.526 Sum_probs=34.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.....++|||+|.||+.+|.||.+.....|+|+|+....
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 344689999999999999999998777899999998765
No 229
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.14 E-value=0.0082 Score=56.62 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=34.2
Q ss_pred CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+.....+++|||+|++|+.+|..|++ .+.+|+|+|+.+..
T Consensus 14 ~~~~~~~VvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~ 53 (352)
T PRK12770 14 PPPTGKKVAIIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEP 53 (352)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence 33445699999999999999999998 59999999988654
No 230
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.14 E-value=0.0046 Score=62.92 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=29.0
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
|||||+|.||+.+|.++++ .+.+|+|||++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae-~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE-LGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHH-cCCCEEEEEecC
Confidence 6899999999999999998 589999999987
No 231
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.13 E-value=0.006 Score=60.22 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+++|||+|.+|+++|.+|++ .+.+|+|+|+....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~-~G~~v~v~E~~~~~ 34 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD-AGHEVDIYESRSFI 34 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCCC
Confidence 47999999999999999999 59999999997644
No 232
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.08 E-value=0.0074 Score=63.23 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=33.7
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....+++|||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r~ 273 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLS-MGFKVVVLEGRARP 273 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeccccC
Confidence 456899999999999999999998 69999999997543
No 233
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.07 E-value=0.0071 Score=59.23 Aligned_cols=39 Identities=33% Similarity=0.491 Sum_probs=30.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN 91 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~ 91 (284)
.++||+||+|.|..-|++|..|+. .+++||.||+.....
T Consensus 2 ~~~yDviI~GTGl~esila~als~-~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSR-SGKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHh-cCCEEEecCCCCCcC
Confidence 578999999999999999999999 599999999998763
No 234
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.06 E-value=0.0053 Score=60.36 Aligned_cols=34 Identities=38% Similarity=0.560 Sum_probs=27.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCC---CeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPK---WKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~---~~vl~lE~G~~~ 90 (284)
||+|||+|++|..+|..|++. . .+|+|||.....
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~-~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARA-GPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHH-CTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCC
Confidence 799999999999999999984 4 899999998755
No 235
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.06 E-value=0.0085 Score=58.65 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=33.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....+++|||+|++|+.+|..|++ .+.+|+|+|+....
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-KGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence 445799999999999999999999 59999999987643
No 236
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.00 E-value=0.0068 Score=64.76 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...+|+|||||+||+++|..|++ .+.+|+|+|+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV-EGFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Confidence 45789999999999999999999 5999999998653
No 237
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.99 E-value=0.011 Score=58.68 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~ 90 (284)
......|+|||+|+||+.+|..|++ ..+.+|.|+|+-+..
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 3445789999999999999999985 358999999998865
No 238
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=95.93 E-value=0.0084 Score=56.47 Aligned_cols=35 Identities=26% Similarity=0.568 Sum_probs=32.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+||++|||+|.+|+.+|.+|.+ .++++.+|-.|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ-AGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh-cCCcEEEEeCChh
Confidence 5999999999999999999999 5999999999975
No 239
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.93 E-value=0.0082 Score=61.56 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...+++|||+|++|+++|..|++ .+.+|+|+|+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-NGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 45799999999999999999999 5999999998754
No 240
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.91 E-value=0.0084 Score=64.50 Aligned_cols=37 Identities=22% Similarity=0.123 Sum_probs=33.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...+++|||+|++|+++|..|++ .+.+|+|+|++...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK-YGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence 45799999999999999999999 59999999987643
No 241
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.84 E-value=0.01 Score=61.84 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=32.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
....+++|||+|+||+++|..|++ .+.+|+|+|+.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~ 464 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK-RGYDVTVFEALH 464 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 346799999999999999999999 599999999854
No 242
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.80 E-value=0.0089 Score=62.50 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
+++|||+|++|+++|..|++. ++.+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999983 3899999998764
No 243
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=95.79 E-value=0.011 Score=58.21 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
|+||||+|++|..+|..+++ .+.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQ-LGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 79999999999999999999 599999999764
No 244
>KOG2960|consensus
Probab=95.73 E-value=0.0031 Score=56.10 Aligned_cols=38 Identities=34% Similarity=0.542 Sum_probs=32.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~ 89 (284)
..+.|+||||+|.+|+++|+.++. +|+++|.+||+--.
T Consensus 74 yAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 74 YAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA 112 (328)
T ss_pred hhccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence 346799999999999999999994 48999999998543
No 245
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.73 E-value=0.011 Score=63.30 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=32.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...-+++|||+|+||+++|..|++ .+.+|+|+|+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-AGHPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 345799999999999999999999 5999999998754
No 246
>KOG2853|consensus
Probab=95.63 E-value=0.013 Score=55.50 Aligned_cols=44 Identities=34% Similarity=0.436 Sum_probs=36.9
Q ss_pred CCCCCCCcccEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCcc
Q psy4112 47 GNKPILSEYDFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGEDE 90 (284)
Q Consensus 47 ~~~~~~~~~d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~~ 90 (284)
++...+.++|++|||+|-.|+++|..|.|. .+.+|+|+|+....
T Consensus 79 ~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 79 DNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 445567899999999999999999999873 56899999987643
No 247
>PLN02487 zeta-carotene desaturase
Probab=95.57 E-value=0.015 Score=58.88 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...+++|||+|.+|+++|.+|.+ .+.+|+|+|+.+..
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~ 110 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRPFI 110 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh-CCCeeEEEecCCCC
Confidence 34699999999999999999998 59999999997654
No 248
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.51 E-value=0.019 Score=59.05 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=32.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
....+++|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLR-KGHDVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 345799999999999999999999 5999999998764
No 249
>PLN03000 amine oxidase
Probab=95.37 E-value=0.02 Score=60.34 Aligned_cols=37 Identities=32% Similarity=0.484 Sum_probs=33.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...+++|||+|.+|+.+|..|.+ .+.+|+|+|+....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~-~G~~V~VlE~~~ri 219 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR-FGFKVTVLEGRKRP 219 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence 46899999999999999999998 59999999998765
No 250
>KOG4716|consensus
Probab=95.30 E-value=0.016 Score=54.90 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=32.0
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.-.||.||||+|.+|+++|.+.+. -+.+|++|+.=.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFVK 52 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeecc
Confidence 456999999999999999999998 599999999653
No 251
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.29 E-value=0.019 Score=57.59 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.|+|||+|++|+++|..|.| .+..|+++|+..+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDI 36 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TT-EEEEEESSSSS
T ss_pred EEEEECccHHHHHHHHHHHH-CCCCCeEEecCCCC
Confidence 48999999999999999999 59999999998765
No 252
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.27 E-value=0.026 Score=56.12 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=32.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...-|+|||+|++|+.+|.+|+...+.+|.|+|+-+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 34679999999999999998764468999999999866
No 253
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.27 E-value=0.022 Score=60.68 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.....|+|||+|+||+.+|..|++ .+.+|.|+|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~-~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR-SGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh-CCCeEEEEccc
Confidence 355789999999999999999998 59999999974
No 254
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.24 E-value=0.013 Score=56.79 Aligned_cols=30 Identities=37% Similarity=0.537 Sum_probs=27.7
Q ss_pred EECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 59 IIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 59 ivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
|||+|.+|+++|.++++ .+.+|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~-~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR-AGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence 79999999999999999 5999999999764
No 255
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.17 E-value=0.027 Score=55.78 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...+++|||+|++|+.+|..|++ .+.+|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-AGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 34799999999999999999999 5999999998764
No 256
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.15 E-value=0.026 Score=55.61 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=32.4
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...+++|||+|++|+.+|..|++ .+.+|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-AGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence 45799999999999999999998 5999999998764
No 257
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=95.07 E-value=0.027 Score=55.33 Aligned_cols=38 Identities=34% Similarity=0.738 Sum_probs=34.2
Q ss_pred CcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~ 90 (284)
+++|||+||+|..|++++.-|.+ +|.++|.|+|+-...
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~ 40 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV 40 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence 56999999999999999999997 489999999988754
No 258
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.06 E-value=0.021 Score=56.27 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
||+|||+|.||+++|..|++ ..+|+||-+++..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~--~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP--SFRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC--CCcEEEEeCCCCC
Confidence 99999999999999999997 4999999998754
No 259
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.96 E-value=0.027 Score=57.75 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...+++|||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR-AGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence 46889999999999999999999 5999999998875
No 260
>PLN02976 amine oxidase
Probab=94.86 E-value=0.032 Score=61.56 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=32.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
...|++|||+|++|+.+|..|.+ .+.+|+|||+...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~ 727 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR-QGFSVTVLEARSR 727 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH-CCCcEEEEeeccC
Confidence 35899999999999999999999 5999999998543
No 261
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.85 E-value=0.026 Score=56.32 Aligned_cols=37 Identities=38% Similarity=0.504 Sum_probs=32.0
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..|||||||+|-||+-+|...++ -+.+++||-...+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~~dt 39 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLNLDT 39 (621)
T ss_pred CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcCCCc
Confidence 45999999999999999999998 59999998766543
No 262
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=94.79 E-value=0.035 Score=54.78 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.=+++|||+|.+|+.+|..|++ .+.+|.|+|.-+..
T Consensus 124 ~~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsi 159 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSI 159 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence 3568999999999999999999 59999999998764
No 263
>PRK09897 hypothetical protein; Provisional
Probab=94.79 E-value=0.035 Score=55.84 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
.+++|||+|++|+++|.+|.+. ...+|+|+|.+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 4799999999999999999874 3569999998654
No 264
>KOG0042|consensus
Probab=94.71 E-value=0.014 Score=58.10 Aligned_cols=38 Identities=34% Similarity=0.514 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+||++|||||++|.-+|..-+- .+++|.++|+|...
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~T-RGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAAT-RGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhc-ccceeEEEeccccc
Confidence 346999999999999999988776 59999999999864
No 265
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=94.65 E-value=0.028 Score=53.44 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..-++.|||+|.+|+++|.-|+. ..+|.|.||+..-
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rl 42 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRL 42 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc--ccceEEEeccccc
Confidence 45789999999999999999997 7899999999765
No 266
>KOG0405|consensus
Probab=94.61 E-value=0.033 Score=52.97 Aligned_cols=36 Identities=36% Similarity=0.594 Sum_probs=32.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..+||++|||+|.+|...|.|.++ -+.+|.|+|+..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAAS-HGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHh-cCceEEEEecCC
Confidence 458999999999999999999998 499999999983
No 267
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.53 E-value=0.041 Score=53.33 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
.++|||+|++|+.+|..|.+. +..+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 589999999999999999874 35699999998753
No 268
>PRK13984 putative oxidoreductase; Provisional
Probab=94.48 E-value=0.055 Score=54.92 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=33.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....+++|||+|++|+.+|..|.+ .+.+|+|+|+....
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT-MGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 456789999999999999999999 59999999987643
No 269
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.36 E-value=0.053 Score=51.97 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=30.3
Q ss_pred ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
-+++|||+|+||+.+|..|.+. ...+|+|+++....
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 5799999999999999999984 34589999987654
No 270
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.32 E-value=0.049 Score=53.04 Aligned_cols=35 Identities=17% Similarity=0.470 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
.++|||+|++|..+|.+|.+. ++.+|+|||+....
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 689999999999999999863 57899999998754
No 271
>KOG1335|consensus
Probab=94.27 E-value=0.047 Score=52.49 Aligned_cols=35 Identities=37% Similarity=0.605 Sum_probs=32.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+||++|||+|++|-++|.+-++ .+.+...+|...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ-lGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ-LGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH-hcceeEEEeccC
Confidence 57999999999999999999999 699999999844
No 272
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.16 E-value=0.069 Score=53.78 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
...-+++|||+|++|+.+|..|++ .+.+|+|+|+.+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~ 170 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGP 170 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 445689999999999999999998 589999999754
No 273
>KOG1276|consensus
Probab=94.14 E-value=0.062 Score=52.24 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=32.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
..-+++|||+|.+|+.+|..|++. ++..|.|.|+++.-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 346899999999999999999985 56678889998865
No 274
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.14 E-value=0.035 Score=52.61 Aligned_cols=37 Identities=32% Similarity=0.302 Sum_probs=27.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.||+|+||.||+++++|..|.+....+++.||+-+..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 5899999999999999999999766999999987754
No 275
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.06 E-value=0.067 Score=51.88 Aligned_cols=38 Identities=18% Similarity=0.422 Sum_probs=32.7
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
....++||||+|.+|+.+|.+|.. ...+|+|||.....
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCCc
Confidence 456799999999999999999976 47899999987654
No 276
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.89 E-value=0.064 Score=44.76 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=26.8
Q ss_pred EEECCChHHHHHHHHHhcC----CCCeEEEeccCC
Q psy4112 58 VIIGGGVGGSVVANRLSEN----PKWKVLLLESGE 88 (284)
Q Consensus 58 iivg~G~~g~~~a~~l~~~----~~~~vl~lE~G~ 88 (284)
+|||+|++|+.++.+|.+. ...+|.|+|..+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 5999999999999999986 367899999843
No 277
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.64 E-value=0.094 Score=49.36 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHhc--CCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~--~~~~~vl~lE~G~~~ 90 (284)
.++|||+|.+|..+|.+|.+ .+..+|+|||+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 48999999999999999964 257899999987754
No 278
>KOG1800|consensus
Probab=93.64 E-value=0.089 Score=50.55 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
...++|||||+||..+|.+|.+. ++.+|-|+|.-+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 35899999999999999999984 78999999998865
No 279
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.25 E-value=0.11 Score=49.37 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~ 89 (284)
.+++|||+|+||..+|.+|.+ ++..+|+||+..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 489999999999999999986 35678999987654
No 280
>KOG4254|consensus
Probab=93.11 E-value=0.077 Score=51.97 Aligned_cols=38 Identities=37% Similarity=0.436 Sum_probs=34.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+||.+|||+|.-|+.+|..|++ -+.+|.|+|+....
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r-~g~~V~vlerrhv~ 49 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR-YGQSVAVLERRHVI 49 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh-cCcceEEEEEeeec
Confidence 568999999999999999999999 59999999998443
No 281
>KOG3851|consensus
Probab=93.09 E-value=0.086 Score=49.69 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=34.1
Q ss_pred CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
.+++.++|||+|.+|+.+|+++.+. +.-+|.+||--.+.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 5789999999999999999999975 56689999977654
No 282
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.85 E-value=0.1 Score=51.46 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..-.|.||||||+|+.+|..|+. .++.|++.|+-+..
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~ 158 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSR-AGHDVTVFERVALD 158 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHh-CCCeEEEeCCcCCC
Confidence 34789999999999999999999 59999999987755
No 283
>KOG4405|consensus
Probab=92.70 E-value=0.12 Score=50.13 Aligned_cols=39 Identities=36% Similarity=0.470 Sum_probs=35.6
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++.+||+||||.|..=+++|+.-++ .+.+||-|+..++.
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~yY 43 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEYY 43 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCcccc
Confidence 5778999999999999999999998 69999999998765
No 284
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=92.53 E-value=0.13 Score=50.48 Aligned_cols=41 Identities=32% Similarity=0.530 Sum_probs=35.8
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcC----CCCeEEEeccCCccc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSEN----PKWKVLLLESGEDEN 91 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~----~~~~vl~lE~G~~~~ 91 (284)
....+|+||||+|++|+-+|.+++.+ +..+|+++|.|.+..
T Consensus 15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~ 59 (486)
T COG2509 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIE 59 (486)
T ss_pred hhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchh
Confidence 45679999999999999999999975 478999999997654
No 285
>KOG2311|consensus
Probab=92.20 E-value=0.13 Score=50.76 Aligned_cols=35 Identities=37% Similarity=0.534 Sum_probs=28.4
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
...|||||||+|-|||-+|..-++- +-+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence 5679999999999999999988884 6666666543
No 286
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.14 Score=48.51 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
-+.|||+|.||+-+|+.+++ .++.|.+.|..+..
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~k 38 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAK-RGVPVILYEMRPVK 38 (439)
T ss_pred ceEEEcccccccHHHHHHHH-cCCcEEEEEccccc
Confidence 47899999999999999999 69999999999865
No 287
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.38 E-value=0.24 Score=44.12 Aligned_cols=34 Identities=38% Similarity=0.612 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|..+|..|++ .+..|++||.-+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~~ 35 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEER 35 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHHH
Confidence 58999999999999999999 48999999987654
No 288
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.22 E-value=0.28 Score=40.11 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
++|+|+|..|+..|++|++ .+.+|.++-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence 5799999999999999999 699999999887
No 289
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=90.75 E-value=0.31 Score=45.74 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN 91 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~ 91 (284)
.-+++|||+|..|+.+|..|.+ .+.+|.++|......
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~~~ 172 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK-RGKKVTLIEAADRLG 172 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH-cCCeEEEEEcccccc
Confidence 3689999999999999999999 599999999998763
No 290
>KOG2755|consensus
Probab=90.43 E-value=0.2 Score=45.98 Aligned_cols=35 Identities=29% Similarity=0.646 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
.+||||+|.||.++|..|+.. |...||+|-+-+..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 379999999999999999974 77899999988753
No 291
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.25 E-value=0.36 Score=47.56 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=30.4
Q ss_pred cccEEEECCChHHHHHHHHHhcC--CCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~~ 90 (284)
.++|+|||+|++|..+|..|.+. +..+|.|+|.-+..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 37899999999999999999985 23349999987654
No 292
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=0.42 Score=45.85 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=33.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..||+||+|.|..=|+++.+|+. .+.+||+|+.....
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~-~~k~VlhiD~Nd~Y 41 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSW-DGKNVLHIDKNDYY 41 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhh-cCceEEEEeCCCcc
Confidence 36999999999999999999998 59999999998754
No 293
>KOG2844|consensus
Probab=89.63 E-value=0.37 Score=49.40 Aligned_cols=35 Identities=40% Similarity=0.546 Sum_probs=29.0
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCe-EEEecc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLES 86 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~ 86 (284)
.+...|++|||+|..||.+|..|++ .+.+ ++++|.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~ 71 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLER 71 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEee
Confidence 5667999999999999999999999 5888 444443
No 294
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=0.21 Score=47.69 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=26.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeE-EEecc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKV-LLLES 86 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~v-l~lE~ 86 (284)
...||++|||+|++|.++|..-++ ++.+. ++-|+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaAR-KGiRTGl~aer 243 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAAR-KGIRTGLVAER 243 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHh-hcchhhhhhhh
Confidence 456999999999999999999888 46543 33343
No 295
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.46 E-value=0.47 Score=45.45 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|.+ .+.+|.|+|.++..
T Consensus 146 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQ-RRCKVTVIELAATV 179 (396)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence 58999999999999999998 58999999998753
No 296
>KOG2404|consensus
Probab=89.42 E-value=0.37 Score=45.61 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
-+||||+|.||++++.++.. .+..|++||.-...
T Consensus 11 pvvVIGgGLAGLsasn~iin-~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN-KGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHh-cCCeEEEEeccCCc
Confidence 58999999999999999998 57779999986654
No 297
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=89.15 E-value=0.53 Score=44.69 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus 143 ~vvViGgG~~g~e~A~~L~~-~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 143 RVLVVGGGLIGTELAMDLCR-AGKAVTLVDNAASL 176 (377)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCcc
Confidence 58999999999999999998 58999999998753
No 298
>KOG1439|consensus
Probab=88.93 E-value=0.25 Score=47.70 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=34.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++||+||+|.|..=|+++..|+. .+.+||.|++.+..
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yY 39 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSV-DGKKVLHIDRNDYY 39 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeee-cCcEEEEEeCCCCC
Confidence 356999999999999999999999 59999999998765
No 299
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=88.93 E-value=0.27 Score=47.80 Aligned_cols=38 Identities=34% Similarity=0.595 Sum_probs=31.5
Q ss_pred CcccEEEECCChHHHHHHHHHhcC------------CCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN------------PKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~------------~~~~vl~lE~G~~~ 90 (284)
...+++|||+|++|.-+|.+|++. ...+|.|+|+|+..
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 346899999999999999999873 12499999999875
No 300
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=88.34 E-value=0.59 Score=45.86 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|.+|+-+|..|++ .+.+|.+||+++..
T Consensus 182 ~vvIIGgG~~G~E~A~~l~~-~g~~Vtli~~~~~i 215 (472)
T PRK05976 182 SLVIVGGGVIGLEWASMLAD-FGVEVTVVEAADRI 215 (472)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCeEEEEEecCcc
Confidence 58999999999999999998 58999999998753
No 301
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=88.18 E-value=0.63 Score=45.12 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+.+|..|++ .+.+|.++|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence 58999999999999999998 58999999998643
No 302
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.07 E-value=0.66 Score=38.73 Aligned_cols=31 Identities=32% Similarity=0.481 Sum_probs=27.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+.|+|+|..|..+|..|+++ +.+|.+..+-+
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 67999999999999999994 88999987654
No 303
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=87.53 E-value=0.77 Score=44.65 Aligned_cols=36 Identities=31% Similarity=0.550 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCC-CCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENP-KWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~-~~~vl~lE~G~~~ 90 (284)
-.++|||+|.+|+.+|.+|.+.+ +.+|++||.-...
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 45899999999999999999852 5889999988765
No 304
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=87.05 E-value=0.83 Score=44.70 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+.+|..|.+ .+.+|.++|+++..
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~l 205 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSR-LGTKVTIVEMAPQL 205 (458)
T ss_pred cEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence 59999999999999999998 58999999998653
No 305
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=86.96 E-value=0.8 Score=44.59 Aligned_cols=35 Identities=34% Similarity=0.361 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
-+++|||+|..|+.+|..|.+ .+.+|.++|+++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS-LGSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCCC
Confidence 368999999999999999998 48999999998753
No 306
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.78 E-value=4 Score=41.08 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=30.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+-.+||+|.|..|..+|.+|.+ .+..|+++|.-+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~-~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLA-AGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHH-CCCCEEEEECCHH
Confidence 4678999999999999999998 4899999997654
No 307
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.74 E-value=0.84 Score=44.93 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.|||+++..
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~i 209 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHR-LGSEVDVVEMFDQV 209 (471)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence 58999999999999999998 59999999998753
No 308
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=86.67 E-value=0.75 Score=48.41 Aligned_cols=34 Identities=12% Similarity=0.361 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHhcC--CCCeEEEeccCCcc
Q psy4112 57 FVIIGGGVGGSVVANRLSEN--PKWKVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~~ 90 (284)
++|||+|++|..+|.+|.+. .+.+|+|||..+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 58999999999999988763 35799999988765
No 309
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=86.52 E-value=0.85 Score=48.47 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~~ 90 (284)
.++|||+|++|..+|.+|.+. .+.+|+||++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 799999999999999999753 35799999988765
No 310
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=86.43 E-value=0.99 Score=38.72 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=26.9
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+.|||+|..|...|..++. .+.+|.++|..+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence 6799999999999999999 5999999998654
No 311
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.40 E-value=1.1 Score=34.72 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=27.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
|||+|.|..|..+|..|.+ .+.+|+++|.-+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence 6899999999999999999 5789999997754
No 312
>PRK07846 mycothione reductase; Reviewed
Probab=86.37 E-value=0.92 Score=44.44 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
-.++|||+|..|+.+|..|++ .+.+|.++|.++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSA-LGVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence 368999999999999999998 58999999998753
No 313
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=85.97 E-value=0.97 Score=44.22 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|++ -+.+|.+||+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHG-LGSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence 58999999999999999998 5899999999864
No 314
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=85.93 E-value=0.98 Score=44.12 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus 168 ~vvIIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 168 SLAVIGGGAIGVELAQAFAR-LGSEVTILQRSDRL 201 (463)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCcC
Confidence 58999999999999999998 58999999998643
No 315
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=85.89 E-value=1 Score=43.44 Aligned_cols=34 Identities=38% Similarity=0.471 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|.+|+.+|..|++ .+.+|.+++.+...
T Consensus 139 ~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRE-RGKNVTLIHRSERI 172 (427)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCccc
Confidence 68999999999999999998 58899999988643
No 316
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.82 E-value=1 Score=41.89 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.+.|||+|..|+..|.+|++ .+..|.++.++.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence 358999999999999999999 588999999875
No 317
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=85.63 E-value=1.2 Score=37.82 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..-.++|||+|.++.-+|..|++. +.+|.++=+.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 346799999999999999999995 78999887654
No 318
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.43 E-value=1.1 Score=43.98 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 176 ~vvIIGgG~ig~E~A~~l~~-~G~~Vtlie~~~~i 209 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRR-LGAQVTVVEYLDRI 209 (466)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCCC
Confidence 57999999999999999998 58999999988643
No 319
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=85.38 E-value=1.1 Score=43.71 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYE-RGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence 58899999999999999998 5899999998864
No 320
>KOG0399|consensus
Probab=85.32 E-value=0.99 Score=49.06 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=32.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.-..+.|||+|++|+.+|..|-+ .+..|.|.|+-...
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk-~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK-AGHTVTVYERSDRV 1820 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhh-cCcEEEEEEecCCc
Confidence 35789999999999999999999 59999999987654
No 321
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.23 E-value=1.1 Score=43.61 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 207 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYAS-LGAEVTIVEALPRI 207 (462)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCc
Confidence 58999999999999999998 58999999998754
No 322
>PRK06370 mercuric reductase; Validated
Probab=85.13 E-value=1.1 Score=43.70 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.++|.++..
T Consensus 173 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~ 206 (463)
T PRK06370 173 HLVIIGGGYIGLEFAQMFRR-FGSEVTVIERGPRL 206 (463)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCC
Confidence 57999999999999999998 58999999998753
No 323
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=85.02 E-value=1.2 Score=43.52 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.++|.++..
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 210 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAA-LGVKVTLINTRDRL 210 (461)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence 58999999999999999998 59999999998743
No 324
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.02 E-value=1.2 Score=43.72 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=30.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+.+|..|++ .+.+|.|+|.++..
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKN-YGVDVTIVEFLDRA 207 (466)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence 58999999999999999998 58999999987643
No 325
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.83 E-value=1.3 Score=41.22 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.+.|||+|..|+..|.+|++ .+..|.++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence 358999999999999999999 589999998875
No 326
>KOG2495|consensus
Probab=83.95 E-value=0.51 Score=46.06 Aligned_cols=38 Identities=32% Similarity=0.507 Sum_probs=31.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcC-------------CCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSEN-------------PKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~-------------~~~~vl~lE~G~~~ 90 (284)
.-..++||||||+|.-.|.+|+.- ...+|.+|||++..
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence 346799999999999999999861 35689999999854
No 327
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=83.76 E-value=1.4 Score=42.89 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 204 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSR-LGVKVTVFERGDRI 204 (460)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Confidence 58999999999999999998 58999999998743
No 328
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.32 E-value=1.5 Score=39.86 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=27.3
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
+.|||+|..|+.+|..|++ .+..|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQ-AGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence 7899999999999999998 58899999873
No 329
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.13 E-value=1.5 Score=40.07 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=26.8
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
+.|||+|..|+.+|..|++ .+.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~-~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLE-AGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHH-CCCceEEEec
Confidence 7899999999999999999 5889999887
No 330
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=83.08 E-value=1.6 Score=42.79 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus 171 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~ 203 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSA-LGTRVTIVNRSTK 203 (452)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCc
Confidence 68999999999999999998 5899999998865
No 331
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=82.55 E-value=1.7 Score=42.34 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.++|.++..
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRG-LGVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEEeCCCC
Confidence 48999999999999999998 58999999998753
No 332
>KOG0404|consensus
Probab=82.52 E-value=1.3 Score=40.01 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.++|||+|+++-.+|..+++ +..+-+|+|-+-
T Consensus 9 e~v~IiGSGPAa~tAAiYaar-aelkPllfEG~~ 41 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAAR-AELKPLLFEGMM 41 (322)
T ss_pred eeEEEEccCchHHHHHHHHhh-cccCceEEeeee
Confidence 368999999999999999998 699999999653
No 333
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=82.41 E-value=1.7 Score=38.94 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=30.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
-.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~-~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTR-IAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHh-hcCEEEEEEeCccc
Confidence 378999999999999999998 48899999988643
No 334
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=82.32 E-value=1.7 Score=41.97 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=30.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-.++|||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKH-LGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCcEEEEeCCcc
Confidence 368999999999999999998 5889999998764
No 335
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.23 E-value=1.7 Score=43.39 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ -+.+|.|+|.++..
T Consensus 354 ~VvViGgG~~g~E~A~~L~~-~g~~Vtli~~~~~l 387 (515)
T TIGR03140 354 DVAVIGGGNSGIEAAIDLAG-IVRHVTVLEFADEL 387 (515)
T ss_pred EEEEECCcHHHHHHHHHHHh-cCcEEEEEEeCCcC
Confidence 79999999999999999998 48899999987543
No 336
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.14 E-value=1.7 Score=40.30 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|...|..|++ .+.+|.+++..+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCeeEEEeCCH
Confidence 58899999999999999999 599999998765
No 337
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=82.12 E-value=1.6 Score=42.32 Aligned_cols=35 Identities=37% Similarity=0.648 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcC-------------CCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-------------PKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-------------~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++. ++.+|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 689999999999999998851 36899999998653
No 338
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=81.94 E-value=2.2 Score=42.22 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=31.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
..+|||+|..|+-.|.-+++ -+.+|.|||+++..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~i 208 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDRI 208 (454)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence 38999999999999999999 59999999999875
No 339
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=81.89 E-value=1.9 Score=42.32 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~-~g~~Vtli~~~~~~ 212 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTE-LGVKVTLVSSRDRV 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcC
Confidence 58999999999999999998 58999999988643
No 340
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=81.62 E-value=1.9 Score=42.38 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+.+|..|++ .+.+|.|+|+++..
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 218 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRR-LGAEVTILEALPAF 218 (475)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCcc
Confidence 68999999999999999998 58999999998743
No 341
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=81.54 E-value=2.3 Score=35.76 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=27.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEec
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE 85 (284)
.-.++|||+|..|...|..|.+ .+.+|.||.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~-~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKD-TGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 4569999999999999999998 589999993
No 342
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=81.50 E-value=1.9 Score=43.52 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~-~g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTR-YASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHc-cCCEEEEEEeCCc
Confidence 58999999999999999998 5899999999874
No 343
>PRK06116 glutathione reductase; Validated
Probab=81.42 E-value=2 Score=41.83 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.+++.++..
T Consensus 169 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNG-LGSETHLFVRGDAP 202 (450)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 58899999999999999998 58999999998753
No 344
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.14 E-value=2.1 Score=41.63 Aligned_cols=39 Identities=31% Similarity=0.254 Sum_probs=35.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.+.+|+|.||-||+-+.+|.-|.+..+.+++.||+-+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 456999999999999999999999767899999999865
No 345
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=81.07 E-value=1.6 Score=40.55 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 64 VGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 64 ~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.||+++|.+|++ .+.+|+|+|+....
T Consensus 1 iaGL~aA~~L~~-~G~~v~vlEa~~r~ 26 (450)
T PF01593_consen 1 IAGLAAAYYLAK-AGYDVTVLEASDRV 26 (450)
T ss_dssp HHHHHHHHHHHH-TTTEEEEEESSSSS
T ss_pred ChHHHHHHHHHh-CCCCEEEEEcCCCC
Confidence 489999999999 59999999999865
No 346
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.97 E-value=2.1 Score=42.03 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=29.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.++|||+|.+|+.+|..|.+ .+.+|.++|...
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLE-LGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 368999999999999999988 599999999764
No 347
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=80.89 E-value=2 Score=42.78 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+++|||+|..|+-+|..|++ -+.+|.|++.++..
T Consensus 353 ~VvVVGgG~~g~e~A~~L~~-~~~~Vtlv~~~~~l 386 (517)
T PRK15317 353 RVAVIGGGNSGVEAAIDLAG-IVKHVTVLEFAPEL 386 (517)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCEEEEEEECccc
Confidence 79999999999999999998 48899999988654
No 348
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=80.70 E-value=1.9 Score=42.92 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~ 89 (284)
+.-|||||.|++++|..|.++ ++.+|.+||.-..
T Consensus 4 ~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 4 KAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV 40 (500)
T ss_pred eEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence 456999999999999999997 6779999997654
No 349
>PRK10262 thioredoxin reductase; Provisional
Probab=80.64 E-value=2.2 Score=39.41 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus 148 ~vvVvGgG~~g~e~A~~l~~-~~~~Vtlv~~~~~ 180 (321)
T PRK10262 148 KVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDG 180 (321)
T ss_pred EEEEECCCHHHHHHHHHHHh-hCCEEEEEEECCc
Confidence 68999999999999999998 4889999998764
No 350
>PLN02507 glutathione reductase
Probab=80.60 E-value=2.1 Score=42.58 Aligned_cols=33 Identities=24% Similarity=0.109 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|++ -+.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRG-MGATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEEecCC
Confidence 58999999999999999998 5899999998864
No 351
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.49 E-value=2.3 Score=38.98 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-+.|||+|..|...|..|++ .+.+|.+++.-.
T Consensus 5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 47899999999999999998 589999998754
No 352
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=80.31 E-value=1.9 Score=33.34 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=28.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
+.-.++|||+|..|..-+..|.+ .+.+|.|+..-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE-AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence 34678999999999999999999 58899997644
No 353
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=80.17 E-value=2.2 Score=45.01 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|.+ .+.+|.|+|.++..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~-~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQN-LGMDVSVIHHAPGL 175 (785)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCeEEEEccCCch
Confidence 58999999999999999998 58999999988753
No 354
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=80.00 E-value=2.3 Score=43.98 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ -+.+|.+||+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~-~G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTA-LGSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHh-CCCeEEEEeccCcc
Confidence 58999999999999999998 48899999998753
No 355
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=79.98 E-value=2.4 Score=41.10 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=30.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..|++ .+.+|.|+|.++..
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~ 193 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFAN-FGSKVTILEAASLF 193 (441)
T ss_pred eEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 58999999999999999998 59999999998643
No 356
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=79.68 E-value=2.7 Score=36.79 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=28.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
.-.++|||+|..|...|..|.+ .+.+|.|++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~-~ga~V~VIs~ 41 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK-YGAHIVVISP 41 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEcC
Confidence 3578999999999999999998 5889999974
No 357
>PRK13748 putative mercuric reductase; Provisional
Probab=79.62 E-value=2.4 Score=42.46 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.++|||+|..|+-+|..|++ -+.+|.||+++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFAR-LGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEecCc
Confidence 58999999999999999998 589999999753
No 358
>PLN02546 glutathione reductase
Probab=79.57 E-value=2.4 Score=43.00 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|++ .+.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNG-LKSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCeEEEEEeccc
Confidence 58999999999999999998 5889999998864
No 359
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=79.55 E-value=2.2 Score=36.76 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=25.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+.|||.|-.|+.+|..|++ .+.+|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHH-TTSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHh-CCCEEEEEeCChH
Confidence 6799999999999999999 5999999998765
No 360
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.52 E-value=2.4 Score=38.76 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=28.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+.|||+|..|..+|..|++ .+.+|.+++..+
T Consensus 4 V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~ 34 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQ 34 (288)
T ss_pred EEEECccHHHHHHHHHHHh-CCCcEEEEeCCH
Confidence 7899999999999999998 599999998764
No 361
>PRK14694 putative mercuric reductase; Provisional
Probab=79.43 E-value=2.5 Score=41.41 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.++|||+|..|+-+|..|++ .+.+|.+++.+.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~-~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFAR-LGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence 58999999999999999998 589999999753
No 362
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.43 E-value=2.5 Score=41.17 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
++|||.|.+|.++|.-|.+ .+.+|.+.|....
T Consensus 3 v~viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKA-QGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHH-CCCEEEEECCCCc
Confidence 7899999999999888888 5999999998754
No 363
>PRK14727 putative mercuric reductase; Provisional
Probab=77.94 E-value=2.9 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.++|||+|..|+-+|..|++ .+.+|.++++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~-~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYAR-LGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEEcC
Confidence 58999999999999999998 58999999975
No 364
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.93 E-value=12 Score=38.40 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+-.+||+|.|..|..+|..|.+ .+.+|++||.-++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~ 435 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDH 435 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHH
Confidence 4679999999999999999998 48999999988754
No 365
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.87 E-value=3 Score=38.84 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=27.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+.|||+|..|+.+|..|++ .+..|.++.+..
T Consensus 3 I~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSS-KKISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence 7899999999999999999 488999998743
No 366
>PTZ00058 glutathione reductase; Provisional
Probab=77.72 E-value=2.7 Score=42.58 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|++ -+.+|.++|+++.
T Consensus 239 ~VvIIGgG~iGlE~A~~l~~-~G~~Vtli~~~~~ 271 (561)
T PTZ00058 239 RIGIAGSGYIAVELINVVNR-LGAESYIFARGNR 271 (561)
T ss_pred EEEEECCcHHHHHHHHHHHH-cCCcEEEEEeccc
Confidence 58999999999999999998 5899999999874
No 367
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=77.55 E-value=3 Score=39.24 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCe-EEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWK-VLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~ 88 (284)
.++|||+|..|+.+|..|.+. +.+ |.|++.+.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 589999999999999999873 665 99998765
No 368
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.40 E-value=3.2 Score=39.15 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-+.|||+|..|+..|..++. .+..|.+.|.-+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALA-HGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 37899999999999999998 699999998764
No 369
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=76.75 E-value=3.1 Score=44.29 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|.+ .+.+|.|+|.++.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~-~G~~VtvVe~~~~ 179 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKN-LGVETHVIEFAPM 179 (847)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 47999999999999999998 5999999999875
No 370
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.64 E-value=3.4 Score=40.03 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+++|||+|-.|.++|..|+++...+|++.++-.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 689999999999999999996447888877664
No 371
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=76.57 E-value=3.3 Score=38.61 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|...|..|++ .+.+|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~-~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAA-AGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCcEEEEecHH
Confidence 48899999999999999999 589999999764
No 372
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.54 E-value=3.4 Score=38.01 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=30.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.+.|||+|..|...|..|+. .+..|.++|.-+..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHHH
Confidence 57899999999999999998 59999999977653
No 373
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.44 E-value=3.5 Score=37.74 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|..+|..|++ .+..|.+.+.-+
T Consensus 6 kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 47899999999999999998 589999998754
No 374
>PRK04148 hypothetical protein; Provisional
Probab=76.29 E-value=2.4 Score=34.90 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=28.5
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-.+++||.| .|..+|..|++ .+..|+.+|.-+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~-~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE-SGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH-CCCEEEEEECCHH
Confidence 458999999 88888999998 5999999997764
No 375
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.12 E-value=3.6 Score=37.67 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|...|..|+. .+..|.++|.-+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 37899999999999999998 589999998754
No 376
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=75.79 E-value=3.6 Score=40.85 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHhc--CCCCeEEEeccCCcc
Q psy4112 56 DFVIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDE 90 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~--~~~~~vl~lE~G~~~ 90 (284)
.++|||+|..|+-+|..++. ..+.+|.|+|+++..
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 58999999999999965542 137899999998753
No 377
>KOG3923|consensus
Probab=75.67 E-value=4 Score=38.25 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=30.0
Q ss_pred cccEEEECCChHHHHHHHHHhc------CCCCeEEEeccCCccc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSE------NPKWKVLLLESGEDEN 91 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~------~~~~~vl~lE~G~~~~ 91 (284)
..+++|||+|..|++.|..+.+ .|..+|.|++-...+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 4689999999999999977766 2567899988666543
No 378
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=75.53 E-value=3.6 Score=40.23 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|.+ .+.+|.|++.+..
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~-~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALR-LGAEVHCLYRRTR 306 (449)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEeecCc
Confidence 69999999999999999998 5888999998754
No 379
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.29 E-value=3.7 Score=39.82 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.++|||+|..|..+|..|++ .+.+|.++|...
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKK-LGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 458999999999999999999 599999999864
No 380
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.05 E-value=4 Score=38.70 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=30.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~ 89 (284)
....++|||.|..|+.+|..|++ .++ ++.|+|....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcc
Confidence 44679999999999999999999 476 7888987753
No 381
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.90 E-value=4 Score=38.02 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|...|.+|++ .+..|.++++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAAS-KGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 58999999999999999998 589999998854
No 382
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=74.47 E-value=4.6 Score=35.44 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
-.++|||+|..|...|..|.+ .+.+|.|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLK-AGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 368999999999999999998 58899999753
No 383
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.43 E-value=4.3 Score=37.47 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|...|..|++ .+..|.+++.-.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFAR-KGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence 47899999999999999998 588999998644
No 384
>PTZ00052 thioredoxin reductase; Provisional
Probab=74.13 E-value=3.9 Score=40.66 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.++|||+|..|+-+|..|++ .+.+|.|++..
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNE-LGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcC
Confidence 68999999999999999998 58999999863
No 385
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=73.84 E-value=3.9 Score=40.49 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.++|||+|..|+-+|..|++ .+.+|.|++..
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHH-hCCcEEEEEec
Confidence 58999999999999999998 58899999964
No 386
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.48 E-value=4.4 Score=36.87 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|...|..|++ .+..|+++|.-+
T Consensus 5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH-CCCceEEEeCCH
Confidence 48899999999999999998 588999998543
No 387
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.44 E-value=17 Score=37.17 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=31.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+-.+||+|.|..|..+|..|.+ .+..|++||..++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~ 435 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMA-NKMRITVLERDISA 435 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHh-CCCCEEEEECCHHH
Confidence 4579999999999999999998 58999999977643
No 388
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.31 E-value=4.8 Score=37.04 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|+.+|..|++ .+..|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR-NGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 47899999999999999998 588999998764
No 389
>PRK10537 voltage-gated potassium channel; Provisional
Probab=73.18 E-value=19 Score=34.89 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=28.0
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
+-.+||+|.|..|..++..|.+ .+..|+++|.
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~-~g~~vvVId~ 271 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQ-RGQAVTVIVP 271 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHH-CCCCEEEEEC
Confidence 3469999999999999999987 4889999985
No 390
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=72.97 E-value=5.4 Score=34.78 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=28.9
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.++|+|.|..|..+|.+|.+ .+.+|++.+...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLE-EGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence 458999999999999999999 599999988653
No 391
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=72.88 E-value=5.3 Score=34.91 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=29.9
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~ 88 (284)
....++|||.|..|+.+|..|++ .++ +|.++|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCE
Confidence 34779999999999999999999 577 688888663
No 392
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=72.76 E-value=4.7 Score=37.64 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=27.2
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+.|+|+|..|+..|.+|++. +..|+++=+.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence 68999999999999999994 677777776664
No 393
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=72.60 E-value=5.1 Score=39.35 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=34.8
Q ss_pred cCCCCCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 46 LGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 46 ~~~~~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
|.++.....=+|+|||+|.+|..+|..|++. +.+|.++=+.+..
T Consensus 167 ~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~~ 210 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGASAVDIAPELAEV-GASVTLSQRSPPH 210 (443)
T ss_pred CCCccccCCCeEEEECCCccHHHHHHHHHhc-CCeeEEEecCCCc
Confidence 3333344456799999999999999999995 6899998887754
No 394
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=72.34 E-value=5.2 Score=36.67 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|...|..|+. .+..|.+.|.-.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 37899999999999999998 589999998654
No 395
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=71.79 E-value=5.4 Score=37.80 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=31.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~ 88 (284)
.....++|||+|-.|+.+|..|++. ++ ++.++|...
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 3457899999999999999999994 76 899999865
No 396
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.36 E-value=4 Score=39.23 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=32.3
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
+.+--|+.|||+|.+|.-+|..|+-- -..|.|||-.+.-
T Consensus 351 LF~gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~eL 389 (520)
T COG3634 351 LFKGKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEL 389 (520)
T ss_pred ccCCceEEEECCCcchHHHHHhHHhh-hheeeeeecchhh
Confidence 55667999999999999999999973 4579999977643
No 397
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=71.25 E-value=5.4 Score=32.11 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=28.0
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~ 90 (284)
.-++|||.|..|+.+|..|+.. +. ++.++|-..-.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCccee
Confidence 4589999999999999999994 65 68888866543
No 398
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=70.97 E-value=7 Score=31.64 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=27.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~ 90 (284)
++|||.|..|+.+|..|+.. +. ++.+++.....
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v~ 35 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDTVE 35 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCcC
Confidence 78999999999999999994 65 78888866543
No 399
>PRK12831 putative oxidoreductase; Provisional
Probab=70.15 E-value=5.7 Score=39.13 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..|.+ -+.+|.|++....
T Consensus 283 ~VvVIGgG~va~d~A~~l~r-~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALR-LGAEVHIVYRRSE 315 (464)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCEEEEEeecCc
Confidence 79999999999999999998 4788999987653
No 400
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.06 E-value=5.7 Score=38.43 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.++|+|.|..|..+|..|.+ .+..|.++|.-+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~-~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG-ENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEECCH
Confidence 48999999999999999998 489999998754
No 401
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=68.35 E-value=5.2 Score=39.49 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
=.|+|||+|.+|+-+|..|++. ..+|.++.+++.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~ 238 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKV-AKEVHIASRASE 238 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence 3599999999999999999984 789999988753
No 402
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=67.18 E-value=7.7 Score=37.90 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=28.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~ 88 (284)
=.++|||+|..|+-+|..|.+. +. +|.+++...
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecC
Confidence 3699999999999999999884 55 899999864
No 403
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=67.18 E-value=6.7 Score=37.90 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.+.|||.|..|+.+|..|++ .+.+|.+++....
T Consensus 2 kI~vIGlG~~G~~lA~~La~-~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD-LGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHh-cCCeEEEEECCHH
Confidence 37899999999999999998 5899999987653
No 404
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.91 E-value=7.5 Score=35.97 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|..+|.+|++ .+..|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~-~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASA-NGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 58899999999999999998 589999998754
No 405
>KOG2852|consensus
Probab=66.83 E-value=2.6 Score=39.53 Aligned_cols=36 Identities=36% Similarity=0.630 Sum_probs=30.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCC-----CCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENP-----KWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~-----~~~vl~lE~G~ 88 (284)
..-.++|||+|..|+.+|.-|++.+ ...|.++|.-.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 3467899999999999999999963 26799999654
No 406
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=66.60 E-value=7.7 Score=37.16 Aligned_cols=34 Identities=32% Similarity=0.347 Sum_probs=29.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.-+++|||+|..|..+|..|.. -+.+|.+++...
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~-lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANG-LGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence 3569999999999999999998 477899998653
No 407
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=66.55 E-value=8.6 Score=30.40 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=27.1
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIG-GGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg-~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+.||| +|..|..+...|.+.+...++.+-....
T Consensus 2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred EEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 67999 9999999999999988888666654443
No 408
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=66.46 E-value=10 Score=30.65 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=28.1
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCe-EEEeccC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLESG 87 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G 87 (284)
..-.++|||+|-+|..++..|.+. +.+ |.|+-+-
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 346799999999999999999995 655 8887653
No 409
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=66.43 E-value=7.8 Score=37.47 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=30.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.-.+||+|.|..|..+|..|.+ .+..|+++|.-+.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~-~~~~v~vid~~~~ 265 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEK-EGYSVKLIERDPE 265 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence 3559999999999999999998 5899999987654
No 410
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=66.08 E-value=8.3 Score=35.92 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCC-eEEEecc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKW-KVLLLES 86 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~ 86 (284)
-+.|||+|..|+.+|..|+.. +. .|+++|.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeC
Confidence 478999999999999999984 54 7999998
No 411
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=65.71 E-value=7.6 Score=35.39 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=27.5
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+.|||.|..|.++|..|.+ .+.+|.+++..+
T Consensus 3 I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 7799999999999999998 488999998654
No 412
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=65.69 E-value=12 Score=27.62 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=27.8
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~ 86 (284)
.-.++|+|.|..|..+|..|.+....+|.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346999999999999999999843567888877
No 413
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=65.56 E-value=9.2 Score=33.53 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=26.7
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIG-GGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg-~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+.||| +|..|..+|..|++ .+.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~-~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAK-AGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence 68997 79999999999998 588999887654
No 414
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.11 E-value=9.3 Score=36.99 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=28.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-++|+|+|..|.++|..|.+ .+.+|.+.|...
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~-~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHK-LGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 37999999999999999998 599999998654
No 415
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=63.99 E-value=8.6 Score=37.39 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-+.|||.|..|+.+|..|++ .+.+|.+++.-+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~-~G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFAS-RQKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHh-CCCEEEEEeCCHH
Confidence 47899999999999999999 5899999987553
No 416
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=63.56 E-value=9.1 Score=38.10 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|...|..|+. .+.+|.|.+.-+
T Consensus 6 kIavIG~G~MG~~iA~~la~-~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLL-AGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 37899999999999999998 599999998754
No 417
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=63.37 E-value=12 Score=31.79 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=27.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCC-eEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKW-KVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~ 88 (284)
++|||.|..|+.+|..|++. +. ++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 78999999999999999994 66 599988765
No 418
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=63.07 E-value=9.5 Score=38.20 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||+|..|.-.|..|+. .+..|.+.|.-+
T Consensus 7 kV~VIGaG~MG~gIA~~la~-aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAAS-AGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 48899999999999999998 599999998764
No 419
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=62.71 E-value=11 Score=34.64 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=31.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPK-WKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~~ 90 (284)
.....++|||.|-.|+.+|..|++. + .++.|+|.....
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V~ 66 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDVC 66 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEec
Confidence 3457899999999999999999994 6 689999966543
No 420
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=62.32 E-value=11 Score=35.12 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCC--CeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPK--WKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~--~~vl~lE~G~~ 89 (284)
.+.|||+|..|+++|..|++. + ..|.++|....
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCch
Confidence 478999999999999999984 6 47999997653
No 421
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=62.30 E-value=9.2 Score=36.40 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=25.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKW-KVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~ 89 (284)
++|+|+|..|..+|..|++.... +|+|.++-..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~ 34 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE 34 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH
Confidence 68999999999999999996555 8888776654
No 422
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=62.00 E-value=11 Score=36.91 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.-.++|+|.|+.|..+|..+.. .+.+|+++|.-+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChh
Confidence 3468999999999999999887 4889999987654
No 423
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=61.67 E-value=13 Score=32.33 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~ 89 (284)
....-++|||.|..|+.+|..|+.. +. ++.++|....
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~v 56 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDHV 56 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCEE
Confidence 3457899999999999999999995 65 7888887643
No 424
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=61.19 E-value=14 Score=27.42 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=25.9
Q ss_pred EEEECCChHHHHHHHHHhcCCC---CeEEEe-ccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPK---WKVLLL-ESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~---~~vl~l-E~G~~ 89 (284)
+.|||+|..|..++..|.+ .+ .+|+++ ++.+.
T Consensus 2 I~iIG~G~mg~al~~~l~~-~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLA-SGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTS-GGEEEEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHHH-CCCCceeEEeeccCcHH
Confidence 5689999999999999999 46 788865 65543
No 425
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.11 E-value=9.9 Score=39.72 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-+.|||+|..|.-.|..++. .+..|.++|.-+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSAS-KGVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 48899999999999999998 5999999997754
No 426
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=61.00 E-value=13 Score=32.91 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
....++|||.|..|+.+|..|+...-.++.++|....
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4578999999999999999999953347888876643
No 427
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=60.99 E-value=10 Score=35.02 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=27.0
Q ss_pred EEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKW-KVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~ 89 (284)
+.|||+|..|..+|..|+.. +. .|.++|.-..
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 46999999999999999973 54 9999998753
No 428
>PRK06223 malate dehydrogenase; Reviewed
Probab=60.61 E-value=12 Score=34.41 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=26.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCC-eEEEeccC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKW-KVLLLESG 87 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G 87 (284)
.+.|||+|..|..+|..++.. +. .|.++|.-
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~ 35 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIV 35 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECC
Confidence 588999999999999999984 44 89999973
No 429
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=60.42 E-value=11 Score=33.43 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.1
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCC---eEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKW---KVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~---~vl~lE~G~ 88 (284)
-.++|+|+|.+|..+|..|.+. +. +|.++++-+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 4689999999999999999984 65 588888864
No 430
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=60.15 E-value=11 Score=39.53 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCe-EEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWK-VLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..+.+. +.+ |.|++.+..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSE 605 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCc
Confidence 699999999999999999884 665 999998754
No 431
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=60.13 E-value=13 Score=34.55 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.1
Q ss_pred EEEECCChHHHHHHHHHhcCCC--CeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPK--WKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~--~~vl~lE~G~~ 89 (284)
+.|||+|..|.++|..|++. + ..|.+++.-..
T Consensus 3 I~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 78999999999999999984 5 47999987543
No 432
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=59.74 E-value=14 Score=30.77 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=26.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+-+||-|..|...|.+|.+ .+.+|.+.++-+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~-~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAK-AGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHh-cCCeEEeeccch
Confidence 46799999999999999998 599999988554
No 433
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=59.57 E-value=14 Score=30.98 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=27.9
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..-++|+|+|.+|.-+|.-|.. -+.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~-lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKG-LGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH-TT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhH-CCCEEEeccCCH
Confidence 3789999999999999998888 489999998654
No 434
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=59.55 E-value=11 Score=39.40 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=29.7
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
--+.|||+|..|.-.|..++. .+..|.++|.-..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 348899999999999999998 5999999996653
No 435
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=59.47 E-value=13 Score=34.93 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=28.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~ 89 (284)
.-+.|||+|..|..+|..++. .+. .|.|+|.-+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~-~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVL-KNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCCeEEEEeCCCc
Confidence 468999999999999999887 464 7999987554
No 436
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=59.41 E-value=14 Score=33.20 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=31.3
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~ 90 (284)
.....++|||.|..|+.+|..|+.. ++ ++.+++.....
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ve 68 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDTVS 68 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEEC
Confidence 4568899999999999999999995 54 78888866543
No 437
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=59.33 E-value=12 Score=37.43 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+.|||+|..|.-.|..|+. .+..|.+.|.-+.
T Consensus 10 V~VIGaG~MG~gIA~~la~-aG~~V~l~D~~~e 41 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQ-AGHTVLLYDARAG 41 (507)
T ss_pred EEEECCCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 7899999999999999998 5999999986553
No 438
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=58.99 E-value=15 Score=30.36 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=27.4
Q ss_pred EEEECC-ChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGG-GVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~-G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
++|+|+ |..|..++..|.+. +.+|.++=+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch
Confidence 689996 99999999999994 799998877654
No 439
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=58.84 E-value=14 Score=33.45 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCC----------CCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENP----------KWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~----------~~~vl~lE~G~~~ 90 (284)
.....++|||+|-.|+.++..|++.. +.++.|+|...-.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 34588999999999999999999841 2378888766533
No 440
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=58.78 E-value=13 Score=34.32 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=28.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.++|||.|..|..+|.+|.. -+.+|.+.++-.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~-~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSA-LGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 468999999999999999998 478999988654
No 441
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=58.57 E-value=13 Score=34.62 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.7
Q ss_pred EEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112 57 FVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~ 90 (284)
++|||+|.+|..+|..|.+. +...|.+++.....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 58999999999999987763 56677777766544
No 442
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=58.26 E-value=17 Score=30.94 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCcccEEEECCCh-HHHHHHHHHhcCCCCeEEEeccC
Q psy4112 52 LSEYDFVIIGGGV-GGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 52 ~~~~d~iivg~G~-~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
.....++|||+|- .|..+|..|.+ .+.+|.++.+-
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~-~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLN-RNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhh-CCCEEEEEECC
Confidence 4568899999996 69989999998 47789998864
No 443
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=57.87 E-value=13 Score=36.91 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~ 89 (284)
.+.|||.|..|+.+|..|++. .+.+|+.+|....
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 488999999999999999984 2588999987654
No 444
>PRK08328 hypothetical protein; Provisional
Probab=57.83 E-value=16 Score=32.60 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=28.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
...-++|||.|-.|+.+|..|+...-.++.++|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 346799999999999999999995334677876554
No 445
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=57.45 E-value=13 Score=36.18 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.+.|||+|-.|++.|..|++. +..|+.+|.-+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCHH
Confidence 367999999999999999995 899999997764
No 446
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=57.13 E-value=16 Score=32.07 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=29.6
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~ 88 (284)
....++|||.|-.|+.+|..|+.. +. ++.++|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 457899999999999999999995 65 588888764
No 447
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=56.92 E-value=14 Score=36.39 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=28.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCC------eEEEeccCCcc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKW------KVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~------~vl~lE~G~~~ 90 (284)
++|||+|..||.++..|+. .++ ++.|+|.....
T Consensus 2 VlvVGaGGlGcE~lKnLal-~Gv~~g~~G~I~IvD~D~Ie 40 (435)
T cd01490 2 VFLVGAGAIGCELLKNFAL-MGVGTGESGEITVTDMDNIE 40 (435)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCcCCCCeEEEECCCCcc
Confidence 7899999999999999998 466 89999987643
No 448
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=56.86 E-value=15 Score=36.37 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..+.+.....|.++|..+.
T Consensus 285 ~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 285 KVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 6899999999999987777643457999997764
No 449
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=56.46 E-value=14 Score=33.80 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=27.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+-|||.|..|..+|.+|++ .+.+|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~-~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAK-AGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 6799999999999999998 589999998765
No 450
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=56.46 E-value=18 Score=32.42 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.....++|||.|-.|+.+|..|+...-.++.++|.....
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 345789999999999999999999533468887766543
No 451
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=56.45 E-value=17 Score=32.53 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=26.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEec
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE 85 (284)
.-.++|||||..+.--+..|.+ .+.+|.|+-
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~-~gA~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLK-KGCYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 4569999999999999999988 588888884
No 452
>PRK08017 oxidoreductase; Provisional
Probab=56.10 E-value=17 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=26.5
Q ss_pred EEEECC-ChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGG-GVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~-G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
++|+|+ |..|..+|.+|.+ .+.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~-~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKR-RGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 889997 9999999999998 488998886543
No 453
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=55.95 E-value=15 Score=37.92 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=31.2
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
...-++|||+|.-||.+|..|+...=.++.++|.+...
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve 374 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVS 374 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEEC
Confidence 45789999999999999999999533468888888654
No 454
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=55.79 E-value=17 Score=32.64 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=27.1
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
++|||+|..|+.++..|+...-.++.|+|....
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 789999999999999999953446888886643
No 455
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=55.72 E-value=17 Score=33.39 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=27.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCC-eEEEeccC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKW-KVLLLESG 87 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G 87 (284)
-.++|||+|-+|..+|..|.+. +. +|.|+++-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 4689999999999999999985 54 78888764
No 456
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=55.49 E-value=16 Score=37.74 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=28.2
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
=.++|||+|..|.-+|..+.+....+|.|++++..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 36899999999999999988743346999987753
No 457
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=55.39 E-value=18 Score=33.98 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++|||+|.-|+.+|..|+...=.++.++|.+...
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve 35 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVS 35 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 7899999999999999999533478888877644
No 458
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=55.15 E-value=14 Score=38.75 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-+.|||+|..|.-.|..++. .+..|.++|.-+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHH
Confidence 48899999999999999998 5999999987653
No 459
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=54.80 E-value=18 Score=35.37 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=30.1
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.-.++|||.|..|..+|.++.. -+.+|+++|.-+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCChh
Confidence 4468999999999999999997 5889999987653
No 460
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=54.22 E-value=16 Score=34.70 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.2
Q ss_pred cEEEECCChHHHHHHHHHhcCCC--------CeEEEecc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPK--------WKVLLLES 86 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~--------~~vl~lE~ 86 (284)
.+.|||+|.-|.++|..|+++ + .+|.+..+
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence 368999999999999999984 6 78999876
No 461
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=53.72 E-value=18 Score=33.78 Aligned_cols=33 Identities=21% Similarity=0.408 Sum_probs=27.8
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCC--eEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKW--KVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~--~vl~lE~G~ 88 (284)
.-+.|||+|..|..+|..|+.. +. .++|+|.-.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~ 41 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK 41 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 4789999999999999999984 55 689998743
No 462
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=53.32 E-value=17 Score=33.51 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=26.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCC--CeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPK--WKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~--~~vl~lE~G~ 88 (284)
.+.|||.|..|..+|..|.+. + .+|.+++..+
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~ 41 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSA 41 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCH
Confidence 588999999999999999984 5 3788887654
No 463
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=53.19 E-value=16 Score=38.22 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-+.|||+|..|.-.|..++...+..|.++|.-+.
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4889999999999999998336999999997643
No 464
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=53.15 E-value=18 Score=39.49 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPK-WKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~ 89 (284)
.++|||+|..|+-+|..+.+..+ .+|.++.++..
T Consensus 670 rVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~ 704 (1019)
T PRK09853 670 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 704 (1019)
T ss_pred EEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence 69999999999999988776434 48999998753
No 465
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.07 E-value=20 Score=30.87 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=26.1
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGG-GVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~-G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-++|+|+ |..|..+|.+|++ .+.+|+++.+.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~-~g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLA-EGYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHH-CCCEEEEeeCCH
Confidence 3678874 8999999999998 488999986543
No 466
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=52.98 E-value=16 Score=38.17 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-+.|||+|..|.-.|..++...+..|.++|.-+.
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4889999999999999988425999999997753
No 467
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=52.97 E-value=21 Score=30.94 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=29.8
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~ 89 (284)
...-++|||.|..|+.+|..|+.. +. ++.++|....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d~v 56 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRTV 56 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECCcc
Confidence 357799999999999999999994 65 5888886653
No 468
>KOG1336|consensus
Probab=52.66 E-value=17 Score=36.00 Aligned_cols=36 Identities=25% Similarity=0.155 Sum_probs=31.3
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
.--++|||+|..|..+|..|.. .+.+|.+++.-+..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~-~~~~VT~V~~e~~~ 248 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVS-KAKSVTVVFPEPWL 248 (478)
T ss_pred CceEEEECchHHHHHHHHHHHh-cCceEEEEccCccc
Confidence 4458999999999999999999 49999999977654
No 469
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=52.60 E-value=24 Score=28.49 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=27.3
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.++|||.|..|..+|..|.+....+|.++++..
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4589999999999999999984236788887643
No 470
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=52.43 E-value=24 Score=28.85 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=27.0
Q ss_pred cEEEECC-ChHHHHHHHHHhcCCC-CeEEEeccCCc
Q psy4112 56 DFVIIGG-GVGGSVVANRLSENPK-WKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~-G~~g~~~a~~l~~~~~-~~vl~lE~G~~ 89 (284)
.+.|||+ |..|..+|..|....- ..+.+++.-..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 3789999 9999999999998532 24888887643
No 471
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=52.13 E-value=22 Score=31.83 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=29.1
Q ss_pred EEEEC-CChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 57 FVIIG-GGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg-~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++|.| +|..|..++.+|.+. +..|..+.+....
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~ 36 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDG 36 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCcc
Confidence 78999 599999999999994 9999999987654
No 472
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=52.11 E-value=19 Score=32.01 Aligned_cols=31 Identities=35% Similarity=0.436 Sum_probs=26.6
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
+.|+|.|..|..+|.+|+. .+..|.+--+..
T Consensus 4 ~~i~GtGniG~alA~~~a~-ag~eV~igs~r~ 34 (211)
T COG2085 4 IAIIGTGNIGSALALRLAK-AGHEVIIGSSRG 34 (211)
T ss_pred EEEeccChHHHHHHHHHHh-CCCeEEEecCCC
Confidence 6799999999999999999 589999874443
No 473
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=51.93 E-value=18 Score=34.02 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=23.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEec
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE 85 (284)
-.+.|||+|.-|+++|..|+++ + .|.++-
T Consensus 8 mkI~IiGaGa~G~alA~~La~~-g-~v~l~~ 36 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR-G-PTLQWV 36 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-CEEEEe
Confidence 4589999999999999999984 5 455554
No 474
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=51.74 E-value=21 Score=32.36 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
-.++|+|+|-+|..+|..|++. +.+|.++.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 3589999999999999999984 7789888654
No 475
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=51.67 E-value=18 Score=36.41 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.=.|+|||+|.+|+-+|..|++. ..+|.+.=+.+
T Consensus 181 f~gKrVlVVG~g~Sg~DIa~el~~~-a~~v~~s~R~~ 216 (531)
T PF00743_consen 181 FKGKRVLVVGGGNSGADIAVELSRV-AKKVYLSTRRG 216 (531)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHTTT-SCCEEEECC--
T ss_pred cCCCEEEEEeCCHhHHHHHHHHHHh-cCCeEEEEecc
Confidence 3345799999999999999999995 56676655554
No 476
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=51.47 E-value=23 Score=30.72 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=29.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGED 89 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~ 89 (284)
...-++|||.|..|+.+|..|+.. ++ ++.++|-...
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~v 54 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRLV 54 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCcC
Confidence 357899999999999999999994 65 5888886643
No 477
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=51.47 E-value=22 Score=32.84 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.0
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
--++|||.|..|.+.|..|.+ .+..|-++....+.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~-~g~~v~i~g~d~~~ 38 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKE-AGLVVRIIGRDRSA 38 (279)
T ss_pred cEEEEECCchHHHHHHHHHHH-cCCeEEEEeecCcH
Confidence 358899999999999999999 59999888777654
No 478
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=51.38 E-value=17 Score=33.18 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
+||.|+|--.+.+|.+|.+ .+.+|+++|--..
T Consensus 1 vivrG~gdiAsgva~~L~~-aGf~Vv~~e~~~P 32 (256)
T TIGR03309 1 VVVRGAGDLATGVAHRLHR-SGFKVLMTETEQP 32 (256)
T ss_pred CEEecCchHHHHHHHHHHh-CCCEEEEccCCCC
Confidence 4788999999999999999 6999999996643
No 479
>PRK00536 speE spermidine synthase; Provisional
Probab=51.26 E-value=18 Score=33.19 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=26.5
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.=.|+|||||-+|. |.++.+.+. +|.++|--+.
T Consensus 73 pk~VLIiGGGDGg~--~REvLkh~~-~v~mVeID~~ 105 (262)
T PRK00536 73 LKEVLIVDGFDLEL--AHQLFKYDT-HVDFVQADEK 105 (262)
T ss_pred CCeEEEEcCCchHH--HHHHHCcCC-eeEEEECCHH
Confidence 35799999999987 478888654 9999997653
No 480
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=51.09 E-value=24 Score=30.05 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=26.9
Q ss_pred ccEEEECC-ChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112 55 YDFVIIGG-GVGGSVVANRLSENPKWKVLLLESG 87 (284)
Q Consensus 55 ~d~iivg~-G~~g~~~a~~l~~~~~~~vl~lE~G 87 (284)
-.++|+|+ |..|..+|..|++ .+.+|.++.+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAR-EGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 56899996 9999999999998 47899988654
No 481
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=50.79 E-value=22 Score=34.87 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=29.4
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
-.++|+|.|..|..+|.+|.. -+.+|++.|.-+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~-~Ga~ViV~d~dp~ 246 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRG-LGARVIVTEVDPI 246 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCch
Confidence 358999999999999999988 4889999987653
No 482
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=50.64 E-value=21 Score=33.20 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=28.3
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
..-.++|||+|..|..+|..|.+....+|.++++-.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 345699999999999999999874346788887643
No 483
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=50.63 E-value=21 Score=32.52 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|||.|..|...|..|++ .+.+|++.+..+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~-~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLK-AGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 47899999999999999998 588999887654
No 484
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=50.35 E-value=23 Score=32.91 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=27.7
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++|||+|-.|+.+|..|+...-.++.|+|.....
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve 35 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTID 35 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 7899999999999999999533468888876543
No 485
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=50.25 E-value=18 Score=34.20 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCccc
Q psy4112 51 ILSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDEN 91 (284)
Q Consensus 51 ~~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~~ 91 (284)
....-.++|||||.++.-++..|.+. +..+|.+|=+++...
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~ 228 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF 228 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC
Confidence 45668899999999999999999985 235788888776543
No 486
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=50.14 E-value=21 Score=32.80 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+-|||.|..|...|.+|++ .+.+|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~-~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLK-QGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 47899999999999999998 588999998754
No 487
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=50.05 E-value=23 Score=32.78 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=29.6
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.-.++|||.|..|..+|..|.. -+.+|.++++-+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~-~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA-LGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 4579999999999999999998 488999997764
No 488
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=50.04 E-value=20 Score=34.36 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=28.5
Q ss_pred ccEEEEC-CChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIG-GGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg-~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-.+.||| .|..|..+|..|.+ .+..|.+.+.-.
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~-~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTL-SGYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHH-CCCeEEEeCCCc
Confidence 4588998 89999999999999 589999998643
No 489
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=49.63 E-value=22 Score=34.93 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=25.9
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.++|||+|..|+-+|..+.+....+|.++|...
T Consensus 283 ~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 283 HVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 599999999999999877764334788777554
No 490
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=49.56 E-value=23 Score=32.62 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCe-EEEeccC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWK-VLLLESG 87 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G 87 (284)
-++|+|+|-+|.++|..|++. +.+ |.|+.+-
T Consensus 128 ~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~ 159 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD-GAKEITIFNIK 159 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence 578999999999999999984 665 8888764
No 491
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=49.46 E-value=20 Score=33.69 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
-+.|||+|..|.-.|..++. .+..|.+.|.-.
T Consensus 5 kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhh-cCCceEEEeCCH
Confidence 46799999999999999998 689999999874
No 492
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.35 E-value=23 Score=34.66 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
.+.|+|.|.+|..+|..|.+ .+.+|.+.|...
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~-~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVK-LGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 58999999999999998888 589999999765
No 493
>PRK09982 universal stress protein UspD; Provisional
Probab=49.33 E-value=27 Score=28.10 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=23.6
Q ss_pred CCcccEEEECCChHHHH----HHHHHhcCCCCeEEEe
Q psy4112 52 LSEYDFVIIGGGVGGSV----VANRLSENPKWKVLLL 84 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~----~a~~l~~~~~~~vl~l 84 (284)
...+|.||+|++..|.. +|.+..+.....||++
T Consensus 101 ~~~aDLIVmG~~~~~~~~~~~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 101 KEQCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIV 137 (142)
T ss_pred HcCCCEEEEeCChhHHHHHHHHHHHHHhcCCCCEEEe
Confidence 45689999999865542 5666666677788875
No 494
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=48.98 E-value=23 Score=33.34 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112 57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90 (284)
Q Consensus 57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~ 90 (284)
++|||+|..|+.+|..|+...-.++.|+|.....
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 7899999999999999998544578888877644
No 495
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=48.81 E-value=26 Score=30.91 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=26.4
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEec
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE 85 (284)
.-.++|||+|-.|.--|..|.+ .+-+|.|+-
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~-~ga~v~Vvs 42 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLK-AGADVTVVS 42 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-cCCEEEEEc
Confidence 3479999999999999999998 588888764
No 496
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=48.59 E-value=25 Score=33.60 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCC
Q psy4112 53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGE 88 (284)
Q Consensus 53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~ 88 (284)
...-++|||.|-.|+.+|..|+.. ++ ++.+++...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 456799999999999999999995 65 788888764
No 497
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=48.58 E-value=22 Score=38.47 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=28.6
Q ss_pred ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88 (284)
Q Consensus 55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~ 88 (284)
=.++|||+|..|.-+|..+.+. +.+|.++..+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecC
Confidence 3699999999999999998884 77899998775
No 498
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=47.98 E-value=25 Score=33.75 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=31.1
Q ss_pred CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
....-++|||.|..|+.+|..|+...-.++.++|....
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~v 76 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEE
Confidence 44578999999999999999999953348999887753
No 499
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.60 E-value=27 Score=33.92 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.++|+|.|.+|..+|..|.+ .+.+|.+.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~-~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRK-NGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 48999999999999999988 5899999987553
No 500
>PLN02494 adenosylhomocysteinase
Probab=47.23 E-value=27 Score=34.76 Aligned_cols=35 Identities=23% Similarity=0.113 Sum_probs=30.2
Q ss_pred cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89 (284)
Q Consensus 54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~ 89 (284)
.-.++|+|.|..|..+|.++.. -+.+|+++|.-+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka-~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA-AGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 4568999999999999999987 4889999998764
Done!