RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4112
(284 letters)
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 242 bits (621), Expect = 7e-77
Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 30/238 (12%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG--EDENIYTNIPLLAHFNSL-THFN 109
+++D+V++G G G+VVA RL+E+P VL+LE+G ++ + PLLA + F+
Sbjct: 1 ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFD 60
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
W Y Q G PRG+ LGGSS ++YM+ RG+ +D+D Y A G++G
Sbjct: 61 WNYTTT-----AQ-AGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEG 114
Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
W +D++ ++ K+E AD H+ G G + ++
Sbjct: 115 WNWDNIQQFVRKNEMVV---PPADNHNTSGE---FIPAV---------HGTNGSVSISLP 159
Query: 229 PYQNLLTEKFTQAACELGYRI---YDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
+ L ++ E D G S +++ GQR S++ AYL+
Sbjct: 160 GFPTPLDDRVLATTQEQSEEFFFNPDMGT--GHPLGISWSIASVGNGQRSSSSTAYLR 215
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 242 bits (620), Expect = 2e-76
Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 46/268 (17%)
Query: 32 YLRQQGLEFRENIFLGNKPILS-EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG--- 87
YL Q ++ + ++ + YD++I GGG+ G VA +L+ENPK KVL++E G
Sbjct: 1 YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60
Query: 88 EDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNY 147
++ P T + Y P + N GKGLGGS+++N
Sbjct: 61 SNDGAIIEDPNAYGQIFGTTVDQNYLTV-----PL---INNRTNNIKAGKGLGGSTLING 112
Query: 148 MIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNT---------SEFLDADIHSRE 197
+TR +K D++E G +GW +D++ +Y K+E +A H
Sbjct: 113 DSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTN 172
Query: 198 GPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGY-RIYDYTGIE 256
G ++ + + + LG D+
Sbjct: 173 GTVQSGARDNGQPWSP--------------------IMKALMNTVSALGVPVQQDFLCGH 212
Query: 257 PATEGFSKLQSTLSK-GQRYSANRAYLK 283
P G S + + L + R A RA+L
Sbjct: 213 P--RGVSMIMNNLDENQVRVDAARAWLL 238
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 237 bits (606), Expect = 2e-74
Identities = 56/245 (22%), Positives = 91/245 (37%), Gaps = 44/245 (17%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG---EDENIYTNIPLLAHFNSLTHFNW 110
D++I GGG+ G A RL+ENP VL++ESG D + +
Sbjct: 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 78
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGW 169
Y+ N G GLGGS+++N +TR +K D++E GN+GW
Sbjct: 79 AYETV-----EL--ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGW 131
Query: 170 GYDSVLKYFLKSENNTS---------EFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKE 220
+D+V Y L++E + + +A H G + +
Sbjct: 132 NWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGD----------- 180
Query: 221 GPLKVTNIPYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSK-GQRYSAN 278
+ + + A + G D+ +P G S +TL + R A
Sbjct: 181 ---------DYSPIVKALMSAVEDRGVPTKKDFGCGDP--HGVSMFPNTLHEDQVRSDAA 229
Query: 279 RAYLK 283
R +L
Sbjct: 230 REWLL 234
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 230 bits (589), Expect = 6e-72
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 38/241 (15%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG---EDENIYTNIPLLAHFNSLTHFN 109
S +DFVI+GGG G+ VA RL+ENP VL++E+G ++ P A + ++
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCP--RGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNK 167
W YK ++ P RGK LGGSS LNY + G+K +D +E G K
Sbjct: 65 WAYKTT-----MV-RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGK 118
Query: 168 GWGYDSVLKYFLKSENNTSE----FLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPL 223
W +D ++ Y KS + + + GP+ +++ +
Sbjct: 119 EWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELID-------------- 164
Query: 224 KVTNIPYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
E T+A +G I + E +G + T+ +GQR +
Sbjct: 165 ------EMAPFRENLTKAWKSMGQPLIENIYDGEM--DGLTHCCDTIYRGQRSGSFLFVK 216
Query: 283 K 283
Sbjct: 217 N 217
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 217 bits (556), Expect = 2e-67
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 38/236 (16%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIP--LLAHFNSLTHFNW 110
E+D++++GGG G+ VA RLSE+P V L+E+G +D + + + ++W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLE-SGYDW 71
Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKGW 169
Y +E PQ G N R K +GG S N I ++D D +EA G GW
Sbjct: 72 DYPIE-----PQENG--NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGW 124
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
++ + + E N DA H GP+ + N+P ++ P
Sbjct: 125 NAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKD------------P------- 165
Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTL-SKGQRYSANRAYLK 283
A + G R TG G + Q + G R S++ +Y+
Sbjct: 166 ----TGVALLDACEQAGIPRAKFNTG-TTVVNGANFFQINRRADGTRSSSSVSYIH 216
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 216 bits (553), Expect = 4e-67
Identities = 63/234 (26%), Positives = 98/234 (41%), Gaps = 37/234 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
D VI+GGG GS++A RLSE+P +VLL+E+G E + P ++W
Sbjct: 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQG-RSYDWD 75
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDT-YEAAGNKGWG 170
Y+ E Q G RG+ +GGSS L+ M Y RG+ D+ +A+G++ WG
Sbjct: 76 YRTE-----AQ-AGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWG 129
Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPY 230
+D +L F E++ IH + GPL +
Sbjct: 130 WDELLPVFQAIEDH--PLGGDGIHGKGGPLPIHL----------------------PADE 165
Query: 231 QNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
+ L F +A LG R+ + G + + G+R +A A+L
Sbjct: 166 VSPLARAFIEAGASLGLPRLEGHNS--GEMIGVTPNSLNIRDGRRVTAADAWLT 217
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 206 bits (526), Expect = 5e-63
Identities = 50/234 (21%), Positives = 74/234 (31%), Gaps = 53/234 (22%)
Query: 50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFN 109
+ YD+VI+GGG G +A LSE +KVL+LE G Y N+ F
Sbjct: 22 ELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQE 79
Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGW 169
K + + D RG+ LGG+SI+N +Y R N Y A W
Sbjct: 80 DDGKTP-----VE-RFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYS----ASGVDW 129
Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
D V + + E+ K +
Sbjct: 130 DMDLVNQTYEWVEDT------------------------------------IVYKPNSQS 153
Query: 230 YQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
+Q++ F +A + ++ EG ST A L
Sbjct: 154 WQSVTKTAFLEAGVHPN---HGFSL--DHEEGTRITGSTFDNKGTRHAADELLN 202
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 181 bits (461), Expect = 2e-53
Identities = 43/237 (18%), Positives = 73/237 (30%), Gaps = 47/237 (19%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIP----LLAHFNSLTHF 108
YD++I+G G GG + A+RLSE K KVLLLE G + +
Sbjct: 7 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65
Query: 109 NWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKG 168
++ + +P + G +GG + +N +Y N D+ + G
Sbjct: 66 PGLFESLFTDSNP---FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SSVG 117
Query: 169 W--GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVT 226
W + + Y K + D S +G +
Sbjct: 118 WPSSWTNHAPYTSKLSSR---LPSTDHPSTDGQRYLEQSF-------------------- 154
Query: 227 NIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
N++++ + I D F G+R YL+
Sbjct: 155 -----NVVSQ-LLKGQGYNQATINDNPN--YKDHVFGYSAFDFLNGKRAGPVATYLQ 203
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 70.5 bits (172), Expect = 6e-14
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 22/148 (14%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-----EDENIYTNIPLLAHFN---- 103
V+IG G G +V A RL E + L+LE G + +L
Sbjct: 4 GYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSW 62
Query: 104 -------SLTHFNWGYKLEKNEEHPQCLGMY--NDQCPCPRGKGLGGSSILNYMIYTRGN 154
L F W + +N + + DQ G+G+GG S++N +
Sbjct: 63 FKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPK 122
Query: 155 KKDYDTYEAAGNKGWGYDSVLKYFLKSE 182
+ ++ + + +YF ++
Sbjct: 123 RSYFE---EILPRVDSSEMYDRYFPRAN 147
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 60.9 bits (147), Expect = 1e-10
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 21/149 (14%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED-ENIYTNIPLLAHF-NSLTHFNW 110
++IG G GG+V A RL++ ++E G + ++ + N W
Sbjct: 10 DRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 68
Query: 111 GYKLEK-NEEHPQCLGMYNDQCPCP--------------RGKGLGGSSILNYMIYTRGNK 155
+ G+ +G+G+GG S++N + +
Sbjct: 69 LADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKR 128
Query: 156 KDYDTYEAAGNKGWGYDSVLKYFLKSENN 184
+E + KYF ++
Sbjct: 129 NY---FEEILPSVDSNEMYNKYFPRANTG 154
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 53.7 bits (128), Expect = 2e-08
Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 13/155 (8%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
+YD VI+G G G A L KV + + GE + + + + AH + +
Sbjct: 46 KYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID---SGLKIGAHKKNTVEYQKNID 101
Query: 114 LEKNEEHPQCLGM------YNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA--- 164
N Q + + P + N + ++
Sbjct: 102 KFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVV 161
Query: 165 GNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGP 199
G + F + + DAD E
Sbjct: 162 GGMSTAWTCATPRFDREQRPLLVKDDADADDAEWD 196
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 47.1 bits (112), Expect = 3e-06
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 36 QGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+ + + +D+V++G GV G A L VL++++G
Sbjct: 5 HHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 44.0 bits (103), Expect = 3e-05
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 49 KPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYT 94
+P+ + +D ++G G G +A R++ +VL+LE N Y+
Sbjct: 2 QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLER-RPHIGGNAYS 49
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 43.9 bits (102), Expect = 3e-05
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGE 88
+D V+IG G G+ A L + P +LL+E G
Sbjct: 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 42.1 bits (100), Expect = 1e-04
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
+ D ++IG GV G +A L+ +VL+ E+ E
Sbjct: 4 DIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 41.3 bits (96), Expect = 2e-04
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGE 88
+ D +I+G G G A +++N P KV ++ES
Sbjct: 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 41.1 bits (95), Expect = 3e-04
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 11/112 (9%)
Query: 41 RENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES----GEDENIYTNI 96
REN++ + YD +I+G G+ +++ LS K +L+L+ G +
Sbjct: 11 RENLYFQGE----HYDVIILGTGLKECILSGLLSHYGKK-ILVLDRNPYYGGETASLNLT 65
Query: 97 PLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYM 148
L F + Y +N L K L + + NY+
Sbjct: 66 NLYNTFKPKENIPSKYG--ENRHWNVDLIPKFILVGGNLVKILKKTRVTNYL 115
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 40.8 bits (96), Expect = 3e-04
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
YD +++GGG GGS A ++ K L++E +
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPE 38
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 40.6 bits (95), Expect = 3e-04
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
+YD +IIGGG GS A +LS K+LL++S
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPW 40
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 40.1 bits (93), Expect = 6e-04
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+D++I+G G GSV+A RL+ + +VL+++
Sbjct: 28 KGFDYLIVGAGFAGSVLAERLASS-GQRVLIVD 59
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 40.2 bits (93), Expect = 6e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
D ++IG G G A RL++ ++++S E
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 39.3 bits (91), Expect = 7e-04
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+E D V++G G G A +S+NP +V ++E
Sbjct: 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 73
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 39.9 bits (93), Expect = 7e-04
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+D ++IGGG GGS +A+ ++ +VLLLE
Sbjct: 6 EVFDLIVIGGGPGGSTLASFVAMR-GHRVLLLE 37
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 39.1 bits (92), Expect = 0.001
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
E D+++IG G+ G+ LS + +V++LE
Sbjct: 8 IEADYLVIGAGIAGASTGYWLSAHG--RVVVLE 38
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 39.0 bits (91), Expect = 0.001
Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+ D ++IG G G+V A+ ++++ +KV ++E +
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQK 38
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 38.7 bits (91), Expect = 0.001
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
Y+ V+IGGG+ GS +A L++ L ESG
Sbjct: 16 RHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGT 50
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLESGE 88
YD +I+GGG G A L++N V +LE G
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 38.5 bits (89), Expect = 0.002
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+ +I+G G G+V+ +L+E +V +++
Sbjct: 1 MKSKKILIVGAGFSGAVIGRQLAEK-GHQVHIID 33
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 38.1 bits (89), Expect = 0.002
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+YD +IIG G G+ + VL+ ++
Sbjct: 2 KYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAHM 35
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 38.1 bits (88), Expect = 0.002
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
YD++I+G G+ G+V AN L + KVL++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIE 31
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 37.7 bits (88), Expect = 0.003
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+ +D +++G G G +L++ K LL++
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVD 33
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 37.8 bits (88), Expect = 0.003
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 11/57 (19%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWG 111
YD V++GGG G A +++E +VL+LE + N T
Sbjct: 5 YDVVVVGGGPVGLATAWQVAER-GHRVLVLERHT----------FFNENGGTSGAER 50
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 37.5 bits (88), Expect = 0.003
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+ + V+IGGG+ G +A+ L++ +V ++E
Sbjct: 4 EKSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKRF 38
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 37.4 bits (86), Expect = 0.004
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESG 87
E D VI+G G G A LS P ++ ++E+G
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 26/197 (13%), Positives = 49/197 (24%), Gaps = 82/197 (41%)
Query: 85 ESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSI 144
D+ T L+ F L + + + P +G ++ +
Sbjct: 47 GFAADDEPTTPAELVGKF--LGYVS-------SLVEPSKVGQFDQ--------------V 83
Query: 145 LNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFL-DADIHSREGPLKV- 202
LN L F + +L DIH+ L
Sbjct: 84 LN--------------------------LCLTEF------ENCYLEGNDIHALAAKLLQE 111
Query: 203 --TNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY---------- 250
T + L + + A+ + P+ +A E ++
Sbjct: 112 NDTTLVKTKELIKNYITARI----MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 251 DYTGIEPATEGFSKLQS 267
DY F +L+
Sbjct: 168 DY---------FEELRD 175
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 37.1 bits (86), Expect = 0.005
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 58 VIIGGGVGGSVVANRLSE-NPKWKVLLLE 85
V++GGG GG+ A + +P +V L+E
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIE 34
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 37.3 bits (86), Expect = 0.005
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+ IIGGG GSV L + V + E
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERSA 56
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 37.1 bits (87), Expect = 0.006
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+D ++IGGG GG A ++ K KV + + E
Sbjct: 6 SFDLLVIGGGSGGLACAKEAAQLGK-KVAVADYVE 39
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 36.8 bits (86), Expect = 0.006
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
YD ++IGGG GG A R + + KV L+E
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNA-KVALVEKSR 35
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 36.8 bits (86), Expect = 0.007
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86
+YD ++IGGG G A N +V L+
Sbjct: 9 DYDLIVIGGGSAGLACAKEAVLNGA-RVACLDF 40
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 36.7 bits (86), Expect = 0.007
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
YD+++IGGG GG A R +E + ++ES
Sbjct: 20 SYDYLVIGGGSGGLASARRAAELGA-RAAVVESH 52
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 36.7 bits (85), Expect = 0.007
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
++ D V++GGG+ G A L ++ V++LE
Sbjct: 3 NKCDVVVVGGGISGMAAAKLLHDSG-LNVVVLE 34
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 36.8 bits (84), Expect = 0.008
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 18 HWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENP 77
+ + +L+ V+ R + F + P +IIG GV G A +L
Sbjct: 71 YNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF- 129
Query: 78 KWKVLLLE 85
V LLE
Sbjct: 130 GMDVTLLE 137
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 36.3 bits (85), Expect = 0.009
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
YD+++IGGG GG A R + K LL+E+
Sbjct: 11 HYDYLVIGGGSGGVASARRAASYGA-KTLLVEAK 43
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 35.9 bits (84), Expect = 0.011
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
YD++ IGGG GG NR + + K L+E+ E
Sbjct: 4 HYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAKE 37
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 35.1 bits (81), Expect = 0.011
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 22 NILLESVYQKYLRQQGLEFRENIFLGNKPI-LSEYDFVIIGGGVGGSVVANRLSENPKWK 80
N L +YQ + E + ++ I +I+G G G+ + L
Sbjct: 6 NRLGHKIYQHSGKWLQETAAEKLNQRDQLINPGHAQVLILGMGRIGTGAYDELRARYGKI 65
Query: 81 VLLLESGED 89
L +E E+
Sbjct: 66 SLGIEIREE 74
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 36.0 bits (84), Expect = 0.011
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
++D +IG G GG A K +V + E
Sbjct: 26 DFDLFVIGSGSGGVRAARLAGALGK-RVAIAEEYR 59
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 36.0 bits (84), Expect = 0.011
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPL 98
YD V+IG G GG + K +V +++ + L
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAAL 47
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 36.2 bits (84), Expect = 0.011
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+YD ++IGGG GG ++ K +L+ E
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAKYGA-KTAVLDYVE 140
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 36.0 bits (82), Expect = 0.011
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
VIIG G G A RL+E L E +
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECND 43
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 36.0 bits (84), Expect = 0.012
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPL 98
+D V+IG G GG + +V +++ L
Sbjct: 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAAL 51
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 36.0 bits (84), Expect = 0.012
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+YD +IIGGG GG A ++ K KV++L+
Sbjct: 32 DYDLIIIGGGSGGLAAAKEAAQYGK-KVMVLDFVT 65
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 36.0 bits (83), Expect = 0.012
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+I+G G G+ A L+ V +L+
Sbjct: 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 35.9 bits (84), Expect = 0.013
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+YD +IGGG GG + K KV + E
Sbjct: 5 DYDLFVIGGGSGGVRSGRLAAALGK-KVAIAEEFR 38
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 35.6 bits (83), Expect = 0.014
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
+D + IGGG GG VA + + K +V L+ES
Sbjct: 4 HFDLIAIGGGSGGLAVAEKAAAFGK-RVALIESK 36
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 35.6 bits (82), Expect = 0.015
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+ IIG G G L + +LE
Sbjct: 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILE 37
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 35.3 bits (80), Expect = 0.023
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 18 HWTHNILLESVYQKYLRQQGL-EFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSEN 76
+ + +L+ V+ YL + GL F + P +IIG GV G A +L
Sbjct: 242 YNSDTVLVHRVH-SYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF 300
Query: 77 PKWKVLLLE 85
V LLE
Sbjct: 301 -GMDVTLLE 308
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 34.8 bits (79), Expect = 0.026
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
EYD +++G G+ +++ +S N KVL ++
Sbjct: 5 EEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNP 39
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 35.1 bits (79), Expect = 0.026
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 48 NKPILSEYDFVIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDENIYTNIPLLAHFNSL 105
NKPI + VI+GGG G + A+ L + + L+ES I + +
Sbjct: 2 NKPI---KNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRIGVGEATIPSLQKV 58
Query: 106 TH 107
Sbjct: 59 FF 60
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 34.7 bits (78), Expect = 0.035
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 58 VIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDENI---YTNIPLLAHFNSLTHFNW 110
VI+GGG G + A+ L + + V L+ESG I + HF +
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDE 63
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 34.2 bits (77), Expect = 0.037
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
IIG G+ G A L+ +V L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTAA-GHQVHLFDKS 34
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 34.2 bits (78), Expect = 0.040
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGE 88
S VI+GGG+ G A P + LLE+GE
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 34.3 bits (77), Expect = 0.048
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 14/67 (20%)
Query: 58 VIIGGGVGGSVVANRLS-----------ENPKWKVLLLESGEDENI---YTNIPLLAHFN 103
+I+GGG G + A L+ +PK + L+ES + I P +
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATIGVGEGTWPSMRSTL 70
Query: 104 SLTHFNW 110
S +
Sbjct: 71 SKIGIDE 77
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.2 bits (79), Expect = 0.051
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLL 84
D +IIG G G +A RL++ +V++L
Sbjct: 8 SCDVLIIGSGAAGLSLALRLADQH--QVIVL 36
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 34.0 bits (78), Expect = 0.054
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
YD +++GGG G A L+ KVLLLE
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLE 31
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 33.7 bits (76), Expect = 0.054
Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
++YD +++G G+ +++ LS + K KVL ++ +
Sbjct: 10 TDYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQD 44
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 34.0 bits (77), Expect = 0.055
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
++ +IIG G+ G A+ L +N L+LE
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLE 39
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 33.9 bits (77), Expect = 0.056
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
S +IG GV G A +L V + E+
Sbjct: 12 SAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEG 46
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 33.9 bits (77), Expect = 0.059
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 58 VIIGGGVGGSVVANRLSE-NPKWKVLLLESGE 88
V++GGG+ G + LS KV+L+ES E
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 33.8 bits (77), Expect = 0.063
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
P + + ++GGG+ G VA+ L +LLES
Sbjct: 12 PRTTGMNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSA 49
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 33.6 bits (75), Expect = 0.066
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 56 DFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGED 89
+I+G G+ GS+ A L + + + +D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD 38
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 33.5 bits (77), Expect = 0.067
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 58 VIIGGGVGGSVVANRLSE-NPKWKVLLLE 85
V+IGGGVGG A L P K+ L+
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLIS 34
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 33.6 bits (77), Expect = 0.075
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+ D I+G G G A L + V ++E
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIE 35
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 33.3 bits (77), Expect = 0.078
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 48 NKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED------ENIY 93
D V+IG G GG ++L + + + N Y
Sbjct: 2 TAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRY 53
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 33.5 bits (77), Expect = 0.080
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+++G G G + + V+L++
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKAGA-NVILVD 151
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 33.4 bits (76), Expect = 0.083
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 54 EYDFVIIGGGVGGSVVANRLSE-----NPKWKVLLLESG 87
D +++GGG+G A P+ K+LL++
Sbjct: 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA 60
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 33.3 bits (77), Expect = 0.092
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
+IG G A + E +V L+E G
Sbjct: 3 PPVQVAVIGSGGAAMAAALKAVEQ-GAQVTLIERG 36
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 33.1 bits (76), Expect = 0.10
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
E D V+ G G+ G + + VL+LE
Sbjct: 41 EADVVVAGYGIAGVAASIEAARAGA-DVLVLE 71
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 33.1 bits (76), Expect = 0.10
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
D V++G G G A +++ KV+L+E
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDSGA-KVILIE 156
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 32.8 bits (75), Expect = 0.10
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 58 VIIGGGVGGSVVANRLSE--NPKWKVLLLE 85
VI+G G GG A + E +V L+
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 33.2 bits (76), Expect = 0.10
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 54 EYDFVIIGGGVGG---SVVANRLSENPKWKVLLLE 85
E D +IIGGG G + A ++ KV L+E
Sbjct: 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 32.6 bits (74), Expect = 0.12
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 53 SEYDFVIIGGGVGGSVVANRLS-----ENPKWKVLLLESGE 88
+ VIIGGG+ G A + +N ++ L+E+
Sbjct: 4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 32.4 bits (74), Expect = 0.14
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 58 VIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDENIYTNIPLLA 100
+++GG G A L K V ++ +P +A
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVA 49
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.5 bits (75), Expect = 0.15
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 47 GNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED------ENIY 93
+ E D +++G G G RL E V ++E+ D N Y
Sbjct: 9 SRRQPPEEVDVLVVGAGFSGLYALYRLREL-GRSVHVIETAGDVGGVWYWNRY 60
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 32.5 bits (75), Expect = 0.15
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 57 FVIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
+VIIGG G A ++ + V+ LE GE
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI 72
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 32.3 bits (74), Expect = 0.15
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLLLE 85
V++G G+GG + L+ N ++++LE
Sbjct: 4 VVVGAGLGGLLAGAFLARNGH-EIIVLE 30
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.2 bits (74), Expect = 0.18
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 48 NKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED------ENIY 93
N+ D V+IG GV G A +++ KVL +E+GED N Y
Sbjct: 3 NRAKSPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGEDVGGTWYWNRY 53
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 32.0 bits (73), Expect = 0.23
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
D VIIG G G A + KV+LLE
Sbjct: 126 TTDVVIIGSGGAGLAAAVSARDAGA-KVILLE 156
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 31.8 bits (73), Expect = 0.25
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 57 FVIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
V++GG GG+ VA RL + + +++++E GE
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY 72
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD;
1.54A {Staphylococcus aureus}
Length = 438
Score = 31.7 bits (73), Expect = 0.26
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 58 VIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
V++G GG+ A+++ + + +++ E D
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 31.8 bits (73), Expect = 0.27
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED------ENIY 93
YD V++G G+ G +R V E+ N Y
Sbjct: 21 SYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASGVGGVWYWNRY 65
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 31.7 bits (73), Expect = 0.28
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 58 VIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
VIIGGG G A+R+ P+W V + E+ E
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW 39
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 31.7 bits (73), Expect = 0.29
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 53 SEYDFVIIGGGVGGSVVANR 72
+ YD V++G G GG V A R
Sbjct: 2 THYDVVVLGAGPGGYVAAIR 21
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur
initiative; 2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 31.7 bits (73), Expect = 0.29
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 58 VIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
V+IG G A R +P+ V +++
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQASR 39
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 31.7 bits (73), Expect = 0.30
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 31 KYLRQQGLEFRENIFLGN----KPILSEYDFVIIGGGVG 65
K L G+ + N +G + ++ V++ GV
Sbjct: 180 KLLADAGVIYHPNFEVGRDASLPELRRKHVAVLVATGVY 218
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 31.4 bits (72), Expect = 0.30
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 58 VIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
+IIGG GG+ A R + ++++ E GE
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERGEY 37
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 31.7 bits (70), Expect = 0.31
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 58 VIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLE 115
+I+GGG G + A+ L + + LL++ + + + + T F +
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNLQ--TAFFDFLGIP 86
Query: 116 KNEEHPQCLGMY 127
++E +C Y
Sbjct: 87 EDEWMRECNASY 98
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 31.4 bits (71), Expect = 0.31
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 46 LGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+ + +D ++IGGG G L+ +K LLLE
Sbjct: 31 IEDTDKDGPWDVIVIGGGYCGLTATRDLTVAG-FKTLLLE 69
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET:
FAD; 2.60A {Enterococcus faecalis}
Length = 452
Score = 31.3 bits (72), Expect = 0.35
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 57 FVIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
VIIG G A + P+ ++ L++
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQAT 38
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 31.3 bits (72), Expect = 0.35
Identities = 5/33 (15%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 58 VIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
+++G G+ + +++P V E ++
Sbjct: 4 IVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN 36
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 31.3 bits (72), Expect = 0.36
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 58 VIIGGGVGGSVVANRL-SENPKWKVLLLESGED 89
+++G GG L + +P ++ E G+
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.43
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 44/142 (30%)
Query: 7 KLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKP-----IL---SEYDFV 58
KLT I+ N+L + Y+K + + F + + P ++ V
Sbjct: 354 KLTTIIESSL-----NVLEPAEYRKMFDRLSV-FPPSA---HIPTILLSLIWFDVIKSDV 404
Query: 59 IIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLA-------------HFNSL 105
++ V N+L K L+E E+ + IP + H + +
Sbjct: 405 MV--------VVNKLH-----KYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIV 450
Query: 106 THFNWGYKLEKNEEHPQCLGMY 127
H+N + ++ P L Y
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQY 472
Score = 29.4 bits (65), Expect = 1.5
Identities = 47/325 (14%), Positives = 91/325 (28%), Gaps = 98/325 (30%)
Query: 18 HWTHNILLESVYQKYLRQQGLEFRENIFLGN----------KPILS--EYDFVIIGGGV- 64
H H++ E+ +Y + L E+ F+ N K ILS E D +I+
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 65 -------------GGSVVA----NRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTH 107
+V L N K+ L+ + E P S+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQ---RQP------SMMT 109
Query: 108 FNWGYKLEKNEEHPQCLGMYNDQCPCPRGK---------------------GLGGS--SI 144
+ + ++ Q YN R + G+ GS +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 145 LNYMIYTRGNKKDYDTYEAAGNKG-W---GYDSVLKYFLKSENNTSEFLDADIHSREGPL 200
+ + Y K W + + L+ +D + SR
Sbjct: 166 VALDVC-----LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SD 218
Query: 201 KVTNIPYQ-NLLTEK---FTQAKEGP--------------LKVTNIPYQNLLTEKFTQAA 242
+NI + + + + ++K N+ + LLT +F Q
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 243 CELGYRIYDYTGIEPATEGFSKLQS 267
L + ++ + + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEV 303
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 30.9 bits (70), Expect = 0.48
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 54 EYDFVIIGGGVGGSVVANRL-----SENPKWKVLLLESGED 89
E D VI+G G G A RL +V L+E
Sbjct: 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 75
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 30.7 bits (70), Expect = 0.53
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 53 SEYDFVIIGGGVGGSVVANRLS 74
EYD + IGGG G + L
Sbjct: 42 REYDAIFIGGGAAGRFGSAYLR 63
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 30.6 bits (69), Expect = 0.57
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+++G G+ G A RLSE +L+LE
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILE 35
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 30.6 bits (70), Expect = 0.60
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 53 SEYDFVIIGGGVGGSVVANRLS 74
YD ++IG G GG V A + +
Sbjct: 24 MAYDLIVIGSGPGGYVCAIKAA 45
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 29.4 bits (66), Expect = 0.61
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLLL 84
++G G G ++A L + + V +
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTVA 35
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 30.6 bits (70), Expect = 0.65
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
D IIG G G ++ KV+L+E G
Sbjct: 8 NVDVAIIGTGTAGMGAYRAAKKHTD-KVVLIEGG 40
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 30.6 bits (70), Expect = 0.66
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 54 EYDFVIIGGGVGGSVVANR 72
VI+GGG G A
Sbjct: 2 VTRIVILGGGPAGYEAALV 20
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 30.5 bits (68), Expect = 0.66
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 58 VIIGGGVGGSVVANRLSE-NPKWKVLLLE 85
++IG G G V A++L + P W + ++E
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVE 32
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 30.2 bits (69), Expect = 0.76
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 54 EYDFVIIGGGVGGSVVANRLS 74
E D VIIGGG GG V A + +
Sbjct: 6 ENDVVIIGGGPGGYVAAIKAA 26
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 30.2 bits (69), Expect = 0.87
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 28 VYQKYLRQQGLEF-RENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86
++ + G++ EN++ + + YD ++IGGG G + A +E VLLL+
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAM--HYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDK 57
Query: 87 GE 88
G
Sbjct: 58 GN 59
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 30.2 bits (69), Expect = 0.88
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 54 EYDFVIIGGGVGGSVVANR 72
+D VIIGGG G V A +
Sbjct: 5 SHDVVIIGGGPAGYVAAIK 23
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 29.8 bits (67), Expect = 0.93
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 39 EFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
EF E G K + VI+G G+ G A L+ +V +LE
Sbjct: 18 EFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLE 63
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 29.9 bits (67), Expect = 0.98
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
+ V++GGG G A L + +KV +LE
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKA-GYKVTVLE 41
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 29.8 bits (68), Expect = 1.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 54 EYDFVIIGGGVGGSVVANRLS 74
+YD V+IG G G A RL+
Sbjct: 4 KYDVVVIGAGGAGYHGAFRLA 24
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 29.7 bits (67), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 58 VIIGGGVGGSVVANRLSENPKWK-VLLLESGE 88
VIIG G+ G+ +A+ L W + +L+ G
Sbjct: 8 VIIGAGIVGTNLADELVTR-GWNNITVLDQGP 38
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 29.4 bits (67), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 47 GNKPILSEYDFVIIGGGVGGSVVANR 72
++PI + D +IG G GG V A +
Sbjct: 1 ADQPI--DADVTVIGSGPGGYVAAIK 24
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 29.3 bits (66), Expect = 1.3
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 58 VIIG--GGVGGSVVANRLSENPKWKVLLL 84
V+ G G GGSV L E+ +KV ++
Sbjct: 9 VVFGGTGAQGGSVA-RTLLEDGTFKVRVV 36
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide
dehydrogenase, 2-oxoglutarate dehydrogenase comple
pyruvate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus} PDB: 2eq7_A*
Length = 455
Score = 29.4 bits (67), Expect = 1.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 55 YDFVIIGGGVGGSVVANRLS 74
YD ++IG G GG V A R +
Sbjct: 2 YDLLVIGAGPGGYVAAIRAA 21
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 29.4 bits (67), Expect = 1.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 54 EYDFVIIGGGVGGSVVANR 72
++D ++IG G GG V A +
Sbjct: 3 KFDVIVIGAGPGGYVAAIK 21
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 1.3
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
Y++++IG G + L+ K KVL ++ ++
Sbjct: 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKE 40
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 29.6 bits (66), Expect = 1.3
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 11 IVLICHVHWTHNILLESVYQKYLRQQGLEFREN---IFLGNKPILSEYDFVIIGGGVGGS 67
I LI + ++ K+ + + F+ P ++IG G G
Sbjct: 61 IHLIYTLDIIVEGDETALLAKFANDPHVRQTPDMEYKFVAKAPENLTERPIVIGFGPCGL 120
Query: 68 VVANRLSENPKWKVLLLESGED 89
L++ + +++E G++
Sbjct: 121 FAGLVLAQ-MGFNPIIVERGKE 141
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 53 SEYDFVIIGGGVGGSVVANR 72
YD ++IG G GG A R
Sbjct: 5 KTYDLIVIGTGPGGYHAAIR 24
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLLLES 86
V+IG G+GG + A RLS+ +V + E
Sbjct: 4 VVIGAGLGGLLSAARLSKA-GHEVEVFER 31
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 29.2 bits (66), Expect = 1.6
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 9/36 (25%)
Query: 54 EYDFVIIGGGVGGSVVA----NRLSENPKWKVLLLE 85
+ D ++IGGG+ G+ +A R + L+E
Sbjct: 18 QLDLLVIGGGITGAGIALDAQVR-----GIQTGLVE 48
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 29.4 bits (67), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 54 EYDFVIIGGGVGGSVVANR 72
YD V+IGGG GG V + +
Sbjct: 2 PYDVVVIGGGPGGYVASIK 20
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 29.0 bits (66), Expect = 1.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 54 EYDFVIIGGGVGGSVVANR 72
+ +IIGGG GG V A R
Sbjct: 5 QTTLLIIGGGPGGYVAAIR 23
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 29.0 bits (66), Expect = 1.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 54 EYDFVIIGGGVGGSVVANR 72
E + +++G G GG V A R
Sbjct: 3 ETETLVVGAGPGGYVAAIR 21
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 29.0 bits (66), Expect = 1.8
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 28 VYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
++ + G++ + + D VIIG G G + A + + +VL+++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMVAEKQDVVIIGAGAAGMMCAIEAGKRGR-RVLVIDHA 59
Query: 88 E 88
Sbjct: 60 R 60
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 28.9 bits (65), Expect = 1.8
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 53 SEYDFVIIGGGVGGSVVANRL 73
S F++IGGG A +
Sbjct: 10 SHVPFLLIGGGTAAFAAARSI 30
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 29.2 bits (66), Expect = 1.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 9/36 (25%)
Query: 54 EYDFVIIGGGVGGSVVA----NRLSENPKWKVLLLE 85
E D +IIGGG+ G+ VA K L+E
Sbjct: 32 ELDLLIIGGGITGAGVAVQAAAS-----GIKTGLIE 62
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 29.0 bits (65), Expect = 2.1
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 31 KYLRQQGLEFRENIFLGNKPILSE------YDFVIIGGGVGGS 67
+ ++ G++ L I Y IG G+
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEP 288
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.7 bits (65), Expect = 2.2
Identities = 4/34 (11%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 58 VIIGGGVGG-SVVANRLSENP-KWKVLLLESGED 89
V++G G + + L+ ++++ + +
Sbjct: 39 VVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN 72
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 28.7 bits (65), Expect = 2.3
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 54 EYDFVIIGGGVGGSVVA----NRLSENPKWKVLLLESG 87
D ++IGGG+ G+ +A R VL+LE+
Sbjct: 3 TKDLIVIGGGINGAGIAADAAGR-----GLSVLMLEAQ 35
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 28.7 bits (65), Expect = 2.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 53 SEYDFVIIGGGVGGSVVANR 72
+EYD V++GGG GG A
Sbjct: 5 AEYDVVVLGGGPGGYSAAFA 24
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 28.5 bits (63), Expect = 2.5
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
S+ V++G GV G A L+ + V +L
Sbjct: 5 SQKRVVVLGSGVIGLSSALILARK-GYSVHILA 36
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 27.8 bits (62), Expect = 2.6
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 41 RENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED 89
++ + N P + + D IIGGG G V +R + + LL +
Sbjct: 78 SVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIEAN 127
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 28.2 bits (63), Expect = 3.0
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+ IIG G G +A L + V++LE G
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT 38
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 28.2 bits (64), Expect = 3.0
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
+ +IIG G G A +L++ K V + ++G+
Sbjct: 5 SENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGK 37
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 28.2 bits (63), Expect = 3.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLLLE 85
IIGGG G +A L +N V + E
Sbjct: 30 AIIGGGPVGLTMAKLLQQN-GIDVSVYE 56
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 28.0 bits (63), Expect = 3.6
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
D +I G G+GG+++A L +V+++E
Sbjct: 6 HIDVLINGCGIGGAMLAYLLGRQG-HRVVVVE 36
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 28.0 bits (63), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLLLES 86
+I G G+GG A L + KV LLES
Sbjct: 8 LIAGAGIGGLSCALALHQAGIGKVTLLES 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.2
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 260 EGFSKLQSTLSKGQRYSANRA 280
+ KLQ++L + Y+ + A
Sbjct: 20 QALKKLQASL---KLYADDSA 37
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 27.7 bits (62), Expect = 4.3
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLLLE 85
++GG + G A L + V + E
Sbjct: 9 AVVGGSISGLTAALMLRDA-GVDVDVYE 35
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.9 bits (61), Expect = 4.5
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLL 83
+++G G V + L+ N V +
Sbjct: 27 LLLGSGFVAQPVIDTLAANDDINVTV 52
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 27.5 bits (61), Expect = 4.6
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 29 YQKYLRQQGLEFRE-NIFLGNK--PILSEYDFVIIGGG 63
Y + +G + ++ K + ++D +I+ GG
Sbjct: 17 YLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGG 54
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.2 bits (61), Expect = 4.7
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 41 RENIFLGNKPILSEYDFVIIG-GGVGGSVVANRLSEN 76
REN++ P++ VI+G VG + +A++ E
Sbjct: 11 RENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 27.5 bits (62), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 7/38 (18%)
Query: 54 EYDFVIIGGGVGG---SVVANRLSENPKWKVLLLESGE 88
++D +IIGG G ++ R + +LL+++GE
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRA----RKNILLVDAGE 35
>2ap1_A Putative regulator protein; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.90A
{Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Length = 327
Score = 27.6 bits (62), Expect = 5.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 57 FVIIGGGVGGSVVAN 71
+I+G GVGG +V N
Sbjct: 151 GLILGTGVGGGLVLN 165
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A*
3c3e_A* 3cgw_A
Length = 311
Score = 27.3 bits (60), Expect = 5.6
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 58 VIIGGGVGGSVVANRLSE 75
+I GG G + + L E
Sbjct: 2 IIFSGGTGTPKLLDGLKE 19
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 27.3 bits (60), Expect = 5.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 58 VIIGGGVGGSVVANRLSEN 76
V+IG GV G A + E
Sbjct: 4 VVIGAGVIGLSTALCIHER 22
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 27.5 bits (62), Expect = 6.0
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLLLESGEDE 90
IIG G+ G L K KV L+ D
Sbjct: 3 YIIGSGIAGLSAGVALRRAGK-KVTLISKRIDG 34
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics,
center for structural genomics of infec diseases, csgid,
transferase; 1.95A {Vibrio vulnificus}
Length = 327
Score = 27.2 bits (61), Expect = 6.0
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 57 FVIIGGGVGGSVVAN 71
+I+G G GG ++
Sbjct: 151 GLILGTGFGGGLIYE 165
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar
methabolism, structural genomics, PSI, protein structure
initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10
c.55.1.10
Length = 289
Score = 27.1 bits (61), Expect = 6.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 57 FVIIGGGVGGSVVAN 71
F+ + GVGG VV+
Sbjct: 126 FITVSTGVGGGVVSG 140
>3lm2_A Putative kinase; structural genomics, joint center for struc
genomics, JCSG, protein structure initiative, PSI-2,
transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 27.0 bits (60), Expect = 6.3
Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 41/140 (29%)
Query: 51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENI---YTNIPLLAHFNSLTH 107
+ + + +I G G VV N+ P N+ + F
Sbjct: 49 MAKDMTYDVIAMGYPGPVVHNKPLREP------------VNLGEGWVGYDYEGAFGRPVR 96
Query: 108 FNWGYKLEKNEEHPQCLGMYNDQCP--CPRGKGLGGSSILN---------YMIYTRGNKK 156
N+ Q +G YN G GLG + I+ ++ Y +G K
Sbjct: 97 IV-------NDALMQAIGSYNGGRMLFLGLGTGLGAAMIVENVAQPMEIAHLPYRKG--K 147
Query: 157 DYDTY------EAAGNKGWG 170
Y+ Y E GN W
Sbjct: 148 TYEHYVSEAYREKKGNAKWQ 167
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 27.0 bits (59), Expect = 6.4
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 57 FVIIGG--GVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHF 102
V+I G G G + N + LL E E + LL
Sbjct: 22 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELM 69
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Length = 310
Score = 27.2 bits (61), Expect = 6.7
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 57 FVIIGGGVGGSVVAN 71
+G G+G +V N
Sbjct: 137 AAYLGTGMGFAVWMN 151
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 27.0 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 39 EFRENIFLGN--KPILSEYDFVIIGGGVGGSV 68
E+R + L KP+L D +++GGG+G
Sbjct: 131 EYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMA 162
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 27.1 bits (61), Expect = 7.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 58 VIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPL 98
VI+G G GG +A +LS+ ++V +++ Y+ L
Sbjct: 12 VIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVPY-YSKPML 49
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 26.9 bits (60), Expect = 7.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 39 EFRENIFLGN--KPILSEYDFVIIGGGVGGSV 68
E+ N +G+ KP ++ + +GGGVG SV
Sbjct: 91 EYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 122
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 27.1 bits (61), Expect = 8.3
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 117 NEEHPQCLGMYN 128
+E+HP+ G+Y
Sbjct: 253 DEQHPRYGGVYV 264
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 26.7 bits (60), Expect = 9.1
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 117 NEEHPQCLGMYN 128
E+H G+Y
Sbjct: 251 PEDHAGFRGLYW 262
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 26.7 bits (60), Expect = 9.8
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 117 NEEHPQCLGMYN 128
EE+P +G
Sbjct: 251 PEENPHYIGTSW 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.411
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,241,037
Number of extensions: 243088
Number of successful extensions: 937
Number of sequences better than 10.0: 1
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 173
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)